Query psy10474
Match_columns 79
No_of_seqs 105 out of 1154
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 19:07:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 99.8 8.4E-21 1.8E-25 106.2 6.4 69 1-69 159-229 (240)
2 COG4987 CydC ABC-type transpor 99.8 9.9E-20 2.2E-24 112.0 7.6 75 1-75 497-571 (573)
3 COG4988 CydD ABC-type transpor 99.8 9.5E-20 2.1E-24 112.7 7.1 76 1-76 479-554 (559)
4 COG2274 SunT ABC-type bacterio 99.8 5.6E-19 1.2E-23 112.7 6.9 76 1-76 632-707 (709)
5 COG1125 OpuBA ABC-type proline 99.8 8.4E-19 1.8E-23 100.5 6.1 71 1-71 158-231 (309)
6 COG0444 DppD ABC-type dipeptid 99.8 9.3E-19 2E-23 102.5 6.2 73 1-73 176-251 (316)
7 COG1127 Ttg2A ABC-type transpo 99.8 2.2E-18 4.8E-23 97.8 7.2 74 1-74 168-244 (263)
8 PRK11174 cysteine/glutathione 99.8 2E-18 4.4E-23 108.5 7.6 76 1-76 508-583 (588)
9 COG1132 MdlB ABC-type multidru 99.8 4.5E-18 9.8E-23 106.6 7.6 76 1-76 488-563 (567)
10 COG1122 CbiO ABC-type cobalt t 99.8 3.7E-18 8.1E-23 97.4 6.2 66 1-66 161-229 (235)
11 PRK10790 putative multidrug tr 99.7 7.8E-18 1.7E-22 105.9 7.9 75 1-75 499-573 (592)
12 KOG0055|consensus 99.7 7.8E-18 1.7E-22 110.9 7.9 75 1-75 512-586 (1228)
13 cd03289 ABCC_CFTR2 The CFTR su 99.7 9.5E-18 2.1E-22 97.7 7.1 76 1-76 161-236 (275)
14 PRK11176 lipid transporter ATP 99.7 1.1E-17 2.3E-22 105.1 7.6 75 1-75 503-577 (582)
15 TIGR00957 MRP_assoc_pro multi 99.7 1.1E-17 2.4E-22 113.3 8.0 77 1-77 1444-1520(1522)
16 COG1124 DppF ABC-type dipeptid 99.7 3.5E-18 7.7E-23 97.0 4.6 67 1-67 164-233 (252)
17 COG1135 AbcC ABC-type metal io 99.7 4.3E-18 9.3E-23 99.5 4.7 69 1-69 164-235 (339)
18 PLN03232 ABC transporter C fam 99.7 1.7E-17 3.6E-22 112.3 8.1 76 1-76 1394-1470(1495)
19 COG4175 ProV ABC-type proline/ 99.7 8.8E-18 1.9E-22 98.7 5.9 71 1-71 187-260 (386)
20 COG1123 ATPase components of v 99.7 5.3E-18 1.1E-22 105.0 5.1 71 1-71 177-250 (539)
21 PLN03130 ABC transporter C fam 99.7 2.2E-17 4.8E-22 112.2 8.2 76 1-76 1397-1473(1622)
22 COG1120 FepC ABC-type cobalami 99.7 8.1E-18 1.8E-22 96.8 5.0 65 1-65 161-228 (258)
23 KOG0055|consensus 99.7 2E-17 4.3E-22 109.0 7.4 77 1-77 1149-1225(1228)
24 PRK11160 cysteine/glutathione 99.7 3.3E-17 7.1E-22 103.0 8.1 75 1-75 498-572 (574)
25 TIGR01846 type_I_sec_HlyB type 99.7 3.3E-17 7.2E-22 104.7 8.1 76 1-76 616-691 (694)
26 COG4598 HisP ABC-type histidin 99.7 2.2E-17 4.9E-22 91.1 6.1 69 1-69 175-245 (256)
27 PRK09473 oppD oligopeptide tra 99.7 2.5E-17 5.5E-22 97.9 6.5 69 1-69 184-255 (330)
28 COG1117 PstB ABC-type phosphat 99.7 6.1E-18 1.3E-22 94.9 3.5 69 1-69 172-241 (253)
29 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 5.3E-17 1.1E-21 103.6 8.1 73 1-75 611-683 (686)
30 PRK15093 antimicrobial peptide 99.7 3.1E-17 6.8E-22 97.5 6.6 68 1-68 181-251 (330)
31 TIGR01192 chvA glucan exporter 99.7 6E-17 1.3E-21 102.0 8.2 75 1-75 494-568 (585)
32 PRK11022 dppD dipeptide transp 99.7 3.5E-17 7.5E-22 97.2 6.7 69 1-69 176-247 (326)
33 PRK14257 phosphate ABC transpo 99.7 4.2E-17 9.2E-22 97.0 7.0 69 1-69 248-317 (329)
34 PRK13537 nodulation ABC transp 99.7 3.2E-17 6.9E-22 96.7 6.4 65 1-65 161-227 (306)
35 PTZ00243 ABC transporter; Prov 99.7 4.8E-17 1E-21 110.4 8.0 76 1-76 1469-1545(1560)
36 KOG0057|consensus 99.7 7.2E-17 1.6E-21 99.8 7.9 76 1-76 510-585 (591)
37 KOG0058|consensus 99.7 3.4E-17 7.4E-22 103.5 6.6 76 1-76 627-703 (716)
38 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 4.6E-17 1E-21 104.2 7.3 72 1-74 638-709 (710)
39 TIGR01271 CFTR_protein cystic 99.7 5.4E-17 1.2E-21 109.9 7.9 76 1-76 1376-1451(1490)
40 TIGR02314 ABC_MetN D-methionin 99.7 4.3E-17 9.4E-22 97.4 6.6 66 1-66 163-231 (343)
41 TIGR01193 bacteriocin_ABC ABC- 99.7 6.3E-17 1.4E-21 103.6 7.7 74 1-75 634-707 (708)
42 PRK13657 cyclic beta-1,2-gluca 99.7 6.5E-17 1.4E-21 101.8 7.6 75 1-75 494-568 (588)
43 cd03252 ABCC_Hemolysin The ABC 99.7 1E-16 2.3E-21 91.4 7.8 73 1-73 161-233 (237)
44 COG1131 CcmA ABC-type multidru 99.7 4.2E-17 9.1E-22 95.7 6.2 65 1-65 159-226 (293)
45 COG5265 ATM1 ABC-type transpor 99.7 5.1E-17 1.1E-21 98.2 6.5 75 1-75 422-496 (497)
46 PRK15079 oligopeptide ABC tran 99.7 5.6E-17 1.2E-21 96.5 6.4 69 1-69 184-255 (331)
47 COG4555 NatA ABC-type Na+ tran 99.7 4.9E-17 1.1E-21 90.7 5.6 64 1-64 156-221 (245)
48 PRK10789 putative multidrug tr 99.7 1E-16 2.2E-21 100.7 7.8 75 1-75 474-548 (569)
49 PRK11308 dppF dipeptide transp 99.7 6.8E-17 1.5E-21 96.0 6.3 69 1-69 177-248 (327)
50 TIGR03375 type_I_sec_LssB type 99.7 6.3E-17 1.4E-21 103.4 6.6 65 1-65 624-688 (694)
51 COG1123 ATPase components of v 99.7 6.7E-17 1.4E-21 100.2 6.4 71 1-71 452-525 (539)
52 PRK13536 nodulation factor exp 99.7 6.9E-17 1.5E-21 96.4 6.2 65 1-65 195-261 (340)
53 TIGR02203 MsbA_lipidA lipid A 99.7 1.3E-16 2.8E-21 100.0 7.6 74 1-74 492-565 (571)
54 PRK14245 phosphate ABC transpo 99.7 1.4E-16 3E-21 91.6 7.0 67 1-67 169-236 (250)
55 COG3840 ThiQ ABC-type thiamine 99.7 8.1E-17 1.8E-21 88.7 5.4 66 1-66 152-220 (231)
56 TIGR01188 drrA daunorubicin re 99.7 1.1E-16 2.3E-21 94.3 6.3 64 1-64 147-212 (302)
57 TIGR00958 3a01208 Conjugate Tr 99.7 9.4E-17 2E-21 102.9 6.3 70 1-72 640-709 (711)
58 COG4172 ABC-type uncharacteriz 99.7 7.1E-17 1.5E-21 97.6 5.3 72 1-72 449-523 (534)
59 PRK13651 cobalt transporter AT 99.7 1.3E-16 2.8E-21 94.1 6.4 66 1-66 188-255 (305)
60 PRK14273 phosphate ABC transpo 99.7 2E-16 4.3E-21 91.1 7.0 69 1-69 173-242 (254)
61 PRK14268 phosphate ABC transpo 99.7 2E-16 4.3E-21 91.3 6.9 66 1-66 177-243 (258)
62 cd03261 ABC_Org_Solvent_Resist 99.7 1.6E-16 3.4E-21 90.6 6.4 65 1-65 159-226 (235)
63 cd03219 ABC_Mj1267_LivG_branch 99.7 1.8E-16 4E-21 90.3 6.5 65 1-65 166-232 (236)
64 PRK13643 cbiO cobalt transport 99.7 1.4E-16 3.1E-21 93.3 6.1 65 1-65 167-233 (288)
65 TIGR01186 proV glycine betaine 99.7 1.5E-16 3.3E-21 95.6 6.3 67 1-67 152-221 (363)
66 PRK14274 phosphate ABC transpo 99.7 3E-16 6.4E-21 90.6 7.3 67 1-67 178-245 (259)
67 TIGR02204 MsbA_rel ABC transpo 99.7 3.1E-16 6.7E-21 98.4 7.8 75 1-75 499-573 (576)
68 PRK14239 phosphate transporter 99.7 2.6E-16 5.6E-21 90.5 6.9 67 1-67 171-238 (252)
69 TIGR03258 PhnT 2-aminoethylpho 99.7 2E-16 4.4E-21 95.1 6.7 69 1-69 160-232 (362)
70 TIGR00972 3a0107s01c2 phosphat 99.7 2.4E-16 5.1E-21 90.5 6.6 66 1-66 167-233 (247)
71 cd03251 ABCC_MsbA MsbA is an e 99.7 2.8E-16 6.1E-21 89.5 6.8 67 1-67 161-227 (234)
72 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 4.8E-16 1E-20 88.7 7.8 71 1-71 162-232 (238)
73 PRK14244 phosphate ABC transpo 99.7 3.5E-16 7.5E-21 90.0 7.0 67 1-67 172-239 (251)
74 PRK14248 phosphate ABC transpo 99.7 3.3E-16 7.2E-21 90.8 7.0 67 1-67 187-254 (268)
75 TIGR03415 ABC_choXWV_ATP choli 99.7 2.5E-16 5.4E-21 95.2 6.6 67 1-67 187-256 (382)
76 PRK10851 sulfate/thiosulfate t 99.7 2.6E-16 5.7E-21 94.3 6.6 69 1-69 159-230 (353)
77 PRK13631 cbiO cobalt transport 99.7 2.4E-16 5.2E-21 93.5 6.4 65 1-65 199-265 (320)
78 TIGR01288 nodI ATP-binding ABC 99.7 2.3E-16 5E-21 92.9 6.3 65 1-65 158-224 (303)
79 PRK14270 phosphate ABC transpo 99.7 3E-16 6.4E-21 90.2 6.6 67 1-67 170-237 (251)
80 cd03288 ABCC_SUR2 The SUR doma 99.7 7.6E-16 1.6E-20 88.9 8.2 67 1-67 179-245 (257)
81 PRK14242 phosphate transporter 99.7 3.6E-16 7.9E-21 89.9 6.8 66 1-66 172-238 (253)
82 KOG0054|consensus 99.7 2.6E-16 5.7E-21 105.2 7.0 74 1-74 1298-1372(1381)
83 TIGR03522 GldA_ABC_ATP gliding 99.7 3.2E-16 7E-21 92.2 6.7 65 1-65 156-221 (301)
84 COG4152 ABC-type uncharacteriz 99.7 6.7E-17 1.5E-21 92.3 3.7 65 1-65 153-219 (300)
85 PRK11650 ugpC glycerol-3-phosp 99.7 2.9E-16 6.3E-21 94.2 6.6 69 1-69 157-228 (356)
86 PRK13637 cbiO cobalt transport 99.7 2.7E-16 5.9E-21 92.0 6.2 65 1-65 167-234 (287)
87 PRK11432 fbpC ferric transport 99.7 3.6E-16 7.7E-21 93.7 6.7 69 1-69 159-230 (351)
88 cd03260 ABC_PstB_phosphate_tra 99.7 1.8E-16 3.9E-21 90.0 5.2 61 1-61 164-225 (227)
89 PRK14247 phosphate ABC transpo 99.7 4.2E-16 9.2E-21 89.5 6.7 66 1-66 169-235 (250)
90 TIGR03411 urea_trans_UrtD urea 99.7 3.6E-16 7.7E-21 89.4 6.3 65 1-65 166-231 (242)
91 PRK14251 phosphate ABC transpo 99.7 5.3E-16 1.2E-20 89.2 7.0 67 1-67 170-237 (251)
92 TIGR03265 PhnT2 putative 2-ami 99.7 3.8E-16 8.1E-21 93.7 6.6 69 1-69 157-228 (353)
93 PRK14256 phosphate ABC transpo 99.7 4.8E-16 1E-20 89.4 6.8 67 1-67 171-238 (252)
94 PRK11614 livF leucine/isoleuci 99.7 4.1E-16 8.9E-21 89.0 6.5 65 1-65 160-226 (237)
95 PRK13636 cbiO cobalt transport 99.7 2.9E-16 6.3E-21 91.8 5.9 65 1-65 164-231 (283)
96 PRK13634 cbiO cobalt transport 99.7 3.4E-16 7.4E-21 91.7 6.2 65 1-65 168-235 (290)
97 cd03296 ABC_CysA_sulfate_impor 99.7 3.4E-16 7.4E-21 89.5 6.1 65 1-65 159-226 (239)
98 PRK11000 maltose/maltodextrin 99.7 3.7E-16 7.9E-21 94.2 6.3 68 1-68 156-226 (369)
99 PRK10744 pstB phosphate transp 99.7 6.3E-16 1.4E-20 89.3 7.1 66 1-66 179-245 (260)
100 PRK14267 phosphate ABC transpo 99.7 5.2E-16 1.1E-20 89.3 6.6 66 1-66 172-238 (253)
101 cd03253 ABCC_ATM1_transporter 99.7 1.1E-15 2.3E-20 87.2 7.7 71 1-71 160-230 (236)
102 PRK14255 phosphate ABC transpo 99.7 6.4E-16 1.4E-20 88.9 6.9 67 1-67 171-238 (252)
103 TIGR01187 potA spermidine/putr 99.7 5.1E-16 1.1E-20 92.2 6.6 67 1-67 123-192 (325)
104 PRK13641 cbiO cobalt transport 99.7 4.4E-16 9.4E-21 91.2 6.2 65 1-65 168-234 (287)
105 cd03263 ABC_subfamily_A The AB 99.6 4.8E-16 1E-20 87.8 6.1 62 1-62 156-218 (220)
106 PRK14253 phosphate ABC transpo 99.6 6.8E-16 1.5E-20 88.6 6.8 65 1-65 168-233 (249)
107 PRK14240 phosphate transporter 99.6 8.4E-16 1.8E-20 88.3 7.2 66 1-66 169-235 (250)
108 PRK09536 btuD corrinoid ABC tr 99.6 5.2E-16 1.1E-20 94.3 6.6 65 1-65 162-228 (402)
109 cd03256 ABC_PhnC_transporter A 99.6 3.9E-16 8.5E-21 89.2 5.7 63 1-63 167-232 (241)
110 PRK14238 phosphate transporter 99.6 7.2E-16 1.6E-20 89.6 6.9 67 1-67 190-257 (271)
111 PRK10261 glutathione transport 99.6 4.6E-16 9.9E-21 98.7 6.5 69 1-69 486-557 (623)
112 PRK14269 phosphate ABC transpo 99.6 7.8E-16 1.7E-20 88.3 6.9 66 1-66 165-231 (246)
113 PRK09493 glnQ glutamine ABC tr 99.6 5.7E-16 1.2E-20 88.6 6.3 66 1-66 159-226 (240)
114 PRK14249 phosphate ABC transpo 99.6 8.7E-16 1.9E-20 88.3 7.1 67 1-67 170-237 (251)
115 cd03258 ABC_MetN_methionine_tr 99.6 5.1E-16 1.1E-20 88.4 6.1 65 1-65 163-230 (233)
116 TIGR02770 nickel_nikD nickel i 99.6 6.6E-16 1.4E-20 87.9 6.5 66 1-66 148-216 (230)
117 PRK13638 cbiO cobalt transport 99.6 5.9E-16 1.3E-20 89.9 6.4 65 1-65 159-225 (271)
118 PRK10619 histidine/lysine/argi 99.6 7.2E-16 1.6E-20 88.9 6.7 66 1-66 175-242 (257)
119 cd03224 ABC_TM1139_LivF_branch 99.6 4.9E-16 1.1E-20 87.8 5.9 63 1-63 155-219 (222)
120 PRK11153 metN DL-methionine tr 99.6 6.3E-16 1.4E-20 92.4 6.6 66 1-66 163-231 (343)
121 PRK11144 modC molybdate transp 99.6 5.1E-16 1.1E-20 93.1 6.2 69 1-69 151-222 (352)
122 PRK14272 phosphate ABC transpo 99.6 6.7E-16 1.5E-20 88.8 6.5 66 1-66 171-237 (252)
123 PRK11264 putative amino-acid A 99.6 7.3E-16 1.6E-20 88.5 6.6 66 1-66 167-234 (250)
124 cd03218 ABC_YhbG The ABC trans 99.6 5.4E-16 1.2E-20 88.2 5.9 65 1-65 156-222 (232)
125 PRK09452 potA putrescine/sperm 99.6 6.6E-16 1.4E-20 93.2 6.6 69 1-69 167-238 (375)
126 cd03254 ABCC_Glucan_exporter_l 99.6 8.9E-16 1.9E-20 87.2 6.8 65 1-65 162-226 (229)
127 PRK13646 cbiO cobalt transport 99.6 5.9E-16 1.3E-20 90.6 6.1 65 1-65 168-235 (286)
128 cd03294 ABC_Pro_Gly_Bertaine T 99.6 7.9E-16 1.7E-20 89.4 6.6 66 1-66 183-251 (269)
129 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 6.9E-16 1.5E-20 88.6 6.1 65 1-66 162-228 (254)
130 PRK14235 phosphate transporter 99.6 7.9E-16 1.7E-20 89.3 6.5 66 1-66 186-252 (267)
131 PRK13652 cbiO cobalt transport 99.6 6.9E-16 1.5E-20 90.0 6.2 65 1-65 160-227 (277)
132 TIGR02769 nickel_nikE nickel i 99.6 8.7E-16 1.9E-20 89.0 6.6 65 1-65 173-240 (265)
133 PRK13633 cobalt transporter AT 99.6 9.8E-16 2.1E-20 89.4 6.8 65 1-65 167-233 (280)
134 PRK14262 phosphate ABC transpo 99.6 1.2E-15 2.5E-20 87.7 7.0 66 1-66 169-235 (250)
135 PRK13650 cbiO cobalt transport 99.6 8.4E-16 1.8E-20 89.7 6.4 65 1-65 163-229 (279)
136 TIGR02315 ABC_phnC phosphonate 99.6 6.2E-16 1.4E-20 88.5 5.6 63 1-63 168-233 (243)
137 PRK14237 phosphate transporter 99.6 1.3E-15 2.8E-20 88.4 7.0 66 1-66 186-252 (267)
138 PRK13639 cbiO cobalt transport 99.6 9.9E-16 2.1E-20 89.2 6.5 65 1-65 160-226 (275)
139 PRK14236 phosphate transporter 99.6 1.1E-15 2.4E-20 88.9 6.7 66 1-66 191-257 (272)
140 PRK14275 phosphate ABC transpo 99.6 1E-15 2.2E-20 89.6 6.5 66 1-66 205-271 (286)
141 PRK13644 cbiO cobalt transport 99.6 9.7E-16 2.1E-20 89.2 6.4 65 1-65 159-224 (274)
142 PRK14243 phosphate transporter 99.6 1.3E-15 2.8E-20 88.3 6.9 67 1-67 174-250 (264)
143 TIGR03410 urea_trans_UrtE urea 99.6 7.8E-16 1.7E-20 87.5 5.8 63 1-63 154-219 (230)
144 PRK11701 phnK phosphonate C-P 99.6 1.1E-15 2.5E-20 88.2 6.5 67 1-67 174-243 (258)
145 PRK13648 cbiO cobalt transport 99.6 1.6E-15 3.5E-20 88.0 7.2 66 1-66 165-232 (269)
146 PRK13647 cbiO cobalt transport 99.6 8.4E-16 1.8E-20 89.5 6.0 62 1-62 161-224 (274)
147 PRK13645 cbiO cobalt transport 99.6 9.9E-16 2.2E-20 89.7 6.3 64 1-64 173-239 (289)
148 PRK14261 phosphate ABC transpo 99.6 1.5E-15 3.3E-20 87.4 6.9 67 1-67 172-239 (253)
149 PRK14250 phosphate ABC transpo 99.6 1.2E-15 2.6E-20 87.4 6.5 67 1-67 154-223 (241)
150 PRK10070 glycine betaine trans 99.6 1.2E-15 2.5E-20 92.8 6.7 67 1-67 187-256 (400)
151 PRK10771 thiQ thiamine transpo 99.6 1.4E-15 3.1E-20 86.6 6.7 67 1-67 152-221 (232)
152 PRK11607 potG putrescine trans 99.6 1.1E-15 2.4E-20 92.3 6.6 69 1-69 172-243 (377)
153 PRK11831 putative ABC transpor 99.6 1.5E-15 3.3E-20 88.2 6.9 66 1-66 166-234 (269)
154 TIGR03005 ectoine_ehuA ectoine 99.6 1.4E-15 3E-20 87.5 6.6 66 1-66 169-237 (252)
155 PRK13649 cbiO cobalt transport 99.6 1.2E-15 2.7E-20 88.9 6.4 65 1-65 168-234 (280)
156 COG0411 LivG ABC-type branched 99.6 9.2E-16 2E-20 87.3 5.7 72 1-72 172-246 (250)
157 cd03264 ABC_drug_resistance_li 99.6 8.9E-16 1.9E-20 86.3 5.6 58 1-58 153-211 (211)
158 TIGR02142 modC_ABC molybdenum 99.6 1.1E-15 2.3E-20 91.7 6.3 68 1-68 154-224 (354)
159 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 1.8E-15 3.9E-20 86.4 6.9 65 1-65 155-221 (236)
160 PRK13635 cbiO cobalt transport 99.6 1.4E-15 3E-20 88.8 6.6 65 1-65 163-229 (279)
161 PRK13546 teichoic acids export 99.6 1.6E-15 3.4E-20 88.0 6.8 74 1-74 166-241 (264)
162 cd03259 ABC_Carb_Solutes_like 99.6 6.9E-16 1.5E-20 86.9 5.1 58 1-58 153-213 (213)
163 PRK11300 livG leucine/isoleuci 99.6 1.4E-15 3E-20 87.6 6.5 65 1-65 176-243 (255)
164 PRK14265 phosphate ABC transpo 99.6 1.8E-15 3.9E-20 88.1 6.9 67 1-67 184-260 (274)
165 PRK03695 vitamin B12-transport 99.6 1.2E-15 2.6E-20 87.7 6.2 65 1-65 156-222 (248)
166 PRK15112 antimicrobial peptide 99.6 1.3E-15 2.8E-20 88.4 6.3 66 1-66 172-240 (267)
167 KOG0056|consensus 99.6 7.6E-16 1.6E-20 95.3 5.4 75 1-75 697-772 (790)
168 PRK15134 microcin C ABC transp 99.6 1.1E-15 2.5E-20 95.4 6.3 66 1-66 448-516 (529)
169 PRK13642 cbiO cobalt transport 99.6 1.8E-15 3.9E-20 88.2 6.7 65 1-65 163-229 (277)
170 TIGR01978 sufC FeS assembly AT 99.6 1.4E-15 3.1E-20 86.9 6.1 63 1-63 167-232 (243)
171 PTZ00265 multidrug resistance 99.6 1.7E-15 3.7E-20 102.6 7.4 76 1-76 1381-1464(1466)
172 cd03295 ABC_OpuCA_Osmoprotecti 99.6 1.5E-15 3.3E-20 86.9 6.0 65 1-65 158-225 (242)
173 PRK14259 phosphate ABC transpo 99.6 2.3E-15 5E-20 87.5 6.8 67 1-67 177-255 (269)
174 TIGR01842 type_I_sec_PrtD type 99.6 1.7E-15 3.8E-20 94.8 6.7 65 1-65 477-542 (544)
175 cd03265 ABC_DrrA DrrA is the A 99.6 1.4E-15 3.1E-20 86.0 5.8 62 1-62 154-218 (220)
176 PRK14260 phosphate ABC transpo 99.6 2.6E-15 5.5E-20 86.8 6.9 66 1-66 173-244 (259)
177 PRK10895 lipopolysaccharide AB 99.6 1.6E-15 3.5E-20 86.7 6.0 65 1-65 160-226 (241)
178 PRK14271 phosphate ABC transpo 99.6 2.7E-15 5.9E-20 87.5 7.1 66 1-66 186-252 (276)
179 COG4559 ABC-type hemin transpo 99.6 1.1E-15 2.3E-20 86.0 5.1 66 1-66 164-231 (259)
180 PRK14246 phosphate ABC transpo 99.6 2.8E-15 6E-20 86.7 7.0 68 1-68 176-244 (257)
181 PRK13548 hmuV hemin importer A 99.6 1.6E-15 3.6E-20 87.6 6.0 65 1-65 163-230 (258)
182 cd03247 ABCC_cytochrome_bd The 99.6 1.8E-15 4E-20 83.3 5.9 57 1-57 121-177 (178)
183 PRK11124 artP arginine transpo 99.6 2.9E-15 6.2E-20 85.8 6.8 64 1-64 164-229 (242)
184 TIGR03873 F420-0_ABC_ATP propo 99.6 1.8E-15 3.8E-20 87.3 6.0 64 1-64 160-225 (256)
185 PRK14252 phosphate ABC transpo 99.6 2.4E-15 5.3E-20 87.1 6.5 65 1-65 184-249 (265)
186 cd03257 ABC_NikE_OppD_transpor 99.6 1.2E-15 2.6E-20 86.5 5.1 57 1-57 168-227 (228)
187 cd03268 ABC_BcrA_bacitracin_re 99.6 1.5E-15 3.2E-20 85.3 5.3 58 1-58 149-208 (208)
188 TIGR02323 CP_lyasePhnK phospho 99.6 2.7E-15 5.9E-20 86.3 6.6 66 1-66 171-239 (253)
189 COG1118 CysA ABC-type sulfate/ 99.6 1.3E-15 2.8E-20 89.2 5.2 70 1-70 160-232 (345)
190 PRK10418 nikD nickel transport 99.6 2.4E-15 5.2E-20 86.7 6.3 66 1-66 163-231 (254)
191 PRK14263 phosphate ABC transpo 99.6 2.8E-15 6.1E-20 86.8 6.6 67 1-67 172-247 (261)
192 PRK14241 phosphate transporter 99.6 2.8E-15 6E-20 86.6 6.5 66 1-66 171-243 (258)
193 PRK09984 phosphonate/organopho 99.6 2E-15 4.2E-20 87.4 5.8 63 1-63 175-240 (262)
194 PRK11231 fecE iron-dicitrate t 99.6 2.1E-15 4.6E-20 86.9 5.9 64 1-64 161-226 (255)
195 PRK13640 cbiO cobalt transport 99.6 2.9E-15 6.2E-20 87.6 6.4 65 1-65 166-232 (282)
196 PRK10419 nikE nickel transport 99.6 2.5E-15 5.5E-20 87.2 6.2 65 1-65 174-241 (268)
197 PRK10261 glutathione transport 99.6 1.4E-15 3E-20 96.5 5.5 65 1-65 191-258 (623)
198 PRK14266 phosphate ABC transpo 99.6 3.5E-15 7.6E-20 85.7 6.6 66 1-66 169-235 (250)
199 cd03369 ABCC_NFT1 Domain 2 of 99.6 2.8E-15 6E-20 84.2 6.1 59 1-59 148-206 (207)
200 PRK10938 putative molybdenum t 99.6 2.7E-15 5.8E-20 93.0 6.5 64 1-64 158-223 (490)
201 PRK10575 iron-hydroxamate tran 99.6 2.3E-15 5.1E-20 87.2 5.9 65 1-65 170-237 (265)
202 PRK13549 xylose transporter AT 99.6 1.3E-15 2.8E-20 94.7 5.1 63 1-63 428-492 (506)
203 PRK15134 microcin C ABC transp 99.6 2.7E-15 5.8E-20 93.7 6.5 65 1-65 179-246 (529)
204 cd03270 ABC_UvrA_I The excisio 99.6 1.9E-15 4.1E-20 86.0 5.3 58 1-58 162-226 (226)
205 PRK10253 iron-enterobactin tra 99.6 2.8E-15 6.1E-20 86.9 6.0 64 1-64 166-232 (265)
206 cd03266 ABC_NatA_sodium_export 99.6 2.1E-15 4.6E-20 85.1 5.3 57 1-57 159-217 (218)
207 cd03301 ABC_MalK_N The N-termi 99.6 1.9E-15 4.2E-20 85.0 5.0 58 1-58 153-213 (213)
208 cd03297 ABC_ModC_molybdenum_tr 99.6 1.8E-15 3.9E-20 85.3 4.9 58 1-58 154-214 (214)
209 cd03245 ABCC_bacteriocin_expor 99.6 2.8E-15 6.2E-20 84.7 5.6 57 1-57 163-219 (220)
210 PRK13547 hmuV hemin importer A 99.6 3.1E-15 6.7E-20 87.1 5.8 65 1-65 177-244 (272)
211 TIGR00968 3a0106s01 sulfate AB 99.6 7.1E-15 1.5E-19 84.0 7.2 66 1-66 153-221 (237)
212 TIGR01184 ntrCD nitrate transp 99.6 2E-15 4.3E-20 86.0 4.9 63 1-63 137-202 (230)
213 TIGR03740 galliderm_ABC gallid 99.6 3.3E-15 7.1E-20 84.6 5.7 62 1-62 147-210 (223)
214 cd03300 ABC_PotA_N PotA is an 99.6 4.9E-15 1.1E-19 84.4 6.4 66 1-66 153-221 (232)
215 PRK14258 phosphate ABC transpo 99.6 5.4E-15 1.2E-19 85.5 6.6 66 1-66 173-246 (261)
216 COG4608 AppF ABC-type oligopep 99.6 3.2E-15 6.9E-20 86.2 5.6 72 1-72 132-206 (268)
217 PRK11288 araG L-arabinose tran 99.6 2.3E-15 4.9E-20 93.5 5.3 63 1-63 419-483 (501)
218 cd03298 ABC_ThiQ_thiamine_tran 99.6 2.6E-15 5.7E-20 84.4 5.1 57 1-57 151-210 (211)
219 TIGR03771 anch_rpt_ABC anchore 99.6 3.4E-15 7.5E-20 84.7 5.5 64 1-65 136-201 (223)
220 PRK13632 cbiO cobalt transport 99.6 7.4E-15 1.6E-19 85.4 7.0 65 1-65 165-231 (271)
221 cd03299 ABC_ModC_like Archeal 99.6 5.8E-15 1.3E-19 84.3 6.2 66 1-66 152-220 (235)
222 PRK09700 D-allose transporter 99.6 2.8E-15 6.1E-20 93.3 5.2 63 1-63 168-232 (510)
223 TIGR00960 3a0501s02 Type II (G 99.6 2.1E-15 4.5E-20 85.1 4.3 54 1-54 161-216 (216)
224 PRK09580 sufC cysteine desulfu 99.6 6E-15 1.3E-19 84.6 6.2 62 1-62 168-232 (248)
225 cd03226 ABC_cobalt_CbiO_domain 99.6 2.7E-15 5.8E-20 84.1 4.6 55 1-55 149-205 (205)
226 CHL00131 ycf16 sulfate ABC tra 99.6 5.5E-15 1.2E-19 85.0 6.0 61 1-61 174-237 (252)
227 TIGR03269 met_CoM_red_A2 methy 99.6 4.8E-15 1E-19 92.4 6.0 64 1-64 450-516 (520)
228 PRK14254 phosphate ABC transpo 99.6 9.9E-15 2.1E-19 85.5 7.0 66 1-66 203-270 (285)
229 COG4172 ABC-type uncharacteriz 99.6 3.7E-15 8.1E-20 90.2 5.2 73 1-73 180-255 (534)
230 cd03293 ABC_NrtD_SsuB_transpor 99.6 4E-15 8.7E-20 84.2 5.1 59 1-59 154-217 (220)
231 COG1129 MglA ABC-type sugar tr 99.6 4.3E-15 9.3E-20 91.8 5.5 59 1-59 168-228 (500)
232 cd03269 ABC_putative_ATPase Th 99.6 4E-15 8.7E-20 83.6 5.0 57 1-57 151-209 (210)
233 PRK15439 autoinducer 2 ABC tra 99.6 3.3E-15 7.1E-20 93.0 5.0 64 1-64 426-491 (510)
234 PRK15439 autoinducer 2 ABC tra 99.6 4.4E-15 9.5E-20 92.5 5.6 64 1-64 163-228 (510)
235 TIGR02211 LolD_lipo_ex lipopro 99.6 4.1E-15 8.9E-20 84.1 5.0 55 1-55 164-220 (221)
236 cd03214 ABC_Iron-Siderophores_ 99.6 5.1E-15 1.1E-19 81.7 5.2 57 1-57 120-179 (180)
237 PRK11629 lolD lipoprotein tran 99.6 5.5E-15 1.2E-19 84.2 5.5 59 1-59 168-228 (233)
238 TIGR03269 met_CoM_red_A2 methy 99.6 5.9E-15 1.3E-19 92.0 6.0 64 1-64 191-257 (520)
239 cd03244 ABCC_MRP_domain2 Domai 99.6 7.6E-15 1.7E-19 83.0 5.9 59 1-59 162-220 (221)
240 PRK13545 tagH teichoic acids e 99.6 9.9E-15 2.2E-19 91.0 6.8 66 1-66 166-233 (549)
241 cd03216 ABC_Carb_Monos_I This 99.6 5.9E-15 1.3E-19 80.4 5.2 56 1-56 105-162 (163)
242 PRK13549 xylose transporter AT 99.6 3.6E-15 7.9E-20 92.7 4.9 63 1-63 166-230 (506)
243 COG3842 PotA ABC-type spermidi 99.6 6.3E-15 1.4E-19 88.1 5.6 71 1-71 159-232 (352)
244 PLN03232 ABC transporter C fam 99.6 1.3E-14 2.9E-19 98.6 7.8 74 1-74 763-837 (1495)
245 PRK11247 ssuB aliphatic sulfon 99.6 5.8E-15 1.3E-19 85.4 5.3 60 1-60 156-218 (257)
246 PRK10762 D-ribose transporter 99.6 4.4E-15 9.6E-20 92.3 5.1 63 1-63 418-482 (501)
247 PRK10982 galactose/methyl gala 99.6 5.9E-15 1.3E-19 91.5 5.6 63 1-63 157-221 (491)
248 PRK14264 phosphate ABC transpo 99.6 1.3E-14 2.7E-19 85.7 6.6 66 1-66 223-290 (305)
249 TIGR01277 thiQ thiamine ABC tr 99.6 8.1E-15 1.8E-19 82.6 5.5 59 1-59 151-212 (213)
250 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 7E-15 1.5E-19 83.5 5.2 58 1-58 165-224 (224)
251 cd03267 ABC_NatA_like Similar 99.6 7.7E-15 1.7E-19 83.9 5.4 58 1-58 176-236 (236)
252 PRK10762 D-ribose transporter 99.6 5.6E-15 1.2E-19 91.8 5.1 63 1-63 164-228 (501)
253 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 4.4E-15 9.6E-20 83.8 4.2 54 1-54 163-218 (218)
254 cd03291 ABCC_CFTR1 The CFTR su 99.6 3.1E-14 6.7E-19 83.4 7.8 65 1-65 182-247 (282)
255 PRK09700 D-allose transporter 99.6 9.3E-15 2E-19 91.0 5.7 60 1-60 432-493 (510)
256 PLN03130 ABC transporter C fam 99.6 2.3E-14 5E-19 97.9 7.8 74 1-74 763-837 (1622)
257 TIGR02633 xylG D-xylose ABC tr 99.6 7.1E-15 1.5E-19 91.3 5.0 62 1-62 164-227 (500)
258 cd03217 ABC_FeS_Assembly ABC-t 99.6 1.8E-14 3.8E-19 80.7 6.1 62 1-63 127-191 (200)
259 PRK10584 putative ABC transpor 99.6 1.1E-14 2.4E-19 82.7 5.4 56 1-56 169-226 (228)
260 PRK10908 cell division protein 99.5 9.5E-15 2.1E-19 82.7 5.0 56 1-56 160-217 (222)
261 cd03246 ABCC_Protease_Secretio 99.5 7.1E-15 1.5E-19 80.6 4.3 54 1-54 119-173 (173)
262 cd03232 ABC_PDR_domain2 The pl 99.5 1.3E-14 2.8E-19 80.8 5.4 58 1-58 131-192 (192)
263 cd03213 ABCG_EPDR ABCG transpo 99.5 1.5E-14 3.3E-19 80.6 5.7 57 1-57 134-193 (194)
