Query psy10474
Match_columns 79
No_of_seqs 105 out of 1154
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 19:08:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nh6_A ATP-binding cassette SU 99.8 3.8E-20 1.3E-24 108.2 7.3 75 1-75 213-287 (306)
2 4f4c_A Multidrug resistance pr 99.8 5.5E-20 1.9E-24 122.1 6.0 76 1-76 1240-1315(1321)
3 4a82_A Cystic fibrosis transme 99.8 6.8E-19 2.3E-23 109.6 9.2 76 1-76 500-575 (578)
4 2ff7_A Alpha-hemolysin translo 99.8 1.5E-18 5.3E-23 98.8 9.3 74 1-74 168-242 (247)
5 2ghi_A Transport protein; mult 99.8 1.5E-18 5.1E-23 99.5 8.5 74 1-74 178-251 (260)
6 3qf4_A ABC transporter, ATP-bi 99.8 7.2E-19 2.5E-23 109.7 7.5 75 1-75 502-576 (587)
7 3gfo_A Cobalt import ATP-bindi 99.8 8.1E-19 2.8E-23 101.3 7.1 66 1-66 166-234 (275)
8 3qf4_B Uncharacterized ABC tra 99.8 9.3E-19 3.2E-23 109.4 7.6 75 1-75 514-588 (598)
9 2ixe_A Antigen peptide transpo 99.8 1.7E-18 5.9E-23 99.8 7.6 74 1-74 179-254 (271)
10 3b60_A Lipid A export ATP-bind 99.8 2.3E-18 7.8E-23 107.3 8.6 75 1-75 503-577 (582)
11 3b5x_A Lipid A export ATP-bind 99.8 2.8E-18 9.6E-23 106.9 7.8 75 1-75 503-577 (582)
12 3g5u_A MCG1178, multidrug resi 99.8 4.3E-18 1.5E-22 113.0 8.9 76 1-76 1194-1269(1284)
13 3tui_C Methionine import ATP-b 99.8 1.2E-18 4.2E-23 103.7 5.8 68 1-68 186-256 (366)
14 4f4c_A Multidrug resistance pr 99.8 2.3E-18 7.9E-23 114.5 7.5 75 1-75 577-651 (1321)
15 2cbz_A Multidrug resistance-as 99.7 4.7E-18 1.6E-22 96.3 7.4 74 1-74 150-226 (237)
16 4g1u_C Hemin import ATP-bindin 99.7 2.2E-18 7.5E-23 99.1 5.1 65 1-65 170-237 (266)
17 3rlf_A Maltose/maltodextrin im 99.7 3.6E-18 1.2E-22 102.2 6.1 70 1-70 156-228 (381)
18 3fvq_A Fe(3+) IONS import ATP- 99.7 5.6E-18 1.9E-22 100.8 6.7 70 1-70 161-233 (359)
19 3gd7_A Fusion complex of cysti 99.7 7.6E-18 2.6E-22 101.1 6.9 71 1-71 178-248 (390)
20 2olj_A Amino acid ABC transpor 99.7 6.6E-18 2.2E-22 97.0 6.1 67 1-67 182-250 (263)
21 1g6h_A High-affinity branched- 99.7 8.2E-18 2.8E-22 96.3 6.5 62 1-62 176-239 (257)
22 1b0u_A Histidine permease; ABC 99.7 5.6E-18 1.9E-22 97.2 5.7 66 1-66 176-243 (262)
23 1mv5_A LMRA, multidrug resista 99.7 1.5E-18 5.3E-23 98.6 3.3 74 1-74 162-235 (243)
24 2onk_A Molybdate/tungstate ABC 99.7 7E-18 2.4E-22 95.8 5.3 66 1-66 149-217 (240)
25 3tif_A Uncharacterized ABC tra 99.7 6.3E-18 2.2E-22 95.7 4.7 63 1-63 168-232 (235)
26 2yz2_A Putative ABC transporte 99.7 1.8E-17 6.1E-22 95.3 6.3 65 1-65 161-227 (266)
27 1ji0_A ABC transporter; ATP bi 99.7 1.2E-17 4E-22 94.9 5.4 65 1-65 162-228 (240)
28 2yl4_A ATP-binding cassette SU 99.7 8E-18 2.7E-22 105.1 5.1 74 1-74 506-580 (595)
29 2zu0_C Probable ATP-dependent 99.7 3.8E-17 1.3E-21 94.0 7.4 64 1-64 187-253 (267)
30 2it1_A 362AA long hypothetical 99.7 1.8E-17 6.1E-22 98.7 6.0 69 1-69 156-227 (362)
31 2yyz_A Sugar ABC transporter, 99.7 2E-17 6.8E-22 98.5 6.1 69 1-69 156-227 (359)
32 1z47_A CYSA, putative ABC-tran 99.7 2.1E-17 7.2E-22 98.2 6.1 68 1-68 168-238 (355)
33 1g29_1 MALK, maltose transport 99.7 2E-17 6.9E-22 98.8 6.1 69 1-69 162-233 (372)
34 1vpl_A ABC transporter, ATP-bi 99.7 1.8E-17 6E-22 94.9 5.5 64 1-64 169-234 (256)
35 2pze_A Cystic fibrosis transme 99.7 1.4E-17 4.8E-22 94.0 4.9 70 1-70 153-223 (229)
36 3d31_A Sulfate/molybdate ABC t 99.7 1.8E-17 6.1E-22 98.3 5.3 69 1-69 150-221 (348)
37 1v43_A Sugar-binding transport 99.7 2.7E-17 9.4E-22 98.2 6.1 69 1-69 164-235 (372)
38 2d2e_A SUFC protein; ABC-ATPas 99.7 7.5E-17 2.6E-21 92.0 7.6 61 1-61 166-229 (250)
39 1oxx_K GLCV, glucose, ABC tran 99.7 2E-17 7E-22 98.2 5.1 69 1-69 163-234 (353)
40 3g5u_A MCG1178, multidrug resi 99.7 3.2E-17 1.1E-21 108.9 6.3 74 1-74 549-622 (1284)
41 2qi9_C Vitamin B12 import ATP- 99.7 2.3E-17 8E-22 94.1 4.9 65 1-65 156-222 (249)
42 2ihy_A ABC transporter, ATP-bi 99.7 3.4E-17 1.2E-21 94.7 4.9 65 1-65 184-252 (279)
43 2pcj_A ABC transporter, lipopr 99.7 4.3E-17 1.5E-21 91.7 4.9 59 1-59 163-222 (224)
44 2pjz_A Hypothetical protein ST 99.7 1.7E-16 5.9E-21 91.1 6.9 62 1-64 151-214 (263)
45 2nq2_C Hypothetical ABC transp 99.7 7.7E-17 2.6E-21 92.1 4.8 64 1-65 151-217 (253)
46 3ux8_A Excinuclease ABC, A sub 99.7 2.8E-16 9.6E-21 99.2 6.7 66 1-66 569-641 (670)
47 3pih_A Uvrabc system protein A 99.6 3.1E-16 1.1E-20 101.7 6.6 70 1-70 831-907 (916)
48 2bbs_A Cystic fibrosis transme 99.6 1.8E-16 6.2E-21 92.1 4.6 65 1-65 182-247 (290)
49 3ux8_A Excinuclease ABC, A sub 99.6 7.8E-16 2.7E-20 97.2 4.8 68 1-68 227-301 (670)
50 3pih_A Uvrabc system protein A 99.6 4.8E-15 1.6E-19 96.2 5.7 67 1-67 489-562 (916)
51 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 6.1E-15 2.1E-19 87.9 4.9 56 1-56 308-364 (365)
52 2vf7_A UVRA2, excinuclease ABC 99.5 8.8E-15 3E-19 94.4 5.6 67 1-67 756-829 (842)
53 2r6f_A Excinuclease ABC subuni 99.5 1.3E-14 4.3E-19 94.5 6.4 67 1-67 871-944 (972)
54 3j16_B RLI1P; ribosome recycli 99.5 3.5E-15 1.2E-19 93.6 3.6 66 1-66 490-560 (608)
55 2ygr_A Uvrabc system protein A 99.5 2E-14 6.9E-19 93.7 6.7 67 1-67 889-962 (993)
56 2r6f_A Excinuclease ABC subuni 99.5 9E-15 3.1E-19 95.1 4.2 65 1-65 529-600 (972)
57 2ygr_A Uvrabc system protein A 99.5 1.2E-14 4.2E-19 94.7 4.8 66 1-66 546-618 (993)
58 4aby_A DNA repair protein RECN 99.5 5.2E-14 1.8E-18 84.5 6.6 57 1-57 320-380 (415)
59 1yqt_A RNAse L inhibitor; ATP- 99.5 1.2E-14 4E-19 90.3 3.6 65 1-65 424-493 (538)
60 2vf7_A UVRA2, excinuclease ABC 99.5 3.5E-14 1.2E-18 91.6 5.4 66 1-66 404-476 (842)
61 2iw3_A Elongation factor 3A; a 99.5 6.2E-14 2.1E-18 91.5 6.4 62 1-64 571-634 (986)
62 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 1.8E-13 6.2E-18 72.9 6.5 53 1-53 86-141 (148)
63 3bk7_A ABC transporter ATP-bin 99.5 4E-14 1.4E-18 88.9 4.3 65 1-65 494-563 (607)
64 3ozx_A RNAse L inhibitor; ATP 99.4 1.2E-13 4.3E-18 85.7 4.1 53 1-53 161-214 (538)
65 3ozx_A RNAse L inhibitor; ATP 99.4 1.2E-13 4.1E-18 85.8 3.6 60 1-60 408-472 (538)
66 3j16_B RLI1P; ribosome recycli 99.4 2.9E-13 9.9E-18 85.1 4.6 53 1-53 244-298 (608)
67 1yqt_A RNAse L inhibitor; ATP- 99.4 1.4E-13 4.8E-18 85.5 3.1 52 1-52 181-234 (538)
68 2iw3_A Elongation factor 3A; a 99.4 2.1E-13 7E-18 89.1 3.1 57 1-59 924-981 (986)
69 3bk7_A ABC transporter ATP-bin 99.4 4.2E-13 1.4E-17 84.4 3.7 52 1-52 251-304 (607)
70 1sgw_A Putative ABC transporte 99.3 1.1E-13 3.7E-18 77.5 -0.5 53 1-54 156-210 (214)
71 1e69_A Chromosome segregation 99.3 8E-12 2.7E-16 73.3 6.6 55 1-55 246-302 (322)
72 4ad8_A DNA repair protein RECN 99.3 1.7E-12 5.7E-17 80.2 3.0 52 1-52 422-473 (517)
73 3kta_B Chromosome segregation 99.2 1.3E-11 4.4E-16 67.2 5.1 54 1-54 91-146 (173)
74 3qkt_A DNA double-strand break 99.2 1.7E-11 5.9E-16 72.4 5.7 50 1-50 277-327 (339)
75 2o5v_A DNA replication and rep 99.2 4.8E-11 1.6E-15 71.2 6.2 58 1-63 297-354 (359)
76 3auy_A DNA double-strand break 99.1 2.2E-10 7.7E-15 68.3 5.4 51 1-51 310-360 (371)
77 1w1w_A Structural maintenance 98.9 2.3E-09 8E-14 65.0 5.0 50 1-50 360-410 (430)
78 2npi_A Protein CLP1; CLP1-PCF1 98.9 2E-10 6.8E-15 70.4 0.3 59 1-63 264-336 (460)
79 4gp7_A Metallophosphoesterase; 98.9 6.7E-11 2.3E-15 63.9 -2.0 45 1-45 106-167 (171)
80 3thx_A DNA mismatch repair pro 98.9 4.5E-10 1.5E-14 73.5 1.0 59 1-59 746-807 (934)
81 2ehv_A Hypothetical protein PH 98.8 1.8E-09 6.3E-14 60.6 1.4 50 1-50 140-206 (251)
82 1znw_A Guanylate kinase, GMP k 98.6 8.7E-10 3E-14 61.0 -3.6 51 1-51 146-203 (207)
83 2w0m_A SSO2452; RECA, SSPF, un 98.6 3.3E-08 1.1E-12 54.8 2.5 52 1-52 128-192 (235)
84 1tf7_A KAIC; homohexamer, hexa 98.5 5.1E-08 1.7E-12 60.5 3.3 52 1-52 143-210 (525)
85 1tf7_A KAIC; homohexamer, hexa 98.5 2.7E-08 9.2E-13 61.7 1.7 52 1-53 376-444 (525)
86 3b85_A Phosphate starvation-in 98.5 6.5E-08 2.2E-12 53.9 2.0 46 1-54 127-172 (208)
87 1cr0_A DNA primase/helicase; R 98.4 2.5E-07 8.5E-12 53.5 3.3 54 1-54 152-237 (296)
88 2o8b_B DNA mismatch repair pro 98.3 1.7E-07 5.9E-12 62.1 2.4 54 1-55 873-930 (1022)
89 4a74_A DNA repair and recombin 98.3 2.6E-07 8.8E-12 51.3 2.0 53 1-53 130-201 (231)
90 3thx_B DNA mismatch repair pro 98.3 3.7E-07 1.3E-11 60.1 2.7 41 1-41 757-800 (918)
91 1ye8_A Protein THEP1, hypothet 98.3 4E-07 1.4E-11 49.5 2.2 50 1-56 104-159 (178)
92 1wb9_A DNA mismatch repair pro 98.2 1.4E-07 4.7E-12 61.3 -0.4 54 1-54 691-747 (800)
93 2dpy_A FLII, flagellum-specifi 98.0 2.4E-07 8.3E-12 56.6 -2.5 57 6-63 276-342 (438)
94 2cvh_A DNA repair and recombin 97.9 1.3E-05 4.3E-10 44.1 3.2 52 1-52 110-185 (220)
95 2obl_A ESCN; ATPase, hydrolase 97.8 6.5E-07 2.2E-11 53.3 -2.4 56 6-62 189-252 (347)
96 1ewq_A DNA mismatch repair pro 97.7 6.5E-06 2.2E-10 53.4 0.7 39 1-41 660-702 (765)
97 3ec2_A DNA replication protein 97.6 9.3E-05 3.2E-09 39.7 4.1 39 1-39 105-145 (180)
98 1n0w_A DNA repair protein RAD5 97.5 9.8E-05 3.3E-09 41.1 3.5 52 1-52 124-209 (243)
99 1sxj_E Activator 1 40 kDa subu 97.5 0.00013 4.4E-09 42.9 3.7 39 1-40 139-177 (354)
100 1tq4_A IIGP1, interferon-induc 97.4 2.4E-05 8.1E-10 47.7 0.2 47 1-47 189-248 (413)
101 1nlf_A Regulatory protein REPA 97.4 5.3E-05 1.8E-09 43.5 1.5 40 1-40 138-184 (279)
102 1pzn_A RAD51, DNA repair and r 97.4 6.8E-05 2.3E-09 44.6 1.6 40 1-40 236-289 (349)
103 2pt7_A CAG-ALFA; ATPase, prote 97.3 5.9E-06 2E-10 48.8 -3.2 46 1-53 245-291 (330)
104 2v9p_A Replication protein E1; 97.2 9.3E-06 3.2E-10 47.7 -2.9 44 6-63 221-264 (305)
105 2eyu_A Twitching motility prot 97.0 6.6E-05 2.2E-09 43.1 -1.1 43 1-49 103-145 (261)
106 3szr_A Interferon-induced GTP- 97.0 0.00056 1.9E-08 43.5 3.0 58 1-58 151-230 (608)
107 2kjq_A DNAA-related protein; s 96.7 0.00082 2.8E-08 35.4 2.2 36 1-37 88-125 (149)
108 3b9q_A Chloroplast SRP recepto 96.7 0.00061 2.1E-08 39.9 1.8 49 1-54 226-284 (302)
109 2i3b_A HCR-ntpase, human cance 96.6 0.00024 8.1E-09 38.9 -0.5 54 1-58 110-169 (189)
110 3jvv_A Twitching mobility prot 96.6 0.00018 6.3E-09 43.0 -1.2 45 1-51 201-245 (356)
111 3lda_A DNA repair protein RAD5 96.6 0.0017 5.9E-08 39.4 2.9 53 1-53 278-364 (400)
112 2og2_A Putative signal recogni 96.2 0.0019 6.5E-08 38.8 1.8 49 1-54 283-341 (359)
113 2bdt_A BH3686; alpha-beta prot 95.9 0.00035 1.2E-08 37.7 -2.2 54 7-63 126-182 (189)
114 2dr3_A UPF0273 protein PH0284; 95.7 0.0098 3.3E-07 33.0 3.0 51 1-51 133-196 (247)
115 1z6g_A Guanylate kinase; struc 95.3 0.00049 1.7E-08 38.3 -3.2 43 1-50 150-192 (218)
116 3sop_A Neuronal-specific septi 94.2 0.061 2.1E-06 30.9 3.6 36 1-40 118-153 (270)
117 2zr9_A Protein RECA, recombina 94.1 0.08 2.7E-06 31.6 4.0 29 27-55 188-233 (349)
118 3euj_A Chromosome partition pr 93.8 0.17 5.9E-06 31.7 5.2 46 1-50 419-464 (483)
119 1s96_A Guanylate kinase, GMP k 93.7 0.023 7.9E-07 31.7 1.1 31 9-42 115-145 (219)
120 4ag6_A VIRB4 ATPase, type IV s 93.4 0.1 3.4E-06 31.3 3.7 41 1-41 267-311 (392)
121 3asz_A Uridine kinase; cytidin 93.2 0.0023 7.7E-08 35.0 -3.4 37 1-37 116-161 (211)
122 2qnr_A Septin-2, protein NEDD5 92.4 0.097 3.3E-06 30.5 2.6 34 1-38 132-168 (301)
123 2bbw_A Adenylate kinase 4, AK4 92.4 0.065 2.2E-06 30.0 1.8 24 1-24 169-196 (246)
124 2ewv_A Twitching motility prot 91.8 0.014 4.9E-07 35.0 -1.4 32 1-38 214-245 (372)
125 1pui_A ENGB, probable GTP-bind 91.4 0.044 1.5E-06 29.6 0.3 24 2-25 174-197 (210)
126 1ni3_A YCHF GTPase, YCHF GTP-b 91.2 0.00038 1.3E-08 42.2 -8.7 58 1-60 146-208 (392)
127 2r6a_A DNAB helicase, replicat 90.9 0.27 9.2E-06 30.2 3.4 53 1-53 318-400 (454)
128 1lvg_A Guanylate kinase, GMP k 90.7 0.0047 1.6E-07 33.7 -4.0 45 1-51 129-173 (198)
129 2qag_C Septin-7; cell cycle, c 90.5 0.36 1.2E-05 29.6 3.7 36 1-40 144-180 (418)
130 1lw7_A Transcriptional regulat 88.2 0.056 1.9E-06 32.2 -0.9 43 6-49 296-341 (365)
131 2ius_A DNA translocase FTSK; n 84.8 0.31 1.1E-05 30.8 1.0 38 1-38 302-343 (512)
132 1ls1_A Signal recognition part 83.0 1.7 5.8E-05 25.2 3.6 31 1-31 185-216 (295)
133 2z4s_A Chromosomal replication 82.3 1.5 5E-05 26.9 3.3 60 1-60 199-263 (440)
134 1njg_A DNA polymerase III subu 81.1 1.9 6.4E-05 23.2 3.2 39 1-40 131-169 (250)
135 1nij_A Hypothetical protein YJ 80.6 2.6 8.8E-05 24.6 3.8 25 15-39 167-191 (318)
136 1fnn_A CDC6P, cell division co 79.4 0.76 2.6E-05 27.0 1.3 37 1-38 130-170 (389)
137 1g5t_A COB(I)alamin adenosyltr 77.1 0.6 2.1E-05 25.8 0.4 51 1-51 125-179 (196)
138 2px0_A Flagellar biosynthesis 75.7 0.45 1.5E-05 27.7 -0.4 54 1-56 187-246 (296)
139 2xau_A PRE-mRNA-splicing facto 73.1 3.1 0.00011 27.5 2.9 40 1-40 213-255 (773)
140 2e87_A Hypothetical protein PH 73.0 6.3 0.00022 23.3 4.0 38 1-38 253-293 (357)
141 3e70_C DPA, signal recognition 70.8 0.84 2.9E-05 27.1 -0.0 54 2-55 242-307 (328)
142 1sxj_D Activator 1 41 kDa subu 66.5 9.4 0.00032 22.0 3.8 39 1-40 138-176 (353)
143 1rj9_A FTSY, signal recognitio 58.3 3.3 0.00011 24.2 0.9 33 8-40 227-261 (304)
144 2qby_A CDC6 homolog 1, cell di 57.8 1.1 3.8E-05 26.1 -1.2 39 1-39 133-175 (386)
145 3llm_A ATP-dependent RNA helic 53.4 15 0.0005 20.2 2.9 14 1-14 181-195 (235)
146 1vec_A ATP-dependent RNA helic 53.0 5.4 0.00018 21.2 1.1 23 1-23 151-173 (206)
147 2chg_A Replication factor C sm 49.7 27 0.00092 18.2 3.8 37 1-38 107-143 (226)
148 2ce7_A Cell division protein F 49.6 12 0.00043 23.4 2.4 40 1-40 113-167 (476)
149 3r7a_A Phosphoglycerate mutase 48.8 12 0.0004 20.6 2.1 13 25-37 172-184 (237)
150 4dgh_A Sulfate permease family 48.3 25 0.00084 17.4 3.6 32 6-37 27-59 (130)
151 2gxq_A Heat resistant RNA depe 44.2 3.5 0.00012 21.9 -0.6 22 1-22 149-170 (207)
152 1qhf_A Protein (phosphoglycera 43.8 13 0.00045 20.5 1.8 12 26-37 172-183 (240)
153 1t6n_A Probable ATP-dependent 43.8 12 0.0004 20.1 1.5 23 1-23 163-186 (220)
154 1e9r_A Conjugal transfer prote 43.6 5.9 0.0002 24.0 0.3 37 1-40 284-321 (437)
155 1jr3_A DNA polymerase III subu 42.2 29 0.00098 20.2 3.1 38 1-39 124-161 (373)
156 3mbk_A Ubiquitin-associated an 41.5 21 0.0007 20.0 2.4 12 26-37 184-195 (264)
157 1a5t_A Delta prime, HOLB; zinc 41.1 26 0.00088 20.5 2.8 39 1-40 113-151 (334)
158 2w58_A DNAI, primosome compone 39.8 7.5 0.00026 20.6 0.3 36 1-36 120-158 (202)
159 2b8t_A Thymidine kinase; deoxy 39.5 41 0.0014 18.7 3.3 45 1-49 94-149 (223)
160 3iuy_A Probable ATP-dependent 39.3 5.9 0.0002 21.5 -0.1 24 1-24 172-195 (228)
161 3u61_B DNA polymerase accessor 39.2 34 0.0012 19.6 3.1 40 1-40 110-149 (324)
162 4dgf_A Sulfate transporter sul 39.2 35 0.0012 17.0 2.8 30 5-34 61-91 (135)
163 3oiz_A Antisigma-factor antago 39.0 26 0.00088 16.6 2.2 31 4-34 52-83 (99)
164 3bor_A Human initiation factor 38.8 5.6 0.00019 21.9 -0.3 23 1-23 178-200 (237)
165 2qni_A AGR_C_517P, uncharacter 37.8 16 0.00054 20.1 1.5 11 27-37 155-165 (219)
166 3llo_A Prestin; STAS domain, c 37.4 41 0.0014 16.8 3.6 31 4-34 72-103 (143)
167 2jeo_A Uridine-cytidine kinase 36.8 15 0.0005 20.4 1.3 31 1-40 138-168 (245)
168 1e58_A Phosphoglycerate mutase 36.8 20 0.00067 19.9 1.8 12 26-37 174-185 (249)
169 3n70_A Transport activator; si 36.7 42 0.0014 16.8 3.1 33 2-35 82-114 (145)
170 3c7t_A Ecdysteroid-phosphate p 36.7 21 0.00073 20.0 1.9 12 26-37 183-194 (263)
171 3m0z_A Putative aldolase; MCSG 36.6 18 0.0006 20.8 1.5 21 4-24 191-211 (249)
172 1qde_A EIF4A, translation init 36.5 6.3 0.00021 21.3 -0.3 24 1-24 160-183 (224)
173 2gno_A DNA polymerase III, gam 36.2 34 0.0012 19.9 2.8 39 1-40 87-125 (305)
174 2pl3_A Probable ATP-dependent 35.6 7.1 0.00024 21.3 -0.2 24 1-24 176-199 (236)
175 3m6y_A 4-hydroxy-2-oxoglutarat 35.1 18 0.00063 21.0 1.4 21 4-24 214-234 (275)
176 3pkz_A Recombinase SIN; small 35.0 15 0.00052 18.2 1.0 29 2-30 31-59 (124)
177 2qag_B Septin-6, protein NEDD5 34.3 15 0.0005 22.8 1.0 35 1-35 181-217 (427)
178 4fgs_A Probable dehydrogenase 33.4 18 0.00061 20.9 1.2 29 6-34 8-36 (273)
179 4a5z_A MITD1, MIT domain-conta 33.3 16 0.00056 19.7 1.0 23 43-65 113-135 (163)
180 3ny7_A YCHM protein, sulfate t 33.2 46 0.0016 16.2 3.4 18 7-24 57-74 (118)
181 1q0u_A Bstdead; DEAD protein, 32.1 7.8 0.00027 20.9 -0.4 22 1-22 155-176 (219)
182 2ymb_A MITD1, MIT domain-conta 31.5 18 0.0006 21.0 1.0 25 43-67 201-225 (257)
183 4gdi_A Neuraminidase; influenz 31.2 71 0.0024 19.6 3.5 30 27-56 157-186 (373)
184 2oxc_A Probable ATP-dependent 31.0 14 0.00049 20.1 0.6 24 1-24 171-195 (230)
185 2lse_A Four helix bundle prote 36.3 11 0.00037 17.6 0.0 21 1-21 15-35 (101)
186 3d8h_A Glycolytic phosphoglyce 29.6 30 0.001 19.5 1.8 12 26-37 192-203 (267)
187 1rii_A 2,3-bisphosphoglycerate 29.3 31 0.001 19.6 1.8 12 26-37 174-185 (265)
188 2hhj_A Bisphosphoglycerate mut 29.0 23 0.0008 19.9 1.2 12 26-37 179-190 (267)
189 3d4i_A STS-2 protein; PGM, 2H- 28.8 29 0.00098 19.5 1.6 12 26-37 193-204 (273)
190 2iut_A DNA translocase FTSK; n 28.6 54 0.0018 21.3 2.9 38 1-38 348-389 (574)
191 1s2m_A Putative ATP-dependent 28.6 28 0.00097 20.4 1.6 22 1-22 168-189 (400)
192 2uvp_A HOBA; hypothetical prot 28.3 66 0.0023 17.7 2.8 21 17-37 43-63 (186)
193 2orw_A Thymidine kinase; TMTK, 27.9 73 0.0025 16.8 3.1 34 1-38 81-114 (184)
194 3kkk_A Phosphoglycerate mutase 27.7 81 0.0028 17.5 3.3 12 26-37 183-194 (258)
195 1h2e_A Phosphatase, YHFR; hydr 27.5 47 0.0016 17.8 2.3 12 26-37 141-152 (207)
196 2orv_A Thymidine kinase; TP4A 27.4 91 0.0031 17.7 5.2 44 1-49 95-149 (234)
197 3syl_A Protein CBBX; photosynt 27.2 89 0.003 17.6 3.7 35 1-35 135-177 (309)
198 1v37_A Phosphoglycerate mutase 27.1 74 0.0025 16.6 3.3 22 15-38 115-136 (177)
199 1l8q_A Chromosomal replication 27.1 94 0.0032 17.8 4.0 37 1-37 103-141 (324)
200 3fe2_A Probable ATP-dependent 26.8 7.8 0.00027 21.3 -1.0 22 1-22 181-202 (242)
201 1iqp_A RFCS; clamp loader, ext 26.8 91 0.0031 17.5 3.7 38 1-39 115-152 (327)
202 2a6p_A Possible phosphoglycera 26.6 40 0.0014 18.2 1.9 12 26-37 143-154 (208)
203 3ber_A Probable ATP-dependent 26.3 10 0.00035 21.1 -0.5 10 1-10 191-200 (249)
204 2j0s_A ATP-dependent RNA helic 26.1 16 0.00056 21.5 0.3 32 1-32 184-215 (410)
205 1wp9_A ATP-dependent RNA helic 25.9 46 0.0016 19.7 2.2 26 1-26 130-155 (494)
206 1jjv_A Dephospho-COA kinase; P 25.5 82 0.0028 16.6 4.5 25 27-51 105-132 (206)
207 1fzt_A Phosphoglycerate mutase 25.4 69 0.0024 17.2 2.7 12 26-37 154-165 (211)
208 1sxj_C Activator 1 40 kDa subu 25.3 1.1E+02 0.0036 17.8 4.0 37 1-38 115-151 (340)
209 1sxj_B Activator 1 37 kDa subu 25.3 68 0.0023 18.1 2.8 38 1-39 112-149 (323)
210 2v1u_A Cell division control p 24.9 20 0.00069 20.8 0.5 38 1-38 135-178 (387)
211 2f9l_A RAB11B, member RAS onco 24.9 21 0.00072 18.8 0.5 17 6-22 147-163 (199)
212 1jr3_D DNA polymerase III, del 24.9 43 0.0015 19.4 1.9 35 2-36 82-116 (343)
213 1xti_A Probable ATP-dependent 24.5 56 0.0019 19.0 2.4 32 1-32 157-189 (391)
214 3gp3_A 2,3-bisphosphoglycerate 24.3 32 0.0011 19.1 1.2 12 26-37 181-192 (257)
215 1hv8_A Putative ATP-dependent 24.2 18 0.0006 20.8 0.2 34 1-34 152-185 (367)
216 1odf_A YGR205W, hypothetical 3 24.1 11 0.00037 21.9 -0.8 12 1-12 157-168 (290)
217 3hjg_A Putative alpha-ribazole 24.0 39 0.0014 18.3 1.6 11 27-37 141-151 (213)
218 2vo9_A EAD500, L-alanyl-D-glut 23.9 94 0.0032 16.7 3.8 28 7-34 31-59 (179)
219 4eo9_A 2,3-bisphosphoglycerate 23.9 44 0.0015 18.8 1.8 12 26-37 197-208 (268)
220 3f3k_A Uncharacterized protein 23.8 37 0.0013 19.1 1.4 11 27-37 168-178 (265)
221 4emb_A 2,3-bisphosphoglycerate 23.7 33 0.0011 19.4 1.2 12 26-37 199-210 (274)
222 4b7j_A Neuraminidase; hydrolas 23.4 1E+02 0.0036 19.6 3.4 31 27-57 236-266 (469)
223 3ly5_A ATP-dependent RNA helic 22.4 18 0.00061 20.3 -0.1 10 1-10 206-215 (262)
224 2dy1_A Elongation factor G; tr 22.0 1.1E+02 0.0038 20.0 3.5 36 1-40 104-139 (665)
225 3h4m_A Proteasome-activating n 21.9 61 0.0021 18.0 2.1 31 10-40 134-169 (285)
226 1v5w_A DMC1, meiotic recombina 21.2 49 0.0017 19.5 1.6 11 27-37 264-274 (343)
227 3b6e_A Interferon-induced heli 21.0 86 0.0029 16.4 2.5 12 1-12 167-178 (216)
228 1xp2_A EAD500, PLY500, L-alany 20.9 1.2E+02 0.004 16.6 3.8 25 7-31 31-56 (179)
229 3aez_A Pantothenate kinase; tr 20.8 20 0.00068 21.0 -0.1 44 1-51 199-244 (312)
230 1u94_A RECA protein, recombina 20.5 1.1E+02 0.0036 18.4 3.0 11 27-37 190-200 (356)
231 1yfk_A Phosphoglycerate mutase 20.1 1.3E+02 0.0044 16.8 3.4 12 26-37 177-188 (262)
232 3ff2_A Uncharacterized cystati 20.1 82 0.0028 14.8 2.1 13 44-56 100-112 (117)
No 1
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.82 E-value=3.8e-20 Score=108.16 Aligned_cols=75 Identities=44% Similarity=0.689 Sum_probs=67.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
|||||||+||+.+...+.+.+.....++|+|+|+|+++.+..||+|++|++|++++.|++.++....+.+..++.