264 cd03225 ABC_cobalt_CbiO_domain 99.5 6.7E-15 1.5E-19 82.7 4.2 53 1-53 157-211 (211)
265 cd03235 ABC_Metallic_Cations A 99.5 1.1E-14 2.3E-19 82.0 5.0 55 1-56 155-211 (213)
266 cd03271 ABC_UvrA_II The excisi 99.5 1.4E-14 3.1E-19 83.9 5.5 60 1-60 195-261 (261)
267 PRK10982 galactose/methyl gala 99.5 1.1E-14 2.5E-19 90.2 5.4 61 1-61 414-476 (491)
268 cd03292 ABC_FtsE_transporter F 99.5 7.6E-15 1.6E-19 82.6 4.2 54 1-54 159-214 (214)
269 PRK15056 manganese/iron transp 99.5 1.8E-14 3.8E-19 83.9 5.7 63 1-64 165-229 (272)
270 TIGR02633 xylG D-xylose ABC tr 99.5 1.1E-14 2.4E-19 90.4 5.1 60 1-60 426-487 (500)
271 TIGR02673 FtsE cell division A 99.5 8.5E-15 1.8E-19 82.5 4.2 53 1-53 160-214 (214)
272 PTZ00265 multidrug resistance 99.5 2.8E-14 6.2E-19 96.9 7.3 75 1-75 602-726 (1466)
273 cd03234 ABCG_White The White s 99.5 1.9E-14 4.2E-19 81.7 5.5 58 1-58 166-226 (226)
274 TIGR01257 rim_protein retinal- 99.5 2.2E-14 4.9E-19 99.4 6.5 65 1-65 1084-1149(2272)
275 PRK11248 tauB taurine transpor 99.5 1.7E-14 3.7E-19 83.3 5.1 59 1-59 151-214 (255)
276 COG3839 MalK ABC-type sugar tr 99.5 1.5E-14 3.4E-19 86.0 5.0 71 1-71 156-229 (338)
277 cd03262 ABC_HisP_GlnQ_permease 99.5 1.2E-14 2.5E-19 81.8 4.2 54 1-54 158-213 (213)
278 cd03215 ABC_Carb_Monos_II This 99.5 1.3E-14 2.9E-19 80.1 4.1 54 1-54 127-182 (182)
279 PRK11288 araG L-arabinose tran 99.5 2.4E-14 5.2E-19 89.0 5.6 59 1-59 163-223 (501)
280 PRK15177 Vi polysaccharide exp 99.5 4.7E-14 1E-18 79.7 6.2 65 1-65 127-192 (213)
281 TIGR01257 rim_protein retinal- 99.5 2.7E-14 5.8E-19 99.0 6.1 64 1-64 2093-2158(2272)
282 COG1136 SalX ABC-type antimicr 99.5 2.2E-14 4.7E-19 81.4 4.7 54 1-54 165-220 (226)
283 cd03228 ABCC_MRP_Like The MRP 99.5 2.5E-14 5.5E-19 78.3 4.8 53 1-53 119-171 (171)
284 PRK09544 znuC high-affinity zi 99.5 3.3E-14 7.3E-19 82.0 5.5 64 1-65 143-209 (251)
285 PLN03211 ABC transporter G-25; 99.5 3.6E-14 7.9E-19 90.6 6.1 64 1-64 229-295 (659)
286 cd03230 ABC_DR_subfamily_A Thi 99.5 2E-14 4.4E-19 78.8 4.2 54 1-54 118-173 (173)
287 cd03248 ABCC_TAP TAP, the Tran 99.5 2.6E-14 5.6E-19 81.1 4.7 54 1-54 173-226 (226)
288 COG4161 ArtP ABC-type arginine 99.5 6.1E-14 1.3E-18 76.6 5.8 63 1-63 164-228 (242)
289 PRK15064 ABC transporter ATP-b 99.5 4.6E-14 9.9E-19 88.3 5.8 63 1-65 461-525 (530)
290 TIGR00957 MRP_assoc_pro multi 99.5 1.2E-13 2.5E-18 94.3 7.8 73 1-73 783-858 (1522)
291 COG1116 TauB ABC-type nitrate/ 99.5 2.5E-14 5.3E-19 81.8 3.9 52 1-52 153-207 (248)
292 PRK15064 ABC transporter ATP-b 99.5 7.9E-14 1.7E-18 87.2 6.2 62 1-64 178-241 (530)
293 PRK10636 putative ABC transpor 99.5 6.8E-14 1.5E-18 89.2 5.8 61 1-63 453-515 (638)
294 PRK00349 uvrA excinuclease ABC 99.5 9E-14 1.9E-18 91.3 6.1 65 1-65 514-585 (943)
295 TIGR00955 3a01204 The Eye Pigm 99.5 1.1E-13 2.3E-18 88.0 6.0 64 1-64 189-255 (617)
296 cd03238 ABC_UvrA The excision 99.5 5.1E-14 1.1E-18 77.6 3.9 55 1-55 112-167 (176)
297 PRK10522 multidrug transporter 99.5 1.4E-13 3E-18 86.4 6.1 58 1-58 472-531 (547)
298 TIGR00630 uvra excinuclease AB 99.5 1.4E-13 3.1E-18 90.3 6.0 64 1-64 512-582 (924)
299 TIGR01271 CFTR_protein cystic 99.5 2.9E-13 6.3E-18 92.2 7.6 66 1-66 571-637 (1490)
300 PRK10247 putative ABC transpor 99.5 6.2E-14 1.4E-18 79.6 3.7 60 1-60 160-222 (225)
301 cd03229 ABC_Class3 This class 99.5 7.6E-14 1.6E-18 76.9 4.0 53 1-53 123-178 (178)
302 TIGR01194 cyc_pep_trnsptr cycl 99.5 2E-13 4.4E-18 85.8 6.0 57 1-57 493-551 (555)
303 PRK11819 putative ABC transpor 99.4 2.4E-13 5.3E-18 85.5 6.1 61 1-63 186-248 (556)
304 COG3638 ABC-type phosphate/pho 99.4 9.4E-14 2E-18 79.0 3.8 63 2-64 171-236 (258)
305 TIGR02982 heterocyst_DevA ABC 99.4 1.8E-13 3.9E-18 77.5 4.7 54 1-54 164-219 (220)
306 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 3.1E-13 6.8E-18 85.0 6.1 62 1-64 184-247 (552)
307 COG4586 ABC-type uncharacteriz 99.4 1.3E-13 2.9E-18 80.0 3.8 65 1-65 179-246 (325)
308 cd03233 ABC_PDR_domain1 The pl 99.4 3.7E-13 8.1E-18 75.5 5.5 58 1-58 141-202 (202)
309 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 2.4E-13 5.1E-18 72.8 4.4 51 1-53 93-144 (144)
310 PRK11147 ABC transporter ATPas 99.4 4.7E-13 1E-17 85.3 6.1 62 1-64 179-242 (635)
311 PRK10535 macrolide transporter 99.4 3.9E-13 8.5E-18 85.8 5.6 64 1-64 167-231 (648)
312 COG1137 YhbG ABC-type (unclass 99.4 5.3E-13 1.2E-17 74.7 5.2 70 1-70 162-233 (243)
313 PRK10636 putative ABC transpor 99.4 6.2E-13 1.3E-17 84.8 6.1 62 1-64 172-235 (638)
314 TIGR00956 3a01205 Pleiotropic 99.4 5.8E-13 1.3E-17 90.4 6.0 61 1-61 925-989 (1394)
315 PRK00349 uvrA excinuclease ABC 99.4 7.7E-13 1.7E-17 87.0 6.4 68 1-68 856-930 (943)
316 cd03237 ABC_RNaseL_inhibitor_d 99.4 6.6E-13 1.4E-17 76.5 5.3 53 1-53 138-193 (246)
317 cd03223 ABCD_peroxisomal_ALDP 99.4 6.2E-13 1.4E-17 72.6 4.8 51 1-53 114-164 (166)
318 cd03222 ABC_RNaseL_inhibitor T 99.4 4.5E-13 9.8E-18 73.9 4.0 55 1-55 94-151 (177)
319 PRK10938 putative molybdenum t 99.4 7.2E-13 1.6E-17 82.3 5.2 58 1-58 424-485 (490)
320 COG3845 ABC-type uncharacteriz 99.4 5.9E-13 1.3E-17 81.9 4.7 59 1-59 163-223 (501)
321 cd03250 ABCC_MRP_domain1 Domai 99.4 8.5E-13 1.8E-17 74.0 4.9 53 1-53 150-204 (204)
322 PLN03140 ABC transporter G fam 99.4 1.1E-12 2.5E-17 89.3 6.1 61 1-61 1042-1106(1470)
323 PLN03073 ABC transporter F fam 99.4 1.3E-12 2.8E-17 84.3 6.0 61 1-63 650-712 (718)
324 cd00267 ABC_ATPase ABC (ATP-bi 99.4 8.6E-13 1.9E-17 71.3 4.2 53 1-53 103-157 (157)
325 KOG0054|consensus 99.4 2.2E-12 4.8E-17 86.9 6.9 73 1-73 666-739 (1381)
326 PLN03073 ABC transporter F fam 99.4 1.7E-12 3.8E-17 83.7 6.1 61 1-63 367-429 (718)
327 PTZ00243 ABC transporter; Prov 99.4 2.2E-12 4.7E-17 88.4 6.7 66 1-66 805-871 (1560)
328 cd03236 ABC_RNaseL_inhibitor_d 99.4 7.2E-13 1.6E-17 76.7 3.8 55 1-56 162-218 (255)
329 KOG0059|consensus 99.4 8.1E-13 1.7E-17 86.7 4.4 66 1-66 721-788 (885)
330 TIGR00956 3a01205 Pleiotropic 99.4 1.7E-12 3.6E-17 88.2 6.0 63 1-63 232-298 (1394)
331 cd03290 ABCC_SUR1_N The SUR do 99.4 1.4E-12 3E-17 73.8 4.8 53 1-53 163-218 (218)
332 TIGR00630 uvra excinuclease AB 99.4 1.8E-12 3.9E-17 85.2 5.9 63 1-63 854-923 (924)
333 COG4618 ArpD ABC-type protease 99.4 8.5E-13 1.8E-17 81.7 4.0 65 1-65 495-560 (580)
334 PRK11819 putative ABC transpor 99.4 2.9E-12 6.3E-17 80.7 6.4 63 1-65 468-533 (556)
335 cd03279 ABC_sbcCD SbcCD and ot 99.4 1.5E-12 3.2E-17 73.6 4.6 53 1-53 156-210 (213)
336 PRK13543 cytochrome c biogenes 99.3 1.9E-12 4E-17 73.1 4.7 51 1-51 160-212 (214)
337 COG0410 LivF ABC-type branched 99.3 6.1E-12 1.3E-16 71.4 6.6 71 1-71 159-232 (237)
338 COG4604 CeuD ABC-type enteroch 99.3 2.1E-12 4.7E-17 72.3 4.7 65 1-65 158-225 (252)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 3.6E-12 7.8E-17 80.2 5.9 61 1-63 466-529 (552)
340 PRK11147 ABC transporter ATPas 99.3 3.3E-12 7.1E-17 81.5 5.8 61 1-63 463-526 (635)
341 COG1129 MglA ABC-type sugar tr 99.3 2.5E-12 5.4E-17 79.8 5.0 59 1-59 424-484 (500)
342 PRK13409 putative ATPase RIL; 99.3 1.9E-12 4E-17 82.1 4.6 58 1-59 476-536 (590)
343 PRK00635 excinuclease ABC subu 99.3 5.7E-12 1.2E-16 86.7 6.9 65 1-65 501-572 (1809)
344 TIGR02857 CydD thiol reductant 99.3 1.9E-12 4E-17 81.0 4.1 49 1-49 481-529 (529)
345 COG4148 ModC ABC-type molybdat 99.3 2.4E-12 5.2E-17 75.2 4.2 66 1-66 151-219 (352)
346 COG0396 sufC Cysteine desulfur 99.3 8E-12 1.7E-16 71.0 6.1 60 1-60 167-229 (251)
347 TIGR03608 L_ocin_972_ABC putat 99.3 2.4E-12 5.3E-17 72.1 4.0 49 1-49 157-206 (206)
348 COG4181 Predicted ABC-type tra 99.3 2.7E-12 5.8E-17 70.6 4.0 55 2-56 170-226 (228)
349 COG2884 FtsE Predicted ATPase 99.3 7.3E-12 1.6E-16 69.6 5.5 57 2-58 161-219 (223)
350 KOG0061|consensus 99.3 1.8E-12 4E-17 82.4 3.6 64 1-64 193-259 (613)
351 PLN03140 ABC transporter G fam 99.3 4.8E-12 1E-16 86.3 5.7 64 1-64 359-426 (1470)
352 COG4674 Uncharacterized ABC-ty 99.3 8.4E-12 1.8E-16 69.8 5.6 69 1-69 170-239 (249)
353 COG1119 ModF ABC-type molybden 99.3 9.8E-12 2.1E-16 71.2 6.0 59 1-59 194-256 (257)
354 PRK00635 excinuclease ABC subu 99.3 7.5E-12 1.6E-16 86.1 6.1 65 1-65 835-906 (1809)
355 cd03278 ABC_SMC_barmotin Barmo 99.3 6.3E-12 1.4E-16 70.4 4.7 51 1-51 140-190 (197)
356 PRK13409 putative ATPase RIL; 99.3 6.1E-12 1.3E-16 79.8 4.7 52 1-52 235-287 (590)
357 COG1134 TagH ABC-type polysacc 99.3 1.4E-11 3.1E-16 70.4 5.7 65 1-65 170-236 (249)
358 TIGR02324 CP_lyasePhnL phospho 99.3 4.9E-12 1.1E-16 71.7 3.5 49 1-49 172-222 (224)
359 COG4107 PhnK ABC-type phosphon 99.3 8.3E-12 1.8E-16 69.1 4.1 72 2-73 175-249 (258)
360 COG4138 BtuD ABC-type cobalami 99.3 2.9E-12 6.2E-17 70.8 2.1 65 1-65 155-221 (248)
361 cd03231 ABC_CcmA_heme_exporter 99.2 1.3E-11 2.9E-16 69.1 4.5 49 1-49 148-198 (201)
362 COG0488 Uup ATPase components 99.2 1.5E-11 3.2E-16 77.2 4.6 63 1-65 176-240 (530)
363 cd03240 ABC_Rad50 The catalyti 99.2 1.8E-11 3.8E-16 68.9 4.5 51 1-51 144-197 (204)
364 PRK13538 cytochrome c biogenes 99.2 2E-11 4.3E-16 68.5 4.6 49 1-49 152-202 (204)
365 cd03275 ABC_SMC1_euk Eukaryoti 99.2 2.2E-11 4.7E-16 70.2 4.5 51 1-51 182-233 (247)
366 PRK13539 cytochrome c biogenes 99.2 3.6E-11 7.7E-16 67.7 4.6 50 1-51 150-200 (207)
367 TIGR00954 3a01203 Peroxysomal 99.2 3.5E-11 7.6E-16 77.2 4.8 49 1-51 605-653 (659)
368 cd03274 ABC_SMC4_euk Eukaryoti 99.2 5.3E-11 1.2E-15 67.3 4.9 51 1-51 154-204 (212)
369 COG4619 ABC-type uncharacteriz 99.2 3.4E-11 7.4E-16 66.2 3.9 54 1-54 156-212 (223)
370 cd03273 ABC_SMC2_euk Eukaryoti 99.2 6.5E-11 1.4E-15 68.3 5.0 50 1-50 193-242 (251)
371 COG1101 PhnK ABC-type uncharac 99.2 8.9E-11 1.9E-15 66.6 4.9 59 1-59 171-232 (263)
372 TIGR01166 cbiO cobalt transpor 99.1 6.7E-11 1.4E-15 65.7 3.7 39 1-39 150-189 (190)
373 COG0488 Uup ATPase components 99.1 1.4E-10 2.9E-15 73.0 5.4 62 1-65 462-525 (530)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.1 1.4E-10 3E-15 66.5 4.8 50 1-50 185-234 (243)
375 cd03241 ABC_RecN RecN ATPase i 99.1 9.1E-11 2E-15 68.6 4.1 53 1-53 197-249 (276)
376 cd03277 ABC_SMC5_euk Eukaryoti 99.1 1.6E-10 3.6E-15 65.4 5.0 53 1-53 153-211 (213)
377 TIGR01189 ccmA heme ABC export 99.1 1.3E-10 2.8E-15 64.9 4.5 47 1-48 150-197 (198)
378 cd03276 ABC_SMC6_euk Eukaryoti 99.1 1.6E-10 3.5E-15 64.8 4.7 52 1-52 136-191 (198)
379 TIGR00634 recN DNA repair prot 99.1 1.1E-10 2.4E-15 73.8 4.4 53 1-53 467-519 (563)
380 PRK13541 cytochrome c biogenes 99.1 1.5E-10 3.1E-15 64.6 4.1 46 1-46 146-192 (195)
381 PRK13540 cytochrome c biogenes 99.1 1.6E-10 3.5E-15 64.7 3.8 45 1-45 150-195 (200)
382 TIGR02868 CydC thiol reductant 99.1 2.1E-10 4.5E-15 71.9 4.0 37 1-37 493-529 (529)
383 KOG0065|consensus 99.1 9.7E-11 2.1E-15 78.8 2.5 61 2-62 954-1018(1391)
384 cd03239 ABC_SMC_head The struc 99.0 4.3E-10 9.3E-15 62.2 4.6 51 1-51 121-172 (178)
385 COG0178 UvrA Excinuclease ATPa 99.0 1.5E-09 3.2E-14 70.7 7.0 68 1-68 848-922 (935)
386 cd03280 ABC_MutS2 MutS2 homolo 99.0 2.8E-10 6.1E-15 63.8 3.0 58 1-58 113-172 (200)
387 COG4525 TauB ABC-type taurine 99.0 5.8E-10 1.3E-14 62.7 3.9 57 1-57 155-216 (259)
388 PRK10869 recombination and rep 99.0 1.1E-09 2.5E-14 69.2 4.9 52 1-52 457-508 (553)
389 COG4170 SapD ABC-type antimicr 98.9 2E-09 4.4E-14 61.4 4.5 71 1-71 181-254 (330)
390 KOG0062|consensus 98.9 2E-09 4.4E-14 67.2 4.6 54 1-56 505-559 (582)
391 cd03227 ABC_Class2 ABC-type Cl 98.9 1.5E-09 3.3E-14 59.1 3.6 51 1-51 104-155 (162)
392 COG0178 UvrA Excinuclease ATPa 98.9 4.9E-09 1.1E-13 68.3 6.0 69 1-69 506-581 (935)
393 cd03243 ABC_MutS_homologs The 98.9 1.9E-09 4.2E-14 60.5 3.0 60 1-60 113-174 (202)
394 TIGR00618 sbcc exonuclease Sbc 98.8 4.8E-09 1E-13 70.3 4.7 52 1-52 983-1036(1042)
395 PHA02562 46 endonuclease subun 98.8 6.1E-09 1.3E-13 65.8 4.2 50 1-51 501-551 (562)
396 COG4167 SapF ABC-type antimicr 98.8 2E-08 4.3E-13 56.3 5.0 69 1-69 172-243 (267)
397 PRK03918 chromosome segregatio 98.8 1.2E-08 2.6E-13 67.2 4.4 51 1-51 817-868 (880)
398 KOG0927|consensus 98.7 2.2E-08 4.7E-13 63.0 4.6 64 1-65 244-309 (614)
399 PRK02224 chromosome segregatio 98.6 5.6E-08 1.2E-12 64.3 4.8 52 1-52 816-869 (880)
400 PRK01156 chromosome segregatio 98.6 4.7E-08 1E-12 64.8 4.4 50 1-50 830-883 (895)
401 TIGR02168 SMC_prok_B chromosom 98.6 2.9E-08 6.3E-13 66.5 3.5 50 1-50 1116-1165(1179)
402 KOG0927|consensus 98.6 1.3E-08 2.9E-13 64.0 1.4 59 1-61 532-592 (614)
403 cd03285 ABC_MSH2_euk MutS2 hom 98.6 3.9E-08 8.6E-13 56.1 2.3 57 1-58 114-174 (222)
404 COG4778 PhnL ABC-type phosphon 98.5 4.4E-08 9.5E-13 54.3 1.8 51 1-51 175-227 (235)
405 TIGR02169 SMC_prok_A chromosom 98.5 1.5E-07 3.3E-12 63.3 4.6 51 1-51 1101-1151(1164)
406 cd03242 ABC_RecF RecF is a rec 98.5 1.9E-07 4E-12 54.7 4.4 51 1-54 215-269 (270)
407 COG4136 ABC-type uncharacteriz 98.5 2E-07 4.3E-12 50.9 3.9 49 1-49 157-207 (213)
408 KOG0062|consensus 98.5 2.1E-08 4.5E-13 62.8 -0.2 63 1-65 221-285 (582)
409 COG4178 ABC-type uncharacteriz 98.5 1.3E-07 2.9E-12 60.3 3.3 50 1-50 538-587 (604)
410 cd03283 ABC_MutS-like MutS-lik 98.5 1.8E-07 3.9E-12 52.6 3.1 41 1-41 110-152 (199)
411 PF02463 SMC_N: RecF/RecN/SMC 98.5 4.3E-07 9.2E-12 51.5 4.5 50 1-50 163-212 (220)
412 COG1245 Predicted ATPase, RNas 98.5 2.8E-07 6E-12 57.5 3.9 50 1-50 236-287 (591)
413 COG3845 ABC-type uncharacteriz 98.4 3.5E-07 7.7E-12 57.0 4.1 62 1-62 426-489 (501)
414 KOG2355|consensus 98.4 5.9E-07 1.3E-11 51.3 4.6 61 1-61 170-233 (291)
415 COG4133 CcmA ABC-type transpor 98.4 8.8E-07 1.9E-11 49.6 5.2 41 1-41 153-194 (209)
416 COG3910 Predicted ATPase [Gene 98.4 1.2E-06 2.5E-11 49.3 5.3 54 1-54 151-206 (233)
417 PRK10246 exonuclease subunit S 98.4 4.1E-07 8.9E-12 61.4 4.1 51 1-51 980-1032(1047)
418 COG0419 SbcC ATPase involved i 98.4 5.2E-07 1.1E-11 60.2 4.4 51 1-51 846-897 (908)
419 smart00534 MUTSac ATPase domai 98.3 4.6E-07 9.9E-12 50.4 2.7 44 1-44 83-129 (185)
420 cd03284 ABC_MutS1 MutS1 homolo 98.3 3.9E-07 8.5E-12 51.9 1.5 56 1-57 114-173 (216)
421 TIGR00606 rad50 rad50. This fa 98.2 1.2E-06 2.7E-11 60.3 3.4 41 1-41 1228-1274(1311)
422 PRK13830 conjugal transfer pro 98.2 1.5E-06 3.3E-11 57.5 3.6 58 1-58 657-726 (818)
423 COG4615 PvdE ABC-type sideroph 98.2 5.3E-07 1.2E-11 55.6 0.7 59 1-59 471-531 (546)
424 PRK00064 recF recombination pr 98.2 4.5E-06 9.7E-11 50.8 4.6 52 1-54 305-359 (361)
425 KOG0066|consensus 98.1 5.7E-06 1.2E-10 52.0 4.8 53 1-55 727-780 (807)
426 COG1245 Predicted ATPase, RNas 98.1 5.8E-06 1.3E-10 51.9 4.3 50 1-50 478-530 (591)
427 KOG0066|consensus 98.1 3.7E-07 8.1E-12 57.1 -0.8 61 1-63 435-497 (807)
428 KOG0065|consensus 98.1 1.1E-05 2.3E-10 55.6 5.1 64 1-64 283-350 (1391)
429 cd01124 KaiC KaiC is a circadi 97.9 1.6E-05 3.5E-10 43.8 3.6 50 1-50 100-163 (187)
430 cd03282 ABC_MSH4_euk MutS4 hom 97.9 1E-05 2.2E-10 45.8 2.9 42 1-42 113-156 (204)
431 PF13304 AAA_21: AAA domain; P 97.9 2.5E-05 5.5E-10 44.0 3.8 40 1-40 262-302 (303)
432 cd03281 ABC_MSH5_euk MutS5 hom 97.8 3E-05 6.6E-10 44.1 3.0 42 1-42 113-159 (213)
433 KOG0060|consensus 97.7 6.2E-05 1.3E-09 48.4 3.7 49 1-51 593-641 (659)
434 PRK00409 recombination and DNA 97.6 4.3E-05 9.3E-10 50.7 2.7 42 1-42 412-455 (782)
435 PRK07721 fliI flagellum-specif 97.6 0.00039 8.6E-09 43.6 6.6 57 5-62 276-340 (438)
436 TIGR01069 mutS2 MutS2 family p 97.5 9.8E-05 2.1E-09 49.0 3.2 40 1-40 407-448 (771)
437 cd03286 ABC_MSH6_euk MutS6 hom 97.5 8.3E-05 1.8E-09 42.6 2.3 41 1-41 114-157 (218)
438 TIGR00611 recf recF protein. A 97.5 0.00014 3.1E-09 44.5 3.4 39 1-41 307-345 (365)
439 PF13175 AAA_15: AAA ATPase do 97.5 0.00021 4.6E-09 43.6 3.8 39 1-39 374-414 (415)
440 TIGR02858 spore_III_AA stage I 97.4 0.00017 3.7E-09 42.6 3.2 53 1-61 199-265 (270)
441 COG0497 RecN ATPase involved i 97.4 0.00028 6E-09 45.3 4.0 51 1-51 458-508 (557)
442 PRK08699 DNA polymerase III su 97.4 0.0002 4.3E-09 43.3 3.2 41 1-41 117-157 (325)
443 COG2401 ABC-type ATPase fused 97.4 0.00046 1E-08 43.4 4.5 55 1-55 530-588 (593)
444 PRK13891 conjugal transfer pro 97.3 0.00022 4.8E-09 47.8 2.7 41 1-41 692-734 (852)
445 KOG0063|consensus 97.3 0.0005 1.1E-08 43.4 4.0 50 1-50 236-287 (592)
446 PRK13695 putative NTPase; Prov 97.3 0.00015 3.3E-09 39.8 1.5 56 1-59 101-158 (174)
447 PRK14079 recF recombination pr 97.2 0.00079 1.7E-08 41.0 4.5 50 1-55 295-344 (349)
448 cd03287 ABC_MSH3_euk MutS3 hom 97.2 0.00042 9.1E-09 39.8 3.1 40 1-40 115-157 (222)
449 TIGR02680 conserved hypothetic 97.2 0.00051 1.1E-08 48.2 3.4 36 1-38 1282-1317(1353)
450 COG1196 Smc Chromosome segrega 97.1 0.00032 6.9E-09 48.4 2.0 47 1-47 1093-1139(1163)
451 PRK13873 conjugal transfer ATP 97.0 0.00056 1.2E-08 45.7 2.5 40 1-40 640-681 (811)
452 PRK08533 flagellar accessory p 97.0 0.0012 2.5E-08 38.1 3.5 38 1-39 122-164 (230)
453 PRK13898 type IV secretion sys 96.6 0.0021 4.5E-08 43.1 2.6 40 1-40 647-688 (800)
454 PTZ00132 GTP-binding nuclear p 96.5 0.0035 7.5E-08 35.4 2.7 25 1-25 175-204 (215)
455 cd01120 RecA-like_NTPases RecA 96.4 0.014 3.1E-07 31.0 4.7 40 1-40 90-140 (165)
456 PF13166 AAA_13: AAA domain 96.2 0.0074 1.6E-07 39.8 3.6 40 1-40 532-574 (712)
457 KOG0064|consensus 96.1 0.0054 1.2E-07 39.8 2.5 40 1-42 635-674 (728)
458 PRK06067 flagellar accessory p 96.1 0.0059 1.3E-07 35.1 2.3 50 1-50 125-186 (234)
459 COG4637 Predicted ATPase [Gene 96.0 0.017 3.7E-07 35.3 4.2 50 1-50 295-346 (373)
460 KOG0962|consensus 95.5 0.017 3.6E-07 40.7 3.0 39 2-40 1213-1257(1294)
461 cd01128 rho_factor Transcripti 95.2 0.016 3.5E-07 34.0 2.1 49 5-55 162-212 (249)
462 TIGR03185 DNA_S_dndD DNA sulfu 95.2 0.023 5E-07 37.4 2.8 38 1-40 579-617 (650)
463 PRK05399 DNA mismatch repair p 94.5 0.032 7E-07 38.0 2.3 38 1-40 691-733 (854)
464 KOG0964|consensus 94.4 0.019 4.1E-07 39.5 1.0 50 1-50 1124-1173(1200)
465 TIGR03880 KaiC_arch_3 KaiC dom 93.6 0.27 5.9E-06 28.0 4.6 42 9-50 125-177 (224)
466 KOG0063|consensus 93.3 0.058 1.3E-06 34.6 1.7 51 1-51 479-532 (592)
467 cd01125 repA Hexameric Replica 93.2 0.12 2.7E-06 29.8 2.8 33 8-40 128-162 (239)
468 PF13514 AAA_27: AAA domain 91.7 0.28 6E-06 34.5 3.4 41 1-41 1056-1096(1111)
469 PF00488 MutS_V: MutS domain V 91.6 0.32 7E-06 28.3 3.2 40 1-40 127-169 (235)
470 cd00561 CobA_CobO_BtuR ATP:cor 91.3 0.17 3.8E-06 27.8 1.8 51 1-51 100-154 (159)
471 COG4694 Uncharacterized protei 91.1 0.38 8.2E-06 31.8 3.3 39 1-39 560-599 (758)
472 PRK07414 cob(I)yrinic acid a,c 91.0 0.19 4.1E-06 28.2 1.8 52 1-52 120-175 (178)
473 TIGR00929 VirB4_CagE type IV s 90.7 0.26 5.7E-06 33.1 2.5 40 1-40 634-675 (785)
474 COG3593 Predicted ATP-dependen 90.2 0.82 1.8E-05 30.3 4.3 50 1-50 306-357 (581)
475 PF12846 AAA_10: AAA-like doma 90.1 0.22 4.8E-06 29.1 1.7 41 1-41 225-267 (304)
476 TIGR03783 Bac_Flav_CT_G Bacter 90.0 0.28 6.1E-06 33.6 2.2 41 1-41 670-712 (829)
477 KOG0996|consensus 89.6 0.17 3.8E-06 35.7 1.1 50 1-50 1222-1271(1293)
478 TIGR00152 dephospho-CoA kinase 89.6 1.6 3.5E-05 24.2 4.8 48 6-53 83-134 (188)
479 PRK09302 circadian clock prote 88.9 0.73 1.6E-05 29.7 3.4 46 5-50 142-200 (509)
480 TIGR00708 cobA cob(I)alamin ad 88.4 0.34 7.3E-06 27.1 1.5 51 1-51 102-156 (173)
481 PRK14088 dnaA chromosomal repl 87.7 0.21 4.6E-06 31.7 0.5 61 1-61 199-264 (440)
482 COG1195 RecF Recombinational D 87.1 1.2 2.6E-05 27.9 3.4 51 1-54 307-361 (363)
483 TIGR02655 circ_KaiC circadian 86.6 2.4 5.2E-05 27.4 4.7 38 13-50 142-190 (484)
484 TIGR02746 TraC-F-type type-IV 86.4 0.6 1.3E-05 31.6 2.0 40 1-40 642-685 (797)
485 TIGR02788 VirB11 P-type DNA tr 86.1 0.17 3.6E-06 30.6 -0.6 57 1-64 223-280 (308)
486 KOG0933|consensus 85.9 0.75 1.6E-05 32.4 2.3 46 1-46 1109-1154(1174)
487 TIGR01070 mutS1 DNA mismatch r 85.8 0.96 2.1E-05 31.2 2.8 40 1-40 676-718 (840)
488 COG4938 Uncharacterized conser 85.5 1.2 2.5E-05 27.4 2.7 37 1-37 265-302 (374)
489 PRK13721 conjugal transfer ATP 85.4 0.62 1.3E-05 32.0 1.8 41 1-41 664-708 (844)
490 PF00837 T4_deiodinase: Iodoth 85.4 5.7 0.00012 23.5 6.3 54 21-74 176-233 (237)
491 PF05707 Zot: Zonular occluden 85.3 0.61 1.3E-05 26.2 1.5 50 1-50 84-144 (193)
492 PRK05986 cob(I)alamin adenolsy 85.3 0.45 9.8E-06 27.1 0.9 51 1-51 120-174 (191)
493 TIGR03881 KaiC_arch_4 KaiC dom 84.1 3.6 7.8E-05 23.5 4.3 25 26-50 155-188 (229)
494 PRK07471 DNA polymerase III su 83.7 1.7 3.7E-05 27.1 3.0 39 1-40 146-184 (365)
495 PRK13853 type IV secretion sys 83.7 1 2.2E-05 30.8 2.2 52 1-52 632-695 (789)
496 PF02572 CobA_CobO_BtuR: ATP:c 81.5 0.64 1.4E-05 26.0 0.6 51 1-51 101-155 (172)
497 COG4717 Uncharacterized conser 81.1 4.5 9.7E-05 28.4 4.3 49 1-49 931-981 (984)
498 KOG0018|consensus 79.9 2.2 4.7E-05 30.4 2.6 49 1-51 1078-1126(1141)
499 TIGR00416 sms DNA repair prote 78.6 11 0.00024 24.4 5.3 28 26-53 211-247 (454)
500 PF09818 ABC_ATPase: Predicted 78.6 6.2 0.00013 25.6 4.2 29 27-55 388-417 (448)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=8.4e-21 Score=106.23 Aligned_cols=69 Identities=23% Similarity=0.409 Sum_probs=62.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||||||||.....+...+..++. |.|.++|||++.++.. +|||++|++|++++.|++.++..++.+
T Consensus 159 LFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~ 229 (240)
T COG1126 159 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKS 229 (240)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCC
Confidence 58999999999999999999988765 9999999999999977 999999999999999999998876554
No 2
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.9e-20 Score=111.98 Aligned_cols=75 Identities=37% Similarity=0.579 Sum_probs=69.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+|||||.+||+.+...+...+....+++|+|+|||++..++.+|+|++|++|++++.|++.++..+.+.++.+.+
T Consensus 497 lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 497 LLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred EecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 589999999999999999999988899999999999999999999999999999999999999887677766543
No 3
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.5e-20 Score=112.68 Aligned_cols=76 Identities=41% Similarity=0.629 Sum_probs=71.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
+|||||++||.+++..+.+.+.+..+++|++++||++..+..+|+|++|++|++++.|++.++..+.+.+..++++
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999998888888888765
No 4
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.78 E-value=5.6e-19 Score=112.68 Aligned_cols=76 Identities=47% Similarity=0.689 Sum_probs=70.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
+||||||+||+.+++.+.+.+.+...++|+|+|+|++..+..||++++|++|+++++|+..++....+.+..++++
T Consensus 632 lLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~ 707 (709)
T COG2274 632 LLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ 707 (709)
T ss_pred EEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhc
Confidence 6999999999999999999999998899999999999999999999999999999999999998887777777654
No 5
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.77 E-value=8.4e-19 Score=100.47 Aligned_cols=71 Identities=27% Similarity=0.424 Sum_probs=63.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
+||||++||||.++..+++.+....+ ++|+||||||++++.. +|++.+|+.|+++..++|.+++.++.+-+
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 58999999999999999988876643 9999999999999865 99999999999999999999988777633
No 6
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.77 E-value=9.3e-19 Score=102.49 Aligned_cols=73 Identities=27% Similarity=0.398 Sum_probs=65.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL 73 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 73 (79)
|-||||+|||...+.++.+++..+.+ +.++|+||||+..+.. ||+|.+|..|++++.|+..++..++.+-++.