T Consensus 213 lLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~ 287 (306)
T 3nh6_A 213 LLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQ 287 (306)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHH
Confidence 689999999999999999999888778999999999999977999999999999999999998876666666553
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.80 E-value=5.5e-20 Score=122.15 Aligned_cols=76 Identities=50% Similarity=0.753 Sum_probs=64.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
|||||||+||+.++..+++.+++..+++|+|+|+|+++.+..||+|++|++|++++.|++.++.+..+.++.+++.
T Consensus 1240 iLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~ 1315 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQK 1315 (1321)
T ss_dssp EEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC---------
T ss_pred EEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 6899999999999999999999888899999999999999999999999999999999999999888888887653
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.79 E-value=6.8e-19 Score=109.63 Aligned_cols=76 Identities=49% Similarity=0.700 Sum_probs=68.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
+||||||+||+.++..+.+.+....+++|+|+++|+++.+..||++++|++|++++.|++.++....+.+..++..
T Consensus 500 llDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~ 575 (578)
T 4a82_A 500 ILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 575 (578)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTT
T ss_pred EEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 5899999999999999999998887899999999999998779999999999999999999998877777776643
No 4
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.78 E-value=1.5e-18 Score=98.84 Aligned_cols=74 Identities=51% Similarity=0.779 Sum_probs=63.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc-cchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK-KGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 74 (79)
+|||||++||+..+..+.+.+.....++|+|++||+++.+..||++++|++|+++..|++.++... ...+..++
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~ 242 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHH
Confidence 589999999999999999999877668999999999998866999999999999999999888765 34444444
No 5
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.78 E-value=1.5e-18 Score=99.51 Aligned_cols=74 Identities=45% Similarity=0.672 Sum_probs=63.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+|||||++||+..+..+.+.+....+++|+|++||++..+..||++++|++|+++..|++.++......+...+
T Consensus 178 lLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 251 (260)
T 2ghi_A 178 IFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMW 251 (260)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHH
Confidence 58999999999999999999988767899999999999886699999999999999999888765444444443
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=7.2e-19 Score=109.73 Aligned_cols=75 Identities=29% Similarity=0.446 Sum_probs=67.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.++..+.+.+....+++|+|+++|+++.+..||++++|++|++++.|++.++....+.+..++.
T Consensus 502 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 576 (587)
T 3qf4_A 502 ILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYE 576 (587)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 589999999999999999999888789999999999999878999999999999999999998876666665543
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.77 E-value=8.1e-19 Score=101.33 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=59.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+..+. + +.|+|++||+++.+.. ||++++|++|+++..|++.++...
T Consensus 166 lLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 5899999999999999999988765 3 8999999999999976 999999999999999999887653
No 8
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=9.3e-19 Score=109.39 Aligned_cols=75 Identities=45% Similarity=0.769 Sum_probs=67.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.++..+.+.+....+++|+|+++|+++.+..||++++|++|++++.|++.++....+.+..++.
T Consensus 514 llDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 588 (598)
T 3qf4_B 514 ILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFT 588 (598)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHH
Confidence 589999999999999999999888789999999999999877999999999999999999999877666666653
No 9
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.77 E-value=1.7e-18 Score=99.76 Aligned_cols=74 Identities=32% Similarity=0.484 Sum_probs=63.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+|||||++||+..+..+.+.+..... ++|+|++||+++.+..||++++|++|+++..|++.++......+..++
T Consensus 179 lLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 58999999999999999999988753 899999999999886699999999999999999888766555555554
No 10
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.77 E-value=2.3e-18 Score=107.34 Aligned_cols=75 Identities=52% Similarity=0.684 Sum_probs=67.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.++..+.+.+.+..+++|+|+++|+++.+..||++++|++|++++.|++.++....+.+..++.
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 577 (582)
T 3b60_A 503 ILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 577 (582)
T ss_dssp EEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHH
Confidence 589999999999999999999887779999999999998877999999999999999999998776666666654
No 11
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.76 E-value=2.8e-18 Score=106.94 Aligned_cols=75 Identities=49% Similarity=0.701 Sum_probs=67.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
+||||||+||+.++..+.+.+....+++|+|+++|+++.+..||++++|++|++++.|++.++....+.+..++.
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 577 (582)
T 3b5x_A 503 ILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHR 577 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 589999999999999999999887779999999999998877999999999999999999998876666666654
No 12
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.75 E-value=4.3e-18 Score=113.03 Aligned_cols=76 Identities=55% Similarity=0.819 Sum_probs=69.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 76 (79)
|||||||+||+.++..+.+.+.....++|+|+|+|+++.+..||++++|++|++++.|++.++....+.++.+++.
T Consensus 1194 iLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~ 1269 (1284)
T 3g5u_A 1194 LLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSV 1269 (1284)
T ss_dssp EEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 6899999999999999999998877799999999999999779999999999999999999998888888887653
No 13
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.75 E-value=1.2e-18 Score=103.73 Aligned_cols=68 Identities=22% Similarity=0.399 Sum_probs=60.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG 68 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 68 (79)
+||||||+||+..+..+.+++..+. .+.|+|++||+++.+.. ||++++|++|++++.|++.++...+.
T Consensus 186 LlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~ 256 (366)
T 3tui_C 186 LCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 256 (366)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCC
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 5899999999999999999998774 38999999999999976 99999999999999999988876543
No 14
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.75 E-value=2.3e-18 Score=114.52 Aligned_cols=75 Identities=52% Similarity=0.837 Sum_probs=69.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 75 (79)
|||||||+||+.++..+.+.+....+++|+|+|+|+++.+..||+|++|++|++++.|++.++....+.+..++.
T Consensus 577 iLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~ 651 (1321)
T 4f4c_A 577 LLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVT 651 (1321)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHH
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHH
Confidence 689999999999999999999988899999999999999999999999999999999999999887777776653
No 15
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=96.34 Aligned_cols=74 Identities=28% Similarity=0.474 Sum_probs=61.8
Q ss_pred CCcccccCCCHHHHHHHHHHHH---HhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALE---SACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~---~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+|||||++||+..+..+.+.+. ....++|+|++||+++.+..||++++|++|+++..|++.++......+..++
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 226 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHH
Confidence 5899999999999999888874 3345889999999999886699999999999999999988766555555544
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.74 E-value=2.2e-18 Score=99.13 Aligned_cols=65 Identities=25% Similarity=0.282 Sum_probs=58.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+..+.+ +.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 170 llDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 170 FLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 58999999999999999999987743 5799999999999975 99999999999999999888754
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.74 E-value=3.6e-18 Score=102.21 Aligned_cols=70 Identities=24% Similarity=0.335 Sum_probs=61.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY 70 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 70 (79)
+||||||+||+..+..+...+.++. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+...
T Consensus 156 LLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~ 228 (381)
T 3rlf_A 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 228 (381)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBH
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccH
Confidence 5899999999999999999888764 3 8999999999999866 9999999999999999999987655543
No 18
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.74 E-value=5.6e-18 Score=100.76 Aligned_cols=70 Identities=20% Similarity=0.352 Sum_probs=59.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh-c-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccchH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA-C-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY 70 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~-~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 70 (79)
+||||||+||+..+..+...+... . .+.|+|++||+++++.. ||++++|++|+++..|++.++...+...
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~ 233 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADL 233 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccH
Confidence 589999999999999888755543 3 48999999999999866 9999999999999999999987665543
No 19
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.73 E-value=7.6e-18 Score=101.11 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=63.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYW 71 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~ 71 (79)
+||||||+||+..+..+...+.+...+.|+|++||+++.+..||++++|++|+++..|++.++...+...+
T Consensus 178 LLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~ 248 (390)
T 3gd7_A 178 LLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248 (390)
T ss_dssp EEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchH
Confidence 58999999999999999999987767899999999998776799999999999999999999887665543
No 20
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.73 E-value=6.6e-18 Score=97.03 Aligned_cols=67 Identities=24% Similarity=0.428 Sum_probs=59.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
+|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..|++.++...+
T Consensus 182 lLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 182 LFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 5899999999999999999988764 48999999999999875 9999999999999999988876543
No 21
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.73 E-value=8.2e-18 Score=96.27 Aligned_cols=62 Identities=26% Similarity=0.277 Sum_probs=56.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS 62 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~ 62 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. ||++++|++|+++..|++.+
T Consensus 176 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 176 VMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 5899999999999999999988764 48999999999999865 99999999999999888877
No 22
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.73 E-value=5.6e-18 Score=97.23 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=59.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.... ++.|+|++||+++.+.. ||++++|++|+++..|++.++...
T Consensus 176 lLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 176 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 5899999999999999999988764 48999999999999865 999999999999999998887654
No 23
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.73 E-value=1.5e-18 Score=98.60 Aligned_cols=74 Identities=46% Similarity=0.631 Sum_probs=62.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
+|||||++||+..+..+.+.+.....++|+|++||+++.+..||++++|++|+++..|++.++......+..++
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 58999999999999999888887667899999999998876699999999999999999888765444444444
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.72 E-value=7e-18 Score=95.83 Aligned_cols=66 Identities=26% Similarity=0.334 Sum_probs=58.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+.+.... + +.|+|++||+++.+.. ||++++|++|+++..|++.++...
T Consensus 149 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 149 LLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp EEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 5899999999999999999988764 3 8999999999998865 999999999999999998887643
No 25
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.72 E-value=6.3e-18 Score=95.72 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=54.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCccccccCCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+..+. + +.|+|++||+++.+..||++++|++|+++..++..++
T Consensus 168 llDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 5899999999999999999998774 3 8999999999996655999999999999988766553
No 26
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.71 E-value=1.8e-17 Score=95.29 Aligned_cols=65 Identities=31% Similarity=0.381 Sum_probs=58.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.... .+.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 5899999999999999999988774 48999999999999876 99999999999998888777654
No 27
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.71 E-value=1.2e-17 Score=94.87 Aligned_cols=65 Identities=25% Similarity=0.243 Sum_probs=58.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.... .++|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 5899999999999999999988775 58999999999988865 99999999999999888877754
No 28
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.71 E-value=8e-18 Score=105.12 Aligned_cols=74 Identities=53% Similarity=0.778 Sum_probs=58.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhc-cchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK-KGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 74 (79)
+||||||+||+.++..+.+.+....+++|+|+++|+++.+..||++++|++|++++.|++.++... ...+..++
T Consensus 506 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 580 (595)
T 2yl4_A 506 LLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580 (595)
T ss_dssp EEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C------
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHH
Confidence 589999999999999999999887778999999999998877999999999999999998887653 44454443
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.71 E-value=3.8e-17 Score=93.98 Aligned_cols=64 Identities=23% Similarity=0.362 Sum_probs=56.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc--CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+..+..+.+.+....+ ++|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus 187 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 187 ILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 58999999999999999999988754 8999999999998854 8999999999999988877653
No 30
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.71 E-value=1.8e-17 Score=98.73 Aligned_cols=69 Identities=25% Similarity=0.288 Sum_probs=60.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||||+||+..+..+...+..+. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+..
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~ 227 (362)
T 2it1_A 156 LLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227 (362)
T ss_dssp EEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred EEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 5899999999999999999888764 3 8999999999998865 999999999999999999988765543
No 31
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.71 E-value=2e-17 Score=98.45 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=60.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||||+||+..+..+...+.++. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+..
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 227 (359)
T 2yyz_A 156 LFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN 227 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 5899999999999999999888764 3 8999999999998865 999999999999999999988765544
No 32
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.71 E-value=2.1e-17 Score=98.20 Aligned_cols=68 Identities=21% Similarity=0.388 Sum_probs=60.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG 68 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 68 (79)
+||||||+||+..+..+...+.++. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+.
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 5899999999999999999888764 3 8999999999999865 99999999999999999988876543
No 33
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.71 E-value=2e-17 Score=98.81 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=60.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||||+||+..+..+...+.++. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+..
T Consensus 162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 233 (372)
T 1g29_1 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN 233 (372)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCccc
Confidence 5899999999999999999888764 3 8999999999999865 999999999999999999988765544
No 34
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.70 E-value=1.8e-17 Score=94.94 Aligned_cols=64 Identities=30% Similarity=0.409 Sum_probs=57.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+..+..+.+.+..+. .+.|+|++||+++.+.. ||++++|++|+++..|++.++.
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 5899999999999999999988764 48999999999999876 9999999999999988887764
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.70 E-value=1.4e-17 Score=93.99 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=57.6
Q ss_pred CCcccccCCCHHHHHHHHHH-HHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchH
Q psy10474 1 MFRLFGSALDNESEKLVQAA-LESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHY 70 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~-~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 70 (79)
+|||||++||+..+..+.+. +.....++|+|++||+++.+..||++++|++|+++..|++.++......+
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 223 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF 223 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CH
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence 58999999999999998886 34444588999999999887669999999999999999988876543333
No 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.70 E-value=1.8e-17 Score=98.34 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=60.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||||+||+..+..+...+.++. .+.|+|++||+++++.. ||++++|++|++...|++.++...+..
T Consensus 150 LLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~ 221 (348)
T 3d31_A 150 LLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVE 221 (348)
T ss_dssp EEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCT
T ss_pred EEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCccc
Confidence 5899999999999999999888764 38999999999998865 999999999999999999988765443
No 37
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.70 E-value=2.7e-17 Score=98.23 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=60.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||||+||+..+..+...+..+. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+..
T Consensus 164 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 164 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 5899999999999999999888764 3 8999999999998865 999999999999999999988765544
No 38
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.70 E-value=7.5e-17 Score=92.01 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=55.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc--CCEEEEEeCceEeeecChh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN--ADLIVVLQAGQIVEMGNHK 61 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~--~d~v~~l~~G~i~~~~~~~ 61 (79)
+|||||++||+..+..+.+.+.... .++|+|++||+++.+.. ||++++|++|+++..|++.
T Consensus 166 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 166 VLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp EEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 5899999999999999999998875 48999999999998865 4999999999999988876
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.69 E-value=2e-17 Score=98.24 Aligned_cols=69 Identities=23% Similarity=0.324 Sum_probs=60.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhhccch
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~~ 69 (79)
+||||||+||+..+..+...+.++. + +.|+|++||+++++.. ||++++|++|+++..|++.++...+..
T Consensus 163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 234 (353)
T 1oxx_K 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234 (353)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSS
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 5899999999999999999888764 3 8999999999998865 999999999999999999988765443
No 40
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.69 E-value=3.2e-17 Score=108.93 Aligned_cols=74 Identities=54% Similarity=0.775 Sum_probs=66.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhhccchHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 74 (79)
|||||||+||+.+...+.+.+....+++|+|+|+|+++.+..||++++|++|++++.|++.++....+.+..++
T Consensus 549 iLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~ 622 (1284)
T 3g5u_A 549 LLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622 (1284)
T ss_dssp EEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHH
Confidence 68999999999999999999988778999999999999998899999999999999999999887666655543
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.69 E-value=2.3e-17 Score=94.12 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=57.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.... ++.|+|++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 156 LLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 5899999999999999999988774 48999999999999855 99999999999999888877653
No 42
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.68 E-value=3.4e-17 Score=94.71 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=57.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEE--EEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTV--LMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tv--i~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+..... +.|+ |++||+++.+.. ||++++|++|+++..|++.++..
T Consensus 184 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 184 ILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 58999999999999999998887644 8899 999999999865 99999999999999888877643
No 43
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.68 E-value=4.3e-17 Score=91.72 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=52.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~ 59 (79)
+|||||++||+..+..+.+.+.... ++.|+|++||+++.+..||++++|++|+++..|+
T Consensus 163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 5899999999999999999888764 4899999999998875599999999999988764
No 44
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.67 E-value=1.7e-16 Score=91.14 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=55.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CC-EEEEEeCceEeeecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-AD-LIVVLQAGQIVEMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d-~v~~l~~G~i~~~~~~~~~~ 64 (79)
+|||||++||+..+..+.+.+..... |+|++||+++.+.. || ++++|++|+++..|++.++.
T Consensus 151 lLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 151 GLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred EEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 58999999999999999999987754 99999999998865 99 99999999999999887765
No 45
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.66 E-value=7.7e-17 Score=92.14 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=56.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+.... + +.|+|++||+++.+.. ||++++|++|+ +..|++.++..
T Consensus 151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 5899999999999999999988764 4 8999999999999865 99999999999 88888777643
No 46
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.65 E-value=2.8e-16 Score=99.22 Aligned_cols=66 Identities=27% Similarity=0.415 Sum_probs=59.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+.....+.+++..+. .+.|+|+|||+++.+..||++++| ++|+++..|++.++...
T Consensus 569 llDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 569 ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 5899999999999999999988764 489999999999988669999999 89999999999887643
No 47
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.65 E-value=3.1e-16 Score=101.67 Aligned_cols=70 Identities=27% Similarity=0.424 Sum_probs=62.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhccchH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKGHY 70 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~~~~ 70 (79)
||||||++||+.....+.+.+..+. .|.|+|+|+|+++.+..||++++| ++|++++.|++.++...+..+
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy 907 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence 6899999999999999999988774 489999999999988779999999 899999999999988765443
No 48
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.64 E-value=1.8e-16 Score=92.14 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCcccccCCCHHHHHHHHHHH-HHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAAL-ESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~-~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+ .....++|+|++||+++.+..||++++|++|+++..|++.++..
T Consensus 182 lLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 182 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 589999999999999888863 34445889999999998876699999999999999998887653
No 49
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.60 E-value=7.8e-16 Score=97.22 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=59.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKG 68 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~~ 68 (79)
+|||||++||+.....+.+.+..+. .+.|+|+|||+++.+..||++++| ++|+++..|++.++.....
T Consensus 227 lLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 227 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 5899999999999999999888764 489999999999977669999999 8999999999988866543
No 50
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.56 E-value=4.8e-15 Score=96.21 Aligned_cols=67 Identities=22% Similarity=0.343 Sum_probs=60.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~ 67 (79)
||||||++||+.....+.+.+..+.. |.|+|+|+|+++.+..+|+++.| .+|+++..|++.++....
T Consensus 489 lLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 489 VLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 58999999999999999999988764 89999999999888779999999 899999999999886543
No 51
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.54 E-value=6.1e-15 Score=87.88 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=49.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEeCceEee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 56 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 56 (79)
+|||||++||+.....+...+..+. .+.|+|+|||+++....+|++++|++|+++.
T Consensus 308 llDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 308 FIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEETTEEC-
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence 5899999999999999999988775 4899999999999866699999999999864
No 52
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.54 E-value=8.8e-15 Score=94.37 Aligned_cols=67 Identities=18% Similarity=0.328 Sum_probs=59.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~ 67 (79)
||||||++||+.....+.+++..+. .|.|+|+++|+++.+..||++++| ++|+++..|++.++....
T Consensus 756 ILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 756 VLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 6999999999999999999888764 589999999999999669999999 689999999998886543
No 53
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.54 E-value=1.3e-14 Score=94.47 Aligned_cols=67 Identities=28% Similarity=0.425 Sum_probs=59.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~ 67 (79)
||||||++||+.....+.+.+..+. .|.|+|+++|+++.+..||++++| ++|+++..|++.++....
T Consensus 871 ILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~ 944 (972)
T 2r6f_A 871 ILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK 944 (972)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCT
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCc
Confidence 6999999999999999999888764 589999999999988669999999 689999999998876543
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.5e-15 Score=93.65 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=58.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC--ceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~~~~~~~~~~ 66 (79)
+|||||++||+..+..+.+++.++. .+.|+|++||+++.+.. ||++++|++ |++...|++.++...
T Consensus 490 lLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 490 LIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp EECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 5899999999999999999988763 38999999999999976 999999986 888888998887653
No 55
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.53 E-value=2e-14 Score=93.71 Aligned_cols=67 Identities=22% Similarity=0.386 Sum_probs=59.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~~ 67 (79)
||||||++||+.....+.+++..+. .+.|+|+++|+++.+..||++++| ++|+++..|++.++....
T Consensus 889 ILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~~ 962 (993)
T 2ygr_A 889 ILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVP 962 (993)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHHCT
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHhCC
Confidence 6999999999999999999888764 589999999999988669999999 689999999998876543
No 56
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.51 E-value=9e-15 Score=95.14 Aligned_cols=65 Identities=20% Similarity=0.379 Sum_probs=58.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~ 65 (79)
||||||++||+.....+...+..+.. |.|+|+|+|+++.+..+|+++.| ++|+++..|++.++..
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 69999999999999999988887764 99999999999988779999999 7899999999888754
No 57
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.51 E-value=1.2e-14 Score=94.72 Aligned_cols=66 Identities=24% Similarity=0.379 Sum_probs=58.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~ 66 (79)
||||||++||+.....+...+..+. .|.|+|+|+|+++.+..+|+++.| ++|+++..|++.++...
T Consensus 546 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 546 VLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 6999999999999999988888775 499999999999988779999999 68999999999888654
No 58
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.50 E-value=5.2e-14 Score=84.49 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEE----eCceEeee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL----QAGQIVEM 57 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l----~~G~i~~~ 57 (79)
||||||++||+.....+.+.+..+.++.++|+|||++..+..||+++++ ++|+++..
T Consensus 320 lLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 320 VFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETTEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCCceEEE
Confidence 6899999999999999999998887789999999999877669999999 99988654
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.50 E-value=1.2e-14 Score=90.26 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=55.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC--ceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~~~~~~~~~ 65 (79)
||||||++||+..+..+.+.+..+. .+.|+|++||+++++.. ||++++|++ |++...|++.++..
T Consensus 424 lLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 424 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 6899999999999999999998764 38999999999999976 999999985 67777788766543
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.49 E-value=3.5e-14 Score=91.63 Aligned_cols=66 Identities=21% Similarity=0.378 Sum_probs=58.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEE------eCceEeeecChhHHhhc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAK 66 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l------~~G~i~~~~~~~~~~~~ 66 (79)
||||||++||+.....+...+..+.. |.|+|+|+|+++.+..+|+++.| ++|+++..|++.++...
T Consensus 404 ILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 404 VLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred EeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 69999999999999999998887754 99999999999977679999999 78999999999887654
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.48 E-value=6.2e-14 Score=91.54 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=55.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEe-eecChhHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV-EMGNHKSLL 64 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~ 64 (79)
+|||||++||+.....+.+.+.. .+.|+|++||++..+.. ||++++|++|+++ ..|++.++.
T Consensus 571 LLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 571 LLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 58999999999999999999887 68999999999999976 9999999999996 578887764
No 62
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.47 E-value=1.8e-13 Score=72.87 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=44.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEe--Cce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ--AGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~--~G~ 53 (79)
+|||||++||+.....+.+.+.... .+.|+|++||++.....||++++++ +|.
T Consensus 86 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 86 ILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp EEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEETTE
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEEcCCCe
Confidence 5899999999999999999988764 4889999999995444599999994 454
No 63
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.47 E-value=4e-14 Score=88.90 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=55.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC--ceEeeecChhHHhh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEMGNHKSLLA 65 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~~~~~~~~~ 65 (79)
+|||||++||+..+..+.+.+..+. .+.|+|+++|++..+.. ||++++|++ |.+...|++.++..
T Consensus 494 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 5899999999999999999998764 48999999999999976 999999985 66667787766543
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.42 E-value=1.2e-13 Score=85.71 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=47.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~ 53 (79)
+|||||++||+.....+.+.+..+..+.|+|+|+|+++++.. ||+++++++|.
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 589999999999999999999888679999999999999866 99999998653
No 65
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.2e-13 Score=85.80 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=50.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC--ceEeeecCh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA--GQIVEMGNH 60 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~--G~i~~~~~~ 60 (79)
+|||||++||+..+..+.+.+.++. .+.|+|+|||+++.+.. ||++++|++ |.....+.+
T Consensus 408 lLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~ 472 (538)
T 3ozx_A 408 VLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSP 472 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCC
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCCh
Confidence 5899999999999999999998764 48999999999999976 999999986 334444444
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.9e-13 Score=85.07 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=47.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~ 53 (79)
+|||||++||+.....+...+..+.. +.|+|+++|+++++.. +|++++|++|.
T Consensus 244 llDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 244 MFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred EEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 58999999999999999999988754 8999999999999976 99999998754
No 67
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.39 E-value=1.4e-13 Score=85.45 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=46.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G 52 (79)
||||||++||+..+..+.+.+..+. .+.|+|+++|++.++.. ||++++|++|
T Consensus 181 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 181 FFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 6899999999999999998888764 48999999999999876 9999999754
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.37 E-value=2.1e-13 Score=89.14 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=48.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc-CCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~~~ 59 (79)
||||||++||+.....+...+... +.|+|++||+++++.. ||++++|++|+++..|.
T Consensus 924 LLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 924 VLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred EEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 689999999999988888888654 6799999999999865 99999999999876553
No 69
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.36 E-value=4.2e-13 Score=84.35 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=46.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G 52 (79)
+|||||++||+..+..+.+.+..+. .+.|+|+++|++..+.. +|++++|+++
T Consensus 251 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 5899999999999999999888764 48999999999998866 9999999864
No 70
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.32 E-value=1.1e-13 Score=77.52 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=43.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCcccccc-CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i 54 (79)
+|||||++||+..+..+.+.+.+.. .+.|+|++||+++.+.. +|+++++ .|+|
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 156 VLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 5899999999999999999888765 37899999999999977 6776654 4554
No 71
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.30 E-value=8e-12 Score=73.32 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=46.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEE--EEEeCceEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLI--VVLQAGQIV 55 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v--~~l~~G~i~ 55 (79)
+|||||++||+.....+...+.....+.++|++||++.....||++ +.+.+|...