T Consensus 176 IADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~ 251 (316)
T COG0444 176 IADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTR 251 (316)
T ss_pred EeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHH
Confidence 45999999999999999999988753 9999999999999866 9999999999999999999998888775543
No 7
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=2.2e-18 Score=97.82 Aligned_cols=74 Identities=26% Similarity=0.404 Sum_probs=64.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+|||||++|||.....+.+++..+.. +.|+++||||++.+.. ||+++++.+|+++..|++.++......+-..+
T Consensus 168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf 244 (263)
T COG1127 168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQF 244 (263)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHH
Confidence 48999999999999999999988754 9999999999999966 99999999999999999999877555544443
No 8
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.77 E-value=2e-18 Score=108.47 Aligned_cols=76 Identities=36% Similarity=0.500 Sum_probs=69.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
+||||||+||+.+...+.+.+.+..+++|+|+|||+++.+..+|+++++++|++++.|++.++....+.+..++..
T Consensus 508 iLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~ 583 (588)
T PRK11174 508 LLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHH
Confidence 6999999999999999999998887899999999999988889999999999999999999998877777777654
No 9
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.75 E-value=4.5e-18 Score=106.61 Aligned_cols=76 Identities=54% Similarity=0.744 Sum_probs=69.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
|||||||++|+.++..+.+.+....+++|+++|+|+++.+..+|+++++++|++++.|++.++....+.+..++..
T Consensus 488 ILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~ 563 (567)
T COG1132 488 ILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQA 563 (567)
T ss_pred EEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence 6999999999999999999998777788999999999999889999999999999999999999887778877654
No 10
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.7e-18 Score=97.44 Aligned_cols=66 Identities=24% Similarity=0.443 Sum_probs=59.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
|||||||+||+..+..+.+.+..+.. ++|+|++||+++++.. +|++++|++|+++.+|++.++..+
T Consensus 161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 69999999999999999999988754 6899999999999976 999999999999999998887664
No 11
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=7.8e-18 Score=105.95 Aligned_cols=75 Identities=40% Similarity=0.673 Sum_probs=68.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.+...+.+.+.....++|+|++||++..+..+|++++|++|++++.|++.++....+.+..++.
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 573 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQ 573 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHH
Confidence 689999999999999999999888778999999999998888999999999999999999998877777777654
No 12
>KOG0055|consensus
Probab=99.75 E-value=7.8e-18 Score=110.90 Aligned_cols=75 Identities=51% Similarity=0.751 Sum_probs=71.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+..+..+++.++...+|+|.|+|+|+++.+..+|+++++++|++++.|.+.++....+.+..+++
T Consensus 512 LLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~ 586 (1228)
T KOG0055|consen 512 LLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVR 586 (1228)
T ss_pred EecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHH
Confidence 589999999999999999999999999999999999999988999999999999999999999987788888875
No 13
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.74 E-value=9.5e-18 Score=97.71 Aligned_cols=76 Identities=17% Similarity=0.339 Sum_probs=66.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
||||||++||+.+...+.+.+.+...++|+|+++|+++.+..||++++|++|++++.|++.++......+..++.+
T Consensus 161 llDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 6899999999999999999998876789999999999888679999999999999999999988765555555543
No 14
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.74 E-value=1.1e-17 Score=105.08 Aligned_cols=75 Identities=51% Similarity=0.692 Sum_probs=67.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.+...+.+.+....+++|+|+|||+++.+..+|+|+++++|++++.|+++++.+..+.+..++.
T Consensus 503 ilDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~ 577 (582)
T PRK11176 503 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHK 577 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHH
Confidence 689999999999999999998887778999999999998888999999999999999999998877666776654
No 15
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.74 E-value=1.1e-17 Score=113.27 Aligned_cols=77 Identities=29% Similarity=0.556 Sum_probs=70.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQ 77 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (79)
|||||||+||+.+...+++.++...+++|+|+|+|+++.+..+|+|++|++|++++.|++.++.++.+.++.++++.
T Consensus 1444 iLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1444 VLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDA 1520 (1522)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHc
Confidence 69999999999999999999998888999999999999999999999999999999999999987777787776543
No 16
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.5e-18 Score=96.99 Aligned_cols=67 Identities=36% Similarity=0.459 Sum_probs=60.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
|+|||||+||+..+..+.+++....+ +.|.|||+|++..+.. |||+++|++|.+++.++..++...+
T Consensus 164 IlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~ 233 (252)
T COG1124 164 ILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHP 233 (252)
T ss_pred EecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCC
Confidence 68999999999999999999987764 7799999999999987 9999999999999999988876653
No 17
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.3e-18 Score=99.49 Aligned_cols=69 Identities=29% Similarity=0.472 Sum_probs=61.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+.|||||||||.+...+..++.... + |.|+++|||.|+.+.. ||+|.+|++|++++.|+..++..++.+
T Consensus 164 L~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~ 235 (339)
T COG1135 164 LCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKH 235 (339)
T ss_pred EecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcch
Confidence 3699999999999999999888764 3 9999999999999977 999999999999999998888766544
No 18
>PLN03232 ABC transporter C family member; Provisional
Probab=99.73 E-value=1.7e-17 Score=112.31 Aligned_cols=76 Identities=28% Similarity=0.532 Sum_probs=69.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccc-hHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKG-HYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~-~~~~~~~~ 76 (79)
|||||||+||+.++..+++.+++..+++|+|+|+|+++.+..+|+|++|++|++++.|++.++.++.+ .++.+++.
T Consensus 1394 ILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~ 1470 (1495)
T PLN03232 1394 VLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHS 1470 (1495)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 69999999999999999999998888999999999999998899999999999999999999987664 57766653
No 19
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=8.8e-18 Score=98.68 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=61.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
+||||+|+|||--+..++.-+.++. . ++|++|||||++++.+ .+|+.+|++|+++..|+|.++..++.+-+
T Consensus 187 LMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 187 LMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence 5899999999998888877665553 3 8999999999999977 99999999999999999999988777633
No 20
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.73 E-value=5.3e-18 Score=105.04 Aligned_cols=71 Identities=31% Similarity=0.433 Sum_probs=64.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
|+||||++||+.++.++.+++..+. .+.++|+|||++..+.. ||++++|++|++++.|+..+++.++.+-+
T Consensus 177 IaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpY 250 (539)
T COG1123 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPY 250 (539)
T ss_pred EECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcc
Confidence 5899999999999999999998875 39999999999999976 99999999999999999999988777643
No 21
>PLN03130 ABC transporter C family member; Provisional
Probab=99.73 E-value=2.2e-17 Score=112.25 Aligned_cols=76 Identities=30% Similarity=0.519 Sum_probs=69.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc-cchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK-KGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~~ 76 (79)
|||||||+||+.+...+++.+++..+++|+|+|+|+++.+..||+|++|++|++++.|++.++.+. .+.++.+++.
T Consensus 1397 ILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~ 1473 (1622)
T PLN03130 1397 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQS 1473 (1622)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHH
Confidence 699999999999999999999988889999999999999989999999999999999999999875 4567776653
No 22
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.72 E-value=8.1e-18 Score=96.77 Aligned_cols=65 Identities=29% Similarity=0.404 Sum_probs=59.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+||||||+||...+..+++++.+.. + +.|+|++.||++.+.+ ||+++.|++|+++..|.+.++..
T Consensus 161 LLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred EeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 5899999999999999999998875 3 8999999999998876 99999999999999999988764
No 23
>KOG0055|consensus
Probab=99.72 E-value=2e-17 Score=109.04 Aligned_cols=77 Identities=55% Similarity=0.821 Sum_probs=73.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQ 77 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (79)
+|||+|||||.+..+.+++.++....++|.|+|+|+++.+..||.+.++++|++++.|++.++....+.++.+++..
T Consensus 1149 LLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1149 LLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred eeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999888899888754
No 24
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.72 E-value=3.3e-17 Score=103.00 Aligned_cols=75 Identities=37% Similarity=0.637 Sum_probs=68.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
|||||||+||+.++..+.+.+....+++|+|+++|+++.+..+|+++++++|++++.|++.++....+.+..++.
T Consensus 498 ilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 589999999999999999999888789999999999999888999999999999999999999887777776654
No 25
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.72 E-value=3.3e-17 Score=104.67 Aligned_cols=76 Identities=51% Similarity=0.756 Sum_probs=69.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
+||||||+||+.++..+.+.+.....++|+|++||+++.+..+|++++|++|++++.|++.++....+.+..++..
T Consensus 616 ilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 691 (694)
T TIGR01846 616 IFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQ 691 (694)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHh
Confidence 5899999999999999999998887789999999999998789999999999999999999998777777777653
No 26
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.72 E-value=2.2e-17 Score=91.06 Aligned_cols=69 Identities=23% Similarity=0.401 Sum_probs=62.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||||+|||.....+...++.+++ |+|.+++||.+.++.. ...|+++.+|.+.++|+|..+..++..
T Consensus 175 LFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~S 245 (256)
T COG4598 175 LFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245 (256)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCCC
Confidence 58999999999999999999988865 9999999999999977 899999999999999999998765443
No 27
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.72 E-value=2.5e-17 Score=97.94 Aligned_cols=69 Identities=25% Similarity=0.411 Sum_probs=61.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
|+||||++||+..+..+.+++..+.+ +.|+|+|||++..+.. +|++++|++|++++.|+..++..++.+
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~ 255 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSH 255 (330)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCC
Confidence 68999999999999999998887743 8899999999999865 999999999999999998888765544
No 28
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=6.1e-18 Score=94.88 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=64.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||||+|||.....+.+++.++.+..|+++|||.|..+.+ .|+..++..|++++.|+...+..++..
T Consensus 172 LmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~ 241 (253)
T COG1117 172 LMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKH 241 (253)
T ss_pred EecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccH
Confidence 589999999999999999999999899999999999999987 899999999999999999998876655
No 29
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.71 E-value=5.3e-17 Score=103.63 Aligned_cols=73 Identities=42% Similarity=0.620 Sum_probs=65.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.++..+.+.+... ++|+|+|||+++.+..+|++++|++|++++.|++.++....+.+..++.
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~ 683 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 689999999999999999888765 5899999999999988999999999999999999998876666766654
No 30
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3.1e-17 Score=97.55 Aligned_cols=68 Identities=26% Similarity=0.331 Sum_probs=60.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG 68 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 68 (79)
||||||++||+..+..+.+++.++.. +.|+|+|||++..+.. ||++++|++|++++.|+..++..++.
T Consensus 181 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p~ 251 (330)
T PRK15093 181 IADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPH 251 (330)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 68999999999999999999988653 8899999999999965 99999999999999999888765443
No 31
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.71 E-value=6e-17 Score=102.02 Aligned_cols=75 Identities=41% Similarity=0.686 Sum_probs=67.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.++..+.+.+.+..+++|+|+++|+++.+..+|+++++++|++.+.|+..++....+.+..++.
T Consensus 494 ilDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 568 (585)
T TIGR01192 494 VLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLR 568 (585)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHH
Confidence 689999999999999999999887779999999999999877999999999999999999998877777776654
No 32
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.5e-17 Score=97.24 Aligned_cols=69 Identities=26% Similarity=0.353 Sum_probs=60.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
|+||||++||+..+..+.+++..+. .+.|+|++||++..+.. +|++++|.+|++++.|+..++..++.+
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~h 247 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRH 247 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCC
Confidence 5899999999999999999988774 38899999999999865 999999999999999998887765443
No 33
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.2e-17 Score=96.97 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=63.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+|||||++||+.+...+.+.+....+++|+|++||+++.+.. ||++++|++|++++.|.+.++...+..
T Consensus 248 LLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~ 317 (329)
T PRK14257 248 LMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKN 317 (329)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCc
Confidence 689999999999999999999888778999999999999977 999999999999999999998765554
No 34
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.71 E-value=3.2e-17 Score=96.69 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=59.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++.. +.|+|++||+++++.. ||++++|++|+++..|++.++..
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 58999999999999999999988754 8999999999999976 99999999999999999887753
No 35
>PTZ00243 ABC transporter; Provisional
Probab=99.71 E-value=4.8e-17 Score=110.39 Aligned_cols=76 Identities=29% Similarity=0.486 Sum_probs=68.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc-cchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK-KGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~~ 76 (79)
|||||||+||+.+...+++.+....+++|+|+|+|+++.+..+|+|++|++|++++.|++.++..+ .+.++.++..
T Consensus 1469 lLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~ 1545 (1560)
T PTZ00243 1469 LMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545 (1560)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 699999999999999999999988889999999999999989999999999999999999999864 5667776643
No 36
>KOG0057|consensus
Probab=99.71 E-value=7.2e-17 Score=99.76 Aligned_cols=76 Identities=37% Similarity=0.549 Sum_probs=68.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
+||||||+||..++..+...+.....++|+|+|.|+++.+..||+|+++++|++.+.|+..++......+..++..
T Consensus 510 ~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 510 LLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred EecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 5899999999999999988888877899999999999999999999999999999999999998855556666643
No 37
>KOG0058|consensus
Probab=99.71 E-value=3.4e-17 Score=103.48 Aligned_cols=76 Identities=55% Similarity=0.771 Sum_probs=70.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhcc-chHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKK-GHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~~~~~ 76 (79)
||||+|||||.+.+..+++.+.+...++|+|+|.|+++.+..+|+|.++++|++.+.|++.++.+.. +.++.+++.
T Consensus 627 ILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~ 703 (716)
T KOG0058|consen 627 ILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQR 703 (716)
T ss_pred EEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHH
Confidence 6999999999999999999999888899999999999999999999999999999999999998877 567777653
No 38
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.71 E-value=4.6e-17 Score=104.16 Aligned_cols=72 Identities=40% Similarity=0.674 Sum_probs=64.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+||||||+||+.++..+.+.+.. .++|+|+|||+++.+..+|++++|++|++++.|++.++....+.+..++
T Consensus 638 iLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 638 ILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred EEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 68999999999999999888875 4899999999999998899999999999999999999887666666544
No 39
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.71 E-value=5.4e-17 Score=109.86 Aligned_cols=76 Identities=14% Similarity=0.301 Sum_probs=68.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
|||||||+||+.+...+++.+....+++|+|+|+|+++.+..+|+|++|++|++++.|++.++....+.++.++..
T Consensus 1376 lLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~ 1451 (1490)
T TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSA 1451 (1490)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHH
Confidence 6999999999999999999999888899999999999999889999999999999999999988655667766653
No 40
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.71 E-value=4.3e-17 Score=97.36 Aligned_cols=66 Identities=24% Similarity=0.468 Sum_probs=59.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+||||||+||+.++..+.+++....+ +.|+|++||+++.+.. ||++++|++|++++.|++.++...
T Consensus 163 LlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 163 LCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 58999999999999999999988743 8999999999999966 999999999999999998887654
No 41
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.71 E-value=6.3e-17 Score=103.56 Aligned_cols=74 Identities=35% Similarity=0.606 Sum_probs=65.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.++..+.+.+... .++|+|+|+|+++.+..+|++++|++|++++.|++.++....+.+..++.
T Consensus 634 iLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred EEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 689999999999999998888764 68999999999998888999999999999999999998876666766654
No 42
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.70 E-value=6.5e-17 Score=101.80 Aligned_cols=75 Identities=47% Similarity=0.683 Sum_probs=66.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
|||||||+||+.+...+.+.+.....++|+|+|||+++.+..+|++++|++|++.+.|++.++....+.+..++.
T Consensus 494 iLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 568 (588)
T PRK13657 494 ILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLR 568 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHH
Confidence 689999999999999999988877678999999999998888999999999999999999888766556666543
No 43
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.70 E-value=1e-16 Score=91.41 Aligned_cols=73 Identities=52% Similarity=0.781 Sum_probs=63.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL 73 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 73 (79)
+|||||++||+..+..+.+.+.....++|+|+++|+++.+..||+++++++|+++..+++.++......+..+
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 6899999999999999999998876689999999999988669999999999999999888876654444443
No 44
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.70 E-value=4.2e-17 Score=95.73 Aligned_cols=65 Identities=28% Similarity=0.436 Sum_probs=58.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-C-CEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-G-RTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~-~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++|||..+..+.+++..+.. + .|++++||.++.+.. ||+++++++|+++..|+..++..
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 69999999999999999999998865 5 799999999999977 99999999999999998777543
No 45
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.1e-17 Score=98.21 Aligned_cols=75 Identities=48% Similarity=0.677 Sum_probs=69.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+|||+||+||.++++.++..+.....++|.++|.|+++.+..+|.++++++|+|++.|+..+++...+.+..+|+
T Consensus 422 ~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 422 ILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred EEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 589999999999999999999999999999999999999999999999999999999999999988777776664
No 46
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.70 E-value=5.6e-17 Score=96.54 Aligned_cols=69 Identities=28% Similarity=0.380 Sum_probs=60.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
|+||||++||+..+..+.+++..+.+ +.|+|++||++..+.. ||++++|.+|++++.|+..++..++..
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~ 255 (331)
T PRK15079 184 ICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLH 255 (331)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCC
Confidence 68999999999999999999887643 8899999999999976 999999999999999998887655443
No 47
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.9e-17 Score=90.67 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=59.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
|||||||+||..+...+.+.+.+... ++++||.+|.++++.. ||+|+++.+|+++..|+...+.
T Consensus 156 vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~ 221 (245)
T COG4555 156 VLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221 (245)
T ss_pred EEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHH
Confidence 69999999999999999999988865 9999999999999975 9999999999999999987764
No 48
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.70 E-value=1e-16 Score=100.70 Aligned_cols=75 Identities=35% Similarity=0.514 Sum_probs=67.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.+...+.+.+.....++|+|+++|+++.+..+|+++++++|++.+.|+..++....+.+..++.
T Consensus 474 llDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 548 (569)
T PRK10789 474 ILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYR 548 (569)
T ss_pred EEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHH
Confidence 689999999999999999999887779999999999998888999999999999999999998876666666553
No 49
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=6.8e-17 Score=96.05 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=60.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
|+||||++||+..+..+.+++.++.. +.|+|+|||++..+.. ||++++|.+|++++.|+..++..++.+
T Consensus 177 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~h 248 (327)
T PRK11308 177 VADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRH 248 (327)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCC
Confidence 68999999999999999998887643 8899999999999975 999999999999999998887665443
No 50
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.69 E-value=6.3e-17 Score=103.40 Aligned_cols=65 Identities=31% Similarity=0.472 Sum_probs=60.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+||||||+||+.+...+.+.+.....++|+|+|||+++.+..+|++++|++|++++.|++.++.+
T Consensus 624 iLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 624 LLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 68999999999999999999988878999999999999888899999999999999999988754
No 51
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.69 E-value=6.7e-17 Score=100.24 Aligned_cols=71 Identities=31% Similarity=0.399 Sum_probs=62.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
|+|||||+||+..+..+.+++..+.. +.|.|||+||+..+.. ||+|.+|++|+|++.|+...+...+.+-+
T Consensus 452 i~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Y 525 (539)
T COG1123 452 ILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPY 525 (539)
T ss_pred EecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChH
Confidence 58999999999999999999887753 8999999999999977 99999999999999998777777655533
No 52
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.69 E-value=6.9e-17 Score=96.42 Aligned_cols=65 Identities=25% Similarity=0.448 Sum_probs=59.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++. .+.|+|++||+++++.. ||++++|++|+++..|++.++..
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 6899999999999999999998875 48999999999999976 99999999999999999887643
No 53
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.69 E-value=1.3e-16 Score=100.00 Aligned_cols=74 Identities=58% Similarity=0.792 Sum_probs=65.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+||||||+||+.+...+.+.+....+++|+|+|||++.....||+++++++|++.+.|+++++......+..+.
T Consensus 492 lLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~ 565 (571)
T TIGR02203 492 ILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLH 565 (571)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHH
Confidence 58999999999999999999988877899999999998888899999999999999999999876655555544
No 54
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.4e-16 Score=91.55 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=60.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.++.+++|+|+++|++..+.. ||+++++++|+++..|++.++..+.
T Consensus 169 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~ 236 (250)
T PRK14245 169 LMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNP 236 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCC
Confidence 689999999999999999999887668899999999998865 9999999999999999988876543
No 55
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.68 E-value=8.1e-17 Score=88.75 Aligned_cols=66 Identities=29% Similarity=0.389 Sum_probs=60.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+||||+|+|||..+..|..++.+.+. +.|++||||+++.+.+ +++++++++|+|.+.|...+....
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 58999999999999999999988763 8899999999999977 999999999999999998887654
No 56
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.68 E-value=1.1e-16 Score=94.28 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=57.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus 147 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 147 FLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 5899999999999999999998875 48899999999999976 9999999999999998887754
No 57
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.68 E-value=9.4e-17 Score=102.91 Aligned_cols=70 Identities=50% Similarity=0.721 Sum_probs=60.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 72 (79)
|||||||+||+.+...+.+ ....+++|+|+|+|+++.+..+|+|+++++|++++.|++.++.+..+.+..
T Consensus 640 ILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~ 709 (711)
T TIGR00958 640 ILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709 (711)
T ss_pred EEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHh
Confidence 6899999999999888887 223468999999999998888999999999999999999998876555554
No 58
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.68 E-value=7.1e-17 Score=97.55 Aligned_cols=72 Identities=29% Similarity=0.449 Sum_probs=64.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 72 (79)
+||||||+||-..+.++..+++.+.. +.+-+||+||+..+.. |++|++|++|+|+++|+..+++.++...++
T Consensus 449 ~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred EecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHH
Confidence 58999999999999999999987743 8899999999999966 999999999999999999999888777554
No 59
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-16 Score=94.09 Aligned_cols=66 Identities=20% Similarity=0.437 Sum_probs=58.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.++. .+.|+|++||+++.+.. ||++++|++|+++..|++.++...
T Consensus 188 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 188 VFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 6899999999999999999888774 48999999999998855 999999999999999988776543
No 60
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2e-16 Score=91.09 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=60.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
||||||++||+..+..+.+.+..+..+.|+|+++|+++.+.. +|++++|++|+++..|++.++...+..
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 242 (254)
T PRK14273 173 LMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKN 242 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCC
Confidence 689999999999999999999887667899999999999865 999999999999999998887654433
No 61
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2e-16 Score=91.32 Aligned_cols=66 Identities=20% Similarity=0.367 Sum_probs=59.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+...+.|+|++||+++.+.. ||++++|++|++...+++.++...
T Consensus 177 llDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 177 LFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 589999999999999999999887668899999999999865 999999999999999988877543
No 62
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.6e-16 Score=90.60 Aligned_cols=65 Identities=32% Similarity=0.421 Sum_probs=57.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.+... ++|+|+++|+++.+.. ||++++|++|+++..|++.++..
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 68999999999999999999887643 7899999999998865 99999999999999888877654
No 63
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.68 E-value=1.8e-16 Score=90.30 Aligned_cols=65 Identities=22% Similarity=0.397 Sum_probs=57.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.+.. .++|+|++||+++.+.. ||+++++++|++...+++.++..
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 5899999999999999999998765 58899999999999866 99999999999998888776644
No 64
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.4e-16 Score=93.25 Aligned_cols=65 Identities=23% Similarity=0.428 Sum_probs=58.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+..+. .+.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 167 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 167 VLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 6899999999999999999888765 48899999999998865 99999999999999999887654
No 65
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.68 E-value=1.5e-16 Score=95.60 Aligned_cols=67 Identities=28% Similarity=0.411 Sum_probs=59.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+||||||+||+..+..+.+.+..+. . ++|+|++||+++++.. ||++++|++|+++..|++.++...+
T Consensus 152 LlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 5899999999999999999888764 3 8999999999998865 9999999999999999988876543
No 66
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3e-16 Score=90.64 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=60.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.+...++|+|+++|+++.+.. ||++++|++|+++..|++.++..+.