T Consensus 246 llDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 246 VLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp EEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence 5899999999999999999988876688999999997655569986 777777653
No 72
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.28 E-value=1.7e-12 Score=80.21 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=46.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G 52 (79)
||||||++||+.....+...+..+..+.++|+|||++..+..||+++++.++
T Consensus 422 ilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 422 VFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp EECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 5899999999999999999888776689999999999877679999999654
No 73
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.24 E-value=1.3e-11 Score=67.19 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=46.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEE--eCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL--QAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l--~~G~i 54 (79)
+|||||++||+.....+...+.....+.++|+++|+......+|+++.+ .+|..
T Consensus 91 lLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~s 146 (173)
T 3kta_B 91 LFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGVS 146 (173)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTEE
T ss_pred EECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecCCEE
Confidence 5899999999999999999998887778999999998776679999855 46654
No 74
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.23 E-value=1.7e-11 Score=72.36 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=42.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc-CCCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
+|||||++||+.....+...+.... .+.++|++||+......||+++.+.
T Consensus 277 llDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 277 ILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 5899999999999999988888764 4789999999976555599999885
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.19 E-value=4.8e-11 Score=71.20 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 63 (79)
+|||||++||+..+..+.+.+.... .|+|++|| ++. .+++++++++|++...|++.++
T Consensus 297 LLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 297 LLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEEEETTEEEECCCTTTS
T ss_pred EEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEEEECCEEEecCCHHHH
Confidence 5899999999999999999887764 78889999 444 7899999999999998887654
No 76
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.08 E-value=2.2e-10 Score=68.33 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=43.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+|||||++||+.....+...+.....+.++|++||++.....+|+++++..
T Consensus 310 llDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~k 360 (371)
T 3auy_A 310 ILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKK 360 (371)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEEE
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEEe
Confidence 589999999999999999998876556799999999875455999999973
No 77
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.89 E-value=2.3e-09 Score=64.95 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=43.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
+||||+++||+.....+...+..... +.++|++||+......||+++.+.
T Consensus 360 llDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 360 VLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred EeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 58999999999999999998887653 789999999976666699999886
No 78
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2e-10 Score=70.40 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=47.6
Q ss_pred CCcc-cccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcc------cccc-CCE-----EEEEe-CceEeeecChhHH
Q psy10474 1 MFRL-FGSALDNESEKLVQAALESACKGRTVLMIAHRLS------TVQN-ADL-----IVVLQ-AGQIVEMGNHKSL 63 (79)
Q Consensus 1 ~~de-~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~------~~~~-~d~-----v~~l~-~G~i~~~~~~~~~ 63 (79)
+||| ||++||+. ...+.+++... +.|+|+++|+.. .+.. +|+ +++|+ +|+++ .+++.++
T Consensus 264 lLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 264 IVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp EEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred EEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 5899 99999999 66666666553 678999999988 5544 898 99999 99998 7877665
No 79
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.87 E-value=6.7e-11 Score=63.92 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=34.6
Q ss_pred CCcccccCCCHH----------------HHHHHHHHHHHhc-CCCEEEEEccCccccccCCE
Q psy10474 1 MFRLFGSALDNE----------------SEKLVQAALESAC-KGRTVLMIAHRLSTVQNADL 45 (79)
Q Consensus 1 ~~de~~s~lD~~----------------~~~~~~~~~~~~~-~~~tvi~vtH~~~~~~~~d~ 45 (79)
+|||||++||+. ....+.+.+.... +|.|+|+++|+++.+..+++
T Consensus 106 llDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~ 167 (171)
T 4gp7_A 106 VFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVF 167 (171)
T ss_dssp EECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEE
T ss_pred EEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhh
Confidence 589999999999 4466666665443 48999999999988855433
No 80
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.85 E-value=4.5e-10 Score=73.53 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=46.7
Q ss_pred CCcccccCCCHHHHHHH-HHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceEeeecC
Q psy10474 1 MFRLFGSALDNESEKLV-QAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN 59 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~-~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~ 59 (79)
+|||||+|+|+.....+ ..+++.+. .++++|++||+.+....++++..+.+|++...+.
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~ 807 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEec
Confidence 58999999999977666 66666553 3899999999987776689888888888765443
No 81
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.76 E-value=1.8e-09 Score=60.63 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=38.0
Q ss_pred CCcccccCCC-----HHHHHHHHHHHHHhcC-CCEEEEEccCcccc---------cc-C-CEEEEEe
Q psy10474 1 MFRLFGSALD-----NESEKLVQAALESACK-GRTVLMIAHRLSTV---------QN-A-DLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD-----~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~---------~~-~-d~v~~l~ 50 (79)
+|||||+++| +..+..+..++..+.+ ++|+|+++|++... .. | |++++|+
T Consensus 140 ilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 140 VIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp EEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred EEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 5899999997 5566667777776643 99999999999876 34 7 9999995
No 82
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.57 E-value=8.7e-10 Score=61.01 Aligned_cols=51 Identities=10% Similarity=-0.014 Sum_probs=40.4
Q ss_pred CCcccccCC----CHHHHHHHHHHHHHhc--CCCEEEEEccCcccccc-CCEEEEEeC
Q psy10474 1 MFRLFGSAL----DNESEKLVQAALESAC--KGRTVLMIAHRLSTVQN-ADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~l----D~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~~-~d~v~~l~~ 51 (79)
+||||++++ |+..+..+...+.+.. .+.|+|+++|+++.+.. ||++++|..
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 479999998 6778888888877664 38899999999999966 999988843
No 83
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.55 E-value=3.3e-08 Score=54.84 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=38.5
Q ss_pred CCcccccCC--CHHHHHHHHHHHHHhc--CCCEEEEEccCc--------ccccc-CCEEEEEeCc
Q psy10474 1 MFRLFGSAL--DNESEKLVQAALESAC--KGRTVLMIAHRL--------STVQN-ADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~l--D~~~~~~~~~~~~~~~--~~~tvi~vtH~~--------~~~~~-~d~v~~l~~G 52 (79)
|+||||+.+ |+.....+...+.... .+.++|+++|+. ..+.. ||++++++..
T Consensus 128 ilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 128 VIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp EEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred EEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 589999888 9877666666666553 488999999998 44655 9999999764
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.54 E-value=5.1e-08 Score=60.50 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=43.2
Q ss_pred CCcccccC-----CCHHHHHHHHHHHHHhcC-CCEEEEEccCcccc---------cc-CCEEEEEeCc
Q psy10474 1 MFRLFGSA-----LDNESEKLVQAALESACK-GRTVLMIAHRLSTV---------QN-ADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~-----lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~---------~~-~d~v~~l~~G 52 (79)
+|||||+. +|+..+..+..++..+.. +.|+|+++|+++.+ .. ||++++|++|
T Consensus 143 ilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 143 SIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp EEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred EECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 58999984 588888888888877654 89999999999874 34 9999999883
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.52 E-value=2.7e-08 Score=61.73 Aligned_cols=52 Identities=23% Similarity=0.119 Sum_probs=44.0
Q ss_pred CCcccccCCCHH-----HHHHHHHHHHHhc-CCCEEEEEccCc----------ccccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNE-----SEKLVQAALESAC-KGRTVLMIAHRL----------STVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~-----~~~~~~~~~~~~~-~~~tvi~vtH~~----------~~~~~-~d~v~~l~~G~ 53 (79)
|+| ||++||.. .+..+..++..+. .+.|+|+++|+. ..+.. +|++++|+.|+
T Consensus 376 ilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 376 AID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 589 99999998 7888888877664 489999999998 66655 99999998876
No 86
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.45 E-value=6.5e-08 Score=53.90 Aligned_cols=46 Identities=9% Similarity=0.059 Sum_probs=27.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i 54 (79)
+|||||++ .+..+.+.+.....+.|+| +||+++.+.. .....+|..
T Consensus 127 lLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~~ 172 (208)
T 3b85_A 127 ILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGLR 172 (208)
T ss_dssp EECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred EEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcHH
Confidence 58999999 7777777777664488999 9999987754 223455543
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.38 E-value=2.5e-07 Score=53.48 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=34.9
Q ss_pred CCcccccCC------CH-HHHHHHHHHHHHhc-C-CCEEEEEccCc--c--------------------cccc-CCEEEE
Q psy10474 1 MFRLFGSAL------DN-ESEKLVQAALESAC-K-GRTVLMIAHRL--S--------------------TVQN-ADLIVV 48 (79)
Q Consensus 1 ~~de~~s~l------D~-~~~~~~~~~~~~~~-~-~~tvi~vtH~~--~--------------------~~~~-~d~v~~ 48 (79)
|+||||+.+ |. .....+...+..++ + +.++|+++|+. . .+.. ||+|++
T Consensus 152 ilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~ 231 (296)
T 1cr0_A 152 ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIA 231 (296)
T ss_dssp EEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEE
T ss_pred EEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEE
Confidence 589999943 44 34455666665553 3 89999999996 4 4555 999999
Q ss_pred EeCceE
Q psy10474 49 LQAGQI 54 (79)
Q Consensus 49 l~~G~i 54 (79)
|.+|+.
T Consensus 232 L~~~~~ 237 (296)
T 1cr0_A 232 LERNQQ 237 (296)
T ss_dssp EEEC--
T ss_pred EecCcc
Confidence 988764
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.35 E-value=1.7e-07 Score=62.14 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=42.7
Q ss_pred CCcccccCCCHHHH-HHHHHHHHHhc-C-CCEEEEEccCcccccc-CCEEEEEeCceEe
Q psy10474 1 MFRLFGSALDNESE-KLVQAALESAC-K-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 55 (79)
Q Consensus 1 ~~de~~s~lD~~~~-~~~~~~~~~~~-~-~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~ 55 (79)
+||||++++|+... ..+..+++.+. . ++++|++||+++.+.. ++++.++ +|++.
T Consensus 873 LLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 873 LVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred EEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 58999999999864 55677777664 4 8899999999998865 7877776 47765
No 89
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.30 E-value=2.6e-07 Score=51.25 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=33.6
Q ss_pred CCcccccCCCHH-------HH-----HHHHHHHHHh-cC-CCEEEEEccCcc----cccc-CCEEEEEeCce
Q psy10474 1 MFRLFGSALDNE-------SE-----KLVQAALESA-CK-GRTVLMIAHRLS----TVQN-ADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~-------~~-----~~~~~~~~~~-~~-~~tvi~vtH~~~----~~~~-~d~v~~l~~G~ 53 (79)
+||||++.+|+. .+ ..+...+... .+ +.|+|+++|... .+.. +|+++.+++|+
T Consensus 130 ilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 130 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred EECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 489999999983 11 1333333333 23 899999999554 4765 99999998753
No 90
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.28 E-value=3.7e-07 Score=60.05 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCcccccCCCHHHHHHHH-HHHHHhc--CCCEEEEEccCccccc
Q psy10474 1 MFRLFGSALDNESEKLVQ-AALESAC--KGRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~-~~~~~~~--~~~tvi~vtH~~~~~~ 41 (79)
+||||++|+|+.....+. .+++.+. .++++|++||+++...
T Consensus 757 LLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 757 ILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 589999999999777665 6666552 4899999999987664
No 91
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.26 E-value=4e-07 Score=49.54 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=36.3
Q ss_pred CCcc--cccCCCHHHHHHHHHHHHHhcCCCEEEEEcc---Ccccccc-CCEEEEEeCceEee
Q psy10474 1 MFRL--FGSALDNESEKLVQAALESACKGRTVLMIAH---RLSTVQN-ADLIVVLQAGQIVE 56 (79)
Q Consensus 1 ~~de--~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH---~~~~~~~-~d~v~~l~~G~i~~ 56 (79)
+||| ||+++|+.....+.+.+.. .+.++|+++| +...+.. +++ .+|++..
T Consensus 104 ilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 104 IIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp EECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred EEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 5899 9999999998888887765 4667888885 6566644 554 3355544
No 92
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.21 E-value=1.4e-07 Score=61.26 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=37.8
Q ss_pred CCcccccCCCHHHHHHH-HHHHHHhc--CCCEEEEEccCccccccCCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLV-QAALESAC--KGRTVLMIAHRLSTVQNADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~-~~~~~~~~--~~~tvi~vtH~~~~~~~~d~v~~l~~G~i 54 (79)
+||||++|+|+.....+ ..++..+. .+.++|++||+.+....++++..+.+|++
T Consensus 691 LLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL 747 (800)
T ss_dssp EEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEE
T ss_pred EEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEE
Confidence 58999999998755443 55666553 38899999999976654665544444544
No 93
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.98 E-value=2.4e-07 Score=56.60 Aligned_cols=57 Identities=21% Similarity=0.098 Sum_probs=47.8
Q ss_pred ccCCCHHHHHHHHHHHHHhcC-----CC-----EEEEEccCccccccCCEEEEEeCceEeeecChhHH
Q psy10474 6 GSALDNESEKLVQAALESACK-----GR-----TVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 6 ~s~lD~~~~~~~~~~~~~~~~-----~~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 63 (79)
|+++|+.....+.+++++... |. |+++++|+++ ...+|+++.+.+|+++..+++.+.
T Consensus 276 t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 276 TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHc
Confidence 899999999999999987754 43 8999999998 444899999999999887766554
No 94
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.85 E-value=1.3e-05 Score=44.13 Aligned_cols=52 Identities=13% Similarity=0.018 Sum_probs=35.0
Q ss_pred CCcccccCCCHHHH-----HH---HHHHHHHhc-C-CCEEEEEccCccc-------------ccc-CCEEEEEeCc
Q psy10474 1 MFRLFGSALDNESE-----KL---VQAALESAC-K-GRTVLMIAHRLST-------------VQN-ADLIVVLQAG 52 (79)
Q Consensus 1 ~~de~~s~lD~~~~-----~~---~~~~~~~~~-~-~~tvi~vtH~~~~-------------~~~-~d~v~~l~~G 52 (79)
|+|||++.+|+... .. +...+.... + +.++|+++|.... +.. +|.++.+++.