T Consensus 178 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 245 (259)
T PRK14274 178 LMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNP 245 (259)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence 589999999999999999999887668899999999998865 9999999999999999988876543
No 67
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.67 E-value=3.1e-16 Score=98.44 Aligned_cols=75 Identities=55% Similarity=0.722 Sum_probs=65.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.++..+.+.+....+++|+|++||+++....+|+++.+++|++.+.|++.+.......+..++.
T Consensus 499 ilDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~ 573 (576)
T TIGR02204 499 LLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLAR 573 (576)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHh
Confidence 689999999999999999988887778999999999988888999999999999999999888766555665543
No 68
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.6e-16 Score=90.47 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=59.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.+...++|+|++||+++.+.. ||++++|++|++...|+..++...+
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T PRK14239 171 LLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238 (252)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 689999999999999999999887667899999999998865 9999999999999999988876543
No 69
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.67 E-value=2e-16 Score=95.06 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=60.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC---CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~---~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||+++||+..+..+...+.+..+ +.|+|++||+++++.. +|++++|++|+++..|++.++...+.+
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~ 232 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPAD 232 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCc
Confidence 58999999999999999998887643 6899999999999865 999999999999999999988765543
No 70
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.67 E-value=2.4e-16 Score=90.48 Aligned_cols=66 Identities=18% Similarity=0.335 Sum_probs=58.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+....++.|+|+++|+++.+.. +|++++|++|++...+++.++...
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 167 LLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 589999999999999999999887656899999999998865 999999999999999988877543
No 71
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2.8e-16 Score=89.46 Aligned_cols=67 Identities=60% Similarity=0.779 Sum_probs=59.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.....+.|+|++||++..+..||+++++++|++...++..++....
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 5899999999999999999998876788999999999988669999999999999888877765543
No 72
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.67 E-value=4.8e-16 Score=88.73 Aligned_cols=71 Identities=62% Similarity=0.844 Sum_probs=61.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
+|||||++||+..+..+.+.+..+..++++|+++|+++.+..||+++++++|++...++..++........
T Consensus 162 llDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 232 (238)
T cd03249 162 LLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYA 232 (238)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHH
Confidence 58999999999999999999987767889999999999887799999999999999888777655444433
No 73
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.5e-16 Score=89.98 Aligned_cols=67 Identities=19% Similarity=0.386 Sum_probs=59.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+..+..++|+|+++|++..+.. ||++++|++|++...+++.++...+
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 239 (251)
T PRK14244 172 LMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 589999999999999999999887668999999999999865 9999999999999999888776543
No 74
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.3e-16 Score=90.83 Aligned_cols=67 Identities=15% Similarity=0.294 Sum_probs=59.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+..+..+.|+|++||++..+.. ||++++|++|+++..+++.++..+.
T Consensus 187 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 254 (268)
T PRK14248 187 LLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSP 254 (268)
T ss_pred EEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 689999999999999999999887667899999999998865 9999999999999999888776543
No 75
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.67 E-value=2.5e-16 Score=95.18 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=59.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.++.. ++|+|++||+++++.. +|++++|++|+++..|++.++...+
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 58999999999999999998877643 8999999999999865 9999999999999999988876543
No 76
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.67 E-value=2.6e-16 Score=94.34 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=60.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+|||||++||+..+..+.+.+.++.+ +.|+|++||++.++.. ||++++|++|+++..|++.++...+..
T Consensus 159 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~ 230 (353)
T PRK10851 159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPAT 230 (353)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 58999999999999999998887643 7899999999999866 999999999999999999888665443
No 77
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.4e-16 Score=93.49 Aligned_cols=65 Identities=25% Similarity=0.430 Sum_probs=57.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 199 LLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 199 IFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 6899999999999999999988764 48899999999998854 99999999999999998876543
No 78
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.67 E-value=2.3e-16 Score=92.91 Aligned_cols=65 Identities=23% Similarity=0.441 Sum_probs=58.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 5899999999999999999998774 48899999999999965 99999999999999998877643
No 79
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3e-16 Score=90.25 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=59.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.....+.|+|++||+++.+.. ||+++++++|+++..+++.++..++
T Consensus 170 llDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14270 170 LMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEP 237 (251)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCC
Confidence 589999999999999999999887667899999999998865 9999999999999999988876543
No 80
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.66 E-value=7.6e-16 Score=88.91 Aligned_cols=67 Identities=36% Similarity=0.553 Sum_probs=59.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+.....+.+.+.....+.|+|+++|++..+..||++++|++|+++..|++.++....
T Consensus 179 llDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 245 (257)
T cd03288 179 IMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE 245 (257)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 5899999999999999999888776689999999999988779999999999999999888776543
No 81
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.6e-16 Score=89.94 Aligned_cols=66 Identities=15% Similarity=0.369 Sum_probs=59.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+...+.|+|++||+++.+.. ||++++|++|++...|++.++...
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 172 LMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 589999999999999999999887667899999999999865 999999999999998888777543
No 82
>KOG0054|consensus
Probab=99.66 E-value=2.6e-16 Score=105.17 Aligned_cols=74 Identities=35% Similarity=0.576 Sum_probs=68.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHH-HHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYW-TLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~-~~~ 74 (79)
||||+|+++|+.+...+++.+++..+++|+|.|.|++..+..+|+|++|++|++++.++|.++++++...+ ..+
T Consensus 1298 vLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l 1372 (1381)
T KOG0054|consen 1298 VLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLL 1372 (1381)
T ss_pred EEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999998766644 343
No 83
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.66 E-value=3.2e-16 Score=92.24 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=59.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++..+.|+|++||+++++.. ||+++++++|++...|+..++..
T Consensus 156 iLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 156 ILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 589999999999999999999888668999999999999876 99999999999999998887643
No 84
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=6.7e-17 Score=92.32 Aligned_cols=65 Identities=25% Similarity=0.369 Sum_probs=59.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
|||||+|+|||.+...+.+.+.+.+ +|.|+|+.+|.|+.+.. ||+++.++.|+.+.+|+...+.+
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 6999999999999999999888775 49999999999999976 99999999999999999877654
No 85
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.9e-16 Score=94.23 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=60.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||||+||+..+..+...+..+.. +.|+|++||++.++.. +|++++|++|++...|++.++...+..
T Consensus 157 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 58999999999999999888887643 8899999999998865 999999999999999999888765543
No 86
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.7e-16 Score=92.03 Aligned_cols=65 Identities=18% Similarity=0.362 Sum_probs=57.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+++.++.. +.|+|++||+++.+.. ||++++|++|++...|++.++..
T Consensus 167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 167 ILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 68999999999999999999987743 7899999999998865 99999999999999998877643
No 87
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3.6e-16 Score=93.72 Aligned_cols=69 Identities=20% Similarity=0.343 Sum_probs=61.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||+|+||+..+..+...+..+.+ +.|+|++||++.++.. +|++++|++|++...|++.++...+..
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 58999999999999999998887743 8999999999999865 999999999999999999888765544
No 88
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.66 E-value=1.8e-16 Score=89.95 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=54.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHK 61 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~ 61 (79)
+|||||++||+..+..+.+.+.+.....|+|++||+++.+.. ||+++++++|+++..|++.
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 589999999999999999999887545899999999998865 9999999999998887654
No 89
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.2e-16 Score=89.53 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=59.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+...+.|+|+++|+++.+.. ||++++|++|++...|++.++...
T Consensus 169 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 169 LADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 689999999999999999999887668999999999998865 999999999999999998877654
No 90
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.66 E-value=3.6e-16 Score=89.44 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=58.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+..+..+.|+|++||+++.+.. ||+++++++|+++..++..++..
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 166 LLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 589999999999999999999887667899999999999865 99999999999999888877654
No 91
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.3e-16 Score=89.17 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=59.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.+...+.|+|++||+++.+.. +|++++|++|++...++..++...+
T Consensus 170 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14251 170 LLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAP 237 (251)
T ss_pred EecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCC
Confidence 689999999999999999999887667899999999999865 9999999999999999888775443
No 92
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.66 E-value=3.8e-16 Score=93.68 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=60.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||+|+||+..+..+...+.+..+ +.|+|++||++.++.. +|++++|++|+++..|++.++...+..
T Consensus 157 LLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 157 LLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 58999999999999999998887643 8899999999999865 999999999999999999888765543
No 93
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.8e-16 Score=89.44 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=59.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.++..+.|+|+++|+++.+.. ||++++|++|++...++..++....
T Consensus 171 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14256 171 LMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTP 238 (252)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 689999999999999999999888667899999999999865 9999999999999999988876543
No 94
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=4.1e-16 Score=89.00 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=58.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||+++++++|+++..|++.++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 5899999999999999999988765 48999999999998855 99999999999999998887754
No 95
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.9e-16 Score=91.75 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=58.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
||||||++||+..+..+.+.+.++.. +.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 68999999999999999998887753 8899999999999865 99999999999999998877654
No 96
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3.4e-16 Score=91.74 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=57.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++. . +.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 168 llDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 168 VLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 6899999999999999999988774 3 8899999999999865 99999999999999998777543
No 97
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.4e-16 Score=89.46 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=57.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++.. ++|+|+++|+++.+.. ||++++|++|++...+++.++..
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 68999999999999999999987743 7899999999998865 99999999999999998877654
No 98
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.7e-16 Score=94.18 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=59.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG 68 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 68 (79)
+|||||++||+..+..+.+.+.++. + +.|+|++||+++++.. ||++++|++|++...|++.++...+.
T Consensus 156 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 5899999999999999998888764 3 8899999999998865 99999999999999999888765443
No 99
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.3e-16 Score=89.34 Aligned_cols=66 Identities=21% Similarity=0.383 Sum_probs=58.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+...+.|+|++||++..+.. +|+++++++|+++..++..++...
T Consensus 179 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 179 LLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245 (260)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 689999999999999999999887667899999999998865 999999999999999988777543
No 100
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.2e-16 Score=89.29 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=59.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.....++|+|+++|+++.+.. ||++++|++|++...|++.++...
T Consensus 172 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 172 LMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 689999999999999999999887667899999999999865 999999999999999988877543
No 101
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.1e-15 Score=87.18 Aligned_cols=71 Identities=54% Similarity=0.750 Sum_probs=60.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
+|||||++||+.....+.+.+.....+.|+|+++|+++.+..||+++++++|++...++..++........
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~ 230 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYA 230 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHH
Confidence 68999999999999999999887756889999999999886699999999999998888777655433333
No 102
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.4e-16 Score=88.88 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=59.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.+...+.|+|++||+++.+.. ||++++|++|+++..+++.+...++
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14255 171 LLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP 238 (252)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 689999999999999999999887657899999999999865 9999999999999998887776543
No 103
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.65 E-value=5.1e-16 Score=92.24 Aligned_cols=67 Identities=21% Similarity=0.368 Sum_probs=59.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.+.. + +.|+|++||++.++.. ||++++|++|++...|++.++...+
T Consensus 123 lLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 123 LLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 6899999999999999999888764 3 7899999999998865 9999999999999999988876543
No 104
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4.4e-16 Score=91.17 Aligned_cols=65 Identities=23% Similarity=0.425 Sum_probs=57.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++. .+.|+|++||+++.+.. ||+++++++|+++..|++.++..
T Consensus 168 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 168 CLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 6899999999999999999998775 48899999999999865 99999999999999888776543
No 105
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.65 E-value=4.8e-16 Score=87.83 Aligned_cols=62 Identities=19% Similarity=0.394 Sum_probs=55.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS 62 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~ 62 (79)
+|||||++||+.....+.+.+.+...+.|+|+++|+++.+.. ||+++++++|+++..+++.+
T Consensus 156 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 156 LLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 589999999999999999999887667899999999999865 99999999999998877654
No 106
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.8e-16 Score=88.63 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=58.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+.....+.+.+.+..++.|+|++||+++.+.. ||+++++++|++...|+..++..
T Consensus 168 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 168 LMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 589999999999999999999888667899999999999866 99999999999999888777654
No 107
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.4e-16 Score=88.30 Aligned_cols=66 Identities=23% Similarity=0.366 Sum_probs=58.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+...+.|+|++||+++.+.. +|+++++++|+++..++..++...
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 169 LMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 589999999999999999999887668899999999998866 999999999999999988776543
No 108
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.65 E-value=5.2e-16 Score=94.31 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=58.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+++.++. .+.|+|+++|+++.+.. ||++++|++|+++..|++.++..
T Consensus 162 LLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 5899999999999999999988875 48899999999999965 99999999999999999887654
No 109
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=3.9e-16 Score=89.16 Aligned_cols=63 Identities=30% Similarity=0.329 Sum_probs=56.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+.... .++|+|++||+++.+.. ||++++|++|+++..+++.++
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 6899999999999999999988764 38899999999999975 999999999999998887765
No 110
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.2e-16 Score=89.63 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=60.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+.....+.+.+..+.++.|+|+++|+++.+.. ||++++|++|++...|++.++...+
T Consensus 190 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 257 (271)
T PRK14238 190 LMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257 (271)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 689999999999999999999887667899999999999865 9999999999999999988876543
No 111
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.65 E-value=4.6e-16 Score=98.68 Aligned_cols=69 Identities=26% Similarity=0.359 Sum_probs=60.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
||||||++||+..+..+.+++..+. . +.|+|++||+++.+.. ||++++|++|++++.|+..++..++.+
T Consensus 486 llDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~ 557 (623)
T PRK10261 486 IADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQH 557 (623)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCC
Confidence 6899999999999999999998764 3 7899999999999966 999999999999999998887654433
No 112
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.8e-16 Score=88.33 Aligned_cols=66 Identities=21% Similarity=0.413 Sum_probs=59.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+.....+.+.+.+...+.|+|++||+++.+.. +|+++++++|+++..|+..++...
T Consensus 165 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 165 LLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 589999999999999999999877668999999999998865 999999999999999988877543
No 113
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=5.7e-16 Score=88.56 Aligned_cols=66 Identities=24% Similarity=0.436 Sum_probs=58.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+..+. .++|+|++||+++.+.. ||+++++++|+++..|+..++...
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 5899999999999999999988775 48999999999999865 999999999999999988776543
No 114
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.7e-16 Score=88.31 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=59.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+.....+.+.+.++..+.|+|++||++..+.. ||++++|++|++...+++.++...+
T Consensus 170 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14249 170 LMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237 (251)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCC
Confidence 689999999999999999999877668899999999999876 8999999999999999888775543
No 115
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=5.1e-16 Score=88.41 Aligned_cols=65 Identities=29% Similarity=0.489 Sum_probs=57.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+..+. . +.|+|+++|+++.+.. +|++++|++|+++..++..++..
T Consensus 163 lLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 163 LCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 6899999999999999999998764 3 7899999999998865 99999999999999887766543
No 116
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.65 E-value=6.6e-16 Score=87.89 Aligned_cols=66 Identities=29% Similarity=0.395 Sum_probs=58.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+... +.|+|+++|+++.+.. +|++++|++|++...+++.++...
T Consensus 148 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 148 IADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 68999999999999999998887643 7899999999999865 999999999999999988887643
No 117
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=5.9e-16 Score=89.93 Aligned_cols=65 Identities=22% Similarity=0.384 Sum_probs=57.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|+++|++..+.. ||++++|++|+++..|++.++..
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 6899999999999999999988764 47899999999999865 99999999999999888776543
No 118
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.65 E-value=7.2e-16 Score=88.95 Aligned_cols=66 Identities=24% Similarity=0.420 Sum_probs=58.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+.....+.+.+.++.. +.|+|++||++..+.. ||+++++++|+++..|++.++...
T Consensus 175 llDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 242 (257)
T PRK10619 175 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242 (257)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhC
Confidence 68999999999999999999887754 8999999999999876 999999999999999888776543
No 119
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.65 E-value=4.9e-16 Score=87.84 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=55.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|+++|+++.+.. ||+++++++|++...++..++
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 5899999999999999999998775 47899999999998865 999999999999988876654
No 120
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.3e-16 Score=92.41 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=58.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.++. . +.|+|++||+++.+.. ||++++|++|+++..|+..++...
T Consensus 163 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 163 LCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 5899999999999999999998774 3 7899999999999866 999999999999999988776543
No 121
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.1e-16 Score=93.07 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=60.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+|||||++||+..+..+.+.+.++.+ +.|+|++||+++++.. ||++++|++|++...|++.++...+..
T Consensus 151 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 58999999999999999998887643 7899999999998865 999999999999999999888765543
No 122
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.7e-16 Score=88.75 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=59.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.++..+.|+|+++|+++.+.. ||++++|++|+++..|++.++...
T Consensus 171 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 171 LMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 689999999999999999999887667999999999999875 999999999999999988877554
No 123
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.64 E-value=7.3e-16 Score=88.51 Aligned_cols=66 Identities=32% Similarity=0.465 Sum_probs=58.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.++.. +.|+|++||++..+.. ||++++|++|+++..++..++...
T Consensus 167 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 167 LFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 68999999999999999999887754 8899999999999865 999999999999999888776543
No 124
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.64 E-value=5.4e-16 Score=88.22 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=57.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.+... +.|+|+++|+++.+.. ||+++++++|++...++..++..
T Consensus 156 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 156 LLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 68999999999999999999887654 8899999999988865 99999999999998888776643
No 125
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.64 E-value=6.6e-16 Score=93.23 Aligned_cols=69 Identities=25% Similarity=0.357 Sum_probs=60.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||+|+||+..+..+...+..... +.|+|++||++.++.. +|++++|++|++...|++.++...+..
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 58999999999999999998887643 8999999999998865 999999999999999999888765544
No 126
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=8.9e-16 Score=87.18 Aligned_cols=65 Identities=54% Similarity=0.784 Sum_probs=57.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+..+..+.|+|++||++..+..||++++|++|++...++..++..
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 58999999999999999999988766899999999999886699999999999998877666543
No 127
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=5.9e-16 Score=90.59 Aligned_cols=65 Identities=26% Similarity=0.449 Sum_probs=57.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+...+.++. .+.|+|++||+++.+.. +|++++|++|+++..|++.++..
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 168 VLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 6899999999999999999998874 38999999999998865 99999999999999998877554
No 128
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=7.9e-16 Score=89.39 Aligned_cols=66 Identities=24% Similarity=0.386 Sum_probs=58.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.++. . +.|+|++||+++.+.. ||++++|++|++...|++.++...
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 6899999999999999999988764 3 7899999999998865 999999999999999988877543
No 129
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=6.9e-16 Score=88.63 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=57.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+||||++++|+..+..+..++.+++. |+||++|+||+..+.. +|+|+.+ ++++...|++.++.+.
T Consensus 162 lLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~ 228 (254)
T COG1121 162 LLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE 228 (254)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH
Confidence 69999999999999999999998865 9999999999999966 9999999 5778888998887653
No 130
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=7.9e-16 Score=89.28 Aligned_cols=66 Identities=17% Similarity=0.348 Sum_probs=59.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+...+.|+|+++|+++.+.. ||+++++++|++...++..++...
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 186 LMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 689999999999999999999887667899999999999865 999999999999999988777543
No 131
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=6.9e-16 Score=89.95 Aligned_cols=65 Identities=28% Similarity=0.391 Sum_probs=57.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
||||||++||+..+..+.+.+.++.. +.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 68999999999999999999887643 7899999999999865 99999999999999998877643
No 132
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.64 E-value=8.7e-16 Score=89.00 Aligned_cols=65 Identities=29% Similarity=0.365 Sum_probs=58.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++.+ +.|+|+++|+++.+.. +|+++++++|+++..|+..++..
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 173 VLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 58999999999999999999987643 7899999999999965 99999999999999999888765
No 133
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=9.8e-16 Score=89.42 Aligned_cols=65 Identities=25% Similarity=0.427 Sum_probs=58.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
||||||++||+..+..+.+.+.++. .+.|+|++||+++.+..||+++++++|++...|++.++..
T Consensus 167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 6899999999999999999998874 3889999999999886699999999999999998877654
No 134
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=87.73 Aligned_cols=66 Identities=21% Similarity=0.421 Sum_probs=59.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+..+++|+|++||+++.+.. +|+++++++|++...|++.++...
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 169 LLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred EEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 589999999999999999999887667899999999998755 999999999999999988877643
No 135
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=8.4e-16 Score=89.69 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=57.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++.. +.|+|++||+++.+..||+++++++|++...|++.++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 163 ILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 68999999999999999999887753 899999999999886699999999999999888777654
No 136
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.64 E-value=6.2e-16 Score=88.45 Aligned_cols=63 Identities=32% Similarity=0.343 Sum_probs=56.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+.+.. + ++|+|++||+++.+.. ||++++|++|+++..|++.++
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 6899999999999999999988764 3 7899999999999865 999999999999988887765
No 137
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.3e-15 Score=88.40 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=59.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+.....+.+.+.....+.++|++||+++.+.. ||++++|++|+++..|++.++...
T Consensus 186 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 186 LMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 589999999999999999999887667899999999998855 999999999999999998887543
No 138
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=9.9e-16 Score=89.21 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=58.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+...+.++.. +.|+|+++|+++.+.. ||++++|++|+++..|++.++..
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 68999999999999999999987754 8999999999999865 99999999999999998877654
No 139
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.1e-15 Score=88.86 Aligned_cols=66 Identities=20% Similarity=0.344 Sum_probs=59.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+..++.|+|++||+++.+.. ||++++|++|++...|++.++...
T Consensus 191 lLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 191 LLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence 689999999999999999999887667899999999999865 999999999999999988776543
No 140
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1e-15 Score=89.64 Aligned_cols=66 Identities=17% Similarity=0.319 Sum_probs=59.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
||||||++||+.....+.+.+.++..+.|+|+++|+++.+.. ||++++|++|++...|+..++...
T Consensus 205 lLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 205 LLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 689999999999999999999887667899999999999865 999999999999999988777554
No 141
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=9.7e-16 Score=89.23 Aligned_cols=65 Identities=32% Similarity=0.528 Sum_probs=57.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++. .+.|+|++||+++.+..||+++++++|+++..|+..++..
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 5899999999999999999998765 4899999999999886699999999999999888776543
No 142
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.3e-15 Score=88.25 Aligned_cols=67 Identities=16% Similarity=0.295 Sum_probs=59.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe---------CceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ---------AGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~---------~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+..+..+.|+|+++|+++.+.. ||++++|+ +|++++.|+..++...+
T Consensus 174 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~~ 250 (264)
T PRK14243 174 LMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSP 250 (264)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhCC
Confidence 689999999999999999999887667899999999999866 99999998 79999999988886544
No 143
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.63 E-value=7.8e-16 Score=87.49 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=56.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+.++.+ +.|+|++||+++.+.. ||+++++++|+++..++..++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 58999999999999999999987753 7899999999999975 999999999999998887765
No 144
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.63 E-value=1.1e-15 Score=88.17 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=58.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+.....+.+.+..... +.|+|++||+++.+.. ||+++++++|+++..|++.++..++
T Consensus 174 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 243 (258)
T PRK11701 174 FMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDP 243 (258)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 58999999999999999998887643 7899999999999975 9999999999999999888775443
No 145
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.6e-15 Score=88.04 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=57.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+..+ +.|+|++||+++.+..+|+++++++|++...|++.++...
T Consensus 165 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 165 ILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 68999999999999999999887643 7899999999998866999999999999998888776443
No 146
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=8.4e-16 Score=89.48 Aligned_cols=62 Identities=21% Similarity=0.397 Sum_probs=55.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS 62 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~ 62 (79)
+|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..|++..
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 5899999999999999999998774 38899999999999855 99999999999999888654
No 147
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=9.9e-16 Score=89.70 Aligned_cols=64 Identities=19% Similarity=0.385 Sum_probs=56.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+..+..+.+.+.++. .++|+|++||+++.+.. ||+++++++|+++..|++.++.
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 6899999999999999999888764 37899999999998865 9999999999999888876654
No 148
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=87.43 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=59.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.....+.|+|+++|++..+.. +|++++|++|++...|+..++...+
T Consensus 172 lLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 239 (253)
T PRK14261 172 LMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP 239 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCC
Confidence 589999999999999999999887667899999999999865 9999999999999999888775443
No 149
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.2e-15 Score=87.35 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=58.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||+++++++|+++..+++.++...+
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 154 LLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 6899999999999999999888764 37899999999999865 9999999999999999888776543
No 150
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.2e-15 Score=92.75 Aligned_cols=67 Identities=27% Similarity=0.383 Sum_probs=58.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.+.. .++|+|++||+++++.. +|++++|++|+++..|++.++...+
T Consensus 187 LLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 187 LMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 6899999999999999999888764 38899999999998865 9999999999999989888776543
No 151
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.4e-15 Score=86.57 Aligned_cols=67 Identities=27% Similarity=0.333 Sum_probs=58.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+..+. . +.|+|+++|+++.+.. ||+++++.+|++...|++.++....
T Consensus 152 lLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 6899999999999999999988764 3 7899999999999865 9999999999999999887776543
No 152
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.1e-15 Score=92.33 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=59.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||+|+||+..+..+...+.+.. .+.|+|++||++.++.. +|++++|++|++...|++.++...+..
T Consensus 172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~ 243 (377)
T PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTT 243 (377)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCcc
Confidence 5899999999999998887776653 38899999999998865 999999999999999999888765554
No 153
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.63 E-value=1.5e-15 Score=88.18 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=58.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.++.+ +.|+|++||++..+.. ||++++|++|+++..|++.++...
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 166 MFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 68999999999999999999887643 7899999999998866 999999999999999888776543
No 154
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.63 E-value=1.4e-15 Score=87.54 Aligned_cols=66 Identities=26% Similarity=0.413 Sum_probs=58.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+..+ +.|+|++||++..+.. +|++++|++|++++.|+..++...
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 169 LFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 58999999999999999998887643 7899999999999865 999999999999999988777543
No 155
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.2e-15 Score=88.92 Aligned_cols=65 Identities=25% Similarity=0.449 Sum_probs=57.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+..+.+ +.|+|++||+++.+.. ||+++++++|++...|++.++..
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 168 VLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 68999999999999999999887654 7899999999998865 99999999999998888766543
No 156
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=9.2e-16 Score=87.26 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=64.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 72 (79)
+||||.++|.+.....+...+..... +.|+++|.|+++.+.. ||++++|+.|+++..|+|.++.+++.....
T Consensus 172 LLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~VieA 246 (250)
T COG0411 172 LLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPRVIEA 246 (250)
T ss_pred EecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCHHhHHH
Confidence 58999999999999999999988864 6999999999999976 999999999999999999999887765543
No 157
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=8.9e-16 Score=86.32 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=52.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~ 58 (79)
+|||||++||+..+..+.+.+.....+.|+|+++|+++.+.. +|+++++++|++...|
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 153 IVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 589999999999999999999887667999999999999865 9999999999987643
No 158
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.63 E-value=1.1e-15 Score=91.75 Aligned_cols=68 Identities=26% Similarity=0.353 Sum_probs=59.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG 68 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 68 (79)
+|||||++||+..+..+.+.+.++.. +.|+|++||+++.+.. +|++++|++|++...|++.++...+.
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 58999999999999999999887643 7899999999998865 99999999999999998887765443
No 159
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.63 E-value=1.8e-15 Score=86.37 Aligned_cols=65 Identities=25% Similarity=0.411 Sum_probs=57.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+..+. .+.|+|+++|+++.+..||++++|++|++...+++..+..
T Consensus 155 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 155 LLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 5899999999999999999988775 3789999999999886699999999999999888776654
No 160
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.4e-15 Score=88.79 Aligned_cols=65 Identities=28% Similarity=0.429 Sum_probs=57.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++.. +.|+|++||+++.+..||+++++.+|++++.|+..++..
T Consensus 163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 68999999999999999999987753 789999999999886799999999999999888766543
No 161
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.63 E-value=1.6e-15 Score=88.02 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=61.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+|||||++||+.....+.+.+..+. .+.|+|+++|++..+.. |++++++++|++...|+..++......+...+
T Consensus 166 lLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 241 (264)
T PRK13546 166 VIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDF 241 (264)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHH
Confidence 5899999999999988888887764 48899999999999865 99999999999999998887765444444443
No 162
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=6.9e-16 Score=86.87 Aligned_cols=58 Identities=28% Similarity=0.370 Sum_probs=51.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~ 58 (79)
+|||||++||+..+..+.+.+.++. .+.|+|+++|+++.+.. ||+++++++|++...|
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 153 LLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 6899999999999999999998764 37899999999998865 9999999999987643
No 163
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.4e-15 Score=87.57 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=57.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.+.. + +.|+|++||+++.+.. ||+++++++|+++..++..++..
T Consensus 176 llDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 6899999999999999999988764 3 7899999999999865 99999999999999888777654
No 164
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=88.13 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=59.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe---------CceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ---------AGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~---------~G~i~~~~~~~~~~~~~ 67 (79)
||||||++||+..+..+.+.+.++.++.|+|+++|+++.+.. ||++++|+ +|+++..|+..++...+
T Consensus 184 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~~ 260 (274)
T PRK14265 184 LMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSP 260 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhCC
Confidence 689999999999999999999887667899999999999965 99999997 79999999998876543
No 165
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.63 E-value=1.2e-15 Score=87.73 Aligned_cols=65 Identities=23% Similarity=0.418 Sum_probs=57.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.... .+.|+|+++|+++.+.. ||++++|++|+++..|+..++..
T Consensus 156 llDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 156 LLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 5899999999999999999988775 47899999999998855 99999999999999888776543
No 166
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.63 E-value=1.3e-15 Score=88.39 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=58.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.++. .+.|+|+++|+++.+.. ||+++++++|++...+++.++...
T Consensus 172 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 172 IADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240 (267)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence 6899999999999999999888764 37899999999999976 999999999999998888877654
No 167
>KOG0056|consensus
Probab=99.62 E-value=7.6e-16 Score=95.26 Aligned_cols=75 Identities=45% Similarity=0.723 Sum_probs=69.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc-cchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK-KGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 75 (79)
+|||+||+||..+++.++..+...+.++|.|+|.|+++.+-.+|.++++++|+|++.|+..++... .+.+...++
T Consensus 697 lLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq 772 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQ 772 (790)
T ss_pred EEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999998764 666777774
No 168
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.62 E-value=1.1e-15 Score=95.35 Aligned_cols=66 Identities=29% Similarity=0.428 Sum_probs=58.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
||||||++||+..+..+.+.+.++. + +.|+|++||++..+.. ||++++|++|+++..|+..++...
T Consensus 448 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 448 ILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516 (529)
T ss_pred EeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence 6899999999999999999998774 3 7899999999999865 999999999999999988877654
No 169
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.8e-15 Score=88.20 Aligned_cols=65 Identities=26% Similarity=0.368 Sum_probs=57.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+...+.++.+ +.|+|++||+++.+..+|++++|++|+++..|++.++..
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 68999999999999999999887753 889999999999986799999999999999888877654
No 170
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.62 E-value=1.4e-15 Score=86.92 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=55.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc--CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|++...|++...
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 167 ILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 6899999999999999999998875 47899999999999864 799999999999988887644
No 171
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.62 E-value=1.7e-15 Score=102.63 Aligned_cols=76 Identities=32% Similarity=0.561 Sum_probs=66.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeC----ceEe-eecChhHHhh-ccchHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQA----GQIV-EMGNHKSLLA-KKGHYWT 72 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~----G~i~-~~~~~~~~~~-~~~~~~~ 72 (79)
|||||||+||+.+...+.+.+.... +++|+|+|+|+++.+..+|+|++|++ |+++ +.|++.++.. ..+.++.
T Consensus 1381 LLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~ 1460 (1466)
T PTZ00265 1381 LLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKK 1460 (1466)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHH
Confidence 6999999999999999999998874 58999999999999988999999999 8855 7999999987 4677777
Q ss_pred HHhc
Q psy10474 73 LMNQ 76 (79)
Q Consensus 73 ~~~~ 76 (79)
+++.
T Consensus 1461 l~~~ 1464 (1466)
T PTZ00265 1461 YVKL 1464 (1466)
T ss_pred HHhh
Confidence 7654
No 172
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=1.5e-15 Score=86.94 Aligned_cols=65 Identities=23% Similarity=0.426 Sum_probs=57.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.... . +.|+|++||++..+.. +|+++++++|+++..++...+..