T Consensus 110 iiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 110 VVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp EEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred EEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 58999999987421 22 333344332 2 8899999998762 334 8999999754
No 95
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.83 E-value=6.5e-07 Score=53.28 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=47.1
Q ss_pred ccCCCHHHHHHHHHHHHHhc--C-CC-----EEEEEccCccccccCCEEEEEeCceEeeecChhH
Q psy10474 6 GSALDNESEKLVQAALESAC--K-GR-----TVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKS 62 (79)
Q Consensus 6 ~s~lD~~~~~~~~~~~~~~~--~-~~-----tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~ 62 (79)
|+++|+.....+..++++.. + |. |+++++|+++ ...||++..+.+|+++..++..+
T Consensus 189 t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 189 RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 79999999999999998875 3 66 8899999998 33489999999999988776554
No 96
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.72 E-value=6.5e-06 Score=53.42 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=30.2
Q ss_pred CCccc---ccCCCHHHH-HHHHHHHHHhcCCCEEEEEccCccccc
Q psy10474 1 MFRLF---GSALDNESE-KLVQAALESACKGRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~---~s~lD~~~~-~~~~~~~~~~~~~~tvi~vtH~~~~~~ 41 (79)
+|||| |+++|+... ..+.+.+.. .++++|++||+.+...
T Consensus 660 LLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 660 LLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTA 702 (765)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHT
T ss_pred EEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHH
Confidence 58999 999998864 456665554 4889999999987653
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.60 E-value=9.3e-05 Score=39.74 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=32.3
Q ss_pred CCccccc-CCCHHHHHHHHHHHHHhc-CCCEEEEEccCccc
Q psy10474 1 MFRLFGS-ALDNESEKLVQAALESAC-KGRTVLMIAHRLST 39 (79)
Q Consensus 1 ~~de~~s-~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~~~~ 39 (79)
+||||++ ++|+.....+..++.... .++++|++||....
T Consensus 105 ilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 105 VLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp EEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred EEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 5899996 899999888888887664 68899999998753
No 98
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.51 E-value=9.8e-05 Score=41.11 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=29.2
Q ss_pred CCcccccCCCHH-------H-----HHHHHHHHHHh-cC-CCEEEEEccCccc-------------------cc-cCCEE
Q psy10474 1 MFRLFGSALDNE-------S-----EKLVQAALESA-CK-GRTVLMIAHRLST-------------------VQ-NADLI 46 (79)
Q Consensus 1 ~~de~~s~lD~~-------~-----~~~~~~~~~~~-~~-~~tvi~vtH~~~~-------------------~~-~~d~v 46 (79)
|+||+++.+|+. . ...+...+... .+ +.|+|+++|.... +. .+|.+
T Consensus 124 iiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~v 203 (243)
T 1n0w_A 124 IVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR 203 (243)
T ss_dssp EEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEE
T ss_pred EEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEE
Confidence 589999999875 2 11222223222 23 8999999996543 22 38999
Q ss_pred EEEeCc
Q psy10474 47 VVLQAG 52 (79)
Q Consensus 47 ~~l~~G 52 (79)
+.++.|
T Consensus 204 i~l~~~ 209 (243)
T 1n0w_A 204 LYLRKG 209 (243)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999865
No 99
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=0.00013 Score=42.86 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=34.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
+||||++ ||+.....+...++....+.++|+++|++..+
T Consensus 139 ilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 139 IINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 177 (354)
T ss_dssp EEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred EEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence 5899999 99999999999998876788999999998654
No 100
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.42 E-value=2.4e-05 Score=47.69 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=33.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc------C----CCEEEEEccCccc--ccc-CCEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC------K----GRTVLMIAHRLST--VQN-ADLIV 47 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~------~----~~tvi~vtH~~~~--~~~-~d~v~ 47 (79)
+|||||++||+..+..+.+.+.... . ..++++.+|.+.. +.. ++++.
T Consensus 189 lLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 189 ITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 4899999999998887777766542 1 3567778888876 544 66653
No 101
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.40 E-value=5.3e-05 Score=43.47 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCccccc--CCCHHHH---HHHHHHHHHhc--CCCEEEEEccCcccc
Q psy10474 1 MFRLFGS--ALDNESE---KLVQAALESAC--KGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s--~lD~~~~---~~~~~~~~~~~--~~~tvi~vtH~~~~~ 40 (79)
|||||++ ++|.... ..+...+.... .++|+|+++|.....
T Consensus 138 vlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 138 VLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp EEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred EECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 6899999 8887433 45555555543 389999999998654
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.35 E-value=6.8e-05 Score=44.61 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=24.9
Q ss_pred CCcccccCCCHHH------------HHHHHHHHHHhc--CCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNES------------EKLVQAALESAC--KGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~------------~~~~~~~~~~~~--~~~tvi~vtH~~~~~ 40 (79)
|+||||+++|+.. ...+...+.... .+.|+|+++|.....
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 5899999999852 122333333332 388999999987644
No 103
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.31 E-value=5.9e-06 Score=48.84 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=33.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCC-CEEEEEccCccccccCCEEEEEeCce
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKG-RTVLMIAHRLSTVQNADLIVVLQAGQ 53 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~-~tvi~vtH~~~~~~~~d~v~~l~~G~ 53 (79)
+||||++. .+.+.+..+..+ .|+++++|+.+....+|+++.+..|.
T Consensus 245 ildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 245 ILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp EECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 58999982 234455555454 57999999999555599999998875
No 104
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.24 E-value=9.3e-06 Score=47.68 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=34.3
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeCceEeeecChhHH
Q psy10474 6 GSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 6 ~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 63 (79)
||+||+.++..+.. ++|++..+..+|++ +|++|+++..|++.++
T Consensus 221 Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 89999987776641 28998888779999 9999999999998887
No 105
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.97 E-value=6.6e-05 Score=43.06 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=28.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 49 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l 49 (79)
+||||+ |+.....+ +.....+.++++++|+.+....+++++.|
T Consensus 103 llDEp~---D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l 145 (261)
T 2eyu_A 103 FVGEMR---DLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDI 145 (261)
T ss_dssp EESCCC---SHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHT
T ss_pred EeCCCC---CHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhh
Confidence 589999 88765433 33334588999999998744335655433
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.97 E-value=0.00056 Score=43.47 Aligned_cols=58 Identities=9% Similarity=0.169 Sum_probs=39.9
Q ss_pred CCccc------ccCCCHHHHHHHHHHHHHhc-C--CCEEEEEccCccccc-------------cCCEEEEEeCceEeeec
Q psy10474 1 MFRLF------GSALDNESEKLVQAALESAC-K--GRTVLMIAHRLSTVQ-------------NADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de~------~s~lD~~~~~~~~~~~~~~~-~--~~tvi~vtH~~~~~~-------------~~d~v~~l~~G~i~~~~ 58 (79)
++||| |+++|+.....+..++..+. . +.++++++|+.+... ....+.++..+-++..|
T Consensus 151 LlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g 230 (608)
T 3szr_A 151 LIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKG 230 (608)
T ss_dssp EEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSS
T ss_pred EeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcc
Confidence 47999 99999999999999888753 2 567778999876431 13456666665544433
No 107
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.75 E-value=0.00082 Score=35.36 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=25.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCE-EEEEccCc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRT-VLMIAHRL 37 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~t-vi~vtH~~ 37 (79)
+||||++ ++...+..+..++..... +++ +|+++|..
T Consensus 88 ilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 88 AVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp EEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred EEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 5899998 555447777777776543 677 77777753
No 108
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.74 E-value=0.00061 Score=39.86 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=32.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCc---------ccccc-CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRL---------STVQN-ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~---------~~~~~-~d~v~~l~~G~i 54 (79)
||| ||+++|+.... ..+.. ..+.|+|++||.- +.+.. ..++.++..|+.
T Consensus 226 vLD-ptsglD~~~~~--~~~~~--~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 226 VLD-GNTGLNMLPQA--REFNE--VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EEE-GGGGGGGHHHH--HHHHH--HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEe-CCCCcCHHHHH--HHHHH--hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 589 99999988543 11111 2378999999932 23333 567888888864
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.61 E-value=0.00024 Score=38.95 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=34.1
Q ss_pred CCcc--cccCCCHHHHHHHHHHHHHhcCCCEEEE----EccCccccccCCEEEEEeCceEeeec
Q psy10474 1 MFRL--FGSALDNESEKLVQAALESACKGRTVLM----IAHRLSTVQNADLIVVLQAGQIVEMG 58 (79)
Q Consensus 1 ~~de--~~s~lD~~~~~~~~~~~~~~~~~~tvi~----vtH~~~~~~~~d~v~~l~~G~i~~~~ 58 (79)
|||| |+..+|......+.+++.. ..++|+ ++|+.+ ....+++..+.+|++....
T Consensus 110 ilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 110 VIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp EECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred EEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 5899 7877888766666666653 334443 338764 2235666667778877644
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.57 E-value=0.00018 Score=42.98 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=31.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
++|||+ |......+... ...|.++++++|..+.+..++|++.|..
T Consensus 201 llDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 201 LVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp EESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred ecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 589999 65553333322 3458899999999988755888876643
No 111
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.56 E-value=0.0017 Score=39.43 Aligned_cols=53 Identities=9% Similarity=0.131 Sum_probs=32.7
Q ss_pred CCcccccCCCHHHH------------HHHHHHHHHhc-C-CCEEEEEccCcc-------------------cccc-CCEE
Q psy10474 1 MFRLFGSALDNESE------------KLVQAALESAC-K-GRTVLMIAHRLS-------------------TVQN-ADLI 46 (79)
Q Consensus 1 ~~de~~s~lD~~~~------------~~~~~~~~~~~-~-~~tvi~vtH~~~-------------------~~~~-~d~v 46 (79)
|+|++++.+++... ..+...+..+. + +.|+|+++|... .+.. +|.+
T Consensus 278 VIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~v 357 (400)
T 3lda_A 278 VVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTR 357 (400)
T ss_dssp EEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEE
T ss_pred EecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceE
Confidence 57999999986432 33344444443 2 899999999821 1234 7888
Q ss_pred EEEeCce
Q psy10474 47 VVLQAGQ 53 (79)
Q Consensus 47 ~~l~~G~ 53 (79)
+.+++++
T Consensus 358 l~L~~~~ 364 (400)
T 3lda_A 358 LGFKKGK 364 (400)
T ss_dssp EEEEECS
T ss_pred EEEEecC
Confidence 8887653
No 112
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.24 E-value=0.0019 Score=38.75 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=32.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccC---------cccccc-CCEEEEEeCceE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHR---------LSTVQN-ADLIVVLQAGQI 54 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~---------~~~~~~-~d~v~~l~~G~i 54 (79)
||| ||+++|+..... .+.. ..+.|+|++||. ++.... ...+.++..|+.
T Consensus 283 vLD-pttglD~~~~~~--~~~~--~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 283 VLD-GNTGLNMLPQAR--EFNE--VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EEE-GGGGGGGHHHHH--HHHH--HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEc-CCCCCCHHHHHH--HHHH--hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 589 999999885531 1111 237899999993 223333 677888888764
No 113
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.95 E-value=0.00035 Score=37.69 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=34.4
Q ss_pred cCCCHHHHHHHHHHHHHhc-CCCEEEEEccC-cccccc-CCEEEEEeCceEeeecChhHH
Q psy10474 7 SALDNESEKLVQAALESAC-KGRTVLMIAHR-LSTVQN-ADLIVVLQAGQIVEMGNHKSL 63 (79)
Q Consensus 7 s~lD~~~~~~~~~~~~~~~-~~~tvi~vtH~-~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 63 (79)
.++|+..... .+.+.... .+.++|.++|. ++.+.. |++++ ++|+++..|++..+
T Consensus 126 ~~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 126 EQMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp ---CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred ccCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 3678765555 55555553 36788999998 888866 89988 89999988877654
No 114
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.70 E-value=0.0098 Score=32.97 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=32.3
Q ss_pred CCcccccCC--CHHH-HHHHHHHHHHhc-CCCEEEEEccCccc--------ccc-CCEEEEEeC
Q psy10474 1 MFRLFGSAL--DNES-EKLVQAALESAC-KGRTVLMIAHRLST--------VQN-ADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~l--D~~~-~~~~~~~~~~~~-~~~tvi~vtH~~~~--------~~~-~d~v~~l~~ 51 (79)
++|+++..+ |+.. ...+..+..... .+.++|+++|.... +.. +|.++.++.
T Consensus 133 viD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 133 VVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp EEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred EECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 478998877 4432 334444444332 48899999998765 234 899998864
No 115
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.26 E-value=0.00049 Score=38.25 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=27.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
+||||++++|..+...+.+.+.....+.+ ++| +..+|.+++.+
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~ 192 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIIND 192 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECC
Confidence 47999999999877777776655433333 344 23356665554
No 116
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.20 E-value=0.061 Score=30.93 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=24.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
+||||++++|+.....+..+ ....++|++.|..+.+
T Consensus 118 lldep~~gL~~lD~~~l~~L----~~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 118 FISPTGHSLRPLDLEFMKHL----SKVVNIIPVIAKADTM 153 (270)
T ss_dssp EECCCSSSCCHHHHHHHHHH----HTTSEEEEEETTGGGS
T ss_pred EEecCCCcCCHHHHHHHHHH----HhcCcEEEEEeccccC
Confidence 48999999998874433332 2237888888776655
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.06 E-value=0.08 Score=31.59 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=20.1
Q ss_pred CCEEEEEccCccc----------------ccc-CCEEEEEeCceEe
Q psy10474 27 GRTVLMIAHRLST----------------VQN-ADLIVVLQAGQIV 55 (79)
Q Consensus 27 ~~tvi~vtH~~~~----------------~~~-~d~v~~l~~G~i~ 55 (79)
+.++|+++|.... +.. ++.++.+++++..
T Consensus 188 ~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 188 GTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp TCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred CCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 8899999996541 334 7888888776544
No 118
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.81 E-value=0.17 Score=31.66 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=36.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEe
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~ 50 (79)
||||+ +-+|......+.+++..+ |..+|+++-. ...+..+.++.+-
T Consensus 419 vlDEA-~kmD~~~~~~~~~l~~~l--glQliiatP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 419 FLDQA-ARLDAMSINTLFELCERL--DMQLLIAAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESSG-GGSCHHHHHHHHHHHHHT--TCEEEEEESS-SCCCSSSEEEECC
T ss_pred EEecc-ccCCHHHHHHHHHHHHHc--CCEEEEECcc-hhhhccCceEEEE
Confidence 58999 999999999998888865 7788888866 3334478877664
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.66 E-value=0.023 Score=31.70 Aligned_cols=31 Identities=6% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccCcccccc
Q psy10474 9 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQN 42 (79)
Q Consensus 9 lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~ 42 (79)
||+.....+.+.+. .+.++++++|+++.+..
T Consensus 115 LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 115 IDWQGAQQIRQKMP---HARSIFILPPSKIELDR 145 (219)
T ss_dssp CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH
T ss_pred ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH
Confidence 89998888887664 57899999999988744
No 120
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.40 E-value=0.1 Score=31.29 Aligned_cols=41 Identities=7% Similarity=0.099 Sum_probs=33.4
Q ss_pred CCcccccCCC---HHHHHHHHHHHHHhcC-CCEEEEEccCccccc
Q psy10474 1 MFRLFGSALD---NESEKLVQAALESACK-GRTVLMIAHRLSTVQ 41 (79)
Q Consensus 1 ~~de~~s~lD---~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~~ 41 (79)
++||++.-++ +.....+...+++.++ +..++++||.+..+.
T Consensus 267 ~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 267 VVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp EETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred EEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 5899999995 5566778888887776 899999999997663
No 121
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.18 E-value=0.0023 Score=35.00 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=28.5
Q ss_pred CCcccccC-------CCHHHHHHHHHHHHHh--cCCCEEEEEccCc
Q psy10474 1 MFRLFGSA-------LDNESEKLVQAALESA--CKGRTVLMIAHRL 37 (79)
Q Consensus 1 ~~de~~s~-------lD~~~~~~~~~~~~~~--~~~~tvi~vtH~~ 37 (79)
++|||+++ ||+.....+...+.+. ..+.|++.++|+.
T Consensus 116 ~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 116 LYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp TSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 46999999 8998887777776653 2478888888874
No 122
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.42 E-value=0.097 Score=30.48 Aligned_cols=34 Identities=9% Similarity=-0.085 Sum_probs=22.9
Q ss_pred CCcccccC-CCHHHHHHHHHHHHHhcC--CCEEEEEccCcc
Q psy10474 1 MFRLFGSA-LDNESEKLVQAALESACK--GRTVLMIAHRLS 38 (79)
Q Consensus 1 ~~de~~s~-lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~ 38 (79)
+|||||++ ||+... +.+..... +.++|+..||+.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 37999985 999864 33333332 667788889874
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.39 E-value=0.065 Score=29.99 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=19.5
Q ss_pred CCc----ccccCCCHHHHHHHHHHHHHh
Q psy10474 1 MFR----LFGSALDNESEKLVQAALESA 24 (79)
Q Consensus 1 ~~d----e~~s~lD~~~~~~~~~~~~~~ 24 (79)
+|| |||+++|+.....+.+.+...
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHH
Confidence 479 999999998887777776654
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.84 E-value=0.014 Score=35.01 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=20.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLS 38 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~ 38 (79)
++|||+ |+... ...+.....|.+++.++|..+
T Consensus 214 lldE~~---d~e~~---~~~l~~~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 214 FVGEMR---DLETV---ETALRAAETGHLVFGTLHTNT 245 (372)
T ss_dssp EESCCC---SHHHH---HHHHHHHTTTCEEEECCCCCS
T ss_pred EECCCC---CHHHH---HHHHHHHhcCCEEEEEECcch
Confidence 479999 65543 233343445788888889765
No 125
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.35 E-value=0.044 Score=29.59 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=19.3
Q ss_pred CcccccCCCHHHHHHHHHHHHHhc
Q psy10474 2 FRLFGSALDNESEKLVQAALESAC 25 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~~~~~~~ 25 (79)
+|||+|++|+.....+.+.+....
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCHHHHHHHHHHHH
Confidence 689999999998887777776553
No 126
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=91.17 E-value=0.00038 Score=42.21 Aligned_cols=58 Identities=14% Similarity=0.025 Sum_probs=42.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh-cC-CCEEEEEccCcccccc-CCEEE-EEeCc-eEeeecCh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA-CK-GRTVLMIAHRLSTVQN-ADLIV-VLQAG-QIVEMGNH 60 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~-~~-~~tvi~vtH~~~~~~~-~d~v~-~l~~G-~i~~~~~~ 60 (79)
++||++..+|+.........+... .. +.|+ ++|.+..... |+++. .|.+| +++..+..
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 368888888888777777777665 44 5554 3898887755 89988 88899 77655543
No 127
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.86 E-value=0.27 Score=30.20 Aligned_cols=53 Identities=9% Similarity=0.219 Sum_probs=31.9
Q ss_pred CCcccccCCCH--------HHHHHHHHHHHHhc-C-CCEEEEEcc---------C--cc--------cccc-CCEEEEEe
Q psy10474 1 MFRLFGSALDN--------ESEKLVQAALESAC-K-GRTVLMIAH---------R--LS--------TVQN-ADLIVVLQ 50 (79)
Q Consensus 1 ~~de~~s~lD~--------~~~~~~~~~~~~~~-~-~~tvi~vtH---------~--~~--------~~~~-~d~v~~l~ 50 (79)
|+|+++....+ .....+...+..++ + +.++|+++| + +. .+.. +|.|+++.
T Consensus 318 vID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~ 397 (454)
T 2r6a_A 318 VIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLY 397 (454)
T ss_dssp EEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEE
T ss_pred EEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEe
Confidence 46887776632 11233334444443 2 889999999 2 22 3445 89999997
Q ss_pred Cce
Q psy10474 51 AGQ 53 (79)
Q Consensus 51 ~G~ 53 (79)
++.
T Consensus 398 r~~ 400 (454)
T 2r6a_A 398 RDD 400 (454)
T ss_dssp ETT
T ss_pred ccc
Confidence 654
No 128
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.72 E-value=0.0047 Score=33.74 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=29.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccccccCCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~ 51 (79)
+|||+++++|..+...+...+.....+ +.+.| .. ..+|.+++.++
T Consensus 129 ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 129 VLEQRLRLRNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 479999999988877777766554332 13345 11 45888877753
No 129
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.50 E-value=0.36 Score=29.60 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=23.7
Q ss_pred CCcccc-cCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFG-SALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~-s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
+||||| +++|+.....+ ..+..+.++|+|.|..+.+
T Consensus 144 ~ldePt~~~L~~~d~~~l----k~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 144 YFIAPSGHGLKPLDIEFM----KRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp EECCC-CCSCCHHHHHHH----HHHTTTSEEEEEEESTTSS
T ss_pred EEecCcccCCCHHHHHHH----HHHhccCcEEEEEEcccCc
Confidence 479999 69998764333 3333577888888877654
No 130
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.24 E-value=0.056 Score=32.15 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=24.9
Q ss_pred ccCCCHHHHHHHHHHHHHhcC--CCEEEEEccCcccccc-CCEEEEE
Q psy10474 6 GSALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVL 49 (79)
Q Consensus 6 ~s~lD~~~~~~~~~~~~~~~~--~~tvi~vtH~~~~~~~-~d~v~~l 49 (79)
+.++|+.++..+...+.+... +.++++++|. ....+ ++++..+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence 358899988888888765533 7888888864 33333 4444444
No 131
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.75 E-value=0.31 Score=30.76 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=24.8
Q ss_pred CCcccccCCCHHH---HHHHHHHHHHhcC-CCEEEEEccCcc
Q psy10474 1 MFRLFGSALDNES---EKLVQAALESACK-GRTVLMIAHRLS 38 (79)
Q Consensus 1 ~~de~~s~lD~~~---~~~~~~~~~~~~~-~~tvi~vtH~~~ 38 (79)
|+||++..++... ...+..+.+..+. |.++|++||++.
T Consensus 302 vIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 5799998887432 2223333333333 889999999987
No 132
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.03 E-value=1.7 Score=25.22 Aligned_cols=31 Identities=10% Similarity=-0.015 Sum_probs=20.8
Q ss_pred CCccc-ccCCCHHHHHHHHHHHHHhcCCCEEE
Q psy10474 1 MFRLF-GSALDNESEKLVQAALESACKGRTVL 31 (79)
Q Consensus 1 ~~de~-~s~lD~~~~~~~~~~~~~~~~~~tvi 31 (79)
|+|+| ++++|......+...........+++
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~l 216 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLGPDEVLL 216 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcCCCEEEE
Confidence 57988 99999876666666665554444443
No 133
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=82.26 E-value=1.5 Score=26.92 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=35.3
Q ss_pred CCcccccCCCH-HHHHHHHHHHHHhc-CCCEEEEEccCcc-cccc-CCEEEE-EeCceEeeecCh
Q psy10474 1 MFRLFGSALDN-ESEKLVQAALESAC-KGRTVLMIAHRLS-TVQN-ADLIVV-LQAGQIVEMGNH 60 (79)
Q Consensus 1 ~~de~~s~lD~-~~~~~~~~~~~~~~-~~~tvi~vtH~~~-~~~~-~d~v~~-l~~G~i~~~~~~ 60 (79)
++||+....+. ..+..+...+.... .++.+|+++|... .+.. .+++.. +..|.++...++
T Consensus 199 ~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp EEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred EEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 57999888764 45566666666544 4788888888753 3222 233322 445655544443
No 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.13 E-value=1.9 Score=23.17 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=25.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
++||+.. +++.....+...+.....+..+|++++....+
T Consensus 131 viDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 131 LIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp EEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred EEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4788776 67666666666665544466777788766543
No 135
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=80.59 E-value=2.6 Score=24.65 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCCEEEEEccCccc
Q psy10474 15 KLVQAALESACKGRTVLMIAHRLST 39 (79)
Q Consensus 15 ~~~~~~~~~~~~~~tvi~vtH~~~~ 39 (79)
..+.+.+.....+.++++++|+.-.
T Consensus 167 ~~l~~~l~~l~~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 167 EKLHERLARINARAPVYTVTHGDID 191 (318)
T ss_dssp HHHHHHHHHHCSSSCEEECCSSCCC
T ss_pred HHHHHHHHHhCCCCeEEEecccCCC
Confidence 5566666666668899999997543
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=79.35 E-value=0.76 Score=26.99 Aligned_cols=37 Identities=5% Similarity=-0.112 Sum_probs=25.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc----CCCEEEEEccCcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC----KGRTVLMIAHRLS 38 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~----~~~tvi~vtH~~~ 38 (79)
+|||+... |......+...+.... .+..+|+++|++.
T Consensus 130 ilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 130 VLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp EEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred EEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 58999877 7766666665554332 3668888898874
No 137
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=77.10 E-value=0.6 Score=25.81 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=34.7
Q ss_pred CCcccccCCCH--HHHHHHHHHHHHhcCCCEEEEEccCccc-c-ccCCEEEEEeC
Q psy10474 1 MFRLFGSALDN--ESEKLVQAALESACKGRTVLMIAHRLST-V-QNADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~--~~~~~~~~~~~~~~~~~tvi~vtH~~~~-~-~~~d~v~~l~~ 51 (79)
||||...+++. .....+.+++...-....+|+..+.... + ..+|-|.-|..
T Consensus 125 ILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 125 VLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp EEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred EEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 58888775322 2344566677655567888888888753 3 44999988865
No 138
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=75.73 E-value=0.45 Score=27.71 Aligned_cols=54 Identities=6% Similarity=0.114 Sum_probs=30.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhc---CCCEEEEE--ccCcccccc-CCEEEEEeCceEee
Q psy10474 1 MFRLFGSALDNESEKLVQAALESAC---KGRTVLMI--AHRLSTVQN-ADLIVVLQAGQIVE 56 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~---~~~tvi~v--tH~~~~~~~-~d~v~~l~~G~i~~ 56 (79)
|+| |+++|+.....+.++..... ...+++++ +|....+.. ++++..+..+.++.
T Consensus 187 IiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 187 FVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp EEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred EEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 467 88888876666655554332 22334444 787665544 55544455555544
No 139
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=73.10 E-value=3.1 Score=27.53 Aligned_cols=40 Identities=5% Similarity=-0.032 Sum_probs=25.4
Q ss_pred CCccccc-CCCHHHHHHHHHHHHHhcC-CCEEEE-EccCcccc
Q psy10474 1 MFRLFGS-ALDNESEKLVQAALESACK-GRTVLM-IAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s-~lD~~~~~~~~~~~~~~~~-~~tvi~-vtH~~~~~ 40 (79)
|||||+. ++|......+...+..... .+++++ +||+.+.+
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l 255 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKF 255 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHH
T ss_pred EecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHH
Confidence 6899997 8887755444444444443 456666 58876655
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=72.99 E-value=6.3 Score=23.32 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=25.7
Q ss_pred CCc-ccccCCCHHHHHHHHHHHHHhcCCCEEEEEc--cCcc
Q psy10474 1 MFR-LFGSALDNESEKLVQAALESACKGRTVLMIA--HRLS 38 (79)
Q Consensus 1 ~~d-e~~s~lD~~~~~~~~~~~~~~~~~~tvi~vt--H~~~ 38 (79)
|+| ++.+++|......+...+.....+..+|++. ||+.
T Consensus 253 V~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 253 IFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp EECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred EEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 468 7788888887665555555444467787777 7764
No 141
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=70.85 E-value=0.84 Score=27.06 Aligned_cols=54 Identities=9% Similarity=-0.060 Sum_probs=34.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhc--CCCEEEEEccCccccc---------c-CCEEEEEeCceEe
Q psy10474 2 FRLFGSALDNESEKLVQAALESAC--KGRTVLMIAHRLSTVQ---------N-ADLIVVLQAGQIV 55 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~~---------~-~d~v~~l~~G~i~ 55 (79)
.|||+..||+.+...+...+.... .+.+.|++||.-.... . .-.+.++..|..+
T Consensus 242 ~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 242 PNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp CSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred CCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 478888888876655555554443 3789999999543211 1 3567777777643
No 142
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.50 E-value=9.4 Score=22.04 Aligned_cols=39 Identities=5% Similarity=0.226 Sum_probs=26.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
++|| ...+++.....+...++.......+|++++.+..+
T Consensus 138 iiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 138 ILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp EETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred EEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 4788 45677777777777777765555667777766543
No 143
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=58.30 E-value=3.3 Score=24.21 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEEccCcccc
Q psy10474 8 ALDNESEKLVQAALESAC--KGRTVLMIAHRLSTV 40 (79)
Q Consensus 8 ~lD~~~~~~~~~~~~~~~--~~~tvi~vtH~~~~~ 40 (79)
.||+.+...+...+.... .+.|+|++||+....
T Consensus 227 vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 227 VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc
Confidence 455544333434343332 278999999986544
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=57.84 E-value=1.1 Score=26.13 Aligned_cols=39 Identities=5% Similarity=0.057 Sum_probs=20.7
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh---cC-CCEEEEEccCccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA---CK-GRTVLMIAHRLST 39 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~---~~-~~tvi~vtH~~~~ 39 (79)
+|||+....+......+..++... .. +.++|+++|+...