T Consensus 158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 5899999999999999999888774 3 7899999999998865 99999999999999888776644
No 173
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.3e-15 Score=87.46 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=58.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeC-----------ceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA-----------GQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~-----------G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.....+.|+|++||++..+.. ||++++|++ |++++.|++.++...+
T Consensus 177 lLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 177 LMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSP 255 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhCc
Confidence 689999999999999999999887667899999999998865 999999996 6688889888876543
No 174
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.62 E-value=1.7e-15 Score=94.76 Aligned_cols=65 Identities=35% Similarity=0.513 Sum_probs=58.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+||||||+||+.++..+.+.+.... .++|+|+++|+++.+..+|+++++++|++++.|++.++..
T Consensus 477 ilDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 6899999999999999999888775 5899999999999777799999999999999998877643
No 175
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=1.4e-15 Score=85.99 Aligned_cols=62 Identities=19% Similarity=0.352 Sum_probs=54.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS 62 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~ 62 (79)
+|||||++||+.....+.+.+.+.. + +.|+|++||+++.+.. ||+++++++|+++..+++.+
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 154 FLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 5899999999999999999888764 3 7899999999999865 99999999999988776543
No 176
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.6e-15 Score=86.79 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=58.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe-----CceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ-----AGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~-----~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.....+.|+|++||+++.+.. ||++++|+ +|+++..|++.++...
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 173 LMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN 244 (259)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcC
Confidence 589999999999999999999887667899999999999966 99999997 5999999998887543
No 177
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.6e-15 Score=86.73 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=57.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.... .+.|+|+++|+++.+.. ||++++|++|+++..+++.++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 5899999999999999988887765 48899999999988865 99999999999999888877654
No 178
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.7e-15 Score=87.46 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=58.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
||||||++||+..+..+.+.+.++..+.|+|+++|++..+.. +|++++|++|++...++..++...
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 186 LLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 689999999999999999988877656899999999998865 999999999999999988877654
No 179
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.1e-15 Score=86.00 Aligned_cols=66 Identities=26% Similarity=0.379 Sum_probs=59.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
.||||||+||...+..+..+.++.+ ++..++.|-||++.... ||+++.|.+|+++..|.+.+.++.
T Consensus 164 ~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred EecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 4899999999999999999888875 48999999999999966 999999999999999999887753
No 180
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.8e-15 Score=86.66 Aligned_cols=68 Identities=16% Similarity=0.312 Sum_probs=60.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG 68 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 68 (79)
+|||||++||+..+..+.+.+.++..+.|+|+++|++..+.. |++++++++|++...|+..++...+.
T Consensus 176 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~~ 244 (257)
T PRK14246 176 LMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPK 244 (257)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 589999999999999999999887667999999999999855 99999999999999998887765433
No 181
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.61 E-value=1.6e-15 Score=87.59 Aligned_cols=65 Identities=28% Similarity=0.388 Sum_probs=57.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++. .+.|+|++||++..+.. ||++++|.+|+++..+++.++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5899999999999999999888765 37899999999999865 99999999999998888766543
No 182
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.61 E-value=1.8e-15 Score=83.25 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=51.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 57 (79)
+|||||++||+..+..+.+.+.+..++.|+|+++|+++.+..+|+++++++|++.+.
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQ 177 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 589999999999999999999887668899999999998877999999999998764
No 183
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=2.9e-15 Score=85.77 Aligned_cols=64 Identities=23% Similarity=0.416 Sum_probs=57.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+.....+.+.+.+... +.|+|+++|++..+.. +|++++|.+|++...+++.++.
T Consensus 164 ilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 164 LFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 68999999999999999999987754 8999999999999865 9999999999999988877654
No 184
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.61 E-value=1.8e-15 Score=87.31 Aligned_cols=64 Identities=25% Similarity=0.356 Sum_probs=57.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+.....+.+.+.+..+ +.|+|+++|+++.+.. ||++++|++|+++..|+..++.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 160 LLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 68999999999999999999887754 7899999999999965 9999999999999988877654
No 185
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.4e-15 Score=87.12 Aligned_cols=65 Identities=18% Similarity=0.371 Sum_probs=58.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+.....+.+.+.+...+.|+|++||+++.+.. ||+++++++|++...|+..++..
T Consensus 184 llDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 249 (265)
T PRK14252 184 LFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI 249 (265)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 589999999999999999998887667899999999999965 99999999999999998877754
No 186
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.61 E-value=1.2e-15 Score=86.50 Aligned_cols=57 Identities=35% Similarity=0.412 Sum_probs=51.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~ 57 (79)
+|||||++||+..+..+.+.+.+..+ +.|+|++||+++.+.. ||+++++++|++...
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 168 IADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence 68999999999999999999987753 7899999999999875 999999999998754
No 187
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.61 E-value=1.5e-15 Score=85.28 Aligned_cols=58 Identities=31% Similarity=0.434 Sum_probs=51.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~ 58 (79)
+|||||++||+..+..+...+.+.. .+.|+|++||++..+.. +|++++|++|+++..|
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 149 ILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 5899999999999999999888765 48899999999998865 9999999999987643
No 188
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.61 E-value=2.7e-15 Score=86.31 Aligned_cols=66 Identities=23% Similarity=0.360 Sum_probs=58.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+.. . +.|+|+++|+++.+.. +|++++|++|+++..++..++...
T Consensus 171 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~ 239 (253)
T TIGR02323 171 FMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239 (253)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcC
Confidence 5899999999999999999888764 3 7899999999999875 999999999999999888776543
No 189
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.3e-15 Score=89.22 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=61.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY 70 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 70 (79)
+||||.++||+..+..+...+.... .+.|+++||||.+++.. +|+|++|++|+|...|++.++...+...
T Consensus 160 LLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 160 LLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred eecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 5899999999999999988887764 38999999999999965 9999999999999999999987655553
No 190
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.61 E-value=2.4e-15 Score=86.68 Aligned_cols=66 Identities=27% Similarity=0.390 Sum_probs=58.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+..+. . +.|+|+++|+++.+.. ||+++++++|++...++..++...
T Consensus 163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 6899999999999999999888764 3 7899999999999865 999999999999999988877543
No 191
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.8e-15 Score=86.80 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=59.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe--------CceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ--------AGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~--------~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.++.++.|+|+++|+++.+.. ||++++|+ +|++++.|+..++...+
T Consensus 172 llDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~~~ 247 (261)
T PRK14263 172 LLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHhCC
Confidence 589999999999999999999887667899999999998865 99999996 89999999988876543
No 192
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.8e-15 Score=86.57 Aligned_cols=66 Identities=17% Similarity=0.341 Sum_probs=58.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe------CceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ------AGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~------~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+...++|+|+++|++..+.. ||+++++. +|++++.+++.++...
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~~ 243 (258)
T PRK14241 171 LMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSN 243 (258)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHhC
Confidence 589999999999999999999887667899999999999865 99999996 7999999988877543
No 193
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.61 E-value=2e-15 Score=87.35 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=56.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+.....+.+.+.... .+.|+|++||+++.+.. ||+++++.+|++...|++.++
T Consensus 175 llDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 175 LADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 6899999999999999999998875 37899999999998755 999999999999999988775
No 194
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=2.1e-15 Score=86.93 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=56.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+..+..+.+.+..+. .+.|+|++||+++.+.. ||+++++++|++...+++.++.
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 161 LLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 6899999999999999999988764 48899999999999865 9999999999999888877654
No 195
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=2.9e-15 Score=87.57 Aligned_cols=65 Identities=22% Similarity=0.355 Sum_probs=57.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
||||||++||+..+..+.+.+.+... +.|+|++||+++.+..||++++|++|++++.|++.++..
T Consensus 166 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 166 ILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 68999999999999999999987643 789999999999886699999999999999998776543
No 196
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.61 E-value=2.5e-15 Score=87.23 Aligned_cols=65 Identities=28% Similarity=0.301 Sum_probs=57.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.+... +.|+|++||++..+.. ||+++++++|++...|++.++..
T Consensus 174 lLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 174 ILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 68999999999999999999887643 7899999999999975 99999999999999998877654
No 197
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.4e-15 Score=96.52 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=58.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
||||||++||+..+..+.+++..+. + +.|+|++||++..+.. ||++++|++|+++..|++.++..
T Consensus 191 llDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 191 IADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258 (623)
T ss_pred EEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc
Confidence 6899999999999999999998874 3 8899999999999865 99999999999998888777654
No 198
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=3.5e-15 Score=85.75 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=59.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+.....+.+.+.+...+.|+|+++|++..+.. +++++++++|++...|++.++...
T Consensus 169 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 589999999999999999999887668899999999999876 999999999999999998887544
No 199
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.60 E-value=2.8e-15 Score=84.15 Aligned_cols=59 Identities=29% Similarity=0.498 Sum_probs=53.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~ 59 (79)
+|||||++||+.....+.+.+.....+.|+|++||++..+..+|++++|++|++...|+
T Consensus 148 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 148 VLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 58999999999999999999988766899999999999886699999999999987664
No 200
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.60 E-value=2.7e-15 Score=92.97 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=56.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+.....+.+.+..+.+ +.|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 58999999999999999999987754 7899999999999866 9999999999999888876654
No 201
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=2.3e-15 Score=87.21 Aligned_cols=65 Identities=25% Similarity=0.380 Sum_probs=57.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++. . +.|+|++||+++.+.. ||++++|++|+++..++..++..
T Consensus 170 lLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 170 LLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 6899999999999999999998774 3 7899999999999865 99999999999998888776543
No 202
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.3e-15 Score=94.72 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=55.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+++..+. .+.|+|++||+++++.. ||++++|++|+++..++..++
T Consensus 428 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 428 ILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 6899999999999999999988764 48899999999999866 999999999999888776554
No 203
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.60 E-value=2.7e-15 Score=93.71 Aligned_cols=65 Identities=28% Similarity=0.337 Sum_probs=57.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+.....+.+++.+.. .+.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 179 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 246 (529)
T PRK15134 179 IADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246 (529)
T ss_pred EEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhh
Confidence 5899999999999999999998764 37899999999999865 99999999999999888877644
No 204
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.60 E-value=1.9e-15 Score=86.00 Aligned_cols=58 Identities=24% Similarity=0.377 Sum_probs=51.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~ 58 (79)
+|||||++||+.....+.+.+.... .+.|+|++||+++.+..||++++| ++|+++++|
T Consensus 162 llDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 162 VLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 6899999999999999998887764 488999999999987669999999 889988765
No 205
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.8e-15 Score=86.87 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=56.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+..+..+.+.+.++.+ +.|+|+++|++..+.. ||+++++++|++...|++.++.
T Consensus 166 llDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 166 LLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 58999999999999999999887743 7899999999998865 9999999999999988877654
No 206
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.60 E-value=2.1e-15 Score=85.12 Aligned_cols=57 Identities=21% Similarity=0.354 Sum_probs=51.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~ 57 (79)
+|||||++||+..+..+.+.+.... .++|+|++||++..+.. +|+++++++|++...
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 6899999999999999999998774 48899999999998865 999999999998764
No 207
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.60 E-value=1.9e-15 Score=85.03 Aligned_cols=58 Identities=28% Similarity=0.349 Sum_probs=51.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~ 58 (79)
+|||||++||+..+..+.+.+.++. .+.|+|++||++..+.. +++++++++|++++.|
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 153 LMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 5899999999999999999988764 37899999999998866 9999999999987754
No 208
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.8e-15 Score=85.28 Aligned_cols=58 Identities=28% Similarity=0.355 Sum_probs=51.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~ 58 (79)
+|||||++||+..+..+.+.+.+.. + +.|+|++||+++.+.. ||+++++++|++...|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 6899999999999999999988764 3 7899999999999865 9999999999987654
No 209
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.59 E-value=2.8e-15 Score=84.69 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=51.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 57 (79)
+|||||++||+..+..+.+.+.+...+.|+|++||+++.+..||+++++++|+++..
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 163 LLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219 (220)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeec
Confidence 689999999999999999999887656899999999997755999999999998754
No 210
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.59 E-value=3.1e-15 Score=87.13 Aligned_cols=65 Identities=25% Similarity=0.308 Sum_probs=57.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++.+ +.|+|+++|+++.+.. ||+++++.+|+++..++..++..
T Consensus 177 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 177 LLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcC
Confidence 58999999999999999999987643 7899999999998865 99999999999999888776643
No 211
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.59 E-value=7.1e-15 Score=84.02 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=58.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.+... ++|+|++||++..+.. ||+++++++|++.+.++...+...
T Consensus 153 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 153 LLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 58999999999999999999887643 7899999999998865 999999999999998887776543
No 212
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.59 E-value=2e-15 Score=85.98 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=54.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||++++|++|+++..|+...+
T Consensus 137 lLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 137 LLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 6899999999999999999888764 37899999999998865 999999999999887765433
No 213
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.59 E-value=3.3e-15 Score=84.64 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=55.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS 62 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~ 62 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||++..+.. ||+++.+++|++...+++.+
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 5899999999999999999998775 47899999999999865 99999999999998887653
No 214
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=4.9e-15 Score=84.45 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=58.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.++.+ +.|+|+++|++..+.. ||+++++++|++...++..+....
T Consensus 153 llDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 153 LLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 68999999999999999999987753 8899999999999865 999999999999998887776544
No 215
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=5.4e-15 Score=85.54 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=58.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC-----ceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA-----GQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~-----G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+.....+.+.+.... .+.|+|++||++..+.. ||++++|++ |+++..+++.++...
T Consensus 173 lLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 173 LMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS 246 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhC
Confidence 6899999999999999999888753 48999999999999865 999999999 999999998887654
No 216
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=3.2e-15 Score=86.22 Aligned_cols=72 Identities=32% Similarity=0.390 Sum_probs=63.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 72 (79)
|.|||+|+||...+.++.+++..+.. +.+.+||+||+..+.. +|++.+|..|++++.|+..++..++.+-++
T Consensus 132 V~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYT 206 (268)
T COG4608 132 VADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYT 206 (268)
T ss_pred EecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHH
Confidence 58999999999999999999887753 9999999999999977 999999999999999999888776666443
No 217
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.3e-15 Score=93.53 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+++..+.. +.|+|++||+++++.. ||+++++++|+++..+...+.
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 68999999999999999999887654 8899999999999966 999999999999988876554
No 218
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2.6e-15 Score=84.40 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=51.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~ 57 (79)
+|||||++||+..+..+.+.+.++. .+.|+|++||++..+.. ||+++++++|++...
T Consensus 151 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 151 LLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 6899999999999999999998774 37899999999999866 999999999998754
No 219
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.59 E-value=3.4e-15 Score=84.70 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=56.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||+++++ +|+++..++..++..
T Consensus 136 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 136 LLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 5899999999999999999998775 48899999999998865 9999999 799999888877654
No 220
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=7.4e-15 Score=85.39 Aligned_cols=65 Identities=23% Similarity=0.417 Sum_probs=56.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.++.. +.|+|+++|+++.+..||++++|++|++...++..++..
T Consensus 165 lLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 165 IFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 68999999999999999999987753 489999999999886699999999999998887766543
No 221
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=5.8e-15 Score=84.30 Aligned_cols=66 Identities=24% Similarity=0.407 Sum_probs=57.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+...+.+... +.|+|++||++..+.. ||++++|++|+++..+++..+...
T Consensus 152 llDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 152 LLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 58999999999999999998887643 8899999999999865 999999999999998887766543
No 222
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.8e-15 Score=93.26 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=56.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+.++.. +.|+|++||++..+.. ||+++++++|+++..|++.++
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 168 IMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 68999999999999999999887754 8899999999999965 999999999999888877654
No 223
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.58 E-value=2.1e-15 Score=85.07 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=48.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i 54 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||++++|++|++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 5899999999999999999988764 48899999999998865 999999999864
No 224
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.58 E-value=6e-15 Score=84.61 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=55.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc--CCEEEEEeCceEeeecChhH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNHKS 62 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~~~ 62 (79)
+|||||++||+.....+.+.+..+.. ++|+|++||++..+.. +|+++++++|++...|++..
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 168 ILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 68999999999999999998887654 7899999999998865 79999999999999888764
No 225
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.58 E-value=2.7e-15 Score=84.11 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=49.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 55 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~ 55 (79)
+|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 5899999999999999999998774 58899999999999865 9999999999864
No 226
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.58 E-value=5.5e-15 Score=84.98 Aligned_cols=61 Identities=20% Similarity=0.419 Sum_probs=54.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc--CCEEEEEeCceEeeecChh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNHK 61 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~~ 61 (79)
+|||||++||+.....+.+.+.++. .+.|+|++||+++.+.. +|+++++++|+++..|++.
T Consensus 174 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 174 ILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 6899999999999999999998775 48999999999998853 7999999999999988776
No 227
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.58 E-value=4.8e-15 Score=92.40 Aligned_cols=64 Identities=17% Similarity=0.357 Sum_probs=56.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
||||||++||+.....+.+.+..+. . +.|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus 450 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 450 ILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 6899999999999999999988764 3 7899999999999866 9999999999999888776553
No 228
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=9.9e-15 Score=85.47 Aligned_cols=66 Identities=20% Similarity=0.377 Sum_probs=57.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEE-EEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIV-VLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~-~l~~G~i~~~~~~~~~~~~ 66 (79)
||||||++||+.....+.+.+.++.++.|+|+++|+++.+.. +|+++ ++++|+++..+++.++...
T Consensus 203 LLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 203 LMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence 689999999999999999999888666899999999999866 99975 5799999998888776543
No 229
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.58 E-value=3.7e-15 Score=90.24 Aligned_cols=73 Identities=32% Similarity=0.420 Sum_probs=64.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL 73 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 73 (79)
|=||||++||...+.++.+++..+. .|.++++||||+..+.. +|+|++|.+|++++.|....++..+.+-++.
T Consensus 180 IADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr 255 (534)
T COG4172 180 IADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTR 255 (534)
T ss_pred eecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHH
Confidence 3499999999999999999998774 39999999999999976 9999999999999999999988877775544
No 230
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=4e-15 Score=84.15 Aligned_cols=59 Identities=32% Similarity=0.393 Sum_probs=51.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEe--CceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQ--AGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~--~G~i~~~~~ 59 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|+++|+++.+.. ||++++|+ +|+++..++
T Consensus 154 lLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 217 (220)
T cd03293 154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVE 217 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEE
Confidence 6899999999999999999988763 37899999999998865 99999999 799887654
No 231
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.58 E-value=4.3e-15 Score=91.75 Aligned_cols=59 Identities=25% Similarity=0.351 Sum_probs=53.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~ 59 (79)
|||||||+|+......+...++++. .|.++|||||.++++.. ||++.+|++|+.+...+
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 6999999999999998988888876 59999999999999976 99999999999887665
No 232
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=4e-15 Score=83.61 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=50.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~ 57 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|+++|++..+.. ||+++++++|++...
T Consensus 151 llDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 151 ILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 6899999999999999999988764 47899999999998865 999999999998764
No 233
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.58 E-value=3.3e-15 Score=93.04 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=56.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
||||||++||+..+..+.+.+..+. ++.|+|++||+++++.. ||+++++++|+++..+.+.++.
T Consensus 426 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 426 IVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred EECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 6899999999999999999988765 48899999999999966 9999999999999888765543
No 234
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.58 E-value=4.4e-15 Score=92.48 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=56.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+.....+.+.+..+. .+.|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 6899999999999999999988764 48899999999999865 9999999999999888876653
No 235
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.58 E-value=4.1e-15 Score=84.09 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=49.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIV 55 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 55 (79)
+|||||++||+..+..+.+.+..+. .+.|+|++||+++.+..+|++++|++|+++
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 6899999999999999999998774 378999999999988669999999999864
No 236
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.57 E-value=5.1e-15 Score=81.65 Aligned_cols=57 Identities=28% Similarity=0.417 Sum_probs=50.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~ 57 (79)
+|||||++||+.....+.+.+.+... +.|+|+++|+++.+.. +|+++++.+|++...
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 58999999999999999999987754 7899999999999855 999999999998653
No 237
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=5.5e-15 Score=84.24 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=52.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~ 59 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+..++++++|.+|+++..++
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 168 LADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 5899999999999999999998764 3789999999999987777999999999987664
No 238
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.57 E-value=5.9e-15 Score=92.01 Aligned_cols=64 Identities=27% Similarity=0.424 Sum_probs=56.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+.....+.+.+.++. + +.|+|++||++..+.. ||++++|++|++...|++.++.
T Consensus 191 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHH
Confidence 6899999999999999999988773 3 8899999999999865 9999999999998888776653
No 239
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.57 E-value=7.6e-15 Score=82.99 Aligned_cols=59 Identities=37% Similarity=0.584 Sum_probs=53.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~ 59 (79)
+|||||++||+..+..+.+.+.+...+.|+|+++|++..+..||++++|++|++...++
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 58999999999999999999988766789999999999887799999999999887654
No 240
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.57 E-value=9.9e-15 Score=90.97 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=58.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
||||||++||+..+..+.+.+.++. .++|+|+++|+++.+.. ||++++|.+|++...|++.++...
T Consensus 166 LLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 166 VIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 6899999999999999988888764 48899999999999866 999999999999999988776543
No 241
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.57 E-value=5.9e-15 Score=80.35 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=50.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~ 56 (79)
+|||||++||+..+..+.+.+.++. .+.|+|+++|++..+.. +|+++++++|++.+
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 5899999999999999999998774 48899999999998865 99999999999864
No 242
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.6e-15 Score=92.71 Aligned_cols=63 Identities=16% Similarity=0.313 Sum_probs=55.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+..+. .+.|+|++||++..+.. ||+++++++|+++..++..++
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 166 ILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 6899999999999999999988764 47899999999999865 999999999999888776544
No 243
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.57 E-value=6.3e-15 Score=88.05 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=62.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
+||||.|+||...+..+..-+.+.. .|.|.|+||||.+++.. +|++.+|++|+|...|++.++...+.+.+
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~f 232 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRF 232 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHH
Confidence 5899999999999988887776653 39999999999998865 99999999999999999999987776654
No 244
>PLN03232 ABC transporter C family member; Provisional
Probab=99.57 E-value=1.3e-14 Score=98.61 Aligned_cols=74 Identities=26% Similarity=0.359 Sum_probs=61.8
Q ss_pred CCcccccCCCHHHHHHH-HHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLV-QAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~-~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+||||||+||+.+...+ .+++....+++|+|++||+++.+..+|+|++|++|++++.|++.++......+..++
T Consensus 763 LLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~ 837 (1495)
T PLN03232 763 IFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLM 837 (1495)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHH
Confidence 68999999999987755 556666667899999999999888899999999999999999988876555555444
No 245
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.57 E-value=5.8e-15 Score=85.41 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=52.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecCh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNH 60 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~ 60 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||+++++++|+++..++.
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 6899999999999999999888763 37899999999998865 999999999999886653
No 246
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.57 E-value=4.4e-15 Score=92.26 Aligned_cols=63 Identities=14% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+.... ++.|+|++||+++.+.. ||+++++++|+++..++..++
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 6899999999999999999998775 48899999999999866 999999999999887776554
No 247
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.9e-15 Score=91.51 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=55.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+.....+.+.+..+. .+.|+|++||+++++.. ||++++|++|+++..++..+.
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 6899999999999999999888764 48899999999999865 999999999999988876553
No 248
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.3e-14 Score=85.69 Aligned_cols=66 Identities=21% Similarity=0.379 Sum_probs=57.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEE-EEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLI-VVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v-~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.++..+.|+|+++|+++.+.. ||++ +++++|+++..|++.++...
T Consensus 223 LLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 223 LMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHhC
Confidence 689999999999999999999887667899999999999865 9996 57799999999988877543
No 249
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.56 E-value=8.1e-15 Score=82.61 Aligned_cols=59 Identities=31% Similarity=0.410 Sum_probs=52.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~ 59 (79)
+|||||++||+..+..+.+.+.+.. . +.|+|+++|+...+.. +|++++|.+|++...|.
T Consensus 151 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 151 LLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 5899999999999999999988764 3 7899999999998865 99999999999988764
No 250
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.56 E-value=7e-15 Score=83.52 Aligned_cols=58 Identities=26% Similarity=0.356 Sum_probs=51.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~ 58 (79)
+|||||++||+..+..+.+.+..... +.|+|+++|+++.+.. +|+++++++|++...|
T Consensus 165 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 68999999999999999998887643 7899999999998865 9999999999987643
No 251
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.56 E-value=7.7e-15 Score=83.86 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=51.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~ 58 (79)
+|||||++||+..+..+.+.+.++.. +.|+|++||+++.+.. +|+++++.+|++...|
T Consensus 176 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 68999999999999999999987643 7899999999998865 9999999999987643
No 252
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.56 E-value=5.6e-15 Score=91.81 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=55.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..++..++
T Consensus 164 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 164 IMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 5899999999999999998888764 47899999999999866 999999999999887766543
No 253
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.56 E-value=4.4e-15 Score=83.80 Aligned_cols=54 Identities=30% Similarity=0.385 Sum_probs=48.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i 54 (79)
+|||||++||+..+..+.+.+.++.. +.|+|+++|+++.+..||++++|++|++
T Consensus 163 lLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 163 LADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 68999999999999999999988753 7899999999988767999999999863
No 254
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.56 E-value=3.1e-14 Score=83.36 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=55.3
Q ss_pred CCcccccCCCHHHHHHHHHH-HHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~-~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+... +.....+.|+|+++|++..+..||++++|++|++...|+..++..
T Consensus 182 iLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 182 LLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 68999999999998877764 455555789999999999886699999999999999888877654
No 255
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.3e-15 Score=90.95 Aligned_cols=60 Identities=17% Similarity=0.353 Sum_probs=53.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecCh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNH 60 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~ 60 (79)
||||||++||+.....+.+.+..+. .+.|+|++||++..+.. ||+++++++|++...++.
T Consensus 432 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 432 IFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred EECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 6899999999999999999998764 48899999999998865 999999999999877654
No 256
>PLN03130 ABC transporter C family member; Provisional
Probab=99.55 E-value=2.3e-14 Score=97.92 Aligned_cols=74 Identities=24% Similarity=0.379 Sum_probs=62.0
Q ss_pred CCcccccCCCHHHHHHH-HHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLV-QAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~-~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+||||||+||+.+...+ .+++....+++|+|++||++..+..+|+|++|++|++.+.|++.++......+..++
T Consensus 763 LLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~ 837 (1622)
T PLN03130 763 IFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLM 837 (1622)
T ss_pred EECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHH
Confidence 69999999999977655 566766667899999999999888899999999999999999998876555555444
No 257
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.55 E-value=7.1e-15 Score=91.28 Aligned_cols=62 Identities=21% Similarity=0.364 Sum_probs=54.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS 62 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~ 62 (79)
+|||||++||+.....+.+.+.++. .+.|+|++||+++++.. ||++++|++|+++..++..+
T Consensus 164 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 164 ILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 5899999999999999999988764 48899999999999966 99999999999988776543
No 258
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.55 E-value=1.8e-14 Score=80.67 Aligned_cols=62 Identities=31% Similarity=0.473 Sum_probs=54.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccc--cCCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQ--NADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~--~~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+.....+.+.+.+..+ ++|+|+++|+++.+. .+|+++++++|++...+ +.++
T Consensus 127 llDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~ 191 (200)
T cd03217 127 ILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL 191 (200)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHH
Confidence 58999999999999999999887754 789999999999886 69999999999999887 4334
No 259
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.55 E-value=1.1e-14 Score=82.67 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=50.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCccccccCCEEEEEeCceEee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVE 56 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 56 (79)
+|||||++||+..+..+.+.+.+.. . +.|+|+++|+++.+..+|+++++++|++.+
T Consensus 169 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 169 FADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 6899999999999999999998764 3 789999999999886699999999999865
No 260
>PRK10908 cell division protein FtsE; Provisional
Probab=99.55 E-value=9.5e-15 Score=82.73 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=49.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~ 56 (79)
+|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 6899999999999999999888764 47899999999999976 99999999999754
No 261
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.55 E-value=7.1e-15 Score=80.64 Aligned_cols=54 Identities=35% Similarity=0.494 Sum_probs=48.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i 54 (79)
+|||||++||+..+..+.+.+..+.+ +.|+|+++|+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 58999999999999999999987754 8899999999998866999999999863
No 262
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=1.3e-14 Score=80.77 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=50.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccc-c-ccCCEEEEEeC-ceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLST-V-QNADLIVVLQA-GQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~~ 58 (79)
+|||||++||+..+..+.+.+.+... ++|+|++||+++. + ..||++++|++ |+++..|
T Consensus 131 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 131 FLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 58999999999999999999887654 8899999999984 5 45999999998 9987643
No 263
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.55 E-value=1.5e-14 Score=80.61 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=49.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcc-cccc-CCEEEEEeCceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLS-TVQN-ADLIVVLQAGQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~-~~~~-~d~v~~l~~G~i~~~ 57 (79)
+|||||++||+..+..+.+.+.++. .++|+|+++|++. .+.. +|+++++++|++...
T Consensus 134 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 134 FLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 5899999999999999999998775 4899999999996 5654 999999999998764
No 264
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.55 E-value=6.7e-15 Score=82.72 Aligned_cols=53 Identities=23% Similarity=0.433 Sum_probs=47.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~ 53 (79)
+|||||++||+..+..+.+.+.++.. +.|+|++||+++.+.. ||++++|++|+
T Consensus 157 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 68999999999999999999987754 8899999999999876 99999999874
No 265
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.55 E-value=1.1e-14 Score=82.04 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=48.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~ 56 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||++++|++| +++
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~ 211 (213)
T cd03235 155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVA 211 (213)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eee
Confidence 6899999999999999999988765 58899999999999865 9999999876 444
No 266
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.54 E-value=1.4e-14 Score=83.95 Aligned_cols=60 Identities=30% Similarity=0.423 Sum_probs=53.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecCh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNH 60 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~ 60 (79)
+|||||++||+.....+.+.+.... .+.|+|+++|+++.+..+|+++.| ++|+++..|++
T Consensus 195 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 195 ILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 6899999999999999998888765 489999999999988779999999 78999888753
No 267
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.1e-14 Score=90.23 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=54.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHK 61 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~ 61 (79)
+|||||++||+..+..+.+.+..+. .+.|+|++||+++++.. ||+++++++|+++..++..
T Consensus 414 lLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 414 MLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred EEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 6899999999999999999988764 48999999999999966 9999999999998766553
No 268
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.54 E-value=7.6e-15 Score=82.61 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=48.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i 54 (79)
+|||||++||+..+..+.+.+.++. .+.|+|++||++..+.. ||++++|++|++
T Consensus 159 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 159 IADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 5899999999999999999998764 48899999999999875 999999999863
No 269
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.8e-14 Score=83.86 Aligned_cols=63 Identities=21% Similarity=0.374 Sum_probs=54.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+..+..+.+.+..+. .+.|+|+++|+++.+.. ||+++.+ +|++...|++.++.
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 5899999999999999999998775 48899999999998855 9999777 89999888877654
No 270
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.54 E-value=1.1e-14 Score=90.42 Aligned_cols=60 Identities=12% Similarity=0.219 Sum_probs=53.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecCh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNH 60 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~ 60 (79)
+|||||++||+..+..+.+++..+. .+.|+|++||+++++.. ||+++++++|+++...+.
T Consensus 426 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~ 487 (500)
T TIGR02633 426 ILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVN 487 (500)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 6899999999999999998888764 48899999999999966 999999999999876644
No 271
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.54 E-value=8.5e-15 Score=82.46 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=47.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~ 53 (79)
+|||||++||+..+..+.+.+.++. .++|+|++||+++.+.. ||++++|++|+
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 6899999999999999999998774 48999999999999876 99999999874
No 272
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.54 E-value=2.8e-14 Score=96.86 Aligned_cols=75 Identities=41% Similarity=0.642 Sum_probs=64.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCc--------------------------
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAG-------------------------- 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G-------------------------- 52 (79)
+||||||+||+.++..+.+.+..+. .++|+|+++|+++.+..+|++++|++|
T Consensus 602 lLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 681 (1466)
T PTZ00265 602 ILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKN 681 (1466)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccc
Confidence 6999999999999999999998875 489999999999988779999999986
Q ss_pred ---------------------eEeeecChhHHhh-ccchHHHHHh
Q psy10474 53 ---------------------QIVEMGNHKSLLA-KKGHYWTLMN 75 (79)
Q Consensus 53 ---------------------~i~~~~~~~~~~~-~~~~~~~~~~ 75 (79)
+++++|++.++.. ..+.++.+++
T Consensus 682 ~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~ 726 (1466)
T PTZ00265 682 NKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMIN 726 (1466)
T ss_pred ccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHh
Confidence 4899999999876 4566666653
No 273
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.54 E-value=1.9e-14 Score=81.70 Aligned_cols=58 Identities=26% Similarity=0.346 Sum_probs=50.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCc-ccccc-CCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRL-STVQN-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~-~~~~~-~d~v~~l~~G~i~~~~ 58 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|+++|++ ..+.. +|+++++++|+++..|
T Consensus 166 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 6899999999999999999988764 478999999998 46654 9999999999987654
No 274
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.53 E-value=2.2e-14 Score=99.35 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=59.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+++.+..+++|+|++||+++++.. ||++++|++|++...|++..+.+
T Consensus 1084 LLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1084 VLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 589999999999999999999888778999999999999976 99999999999999998876643
No 275
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1.7e-14 Score=83.33 Aligned_cols=59 Identities=27% Similarity=0.317 Sum_probs=51.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEe--CceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQ--AGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~--~G~i~~~~~ 59 (79)
+|||||++||+..+..+.+.+.+.. .++|+|++||+++.+.. ||++++|+ +|+++..++
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 6899999999999999999998763 38999999999998865 99999998 599887654
No 276
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.5e-14 Score=86.02 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=62.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
+||||.|+||+..+..+...+..+.+ +.|+|+||||..++.. +|++.+|.+|++...|++.++...+.+.+
T Consensus 156 L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~f 229 (338)
T COG3839 156 LLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF 229 (338)
T ss_pred EecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchh
Confidence 58999999999999888887776643 8899999999998855 99999999999999999999987776654
No 277
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.53 E-value=1.2e-14 Score=81.80 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=48.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i 54 (79)
+|||||++||+..+..+.+.+.++.. +.|+|++||++..+.. ||++++|++|++
T Consensus 158 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 158 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 68999999999999999999988754 7899999999999865 999999999864
No 278
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.52 E-value=1.3e-14 Score=80.11 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=48.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i 54 (79)
+|||||++||+..+..+.+.+.++. .+.|+|+++|+++.+.. ||+++++++|++
T Consensus 127 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 127 ILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 5899999999999999999998774 47899999999998866 999999999863
No 279
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.4e-14 Score=89.02 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=52.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~ 59 (79)
+|||||++||+.....+.+.+..+. .+.|+|++||+++.+.. ||++++|++|+++..+.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 6899999999999999999888765 48899999999999866 99999999999876543
No 280
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.52 E-value=4.7e-14 Score=79.68 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=55.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+||||++++|+..+..+...+....+++++|+++|++..+.. ||++++|.+|+++..++.....+
T Consensus 127 llDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 127 IADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred EECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 589999999999998888877554456789999999999865 99999999999999888766543
No 281
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.52 E-value=2.7e-14 Score=98.98 Aligned_cols=64 Identities=14% Similarity=0.342 Sum_probs=58.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+..++.+++.+.+.. +++|+|++||+++++.. ||++++|.+|++...|++.++.
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 5899999999999999999998764 48999999999999976 9999999999999999887764
No 282
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.52 E-value=2.2e-14 Score=81.41 Aligned_cols=54 Identities=26% Similarity=0.393 Sum_probs=49.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCccccccCCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i 54 (79)
+-||||++||..+...+..++.... + +.|+|+|||++..+..|||++.+.+|++
T Consensus 165 lADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 165 LADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred EeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 3599999999999999999998874 3 8899999999999999999999999984
No 283
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=2.5e-14 Score=78.33 Aligned_cols=53 Identities=49% Similarity=0.723 Sum_probs=48.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~ 53 (79)
+|||||++||+.....+.+.+.+..+++|+|++||+++.+..||+++++++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 58999999999999999999988766789999999999886699999999874
No 284
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.52 E-value=3.3e-14 Score=81.99 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=54.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.+.. . +.|+|++||+++.+.. ||++++++ |+++..|++.++..
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~~ 209 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVSL 209 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHhC
Confidence 5899999999999999999888764 3 7899999999999865 99999996 57888888776643
No 285
>PLN03211 ABC transporter G-25; Provisional
Probab=99.52 E-value=3.6e-14 Score=90.63 Aligned_cols=64 Identities=25% Similarity=0.321 Sum_probs=56.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccc-cc-cCCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLST-VQ-NADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~-~~-~~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+.++..+.+.+..+. .++|+|+++|+++. +. .+|+++++++|+++..|+..++.
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 5899999999999999999998775 48999999999984 54 49999999999999999877654
No 286
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=2e-14 Score=78.83 Aligned_cols=54 Identities=28% Similarity=0.419 Sum_probs=48.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i 54 (79)
+|||||++||+..+..+.+.+.+.. ++.|+|++||++..+.. +|+++++++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 5899999999999999999998875 37899999999998875 999999999863
No 287
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.51 E-value=2.6e-14 Score=81.11 Aligned_cols=54 Identities=56% Similarity=0.639 Sum_probs=48.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i 54 (79)
+|||||++||+..+..+.+.+..+..+.|+|++||+++.+..||+++++++|++
T Consensus 173 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 173 ILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 689999999999999999999887667899999999998866999999998863
No 288
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.51 E-value=6.1e-14 Score=76.59 Aligned_cols=63 Identities=24% Similarity=0.433 Sum_probs=57.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++|||.-...+..++.++.. |.|-+++||..+.+.. +.+|+.|.+|+|++.|+.+-+
T Consensus 164 lfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 164 LFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred eecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 58999999999999999999988876 9999999999999966 999999999999999987655
No 289
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.6e-14 Score=88.26 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=55.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~ 65 (79)
+|||||++||+.....+.+.+... +.|+|++||+++.+.. ||+++++++|+++ ..|++.++..
T Consensus 461 lLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 461 VMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 689999999999999999988876 4599999999999876 9999999999997 6777776643
No 290
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.50 E-value=1.2e-13 Score=94.26 Aligned_cols=73 Identities=27% Similarity=0.454 Sum_probs=60.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHH---hcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALES---ACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL 73 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~---~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 73 (79)
+||||||+||+.+...+.+.+.. ..+++|+|++||+++.+..+|++++|++|++...|++.++......+..+
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l 858 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEF 858 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHH
Confidence 58999999999998888776643 34589999999999998789999999999999999998876544444443
No 291
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.5e-14 Score=81.76 Aligned_cols=52 Identities=27% Similarity=0.300 Sum_probs=46.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G 52 (79)
+||||++|||+.++..+++.+.+.. + ++|+++|||+.+++.. +|||++|.++
T Consensus 153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 5899999999999999988877654 3 8999999999999965 9999999984
No 292
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=7.9e-14 Score=87.20 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=53.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~ 64 (79)
+|||||++||+.....+.+.+.+ .+.|+|+++|++..+.. ||+++++++|++. ..|++.++.
T Consensus 178 lLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 178 LLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 58999999999999999888864 47899999999999866 9999999999994 678776654
No 293
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=6.8e-14 Score=89.16 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~ 63 (79)
||||||++||+.....+.+.+... +.|+|+|||++.++.. ||+++++.+|++. ..|++.+.
T Consensus 453 lLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 453 LLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 699999999999999999999876 3599999999999976 9999999999997 67777765
No 294
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.48 E-value=9e-14 Score=91.33 Aligned_cols=65 Identities=20% Similarity=0.384 Sum_probs=58.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~ 65 (79)
||||||++||+.....+...+.++.. |.|+|+|+|+++.+..+|++++| ++|+++..|++.++..
T Consensus 514 ILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 514 VLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 69999999999999999999887754 89999999999988779999999 8899999998887744
No 295
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.48 E-value=1.1e-13 Score=87.99 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=56.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcc-cc-ccCCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLS-TV-QNADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+.+...+.+.+..... ++|+|+++|++. .+ ..+|++++|++|++++.|++.++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 58999999999999999998887754 899999999996 45 459999999999999999987753
No 296
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.47 E-value=5.1e-14 Score=77.63 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=48.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIV 55 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 55 (79)
+|||||++||+.....+.+.+.+.. .+.|+|++||++..+..+|++++|.+|+..
T Consensus 112 LlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~ 167 (176)
T cd03238 112 ILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGK 167 (176)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCC
Confidence 5899999999999999999888765 489999999999987669999999877643
No 297
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.47 E-value=1.4e-13 Score=86.42 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=50.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~ 58 (79)
+||||||+||+.+...+.+.+.... .++|+|+++|+++.+..+|+++++++|++.+..
T Consensus 472 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 472 LLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 6899999999999998887776443 489999999999887779999999999998763
No 298
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=1.4e-13 Score=90.25 Aligned_cols=64 Identities=20% Similarity=0.401 Sum_probs=57.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~ 64 (79)
||||||++||+.....+.+.+.++.. |.|+|+|+|+++.+..||+++.| ++|+++..|++.++.
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 69999999999999999999887754 89999999999988779999999 899999999887764
No 299
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.46 E-value=2.9e-13 Score=92.22 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=58.1
Q ss_pred CCcccccCCCHHHHHHHHH-HHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQA-ALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~-~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+||||+|+||+.+...+.+ ++....+++|+|++||++..+..+|++++|++|++...|++.++...
T Consensus 571 lLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 571 LLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 5899999999999888876 46666679999999999999877999999999999999998887654
No 300
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.46 E-value=6.2e-14 Score=79.63 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=50.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEe-CceEeeecCh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQ-AGQIVEMGNH 60 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~-~G~i~~~~~~ 60 (79)
+|||||++||+.....+.+.+.++. .+.|+|+++|+++.+..||++++++ ++..+.+|++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhh
Confidence 6899999999999999999988764 3789999999999886699999995 5555555654
No 301
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=7.6e-14 Score=76.87 Aligned_cols=53 Identities=36% Similarity=0.470 Sum_probs=47.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~ 53 (79)
+|||||++||+..+..+.+.+.+... +.|+|+++|++..+.. ||++++|++|+
T Consensus 123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 58999999999999999999887654 6899999999999975 99999999874
No 302
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.46 E-value=2e-13 Score=85.83 Aligned_cols=57 Identities=26% Similarity=0.401 Sum_probs=48.8
Q ss_pred CCcccccCCCHHHHHHHHHHH-HHh-cCCCEEEEEccCccccccCCEEEEEeCceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAAL-ESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~-~~~-~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 57 (79)
|||||||+||+.++..+.+.+ ... ..++|+|+++|+++.+..+|+++++++|++++.
T Consensus 493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 689999999999999887654 333 358999999999988777999999999998764
No 303
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.45 E-value=2.4e-13 Score=85.51 Aligned_cols=61 Identities=26% Similarity=0.245 Sum_probs=53.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~ 63 (79)
+|||||++||+.....+.+.+.... .|+|++||+++.+.. ||++++|++|+++ ..|++...
T Consensus 186 LLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 186 LLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 6899999999999999999888763 599999999999976 9999999999986 66776654
No 304
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=9.4e-14 Score=79.03 Aligned_cols=63 Identities=33% Similarity=0.339 Sum_probs=56.7
Q ss_pred CcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 2 FRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
=|||+++|||.+...+++.+.... .|.|+|+..|+++.+.. |+|++-|++|+++..|++.++.
T Consensus 171 ADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 171 ADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred cCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 399999999999999999888764 48999999999999966 9999999999999999987753
No 305
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.44 E-value=1.8e-13 Score=77.46 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=47.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i 54 (79)
+|||||++||+..+..+...+.... .++|+|+++|+++....||++++|.+|++
T Consensus 164 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 164 LADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 5899999999999999999988765 37999999999986555999999999975
No 306
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.44 E-value=3.1e-13 Score=84.95 Aligned_cols=62 Identities=27% Similarity=0.284 Sum_probs=53.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~ 64 (79)
+|||||++||+.....+.+.+... +.|+|++||++..+.. ||+++++++|+++ ..|++.++.
T Consensus 184 LLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 184 LLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred EEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 689999999999999999888765 3599999999999976 9999999999975 667776643
No 307
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.43 E-value=1.3e-13 Score=79.99 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=58.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
.|||||-+||...+..+.+++.+.. .+.||++.||+++.+.. |++|+.++.|+++..|+.+.+..
T Consensus 179 fLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 179 FLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred EecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 3899999999999999999998875 49999999999999966 99999999999999888776544
No 308
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=3.7e-13 Score=75.46 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=46.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccC-cccccc-CCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHR-LSTVQN-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~-~~~~~~-~d~v~~l~~G~i~~~~ 58 (79)
+|||||++||+..+..+.+.+.+..+ +.++|+++|+ .+.+.. ||++++|++|+++..|
T Consensus 141 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 141 CWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 58999999999999999999988753 5676776655 466654 9999999999987643
No 309
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.43 E-value=2.4e-13 Score=72.83 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=45.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~ 53 (79)
+||||+++||+..+..+.+.+.++ +.|+++++|+++.+.. ||+++++++|+
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 589999999999999999988876 5799999999999865 99999999885
No 310
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.42 E-value=4.7e-13 Score=85.30 Aligned_cols=62 Identities=27% Similarity=0.376 Sum_probs=53.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEee-ecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE-MGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~~~~~~~~ 64 (79)
+|||||++||+.....+.+.+..+ +.|+|+|||+..++.. |++++.+++|++.. .|++....
T Consensus 179 LLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 179 LLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred EEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 689999999999999999998876 3599999999999976 99999999999974 57776643
No 311
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.42 E-value=3.9e-13 Score=85.84 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=57.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+..+..+.+.+.++. .+.|+|+++|+++.+..||+++++++|++.+.|+.++..
T Consensus 167 llDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 167 LADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 5899999999999999999998775 489999999999987669999999999999988877553
No 312
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.41 E-value=5.3e-13 Score=74.70 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=62.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY 70 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 70 (79)
+||||++++||.....++.++..+.. +..+++.-|...+... |||.+++..|++...|++.++..++...
T Consensus 162 LLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr 233 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVR 233 (243)
T ss_pred EecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhh
Confidence 58999999999999999999988864 8899999999988865 9999999999999999999998765543
No 313
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=6.2e-13 Score=84.83 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=53.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~ 64 (79)
+|||||++||+.....+...+... +.|+|+|||+..++.. |++++.+++|++. ..|++....
T Consensus 172 LLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 172 LLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 699999999999999988888765 5699999999999976 9999999999986 457766553
No 314
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.41 E-value=5.8e-13 Score=90.39 Aligned_cols=61 Identities=23% Similarity=0.355 Sum_probs=53.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccc--ccCCEEEEEeCc-eEeeecChh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTV--QNADLIVVLQAG-QIVEMGNHK 61 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~--~~~d~v~~l~~G-~i~~~~~~~ 61 (79)
+||||||+||+.++..+.+.+++.+ .++|+|+++|+++.. ..+|++++|++| ++++.|+..
T Consensus 925 lLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 925 FLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 5899999999999999999998874 589999999999863 459999999987 999988764
No 315
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.41 E-value=7.7e-13 Score=87.05 Aligned_cols=68 Identities=26% Similarity=0.399 Sum_probs=60.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKG 68 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~~ 68 (79)
||||||++||+.....+.+.+.++. .+.|+|+++|+++.+..+|+++.| .+|+++..|++.++...+.
T Consensus 856 ILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 856 ILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 6899999999999999999888775 488999999999988779999999 6899999999988875443
No 316
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.40 E-value=6.6e-13 Score=76.49 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=46.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~ 53 (79)
+|||||++||+..+..+.+.+.+.. .++|+|++||++..+.. ||++++++++.
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 6899999999999999999988774 37899999999999875 99999997643
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.40 E-value=6.2e-13 Score=72.61 Aligned_cols=51 Identities=31% Similarity=0.324 Sum_probs=44.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~ 53 (79)
+|||||++||+..+..+.+.+... +.|+|++||++.....||+++++++|.
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 589999999999999999888876 589999999998665699999998763
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.39 E-value=4.5e-13 Score=73.95 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=47.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 55 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~ 55 (79)
+|||||++||+..+..+.+.+.+.. + +.|+|+++|++..+.. ||++++++++...
T Consensus 94 lLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 94 LFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 5899999999999999999888764 3 4899999999999875 9999999887554
No 319
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.39 E-value=7.2e-13 Score=82.27 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=50.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-C-CEEEEEccCccccc-c-CCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-G-RTVLMIAHRLSTVQ-N-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~-~tvi~vtH~~~~~~-~-~d~v~~l~~G~i~~~~ 58 (79)
+|||||++||+.....+.+.+.+... + .|+|++||+++.+. . ++++++|++|+++...
T Consensus 424 lLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 424 ILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 58999999999999999999988753 4 46999999999885 3 7999999999987643
No 320
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.39 E-value=5.9e-13 Score=81.86 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=52.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~ 59 (79)
||||||+-|-|.....+...+..+. +|+|+|+|||-+.++.. ||++.+|++|+.+...+
T Consensus 163 ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 163 ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 6999999999999888888888775 59999999999999976 99999999999765433
No 321
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.38 E-value=8.5e-13 Score=73.97 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=44.5
Q ss_pred CCcccccCCCHHHHHHHHH-HHHHhc-CCCEEEEEccCccccccCCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQA-ALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~-~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~ 53 (79)
+|||||++||+.....+.+ ++.... .+.|+|+++|++..+..+|++++|++|+
T Consensus 150 llDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 150 LLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 5899999999998887766 555553 4789999999999886699999999874
No 322
>PLN03140 ABC transporter G family member; Provisional
Probab=99.38 E-value=1.1e-12 Score=89.27 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=52.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccc-c-ccCCEEEEEeC-ceEeeecChh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLST-V-QNADLIVVLQA-GQIVEMGNHK 61 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~~~~~ 61 (79)
+||||||+||+..+..+.+.+..... ++|+|+++|+++. + ..+|++++|++ |+++..|+..
T Consensus 1042 ~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 58999999999999999999887754 8999999999984 4 45999999996 8999888753
No 323
>PLN03073 ABC transporter F family; Provisional
Probab=99.38 E-value=1.3e-12 Score=84.31 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=51.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~ 63 (79)
||||||++||+.....+...+... +.|+|++||++.++.. |++++++.+|+++ ..|++.+.
T Consensus 650 LLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 650 LLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 689999999999988887777654 3599999999999976 9999999999987 55665543
No 324
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=8.6e-13 Score=71.33 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=47.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~ 53 (79)
+|||||++||+.....+...+.+... ++|+++++|+++.+.. ||+++.+.+|+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 58999999999999999998887644 6899999999999977 79999998874
No 325
>KOG0054|consensus
Probab=99.37 E-value=2.2e-12 Score=86.94 Aligned_cols=73 Identities=30% Similarity=0.521 Sum_probs=63.7
Q ss_pred CCcccccCCCHHH-HHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474 1 MFRLFGSALDNES-EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL 73 (79)
Q Consensus 1 ~~de~~s~lD~~~-~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 73 (79)
+||-|.||+|.++ +..+.+++....+++|+|++||.++.+..+|.|++|++|+|.+.|++.++.+....+..+
T Consensus 666 LLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l 739 (1381)
T KOG0054|consen 666 LLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAEL 739 (1381)
T ss_pred EEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHH
Confidence 5899999999995 557778887777899999999999999999999999999999999999998655555544
No 326
>PLN03073 ABC transporter F family; Provisional
Probab=99.37 E-value=1.7e-12 Score=83.70 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=53.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~ 63 (79)
+|||||++||+.....+...+..+ +.|+|+++|+..++.. |++++++++|++. +.|++..+
T Consensus 367 lLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 367 LLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 689999999999999999988775 6799999999999976 9999999999996 56666544
No 327
>PTZ00243 ABC transporter; Provisional
Probab=99.36 E-value=2.2e-12 Score=88.36 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=55.4
Q ss_pred CCcccccCCCHHHHHHHH-HHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQ-AALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~-~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+||||||+||+.....+. .++.....++|+|++||++..+..+|++++|++|++...|++.++...
T Consensus 805 lLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 805 LLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 689999999999766554 444444468999999999999877999999999999999998887643
No 328
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.36 E-value=7.2e-13 Score=76.69 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~ 56 (79)
+|||||++||+.....+...+.+... ++|+|+++|++..+.. ||++++++ |++.+
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 58999999999999999988887754 7999999999999875 99999995 55543
No 329
>KOG0059|consensus
Probab=99.36 E-value=8.1e-13 Score=86.74 Aligned_cols=66 Identities=14% Similarity=0.335 Sum_probs=59.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||+|+||..++.++.++.+..+ ++.+|++||.+++++. |+|+.+|.+|++...|.+.++.+.
T Consensus 721 ~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 721 LLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 48999999999999999999998876 5599999999999987 999999999999999998886543
No 330
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.36 E-value=1.7e-12 Score=88.22 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=55.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcc-ccc-cCCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLS-TVQ-NADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+.++..+.+.++.+.. ++|+|+++|++. .+. .+|++++|.+|+++..|+..++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 58999999999999999999988753 889999999974 554 4999999999999999987765
No 331
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.36 E-value=1.4e-12 Score=73.76 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=44.6
Q ss_pred CCcccccCCCHHHHHHHHH--HHHHhcC-CCEEEEEccCccccccCCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQA--ALESACK-GRTVLMIAHRLSTVQNADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~--~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~G~ 53 (79)
+|||||++||+.....+.+ ++..... +.|+|+++|++..+..+|+++++.+|.
T Consensus 163 llDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 163 FLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 5899999999998887776 5555443 789999999999886699999998873
No 332
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=1.8e-12 Score=85.23 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=56.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~ 63 (79)
||||||++||+.....+.+.+.++. .+.|+|+++|++..+..+|+++.| ++|+++..|++.++
T Consensus 854 ILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 854 ILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 6999999999999999999988775 489999999999988779999999 68999998887653
No 333
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.36 E-value=8.5e-13 Score=81.69 Aligned_cols=65 Identities=40% Similarity=0.551 Sum_probs=58.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
|||||-|+||...+..+...+...+ .|.|+|+|+|+++.+..+|++++|++|++...|+..+++.
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 6999999999998887777776664 5999999999999999999999999999999999888764
No 334
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.35 E-value=2.9e-12 Score=80.72 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=52.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeC-ceEe-eecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA-GQIV-EMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~-G~i~-~~~~~~~~~~ 65 (79)
+|||||++||+.....+.+.+.... .|+|++||++..+.. ||+++++++ |++. ..|++.++..
T Consensus 468 lLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 468 LLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 6899999999999999999998763 489999999999866 999999986 7775 4677766544
No 335
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.35 E-value=1.5e-12 Score=73.55 Aligned_cols=53 Identities=23% Similarity=0.158 Sum_probs=47.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~ 53 (79)
+|||||++||+.....+...+....+ +.|+|++||+++.+.. +++++++++|.
T Consensus 156 llDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 156 FIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 58999999999999999888887755 8899999999998866 89999999875
No 336
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.34 E-value=1.9e-12 Score=73.15 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=45.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~ 51 (79)
+|||||++||+.....+.+.+.+.. .+.|+|++||++..+.. |++++.++.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 160 LLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 5899999999999999999987654 47899999999999966 999998864
No 337
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.34 E-value=6.1e-12 Score=71.40 Aligned_cols=71 Identities=24% Similarity=0.237 Sum_probs=62.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
+|||||.+|-|.....+...+..+.+ +.||++|.++...+.. +|+.++|.+|+++..|+..++..++....
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~~ 232 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVRE 232 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHHH
Confidence 58999999999999999888888763 6799999999998865 99999999999999999999887655443
No 338
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=2.1e-12 Score=72.29 Aligned_cols=65 Identities=20% Similarity=0.377 Sum_probs=59.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+||||-++||-.....+++.++.+.. ++|+++|-||..++.. +|.++-|++|+++..|++.++..
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 58999999999999999999888753 9999999999999987 99999999999999999998764
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.33 E-value=3.6e-12 Score=80.24 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=51.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeC-ceEe-eecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQA-GQIV-EMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~-G~i~-~~~~~~~~ 63 (79)
+|||||++||+.....+.+.+.... .|+|++||++..+.. ||++++|++ |++. ..|++.+.
T Consensus 466 lLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 466 LLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 6899999999999999999998763 489999999999876 999999986 5765 44666544
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.33 E-value=3.3e-12 Score=81.53 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=52.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEe-CceEee-ecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQ-AGQIVE-MGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~-~G~i~~-~~~~~~~ 63 (79)
+|||||++||+.....+.+.+... +.|+|+|||+..++.. |++++++. +|++.. .|++.+.
T Consensus 463 lLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 463 ILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 689999999999999999888775 4599999999999866 99999998 799865 5666665
No 341
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.33 E-value=2.5e-12 Score=79.77 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=53.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~ 59 (79)
||||||-++|.-++..++.++.+++. |.++|+++.+++++.. ||||++|+.|++...-.
T Consensus 424 ilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred EECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 68999999999999999999998864 9999999999999976 99999999999987443
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=99.33 E-value=1.9e-12 Score=82.11 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=49.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~ 59 (79)
+|||||++||+.++..+.+.+.+... +.|+|+++|++..+.. ||++++++ |++...|.
T Consensus 476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 68999999999999999999988743 7899999999999866 99999996 56655554
No 343
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.33 E-value=5.7e-12 Score=86.69 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=56.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEe------CceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ------AGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~------~G~i~~~~~~~~~~~ 65 (79)
||||||++||+.....+.+.+..+. .|.|+|+|+|+++.+..||+++.|. +|+++..|++.++..
T Consensus 501 ILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~ 572 (1809)
T PRK00635 501 ILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLA 572 (1809)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhCCEEEEEcCCcccCCCEEEEecCHHHHhh
Confidence 6999999999999999999988875 4899999999999555599999996 778888888777643
No 344
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.32 E-value=1.9e-12 Score=81.02 Aligned_cols=49 Identities=45% Similarity=0.639 Sum_probs=44.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 49 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l 49 (79)
+||||||+||+.+...+.+.+.....++|+|+++|+++.+..+|++++|
T Consensus 481 ilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 481 LLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 6899999999999999999998877799999999999988779999875
No 345
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.4e-12 Score=75.20 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=59.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+||||-++||-..+.++...+++++. ...+++|+|.++++.+ +|+|++|++|++...|+..++...
T Consensus 151 LmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 151 LMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred eecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 58999999999999999999998864 7899999999999987 999999999999999998876543
No 346
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8e-12 Score=71.04 Aligned_cols=60 Identities=30% Similarity=0.441 Sum_probs=55.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc--CCEEEEEeCceEeeecCh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNH 60 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~ 60 (79)
|||||.|+||...-+.+.+.+..++. +.++++|||+...+.. .|+|.+|.+|+|+..|.+
T Consensus 167 ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 167 ILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred EecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 69999999999999999999998865 9999999999988854 699999999999999998
No 347
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.32 E-value=2.4e-12 Score=72.09 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=42.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL 49 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l 49 (79)
+|||||++||+..+..+.+.+.++.+ +.|+|+++|++..+..||++++|
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 68999999999999999999987754 88999999999876569988764
No 348
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.31 E-value=2.7e-12 Score=70.65 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=48.8
Q ss_pred CcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCccccccCCEEEEEeCceEee
Q psy10474 2 FRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVE 56 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 56 (79)
=||||.+||..+...+..++-.+. + |.|.++||||+..+.+|+|.+.|.+|++..
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 399999999999998888876553 3 999999999999999999999999999865
No 349
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.31 E-value=7.3e-12 Score=69.65 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=51.0
Q ss_pred CcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeec
Q psy10474 2 FRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~ 58 (79)
=||||.+|||.....++.++++... |.|++++||+.+.+.. ..+++.+++|+++...
T Consensus 161 ADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 161 ADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred ecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 4999999999999999999988754 9999999999999976 7999999999987644
No 350
>KOG0061|consensus
Probab=99.31 E-value=1.8e-12 Score=82.41 Aligned_cols=64 Identities=30% Similarity=0.353 Sum_probs=55.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcc-ccc-cCCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLS-TVQ-NADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+||||||+||......+.+.+++++ +|+|||+.-|++. .+. ..|++++|.+|+++..|++.+..
T Consensus 193 flDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 193 FLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred EecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 4899999999999998888888775 4999999999996 333 49999999999999999887643
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=99.31 E-value=4.8e-12 Score=86.31 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=55.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcc-ccc-cCCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLS-TVQ-NADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+.+...+.+.+++.. .++|+|+++|++. .+. .+|++++|.+|+++..|+..++.
T Consensus 359 llDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 359 FMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHIL 426 (1470)
T ss_pred EEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHH
Confidence 5899999999999999999998874 3889999999974 554 49999999999999999876653
No 352
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.30 E-value=8.4e-12 Score=69.85 Aligned_cols=69 Identities=16% Similarity=0.288 Sum_probs=62.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||++++-........+++..++.+.++++|.|||.++.. +++|.+|..|.+.+.|+..++..++..
T Consensus 170 LlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~V 239 (249)
T COG4674 170 LLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPKV 239 (249)
T ss_pred EecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcce
Confidence 589999999888888999999999889999999999999976 999999999999999999888766554
No 353
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.30 E-value=9.8e-12 Score=71.17 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=51.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC---CCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK---GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~---~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~ 59 (79)
|||||+++||...+..+.+.+..+.. +.++|+|||+.+++.. .++++.++.|+++.+|.
T Consensus 194 iLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 194 ILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred EecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 69999999999999888888877642 7789999999999976 79999999999988763
No 354
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.29 E-value=7.5e-12 Score=86.12 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=57.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEe------CceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ------AGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~------~G~i~~~~~~~~~~~ 65 (79)
||||||++||+.....+.+.+..+. .+.|+|+++|+++.+..+|+++.|. +|+++..|++.++..
T Consensus 835 ILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 835 VLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 6899999999999999999988775 4889999999999885599999996 789999999887754
No 355
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.29 E-value=6.3e-12 Score=70.41 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=45.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+|||||++||+.....+...+.+...+.++|++||+++.+..+|+++.+..
T Consensus 140 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 140 VLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 589999999999999999999887668899999999988766999998864
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=99.28 E-value=6.1e-12 Score=79.82 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=46.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G 52 (79)
+|||||++||+..+..+.+.+..+..+.|+|+++|+++.+.. +|++++++++
T Consensus 235 lLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 589999999999999999999877558899999999999966 9999999763
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=1.4e-11 Score=70.42 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=58.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh-cCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~-~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
|+||.-+..|+.-+......+.+. .++.|+|+|+|++..+.+ ||+++++++|++...|.+.++.+
T Consensus 170 llDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 170 LLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred EEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 589999999999888777777776 568999999999999977 99999999999999999988754
No 358
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.26 E-value=4.9e-12 Score=71.73 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=43.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVL 49 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l 49 (79)
+|||||++||+..+..+.+.+..... +.|+|+++|++..+.. ||+++.+
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 172 LLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 58999999999999999999887653 8899999999988864 9998875
No 359
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=8.3e-12 Score=69.07 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=62.3
Q ss_pred CcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHHHH
Q psy10474 2 FRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL 73 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 73 (79)
+||||.+||...+..+..+++.+. + +.+++++||++..+.. +++.++|+.|.+++.|-...++.++..-++.
T Consensus 175 MDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~hPYTQ 249 (258)
T COG4107 175 MDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQ 249 (258)
T ss_pred ecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCCCCchHH
Confidence 799999999999999999888764 3 8899999999999865 9999999999999999888887777664443
No 360
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.25 E-value=2.9e-12 Score=70.83 Aligned_cols=65 Identities=20% Similarity=0.384 Sum_probs=58.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+||||.++||..++..+..++...+. |.++||..||++.-.+ +|+++.+++|++...|...++..
T Consensus 155 llDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 155 LLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred EecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 58999999999999999999988875 9999999999997765 99999999999999998877654
No 361
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.24 E-value=1.3e-11 Score=69.11 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=42.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVL 49 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l 49 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|+++|+...+.. +++++.+
T Consensus 148 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 148 ILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 6899999999999999999987764 48899999999887755 8988876
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.23 E-value=1.5e-11 Score=77.22 Aligned_cols=63 Identities=29% Similarity=0.353 Sum_probs=53.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~ 65 (79)
+|||||++||..+...+...+... .+ |+|+||||..++.. |++++.+++|++. +.|+++....
T Consensus 176 LLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 176 LLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred EEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHH
Confidence 589999999999999998888754 44 99999999999976 9999999999875 4577777653
No 363
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.23 E-value=1.8e-11 Score=68.91 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=44.6
Q ss_pred CCcccccCCCHHHHH-HHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEK-LVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~-~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+||||+++||+.... .+.+.+.+... +.++|+++|++.....+|+++.+.+
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 589999999999988 99888887754 7899999999987767999999865
No 364
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.23 E-value=2e-11 Score=68.51 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=42.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVL 49 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l 49 (79)
+|||||++||+.....+.+.+.+.. .+.|+|++||++.++.. ..|++++
T Consensus 152 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 152 ILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 5899999999999999999988764 47899999999999966 5666665
No 365
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.21 E-value=2.2e-11 Score=70.17 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=44.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+|||||++||+.....+.+.+.+... +.++|++||+...+..+|+++++..
T Consensus 182 llDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 182 VLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 58999999999999999998888765 8899999999877767999988864
No 366
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.19 E-value=3.6e-11 Score=67.65 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=43.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+|||||++||+.....+.+.+.+.. .+.|+|++||++..+.. ++++.+..
T Consensus 150 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 150 ILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 5899999999999999999988753 48899999999998876 88877743
No 367
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.19 E-value=3.5e-11 Score=77.22 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=43.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+|||||++||+.....+.+.+... ++|+|+++|+++.+..+|++++++.
T Consensus 605 lLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 605 ILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 689999999999999998888663 8899999999998877999999964
No 368
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.18 E-value=5.3e-11 Score=67.34 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=44.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+|||||++||+.....+.+.+.++..+.++|+++|+.+....||+++++..
T Consensus 154 ilDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 154 VMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 589999999999999999999988778899999999765566999999864
No 369
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.18 E-value=3.4e-11 Score=66.17 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=48.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i 54 (79)
+|||+||+||+.+++.+.+++..+. . ...++.|||+.+...+ +++++.+..|++
T Consensus 156 LLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 156 LLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred EecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 5899999999999999999988775 3 7799999999998755 999999999876
No 370
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.17 E-value=6.5e-11 Score=68.31 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=43.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
+|||||++||+.....+.+.+....++.++|++||+.+....||+++-+.
T Consensus 193 llDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 193 ILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 58999999999999999999988767889999999966666799998765
No 371
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.15 E-value=8.9e-11 Score=66.58 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=50.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh-cC-CCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA-CK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~-~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~ 59 (79)
+|||=|++|||.+...+++.-... .+ +.|.+||||+++.+.. .+|.++|++|+|+..-.
T Consensus 171 LLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 171 LLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred EecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 589999999999998888776654 33 7899999999998865 99999999999987543
No 372
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.13 E-value=6.7e-11 Score=65.70 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=34.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLST 39 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~ 39 (79)
+|||||++||+..+..+.+.+.+..+ +.|+|++||+++.
T Consensus 150 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 150 LLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 68999999999999999999887754 8899999999865
No 373
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.13 E-value=1.4e-10 Score=72.95 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=52.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeee-cChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEM-GNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~-~~~~~~~~ 65 (79)
||||||++||..+...+...+... ..|+|+|+||..++.. +++++.+.+ .+... |.+.+...
T Consensus 462 iLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 462 LLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred EEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 699999999999999999888765 6799999999999977 999999987 55444 77766543
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.12 E-value=1.4e-10 Score=66.51 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=41.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
+|||||++||+.....+.+.+.++..+.++|+++|..+....||+++++.
T Consensus 185 llDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 185 LFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 58999999999999999999888766777887888765545599999985
No 375
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=9.1e-11 Score=68.60 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=46.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~ 53 (79)
+||||+++||+.....+.+.+.....+.++|+++|++.....+|+++.+.+|.
T Consensus 197 llDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 197 IFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 58999999999999999998888767889999999998666699999998763
No 376
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.12 E-value=1.6e-10 Score=65.42 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=42.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--C-CEEEEEccCcccccc-CC--EEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--G-RTVLMIAHRLSTVQN-AD--LIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~-~tvi~vtH~~~~~~~-~d--~v~~l~~G~ 53 (79)
+|||||++||+.....+.+.+....+ + .++|++||++..... ++ +++++.+|+
T Consensus 153 llDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 153 VVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 58999999999999999888877643 3 479999999866643 54 778888875
No 377
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.12 E-value=1.3e-10 Score=64.94 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=38.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVV 48 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~ 48 (79)
+|||||++||+.....+.+.+..+. .+.|+|+++|+...+ .|++++.
T Consensus 150 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 150 ILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 6899999999999999999998764 488999999998544 3455543
No 378
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.11 E-value=1.6e-10 Score=64.80 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=44.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC----CCEEEEEccCccccccCCEEEEEeCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK----GRTVLMIAHRLSTVQNADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~----~~tvi~vtH~~~~~~~~d~v~~l~~G 52 (79)
+|||||++||+.....+.+.+..... +.++++++|+++.+..+|+|.+|+.+
T Consensus 136 llDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~ 191 (198)
T cd03276 136 CLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMK 191 (198)
T ss_pred EecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEec
Confidence 68999999999999999888877532 35889999999999888999999864
No 379
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.11 E-value=1.1e-10 Score=73.85 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=48.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~ 53 (79)
|||||+++||+.....+...+.....+.++|++||++..+..+|+++.+.+|.
T Consensus 467 ilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~~ 519 (563)
T TIGR00634 467 IFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKEG 519 (563)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence 68999999999999999999988777899999999998887799999998754
No 380
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.10 E-value=1.5e-10 Score=64.63 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=39.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh-cCCCEEEEEccCccccccCCEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLI 46 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~-~~~~tvi~vtH~~~~~~~~d~v 46 (79)
+|||||++||+..+..+.+.+... ..+.|+|+++|++..+..+|.+
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 589999999999999999888754 3589999999999988776654
No 381
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.08 E-value=1.6e-10 Score=64.69 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=39.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADL 45 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~ 45 (79)
+|||||++||+..+..+.+.+.... .+.|+|+++|+...+..+|-
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADY 195 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccch
Confidence 6899999999999999999998764 48899999999988866653
No 382
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.06 E-value=2.1e-10 Score=71.93 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=34.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRL 37 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~ 37 (79)
|||||||+||+.++..+.+.+....+++|+|+|+|++
T Consensus 493 iLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 493 LLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 6899999999999999999998887899999999984
No 383
>KOG0065|consensus
Probab=99.05 E-value=9.7e-11 Score=78.76 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=52.2
Q ss_pred CcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccc--ccCCEEEEEeC-ceEeeecChhH
Q psy10474 2 FRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTV--QNADLIVVLQA-GQIVEMGNHKS 62 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~--~~~d~v~~l~~-G~i~~~~~~~~ 62 (79)
|||||||||.++...+...++.+.. |+||+..-|+++.- +..|+++.|++ |+.++.|+..+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 8999999999999999999988765 99999999999744 55999999976 66788777554
No 384
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.05 E-value=4.3e-10 Score=62.20 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=44.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+||||+++||+.....+.+.+.+... +.++|+++|+++.+..+|+++.+..
T Consensus 121 ilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 121 VLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 58999999999999988888887654 6899999999987777999998865
No 385
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.03 E-value=1.5e-09 Score=70.69 Aligned_cols=68 Identities=28% Similarity=0.408 Sum_probs=58.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKG 68 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~~ 68 (79)
||||||++|=+..-..+...+.++. .|.|+|+|.|.++.+..+|-|+=+ ..|.|++.|.|.++.+.+.
T Consensus 848 iLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~ 922 (935)
T COG0178 848 ILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKA 922 (935)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCcc
Confidence 6999999999998888888777765 599999999999999999999987 4688999999999876443
No 386
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.01 E-value=2.8e-10 Score=63.78 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=46.2
Q ss_pred CCcccccCCCHHHHHHHH-HHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSALDNESEKLVQ-AALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~-~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~ 58 (79)
+||||++++|+.....+. ..++.+. .+.++|++||+......++++..+.+|++...+
T Consensus 113 llDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 113 LLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 589999999999887764 4566554 388999999986554559999999999987653
No 387
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.00 E-value=5.8e-10 Score=62.70 Aligned_cols=57 Identities=30% Similarity=0.375 Sum_probs=48.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh-cC-CCEEEEEccCcccccc-CCEEEEEeC--ceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA-CK-GRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~-~~-~~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~ 57 (79)
+||||.++||.-++..++.++-.. .. ++.+++|||+.+++.. +++.++|+- |+++..
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~ 216 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEe
Confidence 589999999999999999887654 33 9999999999998865 999999974 677653
No 388
>PRK10869 recombination and repair protein; Provisional
Probab=98.97 E-value=1.1e-09 Score=69.24 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=47.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G 52 (79)
|||||+++||+.....+...+.....+.++|+|||++..+..+|+++.+..+
T Consensus 457 i~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 457 IFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 6899999999999999999999887789999999999887779999999764
No 389
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.93 E-value=2e-09 Score=61.36 Aligned_cols=71 Identities=24% Similarity=0.324 Sum_probs=60.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
|-||||.++++.++.++..++.++. .+.|+++++||+..+.. ||++-++.-|.-++.++..++...+-+-+
T Consensus 181 IADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPY 254 (330)
T COG4170 181 IADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPY 254 (330)
T ss_pred eccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCch
Confidence 3599999999999999999988775 38899999999999976 99999999999888888888776555533
No 390
>KOG0062|consensus
Probab=98.92 E-value=2e-09 Score=67.15 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=47.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~ 56 (79)
||||||+.||-..-..+...+... +..||+|+|+.+++.. |..+|+.++|++.-
T Consensus 505 VLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 505 VLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred EecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 699999999998888777777654 6689999999999976 99999999999864
No 391
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.92 E-value=1.5e-09 Score=59.11 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=43.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+||||++++|+.....+...+.+.. ++.++|++||+++....+|+++.|..
T Consensus 104 llDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 104 ILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 5899999999999888877776653 36899999999998877899998854
No 392
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.91 E-value=4.9e-09 Score=68.35 Aligned_cols=69 Identities=25% Similarity=0.385 Sum_probs=59.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~~~ 69 (79)
|||||+-+|=++....+.+.+..++. |.|+|+|.||.+.+..+|.++=+ ..|.|+..|++.++..++..
T Consensus 506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~S 581 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPES 581 (935)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcc
Confidence 69999999999977777777777765 99999999999999999999987 46889999999998876543
No 393
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.87 E-value=1.9e-09 Score=60.48 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=46.2
Q ss_pred CCcccccCCCHHHHHHH-HHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecCh
Q psy10474 1 MFRLFGSALDNESEKLV-QAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNH 60 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~-~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~ 60 (79)
+||||++++|+.....+ ..+++... .+.++|++||+.+....++++..+..|++...+..
T Consensus 113 llDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 113 LIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecC
Confidence 58999999999876655 44455443 38899999999887777888888888888766543
No 394
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.85 E-value=4.8e-09 Score=70.33 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=45.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G 52 (79)
+|||||++||+.....+...+..+. .|++|++|||++..... ++++.+++.|
T Consensus 983 ~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 983 FIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECC
Confidence 5899999999999999988888764 48899999999998876 9999999754
No 395
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.82 E-value=6.1e-09 Score=65.75 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=44.1
Q ss_pred CCcccc-cCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFG-SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~-s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+||||+ ++||+.....+...+... .+.++|++||++.....+++++++.+
T Consensus 501 ilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~ 551 (562)
T PHA02562 501 ILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEK 551 (562)
T ss_pred EEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEE
Confidence 589998 789999999999988887 78899999999777667999999986
No 396
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.78 E-value=2e-08 Score=56.29 Aligned_cols=69 Identities=17% Similarity=0.312 Sum_probs=59.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
|-||+-.+||...+-++.+++-.+. -|.+-|+|+.++..+.. .|+|++|+.|++++.|.+.+++..+..
T Consensus 172 IaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~ 243 (267)
T COG4167 172 IADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLH 243 (267)
T ss_pred EehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCcc
Confidence 4599999999999988888776654 38899999999999987 999999999999999999998766544
No 397
>PRK03918 chromosome segregation protein; Provisional
Probab=98.76 E-value=1.2e-08 Score=67.19 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=43.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
||||||++||+.....+...+..... +.++|++||++.....||+++.|..
T Consensus 817 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l~~ 868 (880)
T PRK03918 817 ILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSL 868 (880)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEEEe
Confidence 68999999999999888888876543 6799999999876656999999973
No 398
>KOG0927|consensus
Probab=98.73 E-value=2.2e-08 Score=63.03 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=52.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCce-EeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQ-IVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~-i~~~~~~~~~~~ 65 (79)
+|||||.+||..+...+.+.+...-.. ++++++|.-+++.. |..|+.+.+++ +.+.|++.....
T Consensus 244 LLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~ 309 (614)
T KOG0927|consen 244 LLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVK 309 (614)
T ss_pred EecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhh
Confidence 589999999999999888888665323 88999999999977 99999999999 456677766543
No 399
>PRK02224 chromosome segregation protein; Provisional
Probab=98.64 E-value=5.6e-08 Score=64.25 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=44.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-C-CEEEEEccCccccccCCEEEEEeCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-G-RTVLMIAHRLSTVQNADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~-~tvi~vtH~~~~~~~~d~v~~l~~G 52 (79)
||||||+++|+.....+..++..... + .++|++||++..+..+|+++.+...
T Consensus 816 ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~~ 869 (880)
T PRK02224 816 ILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVEKD 869 (880)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEeecC
Confidence 68999999999999888888877653 4 4799999999888779999999643
No 400
>PRK01156 chromosome segregation protein; Provisional
Probab=98.64 E-value=4.7e-08 Score=64.77 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=41.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C--C-CEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K--G-RTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~--~-~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
+|||||++||+.....+..++.... . + .++|++||++.....||+++.+.
T Consensus 830 ilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~~~ 883 (895)
T PRK01156 830 IMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYEVK 883 (895)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEEEE
Confidence 5899999999999888888776432 2 2 48999999999776699999987
No 401
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.64 E-value=2.9e-08 Score=66.50 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=43.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
|||||+++||+.....+..++.....+.++|+|||++..+..||+++...
T Consensus 1116 ~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1116 ILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred EecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence 69999999999999999999988766788999999999876689887553
No 402
>KOG0927|consensus
Probab=98.62 E-value=1.3e-08 Score=63.96 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=50.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEee-ecChh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE-MGNHK 61 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~~~~~ 61 (79)
||||||++||......+.+.+..+ ..++|+++|+...+.+ +++++.+.+|.+.. .|.+.
T Consensus 532 lLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 532 LLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred EecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 699999999999999999888776 5689999999999987 99999999988754 45543
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.57 E-value=3.9e-08 Score=56.11 Aligned_cols=57 Identities=11% Similarity=0.015 Sum_probs=39.9
Q ss_pred CCccc---ccCCCHHHHHHHH-HHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeec
Q psy10474 1 MFRLF---GSALDNESEKLVQ-AALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~---~s~lD~~~~~~~~-~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~ 58 (79)
+|||| |+++|+....... +.+.+ ..+.++|++||..+....++++..+.+|++....
T Consensus 114 LLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 114 IIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred EEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEE
Confidence 58999 9999998654322 22322 2478999999964443458999989889886544
No 404
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=4.4e-08 Score=54.31 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=43.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~ 51 (79)
+|||||++||..++..+.+++.+.. .|..+|=|.||-+.-.. +||.+-+..
T Consensus 175 LLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 175 LLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred EecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 5899999999999999999998775 48899999999766665 898887754
No 405
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.53 E-value=1.5e-07 Score=63.27 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=44.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+||||+++||+.....+..++.....+..+|++||+...+..||+++.+..
T Consensus 1101 ~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1101 AFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred EecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 589999999999999999999887667889999999987767999987653
No 406
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=1.9e-07 Score=54.65 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=39.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-C---CEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-A---DLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~---d~v~~l~~G~i 54 (79)
+|||||++||+.....+...+.... .+++++|+...+.. + .+++.+++|++
T Consensus 215 llDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 215 LLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccCccEEEEeCcEE
Confidence 5899999999999998888886542 45666666665544 5 67899999875
No 407
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.51 E-value=2e-07 Score=50.88 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=40.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHH-hc-CCCEEEEEccCccccccCCEEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALES-AC-KGRTVLMIAHRLSTVQNADLIVVL 49 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~-~~-~~~tvi~vtH~~~~~~~~d~v~~l 49 (79)
+||||+|.||...+..+.+.+-. .+ .+..+|+|||+...++...+|+-+
T Consensus 157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 58999999999998888776543 33 489999999999999876776655
No 408
>KOG0062|consensus
Probab=98.49 E-value=2.1e-08 Score=62.80 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=50.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceE-eeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQI-VEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i-~~~~~~~~~~~ 65 (79)
+|||||+.||..+-..+..-+..+ +.|+|+|+||..++.. |.-|+.+.+-++ .+.|+++.+..
T Consensus 221 LLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 221 LLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred eecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 589999999999988888888765 4899999999999976 888888876555 34577766543
No 409
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.49 E-value=1.3e-07 Score=60.30 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=42.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
+|||+||+||+.++..+.+.+++...+.|+|.|.|+.......++.+.+.
T Consensus 538 ~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 538 FLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred EEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 58999999999999999999999889999999999987775545544443
No 410
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.46 E-value=1.8e-07 Score=52.62 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=31.7
Q ss_pred CCcccccCCCHHHHHHH-HHHHHHhc-CCCEEEEEccCccccc
Q psy10474 1 MFRLFGSALDNESEKLV-QAALESAC-KGRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~-~~~~~~~~-~~~tvi~vtH~~~~~~ 41 (79)
+||||++++|+.....+ ...+.... .+.++|++||+++.+.
T Consensus 110 llDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~ 152 (199)
T cd03283 110 LLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELAD 152 (199)
T ss_pred EEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH
Confidence 58999999999977654 44555543 4789999999998763
No 411
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.45 E-value=4.3e-07 Score=51.46 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=40.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
||||+.++||......+..++.....+..+|++||+...+..+++.+.+.
T Consensus 163 ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 163 ILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp EEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999998877889999999999888888877653
No 412
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.45 E-value=2.8e-07 Score=57.55 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=45.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~ 50 (79)
+||||+|-||..++......++++.+ ++++|+|.||+..+.. +|-|.++.
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 58999999999999999999999877 8999999999999966 88888775
No 413
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.43 E-value=3.5e-07 Score=57.03 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=52.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh-cCCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS 62 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~-~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~ 62 (79)
|...||.+||.-....+.+.+.+. ..|+.+++++-+++++.. +|++.+|.+|++....++.+
T Consensus 426 I~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 426 IAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred EEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 356899999999888887766655 459999999999999966 99999999999987766554
No 414
>KOG2355|consensus
Probab=98.43 E-value=5.9e-07 Score=51.28 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=52.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHK 61 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~ 61 (79)
+|||.|--||.-.+..+.+++...++ ++|+++.||-.+-+.. ..+++.+.+|+++..-++.
T Consensus 170 LLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 170 LLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred EeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 58999999999999999888877654 8999999999998865 9999999999998754443
No 415
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=8.8e-07 Score=49.59 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=35.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~ 41 (79)
|||||+++||......+..++.... .|..||..||++-.+.
T Consensus 153 iLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 153 ILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred eecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 6999999999999999999887765 4888999999876553
No 416
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.41 E-value=1.2e-06 Score=49.29 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=45.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i 54 (79)
+||||-++|.|..+..+...+..+.. |..+|++||.+=.+.. ...++.++.+.+
T Consensus 151 iLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 151 ILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred EecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 69999999999999988888888764 8899999998776654 678888888764
No 417
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.40 E-value=4.1e-07 Score=61.43 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=42.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~ 51 (79)
+|||||++||+.....+...+..+. .|++|++|||......+ ..++.+-..
T Consensus 980 ~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246 980 FLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKI 1032 (1047)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccceEEEEEC
Confidence 5899999999999999999888775 48999999997777766 677777664
No 418
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.39 E-value=5.2e-07 Score=60.16 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=44.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+|||||..||+.....+...+..... +.+|++|||+......++.++....
T Consensus 846 ~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~i~V~k 897 (908)
T COG0419 846 FLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRIRVKK 897 (908)
T ss_pred EeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeEEEEEe
Confidence 58999999999999999998887765 7999999999888888888887764
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.33 E-value=4.6e-07 Score=50.36 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=32.0
Q ss_pred CCcccccCCCHHHHHHH-HHHHHHhc--CCCEEEEEccCccccccCC
Q psy10474 1 MFRLFGSALDNESEKLV-QAALESAC--KGRTVLMIAHRLSTVQNAD 44 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~-~~~~~~~~--~~~tvi~vtH~~~~~~~~d 44 (79)
+||||++++|+.....+ ..+++... .+.++|++||+++....++
T Consensus 83 llDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 83 LLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD 129 (185)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence 58999999999965554 55555543 2789999999996444354
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.27 E-value=3.9e-07 Score=51.86 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=35.0
Q ss_pred CCccc---ccCCCHHHH-HHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeee
Q psy10474 1 MFRLF---GSALDNESE-KLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 57 (79)
Q Consensus 1 ~~de~---~s~lD~~~~-~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 57 (79)
+|||| |+++|+... ..+.+.+.. ..+.++|++||+.+....++++..+.+|++...
T Consensus 114 llDEp~~gt~~lD~~~~~~~il~~l~~-~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~ 173 (216)
T cd03284 114 LLDEIGRGTSTYDGLSIAWAIVEYLHE-KIGAKTLFATHYHELTELEGKLPRVKNFHVAVK 173 (216)
T ss_pred EEecCCCCCChHHHHHHHHHHHHHHHh-ccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEE
Confidence 58999 888887542 222222221 137899999999755444666655666665543
No 421
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=1.2e-06 Score=60.28 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=33.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc------CCCEEEEEccCccccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC------KGRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~------~~~tvi~vtH~~~~~~ 41 (79)
+|||||++||+.....+...+..+. .+.++|++||++.++.
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 5899999999999887777665541 3679999999998774
No 422
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.22 E-value=1.5e-06 Score=57.54 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=48.3
Q ss_pred CCcccccCC-CHHHHHHHHHHHHHhcC-CCEEEEEccCccccc----------cCCEEEEEeCceEeeec
Q psy10474 1 MFRLFGSAL-DNESEKLVQAALESACK-GRTVLMIAHRLSTVQ----------NADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~~s~l-D~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~----------~~d~v~~l~~G~i~~~~ 58 (79)
++|||+.+| |+.....+.+.+...++ +.+++++||++..+. .|+.++++.+|++...+
T Consensus 657 llDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~ 726 (818)
T PRK13830 657 ILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPG 726 (818)
T ss_pred EEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccc
Confidence 589999999 68888888888887654 889999999998763 48999999999875543
No 423
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.17 E-value=5.3e-07 Score=55.60 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=49.8
Q ss_pred CCcccccCCCHHHHHHHHHHHH-Hhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALE-SAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~-~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~ 59 (79)
||||=.+-.||.-++.+...+- .+. .|+|++.||||-.++..+||.+.+++|++.+..+
T Consensus 471 v~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 471 VLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred EeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeeccc
Confidence 6899999999998887766544 333 3999999999999998899999999999987543
No 424
>PRK00064 recF recombination protein F; Reviewed
Probab=98.17 E-value=4.5e-06 Score=50.81 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=41.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc---CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN---ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~---~d~v~~l~~G~i 54 (79)
+||||++.||+..+..+...+... +..+++++|+...+.. ..+++.+++|++
T Consensus 305 LlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 305 LLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENAKIFHVEQGKI 359 (361)
T ss_pred EEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccCcEEEEeCCEE
Confidence 589999999999998888877543 4578889998876533 357889999986
No 425
>KOG0066|consensus
Probab=98.14 E-value=5.7e-06 Score=52.04 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=43.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 55 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~ 55 (79)
||||||.+||...-..+.+.+... ...+|+|+|+-..+.. ....|++.+-.|-
T Consensus 727 ILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~ 780 (807)
T KOG0066|consen 727 ILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGID 780 (807)
T ss_pred EecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChh
Confidence 699999999999888888888765 5689999999998865 6677888775553
No 426
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.11 E-value=5.8e-06 Score=51.87 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=44.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~ 50 (79)
+||||++.||..++..+...+++.. .++|.++|-||.-.+.. .|+++++.
T Consensus 478 llDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 5899999999999998888888764 38899999999998876 89999985
No 427
>KOG0066|consensus
Probab=98.11 E-value=3.7e-07 Score=57.14 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=49.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEee-ecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE-MGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~-~~~~~~~ 63 (79)
+|||||.+||-.....+-+.++.| .+|+++|+|+-.++.. |..|+.+++-++.+ .|+|.-+
T Consensus 435 MLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~F 497 (807)
T KOG0066|consen 435 MLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLF 497 (807)
T ss_pred eecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHH
Confidence 589999999988877777777766 6699999999999966 99999999877743 4666543
No 428
>KOG0065|consensus
Probab=98.06 E-value=1.1e-05 Score=55.59 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=53.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcc-cc-ccCCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLS-TV-QNADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
.+||+|.+||..+..++.+.++.... +.|.++.-+++. .. ...|.|++|.+|.++.+|+..+..
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 48999999999999999999988754 778888777774 34 459999999999999999987754
No 429
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.93 E-value=1.6e-05 Score=43.78 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=37.5
Q ss_pred CCcccccCCC---HHHHHHHHHHHHHhc-CCCEEEEEccCccc---------ccc-CCEEEEEe
Q psy10474 1 MFRLFGSALD---NESEKLVQAALESAC-KGRTVLMIAHRLST---------VQN-ADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD---~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~---------~~~-~d~v~~l~ 50 (79)
|+|||++.+| ......+..++.... .+.|+|+++|.... +.. +|.++.++
T Consensus 100 viD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 100 VIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred EEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 5899999999 666666666666554 48899999998764 444 78888776
No 430
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.93 E-value=1e-05 Score=45.76 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=31.3
Q ss_pred CCcccccCCCHHHHHH-HHHHHHHhc-CCCEEEEEccCcccccc
Q psy10474 1 MFRLFGSALDNESEKL-VQAALESAC-KGRTVLMIAHRLSTVQN 42 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~-~~~~~~~~~-~~~tvi~vtH~~~~~~~ 42 (79)
+||||++++|+..... ....++.+. .+.++|++||+.+.+..
T Consensus 113 llDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 113 LIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred EeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 5899999999976443 344555543 38899999999987743
No 431
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.86 E-value=2.5e-05 Score=44.05 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=32.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~ 40 (79)
++|||.++|.|..+..+.+.+..... +..+|++||.+..+
T Consensus 262 liDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 262 LIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp EEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred EecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 48999999999988888888877665 78999999987654
No 432
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.76 E-value=3e-05 Score=44.10 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=30.3
Q ss_pred CCcccccCCCHHH-HHHHHHHHHHhcC----CCEEEEEccCcccccc
Q psy10474 1 MFRLFGSALDNES-EKLVQAALESACK----GRTVLMIAHRLSTVQN 42 (79)
Q Consensus 1 ~~de~~s~lD~~~-~~~~~~~~~~~~~----~~tvi~vtH~~~~~~~ 42 (79)
+||||++++|+.. ...+...++...+ +.++|++||+.+.+..
T Consensus 113 llDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 113 LIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred EeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 5899999999975 4444556655532 2489999999987643
No 433
>KOG0060|consensus
Probab=97.68 E-value=6.2e-05 Score=48.40 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=43.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+|||.|||+|...+..+...+++. +.|.|-|.|+.+....-|-++.|+.
T Consensus 593 iLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 593 ILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred EeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 699999999999999998888765 8899999999888877888888865
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.65 E-value=4.3e-05 Score=50.72 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCcccccCCCHHHHHHHH-HHHHHhc-CCCEEEEEccCcccccc
Q psy10474 1 MFRLFGSALDNESEKLVQ-AALESAC-KGRTVLMIAHRLSTVQN 42 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~-~~~~~~~-~~~tvi~vtH~~~~~~~ 42 (79)
+||||++++|+.....+. .++.... .+.++|++||+.+....
T Consensus 412 LlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 412 LFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 589999999999776654 4555543 48899999999876644
No 435
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.63 E-value=0.00039 Score=43.59 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=47.6
Q ss_pred cccCCCHHHHHHHHHHHHHhc---CCC-----EEEEEccCccccccCCEEEEEeCceEeeecChhH
Q psy10474 5 FGSALDNESEKLVQAALESAC---KGR-----TVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKS 62 (79)
Q Consensus 5 ~~s~lD~~~~~~~~~~~~~~~---~~~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~ 62 (79)
.++++|+.....+.+++++.. .|. |+++.+|+++. ..+|++..+.+|+++..+...+
T Consensus 276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 478999999999999988775 364 89999999985 4599999999999998776544
No 436
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.53 E-value=9.8e-05 Score=49.03 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=31.7
Q ss_pred CCcccccCCCHHHHHHH-HHHHHHhc-CCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLV-QAALESAC-KGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~-~~~~~~~~-~~~tvi~vtH~~~~~ 40 (79)
+||||++++|+.....+ ..++..+. .+.++|++||+.+..
T Consensus 407 LlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 407 LFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 58999999999988766 45666554 488999999998643
No 437
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.51 E-value=8.3e-05 Score=42.58 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=31.1
Q ss_pred CCcccccCCCHHHHHHHHHH-HHHhcC--CCEEEEEccCccccc
Q psy10474 1 MFRLFGSALDNESEKLVQAA-LESACK--GRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~-~~~~~~--~~tvi~vtH~~~~~~ 41 (79)
+||||+++.++.....+... ++.+.. +.++|++||+++...
T Consensus 114 LlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~ 157 (218)
T cd03286 114 ILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCD 157 (218)
T ss_pred EEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 58999999999876555444 554433 789999999988764
No 438
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=0.00014 Score=44.51 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=32.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~ 41 (79)
+||||++.||+..+..+.+.+... +.++++++|++..+.
T Consensus 307 LLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 307 LLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred EEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 589999999999998888888643 668999999886653
No 439
>PF13175 AAA_15: AAA ATPase domain
Probab=97.45 E-value=0.00021 Score=43.63 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=34.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLST 39 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~ 39 (79)
++|||..+|-|..+..+...+..... +..+|++||.+..
T Consensus 374 lidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 374 LIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 58999999999999999988887766 8899999998753
No 440
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.45 E-value=0.00017 Score=42.56 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=35.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccc--c-----------cc-CCEEEEEeCceEeeecChh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLST--V-----------QN-ADLIVVLQAGQIVEMGNHK 61 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~--~-----------~~-~d~v~~l~~G~i~~~~~~~ 61 (79)
++|||++ ...+..++.....|.++|+++|+... + .. ++++++|++|+ ..|...
T Consensus 199 llDE~~~------~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~ 265 (270)
T TIGR02858 199 VVDEIGR------EEDVEALLEALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVE 265 (270)
T ss_pred EEeCCCc------HHHHHHHHHHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCcee
Confidence 5899864 23344444444568999999997655 3 23 79999998765 334443
No 441
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.00028 Score=45.28 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=45.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
||||..+|+-......+.+.+..+....-|+.|||.|..+..+|.-+.+..
T Consensus 458 IFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V~K 508 (557)
T COG0497 458 IFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMADTHFLVEK 508 (557)
T ss_pred EEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhcceEEEEE
Confidence 699999999999999999999999899999999999999988777776653
No 442
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0002 Score=43.29 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=36.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~ 41 (79)
++|||+.+||+.....+.+.+++...+.++|++||+++.+.
T Consensus 117 ~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 117 ILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVL 157 (325)
T ss_pred EEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhCh
Confidence 47999999999999999999998766888999999987664
No 443
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.37 E-value=0.00046 Score=43.43 Aligned_cols=55 Identities=18% Similarity=0.362 Sum_probs=45.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccc--cCCEEEEEeCceEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQ--NADLIVVLQAGQIV 55 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~--~~d~v~~l~~G~i~ 55 (79)
+.||+.|.||+.+...+..-+..++ .+.|++.+||+++... +.|.++...-|+..
T Consensus 530 ~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred EhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 4699999999999988888887775 4999999999999883 37998888777643
No 444
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.29 E-value=0.00022 Score=47.85 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=35.0
Q ss_pred CCcccccCC-CHHHHHHHHHHHHHhcC-CCEEEEEccCccccc
Q psy10474 1 MFRLFGSAL-DNESEKLVQAALESACK-GRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~l-D~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~ 41 (79)
++|||+.+| |+.....+.+.+...++ +.+++++||++..+.
T Consensus 692 llDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 692 ILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA 734 (852)
T ss_pred EEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 589999999 78888888888877754 889999999998774
No 445
>KOG0063|consensus
Probab=97.29 E-value=0.0005 Score=43.37 Aligned_cols=50 Identities=26% Similarity=0.357 Sum_probs=42.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~ 50 (79)
+||||.|.||..++......++.+.. ..=+|+|.|+++.+.. .|-++.+.
T Consensus 236 MFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 236 MFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred EecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 58999999999999888888887754 8899999999998865 77777775
No 446
>PRK13695 putative NTPase; Provisional
Probab=97.27 E-value=0.00015 Score=39.80 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=37.6
Q ss_pred CCccc--ccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474 1 MFRLF--GSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~--~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~ 59 (79)
++||+ +..+++.....+..++ ..+.++|+++|.......++++..+.+|++....+
T Consensus 101 llDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~ 158 (174)
T PRK13695 101 IIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTP 158 (174)
T ss_pred EEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcc
Confidence 58995 3344444334444333 34789999999854444589999999999877644
No 447
>PRK14079 recF recombination protein F; Provisional
Probab=97.24 E-value=0.00079 Score=41.04 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=35.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIV 55 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 55 (79)
+||||++.||...+..+...+... .. + ++|. .+....+++++.+.+|+..
T Consensus 295 LlDd~~seLD~~~~~~l~~~l~~~--~q-~-~it~-t~~~~~~~~~~~~~~~~~~ 344 (349)
T PRK14079 295 LVDDFTAELDPRRRGALLALAASL--PQ-A-IVAG-TEAPPGAALTLRIEAGVFT 344 (349)
T ss_pred EEcccchhcCHHHHHHHHHHHhcC--Cc-E-EEEc-CCCCCCCceEEEEeccEec
Confidence 589999999999988887777533 12 2 3331 2334458999999988764
No 448
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.23 E-value=0.00042 Score=39.83 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=28.3
Q ss_pred CCcccccCCCHHHHHH-HHHHHHHhc--CCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKL-VQAALESAC--KGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~-~~~~~~~~~--~~~tvi~vtH~~~~~ 40 (79)
+||||.++.++..... ....++.+. .+.++|++||+.+..
T Consensus 115 llDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 115 ILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG 157 (222)
T ss_pred EEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence 5899988888765443 344555443 377999999998865
No 449
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.16 E-value=0.00051 Score=48.18 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=31.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLS 38 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~ 38 (79)
+||||++++|+.....+..++... +.++|++++.+.
T Consensus 1282 lLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1282 LLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred EEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 589999999999999999988876 778899998763
No 450
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.10 E-value=0.00032 Score=48.44 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=41.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIV 47 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~ 47 (79)
||||.-++||..+...+..++.....+.-.|+|||.......+|+.+
T Consensus 1093 vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~ad~l~ 1139 (1163)
T COG1196 1093 VLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADRLV 1139 (1163)
T ss_pred eeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHHHHHe
Confidence 69999999999999999999999988889999999998876666554
No 451
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.02 E-value=0.00056 Score=45.74 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=33.2
Q ss_pred CCcccccCCC-HHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474 1 MFRLFGSALD-NESEKLVQAALESACK-GRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD-~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~ 40 (79)
++|||+..|| +.....+.+.+...++ +.+++++||++..+
T Consensus 640 llDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 681 (811)
T PRK13873 640 ILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADI 681 (811)
T ss_pred EEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 5899999999 6678888888877654 88999999998755
No 452
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.01 E-value=0.0012 Score=38.13 Aligned_cols=38 Identities=5% Similarity=0.137 Sum_probs=25.8
Q ss_pred CCcccccCC----CHHHHHHHHHHHHHhcC-CCEEEEEccCccc
Q psy10474 1 MFRLFGSAL----DNESEKLVQAALESACK-GRTVLMIAHRLST 39 (79)
Q Consensus 1 ~~de~~s~l----D~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~ 39 (79)
|+||||+.+ |+.....+...+..+.+ +.|+ +++|+...
T Consensus 122 VIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~ 164 (230)
T PRK08533 122 IIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKE 164 (230)
T ss_pred EEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccc
Confidence 589999999 76666667777766544 6655 55566543
No 453
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.56 E-value=0.0021 Score=43.05 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=33.5
Q ss_pred CCcccccCCC-HHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474 1 MFRLFGSALD-NESEKLVQAALESACK-GRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD-~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~ 40 (79)
++|||+..|| +.....+.+.+...++ +..++++||.++.+
T Consensus 647 ~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 647 VLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred EEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5899999999 7778888888877755 88999999998664
No 454
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.45 E-value=0.0035 Score=35.44 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.4
Q ss_pred CCcccc-----cCCCHHHHHHHHHHHHHhc
Q psy10474 1 MFRLFG-----SALDNESEKLVQAALESAC 25 (79)
Q Consensus 1 ~~de~~-----s~lD~~~~~~~~~~~~~~~ 25 (79)
++|||| ++||+.....+.+.+..++
T Consensus 175 ~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 175 FVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred ecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 589999 9999999999999988763
No 455
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.38 E-value=0.014 Score=30.96 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=27.6
Q ss_pred CCcccccCC----------CHHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474 1 MFRLFGSAL----------DNESEKLVQAALESACK-GRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~l----------D~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~ 40 (79)
|+||++..+ +......+..++....+ +.++|+++|.....
T Consensus 90 viDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 90 ILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred EEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 578888554 33445666666665543 88999999987644
No 456
>PF13166 AAA_13: AAA domain
Probab=96.22 E-value=0.0074 Score=39.80 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh---cCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA---CKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~---~~~~tvi~vtH~~~~~ 40 (79)
|+|-|-|+||......+...+... ...+.+|+-||++.++
T Consensus 532 ViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~ 574 (712)
T PF13166_consen 532 VIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFF 574 (712)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHH
Confidence 689999999999999888888877 4578999999999765
No 457
>KOG0064|consensus
Probab=96.13 E-value=0.0054 Score=39.84 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=33.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN 42 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~ 42 (79)
+|||.||++.+.....+.+..... |.+.|-|+|++.....
T Consensus 635 lLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 635 LLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKY 674 (728)
T ss_pred hhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHH
Confidence 689999999999988888777554 8899999999987643
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.06 E-value=0.0059 Score=35.07 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=28.9
Q ss_pred CCcccccCCCH---HHHHHHHHHHHHh-cCCCEEEEEccCccc-------ccc-CCEEEEEe
Q psy10474 1 MFRLFGSALDN---ESEKLVQAALESA-CKGRTVLMIAHRLST-------VQN-ADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~---~~~~~~~~~~~~~-~~~~tvi~vtH~~~~-------~~~-~d~v~~l~ 50 (79)
|+||+|+.++. .....+...+... ..+.|+++++|.... +.. +|.++.++
T Consensus 125 viDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 125 IIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred EEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 58999965543 3222332234332 347899999987654 223 56666665
No 459
>COG4637 Predicted ATPase [General function prediction only]
Probab=96.03 E-value=0.017 Score=35.30 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=40.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc--CCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN--ADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l~ 50 (79)
++|||-.+|=|..--.+..++.+.++...||++||....+.. ...+++.+
T Consensus 295 ~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~~v~~~~ 346 (373)
T COG4637 295 LLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEHSVFWLD 346 (373)
T ss_pred EecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhccccceEEec
Confidence 589999999999888888888888776689999999887743 45555554
No 460
>KOG0962|consensus
Probab=95.49 E-value=0.017 Score=40.67 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=28.6
Q ss_pred CcccccCCCHHHHHHHHH----HHHHhc--CCCEEEEEccCcccc
Q psy10474 2 FRLFGSALDNESEKLVQA----ALESAC--KGRTVLMIAHRLSTV 40 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~----~~~~~~--~~~tvi~vtH~~~~~ 40 (79)
|||||++||..+...+.. ++.... ...-.|++||+-.++
T Consensus 1213 LDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv 1257 (1294)
T KOG0962|consen 1213 LDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFV 1257 (1294)
T ss_pred ccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHH
Confidence 799999999987654443 333332 377889999998766
No 461
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.25 E-value=0.016 Score=33.98 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=36.8
Q ss_pred cccCCCHHHHHH-HHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEe
Q psy10474 5 FGSALDNESEKL-VQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIV 55 (79)
Q Consensus 5 ~~s~lD~~~~~~-~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 55 (79)
+|+.+|+..... +. +.... .+.|.|+++|.+......+.|.++++|++.
T Consensus 162 ~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 162 ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRK 212 (249)
T ss_pred eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCcc
Confidence 678888543321 22 34443 478999999999999999999999999974
No 462
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.16 E-value=0.023 Score=37.43 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=27.9
Q ss_pred CCcccccCCCHHHHHHHH-HHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQ-AALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~-~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
|||+|++.||+..+..+. ..+... ...||+.+|+-++-
T Consensus 579 iiD~p~~~lD~~~r~~l~~~~~~~~--~~QvIils~d~e~~ 617 (650)
T TIGR03185 579 IIDTPLGRLDSSHRENLVVNYFPKA--SHQVLLLSTDEEVD 617 (650)
T ss_pred EEcCCccccChHHHHHHHHHHhhcc--CCeEEEEechHhhC
Confidence 589999999998776654 455443 56788888887554
No 463
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=94.52 E-value=0.032 Score=38.01 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=25.3
Q ss_pred CCccc---ccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccc
Q psy10474 1 MFRLF---GSALDNESEKLVQAALESACK--GRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~---~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~ 40 (79)
||||+ |+.+|... ....+++.+.. +++++++||..+..
T Consensus 691 llDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~el~ 733 (854)
T PRK05399 691 LLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHELT 733 (854)
T ss_pred EEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechHHHH
Confidence 68999 77777443 33444444432 57899999996544
No 464
>KOG0964|consensus
Probab=94.40 E-value=0.019 Score=39.52 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=43.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
+|||..++||+..+..+..++.++......|..|-+++.+.-+|.++...
T Consensus 1124 lfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~vAdKfygV~ 1173 (1200)
T KOG0964|consen 1124 LFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLSVADKFYGVK 1173 (1200)
T ss_pred hHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHHHHHhhhcee
Confidence 69999999999999999999999887778888888888887788877554
No 465
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.56 E-value=0.27 Score=28.04 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHhc-CCCEEEEEccCc---------ccccc-CCEEEEEe
Q psy10474 9 LDNESEKLVQAALESAC-KGRTVLMIAHRL---------STVQN-ADLIVVLQ 50 (79)
Q Consensus 9 lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~---------~~~~~-~d~v~~l~ 50 (79)
.+...+..+..++.... .+.|+++++|.. ..+.. +|.++.++
T Consensus 125 ~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 125 DDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 34445556666666654 488999999852 22344 78888885
No 466
>KOG0063|consensus
Probab=93.31 E-value=0.058 Score=34.56 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=40.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh--cCCCEEEEEccCcccccc-CCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA--CKGRTVLMIAHRLSTVQN-ADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~--~~~~tvi~vtH~~~~~~~-~d~v~~l~~ 51 (79)
+.|||.+-||..++......+.+. ..++|-.+|.|++--.-. +|+|++...
T Consensus 479 liDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 479 LIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 369999999999887666666543 458899999999866644 899999864
No 467
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.21 E-value=0.12 Score=29.82 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccc
Q psy10474 8 ALDNESEKLVQAALESAC--KGRTVLMIAHRLSTV 40 (79)
Q Consensus 8 ~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~ 40 (79)
..|+.....+...+...+ .++++|+++|.....
T Consensus 128 ~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 128 ENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 468876666666665543 388999999987433
No 468
>PF13514 AAA_27: AAA domain
Probab=91.67 E-value=0.28 Score=34.53 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=36.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~ 41 (79)
|+|.++.+.|..-...+..++.......-||+-||+...+.
T Consensus 1056 IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1056 ILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVE 1096 (1111)
T ss_pred EeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHH
Confidence 68999999999999999999988888889999999887664
No 469
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=91.58 E-value=0.32 Score=28.31 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=27.1
Q ss_pred CCcccccCCCHHHHHHH-HHHHHHhc--CCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLV-QAALESAC--KGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~-~~~~~~~~--~~~tvi~vtH~~~~~ 40 (79)
++||+..+=++.....+ ...++.+. .+..++++||..+..
T Consensus 127 liDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~ 169 (235)
T PF00488_consen 127 LIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELA 169 (235)
T ss_dssp EEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGG
T ss_pred ecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhH
Confidence 58999999999865443 44455443 277889999998765
No 470
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.34 E-value=0.17 Score=27.84 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=38.7
Q ss_pred CCcccccCCCHH--HHHHHHHHHHHhcCCCEEEEEccCcccc--ccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNE--SEKLVQAALESACKGRTVLMIAHRLSTV--QNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~--~~~~~~~~~~~~~~~~tvi~vtH~~~~~--~~~d~v~~l~~ 51 (79)
||||...+++.. ....+.+++...-.+..+|+..++++.- ..+|-|.-|+.
T Consensus 100 VLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 100 ILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred EEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 689999887554 5677888887766688999999998633 44898887754
No 471
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.08 E-value=0.38 Score=31.85 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=32.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLST 39 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~ 39 (79)
|+|-|.|++|.........++.... .++.+++.||+--+
T Consensus 560 ViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF 599 (758)
T COG4694 560 VIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYF 599 (758)
T ss_pred EecCCccccchhHHHHHHHHHHHHHhCceEEEEEecccee
Confidence 6899999999998888888887664 58899999999543
No 472
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=91.00 E-value=0.19 Score=28.23 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=40.0
Q ss_pred CCcccccCCCHH--HHHHHHHHHHHhcCCCEEEEEccCcccc--ccCCEEEEEeCc
Q psy10474 1 MFRLFGSALDNE--SEKLVQAALESACKGRTVLMIAHRLSTV--QNADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~--~~~~~~~~~~~~~~~~tvi~vtH~~~~~--~~~d~v~~l~~G 52 (79)
||||...+++.. ....+.+++...-.+..+|+.-+.+..- ..+|.|.-|+.+
T Consensus 120 VLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~~~ 175 (178)
T PRK07414 120 VLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQITELRRS 175 (178)
T ss_pred EEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeeeeeecc
Confidence 689999888765 5667777887765688999999988643 449999888765
No 473
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=90.66 E-value=0.26 Score=33.12 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=32.5
Q ss_pred CCcccccCCC-HHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474 1 MFRLFGSALD-NESEKLVQAALESACK-GRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD-~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~ 40 (79)
++||++.-++ +.....+...++..++ +..++++||.+..+
T Consensus 634 ~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~~~d~ 675 (785)
T TIGR00929 634 IIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQSINDA 675 (785)
T ss_pred EEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5899999985 6677788888887765 88999999998754
No 474
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=90.21 E-value=0.82 Score=30.30 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc--CCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN--ADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l~ 50 (79)
+++||-..|=|..+..++.++.....+..+|++||....+.. -+.++.+.
T Consensus 306 LiEEPEahLHPq~q~~l~~ll~~l~~~~Q~IvTThS~~~~s~~dl~si~~lv 357 (581)
T COG3593 306 LIEEPEAHLHPQLQAVLWDLLNNLPLGLQRIVTTHSPHLLSLADLDSICRLV 357 (581)
T ss_pred EEeCchhhcCHHHHHHHHHHHhcCCcceEEEEEcCCcccccccCcccEEEEE
Confidence 468999999999988888888766546788999999987753 56666543
No 475
>PF12846 AAA_10: AAA-like domain
Probab=90.15 E-value=0.22 Score=29.13 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCcccccCCCHH-HHHHHHHHHHHhcC-CCEEEEEccCccccc
Q psy10474 1 MFRLFGSALDNE-SEKLVQAALESACK-GRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD~~-~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~ 41 (79)
++||+..-++.. ....+..++++.++ +..++++||.+..+.
T Consensus 225 ~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~ 267 (304)
T PF12846_consen 225 VIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQSPSDLP 267 (304)
T ss_pred EeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeCCHHHHh
Confidence 589998888764 45566677777665 899999999997775
No 476
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=89.95 E-value=0.28 Score=33.63 Aligned_cols=41 Identities=5% Similarity=0.104 Sum_probs=32.5
Q ss_pred CCcccccCCC-HHHHHHHHHHHHHhcC-CCEEEEEccCccccc
Q psy10474 1 MFRLFGSALD-NESEKLVQAALESACK-GRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD-~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~ 41 (79)
++||++..|+ +.....+....+..++ +..++++||.+..+.
T Consensus 670 viDEaW~lL~~p~~a~fi~~~~kt~RK~ng~~i~iTQs~~Dll 712 (829)
T TIGR03783 670 LIEEAWKAIASANMAEYIKYLYKTVRKYFGEAIVVTQEVDDII 712 (829)
T ss_pred EEeCHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEEcCCHHHHh
Confidence 5899999995 5567778888877766 889999999986553
No 477
>KOG0996|consensus
Probab=89.63 E-value=0.17 Score=35.70 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=40.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
||||..+|||..+.-.+.+.+.+..+....|+|+=+-..+..+++.+-+.
T Consensus 1222 VMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLRnnMFELa~rLvGIY 1271 (1293)
T KOG0996|consen 1222 VMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLRNNMFELANRLVGIY 1271 (1293)
T ss_pred ehhhHHHhhccccchhHHHHHHHhccCCeEEEEEehhhHHHHHhhheeeE
Confidence 69999999999999999999998878788888887666666666665543
No 478
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=89.63 E-value=1.6 Score=24.23 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=35.3
Q ss_pred ccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccc--cc-cCCEEEEEeCce
Q psy10474 6 GSALDNESEKLVQAALESACK-GRTVLMIAHRLST--VQ-NADLIVVLQAGQ 53 (79)
Q Consensus 6 ~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~--~~-~~d~v~~l~~G~ 53 (79)
.+.++|.....+...+..... +.++++.+|.+.+ +. .||.++++..+.
T Consensus 83 e~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 83 NNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred HHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 356788888888777766543 5688999998854 43 499999987654
No 479
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=88.91 E-value=0.73 Score=29.71 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=29.4
Q ss_pred cccCCCHHH--HHHHHHHHHHhc-CCCEEEEEccCcc---------cccc-CCEEEEEe
Q psy10474 5 FGSALDNES--EKLVQAALESAC-KGRTVLMIAHRLS---------TVQN-ADLIVVLQ 50 (79)
Q Consensus 5 ~~s~lD~~~--~~~~~~~~~~~~-~~~tvi~vtH~~~---------~~~~-~d~v~~l~ 50 (79)
+.+++|... +..+..++..+. .+.|+|+++|... .... +|.++.|+
T Consensus 142 l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~ 200 (509)
T PRK09302 142 LFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILR 200 (509)
T ss_pred HHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECCccCcCCccccCceEEEeeEEEEEe
Confidence 445555543 455666665554 4899999999764 1233 78888876
No 480
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=88.43 E-value=0.34 Score=27.11 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=38.6
Q ss_pred CCcccccCCCHH--HHHHHHHHHHHhcCCCEEEEEccCcccc--ccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNE--SEKLVQAALESACKGRTVLMIAHRLSTV--QNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~--~~~~~~~~~~~~~~~~tvi~vtH~~~~~--~~~d~v~~l~~ 51 (79)
||||...+++.. ....+.+++...-.+..+|++.+.++.- ..+|.|.-|..
T Consensus 102 VLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 102 LLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred EehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 689999888765 5567777887655678899999988643 44999988865
No 481
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.67 E-value=0.21 Score=31.69 Aligned_cols=61 Identities=8% Similarity=0.193 Sum_probs=36.5
Q ss_pred CCcccccCCCHH-HHHHHHHHHHHhc-CCCEEEEEc-cCcccccc-CCEEE-EEeCceEeeecChh
Q psy10474 1 MFRLFGSALDNE-SEKLVQAALESAC-KGRTVLMIA-HRLSTVQN-ADLIV-VLQAGQIVEMGNHK 61 (79)
Q Consensus 1 ~~de~~s~lD~~-~~~~~~~~~~~~~-~~~tvi~vt-H~~~~~~~-~d~v~-~l~~G~i~~~~~~~ 61 (79)
++||+...++.. .+..+...+.... .++.+|+++ |.+..+.. .+++. .+..|-++...+|.
T Consensus 199 lIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd 264 (440)
T PRK14088 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_pred EEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCC
Confidence 589999888754 4455666665543 366777766 56655543 34443 35566665554443
No 482
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=87.09 E-value=1.2 Score=27.87 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=34.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccc----cCCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQ----NADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~----~~d~v~~l~~G~i 54 (79)
+||+..|.||..-+..+.... ..+..+++.+-+.+.+. ...+++...+|++
T Consensus 307 LLDDv~seLD~~Rr~~Ll~~~---~~~~Q~fvT~t~~~~~~~~~~~~~~~f~V~~g~i 361 (363)
T COG1195 307 LLDDVASELDDGRRAALLDTI---ELGVQVFVTTTDLEDIDDNLDENAQMFHVEDGKI 361 (363)
T ss_pred EechhhHhhCHHHHHHHHhhc---ccCCeEEEEccCHHHhhhhhhccceEEEEeccee
Confidence 589999999999887777662 22445555555555443 2347777788876
No 483
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.56 E-value=2.4 Score=27.36 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhc-CCCEEEEEccCccc--------c-cc-CCEEEEEe
Q psy10474 13 SEKLVQAALESAC-KGRTVLMIAHRLST--------V-QN-ADLIVVLQ 50 (79)
Q Consensus 13 ~~~~~~~~~~~~~-~~~tvi~vtH~~~~--------~-~~-~d~v~~l~ 50 (79)
.+..+..++..+. .++|+|+++|+... + .. +|.|+.++
T Consensus 142 ~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 142 VRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4455666666554 48999999998754 1 33 68888775
No 484
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=86.40 E-value=0.6 Score=31.61 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=32.2
Q ss_pred CCcccccCCC---HHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474 1 MFRLFGSALD---NESEKLVQAALESACK-GRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD---~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~ 40 (79)
++||++.-++ +.....+....+..++ +..++++|+.+..+
T Consensus 642 viDEaw~ll~~~~~~~~~~i~~~~r~~RK~g~~~~~~TQ~~~D~ 685 (797)
T TIGR02746 642 IIDEAWSLLDGANPQAADFIETGYRRARKYGGAFITITQGIEDF 685 (797)
T ss_pred EEecHHHHhhcccHHHHHHHHHHHHHHhhcCceEEEEEecHHHh
Confidence 5799999985 5567777888877766 88999999999765
No 485
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.11 E-value=0.17 Score=30.56 Aligned_cols=57 Identities=5% Similarity=0.038 Sum_probs=37.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
++||+.+ .....++..... +.+++.++|..+.....+|+..+..|++...|.+.+..
T Consensus 223 i~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 223 ILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred EEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 4678875 223344554444 44568888998855558888888888877766666554
No 486
>KOG0933|consensus
Probab=85.87 E-value=0.75 Score=32.38 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=35.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLI 46 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v 46 (79)
||||..+|||-....-|..++...+.+...|+|+=--..+..++++
T Consensus 1109 ILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKeGMF~NANvL 1154 (1174)
T KOG0933|consen 1109 ILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKEGMFNNANVL 1154 (1174)
T ss_pred ehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchhhccccchhh
Confidence 7999999999999999999999888888888887333333334443
No 487
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=85.82 E-value=0.96 Score=31.23 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=25.9
Q ss_pred CCcccccCCCHHHHHHHHH-HHHHhc--CCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQA-ALESAC--KGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~-~~~~~~--~~~tvi~vtH~~~~~ 40 (79)
+|||+..|-++.....+.. +++.+. .++.++++||..+..
T Consensus 676 llDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~ 718 (840)
T TIGR01070 676 LFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELT 718 (840)
T ss_pred EEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHH
Confidence 5899977777765444333 333332 477899999987644
No 488
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=85.47 E-value=1.2 Score=27.39 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRL 37 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~ 37 (79)
|.-+|.++|-|+.+-.+..++.+.+. |..+++-||.-
T Consensus 265 IIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSd 302 (374)
T COG4938 265 IIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSD 302 (374)
T ss_pred EEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechH
Confidence 35689999999999999999988765 88888888753
No 489
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=85.43 E-value=0.62 Score=32.01 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=32.3
Q ss_pred CCcccccCCC---HHHHHHHHHHHHHhcC-CCEEEEEccCccccc
Q psy10474 1 MFRLFGSALD---NESEKLVQAALESACK-GRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD---~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~ 41 (79)
++||++.-|+ +.....+....+..++ +..++++||.+..+.
T Consensus 664 viDEaw~lL~~~~~~~~~fi~~~~r~~RK~~g~~i~~TQsi~D~~ 708 (844)
T PRK13721 664 VIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFD 708 (844)
T ss_pred EEhhHHHHhccCChHHHHHHHHHHHHHHHhCCeEEEEecCHHHhh
Confidence 4799999994 5567778888877765 888899999987653
No 490
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=85.42 E-value=5.7 Score=23.53 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=34.8
Q ss_pred HHHhcCCCEEEEEccCccc--c--ccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 21 LESACKGRTVLMIAHRLST--V--QNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 21 ~~~~~~~~tvi~vtH~~~~--~--~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+.+...++.+++-+-+-.. . ...+|++++.+|++++.|.+....-+......++
T Consensus 176 l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L 233 (237)
T PF00837_consen 176 LKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWL 233 (237)
T ss_pred HHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHH
Confidence 3333357787775544321 1 3379999999999999988766544444554444
No 491
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=85.33 E-value=0.61 Score=26.18 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=27.6
Q ss_pred CCcccccCCCHHHHH-----HHHHHHHHhc-CCCEEEEEccCccccc----c-CCEEEEEe
Q psy10474 1 MFRLFGSALDNESEK-----LVQAALESAC-KGRTVLMIAHRLSTVQ----N-ADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~-----~~~~~~~~~~-~~~tvi~vtH~~~~~~----~-~d~v~~l~ 50 (79)
|+||+..-+.+.... ...+.+...+ .|..++++|+++..+. . ++..+.+.
T Consensus 84 viDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 84 VIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 589999888776542 2223343333 3889999999997652 2 45555553
No 492
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=85.33 E-value=0.45 Score=27.05 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=38.5
Q ss_pred CCcccccCCCHH--HHHHHHHHHHHhcCCCEEEEEccCccc-c-ccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNE--SEKLVQAALESACKGRTVLMIAHRLST-V-QNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~--~~~~~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~ 51 (79)
||||...+++.. ....+.+++...-.+..+|++-++.+. + ..+|.|.-|..
T Consensus 120 VLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 120 VLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred EEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 689999998765 566777788765557888999888863 3 44898888754
No 493
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=84.15 E-value=3.6 Score=23.50 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=16.9
Q ss_pred CCCEEEEEccCcc--------cccc-CCEEEEEe
Q psy10474 26 KGRTVLMIAHRLS--------TVQN-ADLIVVLQ 50 (79)
Q Consensus 26 ~~~tvi~vtH~~~--------~~~~-~d~v~~l~ 50 (79)
.+.|+++++|... .+.. +|.|+.++
T Consensus 155 ~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 155 WNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 4999999999643 1233 67777665
No 494
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=83.72 E-value=1.7 Score=27.09 Aligned_cols=39 Identities=10% Similarity=0.207 Sum_probs=29.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
|+||+. .+++.....+.+.+++...+..+|+++|++..+
T Consensus 146 iIDead-~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~l 184 (365)
T PRK07471 146 IVDTAD-EMNANAANALLKVLEEPPARSLFLLVSHAPARL 184 (365)
T ss_pred EEechH-hcCHHHHHHHHHHHhcCCCCeEEEEEECCchhc
Confidence 467765 678888888888888766677888999998655
No 495
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=83.70 E-value=1 Score=30.80 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=36.9
Q ss_pred CCcccccCCCHH-HHHHHHHHHHHhcC-CCEEEEEccCccccc----------cCCEEEEEeCc
Q psy10474 1 MFRLFGSALDNE-SEKLVQAALESACK-GRTVLMIAHRLSTVQ----------NADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~-~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~----------~~d~v~~l~~G 52 (79)
++||++..|+.. ....+.+.+...++ +..++++||.+..+. .|...++|.+.
T Consensus 632 ~iDEaw~~l~~~~~~~~i~~~~kt~RK~ng~~~~~TQs~~D~~~s~~~~~i~~n~~t~I~Lpn~ 695 (789)
T PRK13853 632 SCDEFRAYLLNPKFAAVVDKFLLTVRKNNGMLILATQQPEHVLESPLGASLVAQCMTKIFYPSP 695 (789)
T ss_pred EEechhHHhCCHHHHHHHHHHHHHHHHcCeEEEEecCCHHHHHcCchHHHHHHhCCeEEEcCCc
Confidence 479998888644 56777777877766 888899999986442 24555566553
No 496
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=81.54 E-value=0.64 Score=26.00 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCcccccCCCHH--HHHHHHHHHHHhcCCCEEEEEccCcc-cc-ccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNE--SEKLVQAALESACKGRTVLMIAHRLS-TV-QNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~--~~~~~~~~~~~~~~~~tvi~vtH~~~-~~-~~~d~v~~l~~ 51 (79)
||||...+++.. ....+..++........+|++-++++ .+ ..+|-|.-|..
T Consensus 101 ILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADlVTem~~ 155 (172)
T PF02572_consen 101 ILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADLVTEMRE 155 (172)
T ss_dssp EEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SEEEEEEE
T ss_pred EEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCeeeeece
Confidence 689998888765 56777788876556788888888886 33 34899988853
No 497
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=81.14 E-value=4.5 Score=28.42 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=38.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc--ccCCEEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV--QNADLIVVL 49 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~--~~~d~v~~l 49 (79)
|+|-.+-+.|+.....+++.+..+..+..||+-||+.... ....+++.+
T Consensus 931 i~DD~fVhFD~~R~~r~~e~l~dls~~~QviYFTCHe~~~d~~~s~~vI~l 981 (984)
T COG4717 931 IADDIFVHFDDERAKRMLELLADLSEGNQVIYFTCHEHTCDAFPSSEVITL 981 (984)
T ss_pred eeccchhccCHHHHHHHHHHHHHhccCCeEEEEEechhhhcccccccceee
Confidence 5688888999999999999999998899999999887764 224444443
No 498
>KOG0018|consensus
Probab=79.87 E-value=2.2 Score=30.39 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
||||..+|||..+...+...+. ..+...|+|+=-..++..+|..+-+..
T Consensus 1078 vlDEiDAALDntNi~kvasyIr--~~~~Q~IvISLK~~~y~kadaLVGvyr 1126 (1141)
T KOG0018|consen 1078 VLDEIDAALDNTNIGKVASYIR--SSNFQFIVISLKEEFYQKADALVGVYR 1126 (1141)
T ss_pred ehhhHHHHhhhccHHHHHHHHh--cCCceEEEEeccHHHhhhhhceeeecc
Confidence 7999999999999999998887 446667777754455555666555544
No 499
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=78.58 E-value=11 Score=24.41 Aligned_cols=28 Identities=11% Similarity=0.468 Sum_probs=20.5
Q ss_pred CCCEEEEEccCccc--------ccc-CCEEEEEeCce
Q psy10474 26 KGRTVLMIAHRLST--------VQN-ADLIVVLQAGQ 53 (79)
Q Consensus 26 ~~~tvi~vtH~~~~--------~~~-~d~v~~l~~G~ 53 (79)
.+.|+++++|.... +.. +|.|+.++.++
T Consensus 211 ~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 211 RGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred hCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 38999999996543 445 88898887543
No 500
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=78.58 E-value=6.2 Score=25.57 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=21.5
Q ss_pred CCEEEEEccCcccc-ccCCEEEEEeCceEe
Q psy10474 27 GRTVLMIAHRLSTV-QNADLIVVLQAGQIV 55 (79)
Q Consensus 27 ~~tvi~vtH~~~~~-~~~d~v~~l~~G~i~ 55 (79)
|.+.|+|.=....+ ..+|+|+.|++-+..
T Consensus 388 GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 388 GVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred CceEEEEeccchhhHhhCCEEEEecCccch
Confidence 77777777666555 559999999987643
Done!