T Consensus 133 ilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 133 VLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp EEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred EEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 478888765332122233333322 22 5677889988754
No 145
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=53.43 E-value=15 Score=20.20 Aligned_cols=14 Identities=0% Similarity=0.041 Sum_probs=9.3
Q ss_pred CCccccc-CCCHHHH
Q psy10474 1 MFRLFGS-ALDNESE 14 (79)
Q Consensus 1 ~~de~~s-~lD~~~~ 14 (79)
|+||+.. ++|....
T Consensus 181 VlDEah~~~~~~~~~ 195 (235)
T 3llm_A 181 IVDEIHERDINTDFL 195 (235)
T ss_dssp EECCTTSCCHHHHHH
T ss_pred EEECCccCCcchHHH
Confidence 5899987 4655544
No 146
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=53.02 E-value=5.4 Score=21.18 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=11.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALES 23 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~ 23 (79)
|+||+...++......+..++..
T Consensus 151 ViDEah~~~~~~~~~~l~~i~~~ 173 (206)
T 1vec_A 151 VLDEADKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHH
T ss_pred EEEChHHhHhhCcHHHHHHHHHh
Confidence 46777766654433444444433
No 147
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=49.72 E-value=27 Score=18.24 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=22.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLS 38 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~ 38 (79)
++||+.. +++.....+...+.....+..+|+++....
T Consensus 107 iiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 107 FLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp EEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred EEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 4677654 455555666666665444556667776654
No 148
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=49.61 E-value=12 Score=23.39 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=20.9
Q ss_pred CCccccc----------CCCHHHHHHHHHHHHHh-----cCCCEEEEEccCcccc
Q psy10474 1 MFRLFGS----------ALDNESEKLVQAALESA-----CKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s----------~lD~~~~~~~~~~~~~~-----~~~~tvi~vtH~~~~~ 40 (79)
+|||+.+ +.+......+..++..+ ..+..+|.+||.++.+
T Consensus 113 fIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 113 FIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp EEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred EEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 3688854 34444444444444333 1356777888887544
No 149
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=48.80 E-value=12 Score=20.62 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=10.3
Q ss_pred cCCCEEEEEccCc
Q psy10474 25 CKGRTVLMIAHRL 37 (79)
Q Consensus 25 ~~~~tvi~vtH~~ 37 (79)
..+.++++|+|..
T Consensus 172 ~~~~~vlvVsHg~ 184 (237)
T 3r7a_A 172 DGGGNVLVVVHGL 184 (237)
T ss_dssp TTCEEEEEEECHH
T ss_pred CCCCeEEEEcCHH
Confidence 3578999999974
No 150
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=48.34 E-value=25 Score=17.39 Aligned_cols=32 Identities=3% Similarity=0.031 Sum_probs=14.0
Q ss_pred ccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCc
Q psy10474 6 GSALDNESEKLVQAALESACK-GRTVLMIAHRL 37 (79)
Q Consensus 6 ~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~ 37 (79)
.+.||..+...+...+..... .+.+|+-....
T Consensus 27 ~G~L~f~~a~~~~~~l~~~~~~~~~vvlDls~v 59 (130)
T 4dgh_A 27 EGPFFFAAAETFERVMGSIQETPQILILRLKWV 59 (130)
T ss_dssp CSSCCHHHHHHHHHHHHHSSSCCSEEEEECTTC
T ss_pred eeeEeehhHHHHHHHHHHhccCCCEEEEECCCC
Confidence 344555555555444443321 33444444333
No 151
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=44.18 E-value=3.5 Score=21.93 Aligned_cols=22 Identities=23% Similarity=0.139 Sum_probs=10.0
Q ss_pred CCcccccCCCHHHHHHHHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALE 22 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~ 22 (79)
|+||+...++......+..++.
T Consensus 149 ViDEah~~~~~~~~~~~~~i~~ 170 (207)
T 2gxq_A 149 VLDEADEMLSMGFEEEVEALLS 170 (207)
T ss_dssp EEESHHHHHHTTCHHHHHHHHH
T ss_pred EEEChhHhhccchHHHHHHHHH
Confidence 4677665444333333333333
No 152
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=43.80 E-value=13 Score=20.50 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=9.7
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 172 ~~~~vlvVsHg~ 183 (240)
T 1qhf_A 172 SGKTVMIAAHGN 183 (240)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCEEEEEeCHH
Confidence 567899999975
No 153
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=43.77 E-value=12 Score=20.14 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=12.6
Q ss_pred CCcccccCCC-HHHHHHHHHHHHH
Q psy10474 1 MFRLFGSALD-NESEKLVQAALES 23 (79)
Q Consensus 1 ~~de~~s~lD-~~~~~~~~~~~~~ 23 (79)
|+||+...++ ......+..++..
T Consensus 163 ViDEah~~~~~~~~~~~~~~i~~~ 186 (220)
T 1t6n_A 163 ILDECDKMLEQLDMRRDVQEIFRM 186 (220)
T ss_dssp EEESHHHHHSSHHHHHHHHHHHHT
T ss_pred EEcCHHHHhcccCcHHHHHHHHHh
Confidence 5788887765 3333444444443
No 154
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=43.58 E-value=5.9 Score=23.99 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=25.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC-CCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK-GRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vtH~~~~~ 40 (79)
++||+.+-+... .+...+...++ |..++++++.+..+
T Consensus 284 ~lDE~~~l~~~~---~l~~~~~~~R~~g~~~~~~~Qs~~ql 321 (437)
T 1e9r_A 284 FIDELASLEKLA---SLADALTKGRKAGLRVVAGLQSTSQL 321 (437)
T ss_dssp EESCGGGSCBCS---SHHHHHHHCTTTTEEEEEEESCHHHH
T ss_pred EEEcccccccch---hHHHHHHHHhccCCEEEEEecCHHHH
Confidence 589999876411 34555666655 88999999988644
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=42.25 E-value=29 Score=20.17 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=23.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLST 39 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~ 39 (79)
++||+.. ++......+...++.......+|++++....
T Consensus 124 iiDe~~~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 124 LIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp EEECGGG-SCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred EEECcch-hcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4677654 5666666666666654445566777776653
No 156
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=41.51 E-value=21 Score=20.05 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=10.0
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 184 ~~~~vlvVsHg~ 195 (264)
T 3mbk_A 184 KGNNILIVAHAS 195 (264)
T ss_dssp SCSEEEEEECTT
T ss_pred CCCeEEEEecHH
Confidence 378999999975
No 157
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=41.13 E-value=26 Score=20.46 Aligned_cols=39 Identities=8% Similarity=0.033 Sum_probs=22.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
|+||+.. |.......+.+.+++...+..+|+++++++.+
T Consensus 113 iIdead~-l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 113 WVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPERL 151 (334)
T ss_dssp EESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred EECchhh-cCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC
Confidence 3566653 44444555555665544455667788877533
No 158
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=39.78 E-value=7.5 Score=20.64 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=15.7
Q ss_pred CCcccccC-CCHH-HHHHHHHHHHHh-cCCCEEEEEccC
Q psy10474 1 MFRLFGSA-LDNE-SEKLVQAALESA-CKGRTVLMIAHR 36 (79)
Q Consensus 1 ~~de~~s~-lD~~-~~~~~~~~~~~~-~~~~tvi~vtH~ 36 (79)
+|||+... ++.. ....+..++... ..+..+|++++.
T Consensus 120 ilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 120 MLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp EEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred EEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 46777432 2222 222333444433 345556665553
No 159
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=39.54 E-value=41 Score=18.74 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=25.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccC---------c-ccc-ccCCEEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHR---------L-STV-QNADLIVVL 49 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~---------~-~~~-~~~d~v~~l 49 (79)
++||+.- ++...-..+..+. . .+.++|++.|+ . ..+ ..+|.|.-|
T Consensus 94 iIDEaQ~-l~~~~ve~l~~L~-~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 94 GIDEVQF-FDDRICEVANILA-E--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp EECSGGG-SCTHHHHHHHHHH-H--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred EEecCcc-CcHHHHHHHHHHH-h--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 4688864 5544333332222 1 38899999982 2 222 347888764
No 160
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=39.29 E-value=5.9 Score=21.50 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=12.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA 24 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~ 24 (79)
|+||+..-++......+..++...
T Consensus 172 ViDEah~~~~~~~~~~~~~i~~~~ 195 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKILLDV 195 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHHHHHS
T ss_pred EEECHHHHhccchHHHHHHHHHhC
Confidence 467776555433334444444443
No 161
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=39.22 E-value=34 Score=19.60 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=25.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
++||+..--.......+...++....+..+|++++....+
T Consensus 110 iiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 110 VIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp EEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred EEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 4677754432555666777777665567788888876543
No 162
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=39.21 E-value=35 Score=17.01 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=15.1
Q ss_pred cccCCCHHHHHHHHHHHHHhcC-CCEEEEEc
Q psy10474 5 FGSALDNESEKLVQAALESACK-GRTVLMIA 34 (79)
Q Consensus 5 ~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vt 34 (79)
..+.+|......+..+.+.... |..++++.
T Consensus 61 ~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 91 (135)
T 4dgf_A 61 RVPVIDATGMHALWEFQESCEKRGTILLLSG 91 (135)
T ss_dssp TCSCBCHHHHHHHHHHHHHHHHHTCEEEEES
T ss_pred CCCccCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 3455566555555555554433 44444443
No 163
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=39.05 E-value=26 Score=16.57 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=18.2
Q ss_pred ccccCCCHHHHHHHHHHHHHhcC-CCEEEEEc
Q psy10474 4 LFGSALDNESEKLVQAALESACK-GRTVLMIA 34 (79)
Q Consensus 4 e~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vt 34 (79)
.....+|...-..+..+.+.... |..+.++.
T Consensus 52 s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 83 (99)
T 3oiz_A 52 SRAHIWDISSVQALDMAVLKFRREGAEVRIVG 83 (99)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 33456677766666666665543 55555543
No 164
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=38.79 E-value=5.6 Score=21.87 Aligned_cols=23 Identities=4% Similarity=0.053 Sum_probs=10.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALES 23 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~ 23 (79)
|+||+...++......+..++..
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~ 200 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQK 200 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHH
T ss_pred EECCchHhhccCcHHHHHHHHHh
Confidence 46676654433223334444433
No 165
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=37.76 E-value=16 Score=20.11 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=8.9
Q ss_pred CCEEEEEccCc
Q psy10474 27 GRTVLMIAHRL 37 (79)
Q Consensus 27 ~~tvi~vtH~~ 37 (79)
+.++++|+|..
T Consensus 155 ~~~vlvVsHg~ 165 (219)
T 2qni_A 155 RQPIAFVGHGG 165 (219)
T ss_dssp TSCEEEEECHH
T ss_pred CCeEEEEeCHH
Confidence 35899999975
No 166
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=37.45 E-value=41 Score=16.81 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=18.5
Q ss_pred ccccCCCHHHHHHHHHHHHHhcC-CCEEEEEc
Q psy10474 4 LFGSALDNESEKLVQAALESACK-GRTVLMIA 34 (79)
Q Consensus 4 e~~s~lD~~~~~~~~~~~~~~~~-~~tvi~vt 34 (79)
...+.+|...-..+..+...... |..++++.
T Consensus 72 s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 103 (143)
T 3llo_A 72 TQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAG 103 (143)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHTTTCEEEEES
T ss_pred CCCccccHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 44566777766666666666544 55555544
No 167
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=36.82 E-value=15 Score=20.36 Aligned_cols=31 Identities=6% Similarity=-0.007 Sum_probs=19.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
|||||....+.. + ... .+.++++++|+...+
T Consensus 138 ilDg~~~~~~~~----l----~~~-~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 138 LFEGILVFYSQE----I----RDM-FHLRLFVDTDSDVRL 168 (245)
T ss_dssp EEECTTTTTSHH----H----HTT-CSEEEEEECCHHHHH
T ss_pred EEeCccccccHH----H----HHh-cCeEEEEECCHHHHH
Confidence 578877766643 1 111 378999999974333
No 168
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=36.81 E-value=20 Score=19.91 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=9.7
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 174 ~~~~vlvVsHg~ 185 (249)
T 1e58_A 174 SGERVIIAAHGN 185 (249)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCEEEEEcChH
Confidence 577899999974
No 169
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=36.68 E-value=42 Score=16.77 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=16.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHhcCCCEEEEEcc
Q psy10474 2 FRLFGSALDNESEKLVQAALESACKGRTVLMIAH 35 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH 35 (79)
|||.. .+++..+..+...+........+|.+|+
T Consensus 82 ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 82 LSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp EECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred EcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 56654 4556655555555533323344555544
No 170
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=36.65 E-value=21 Score=19.96 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.7
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 183 ~~~~vlvVsHg~ 194 (263)
T 3c7t_A 183 DGGNVIFIGHAI 194 (263)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCeEEEEeCHH
Confidence 467899999975
No 171
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=36.61 E-value=18 Score=20.83 Aligned_cols=21 Identities=14% Similarity=-0.061 Sum_probs=16.2
Q ss_pred ccccCCCHHHHHHHHHHHHHh
Q psy10474 4 LFGSALDNESEKLVQAALESA 24 (79)
Q Consensus 4 e~~s~lD~~~~~~~~~~~~~~ 24 (79)
|||.++|..+-..+.+...+.
T Consensus 191 EPTGGIdl~N~~~I~~i~l~a 211 (249)
T 3m0z_A 191 EPTGGIDLENYSEILKIALDA 211 (249)
T ss_dssp EEBSSCCTTTHHHHHHHHHHH
T ss_pred CCCCCccHhhHHHHHHHHHHc
Confidence 999999999877666655444
No 172
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=36.55 E-value=6.3 Score=21.26 Aligned_cols=24 Identities=4% Similarity=0.007 Sum_probs=11.8
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA 24 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~ 24 (79)
|+||+..-++......+..++...
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~ 183 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLL 183 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHS
T ss_pred EEcChhHHhhhhhHHHHHHHHHhC
Confidence 467777544433333444444433
No 173
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=36.19 E-value=34 Score=19.90 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=24.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
|+||+.. +.......+.+.+++......+|++++.+..+
T Consensus 87 iIdead~-lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 87 IVHDCER-MTQQAANAFLKALEEPPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp EETTGGG-BCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred EeccHHH-hCHHHHHHHHHHHhCCCCCeEEEEEECChHhC
Confidence 3566643 44455566666776655566677788777544
No 174
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=35.55 E-value=7.1 Score=21.30 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=11.4
Q ss_pred CCcccccCCCHHHHHHHHHHHHHh
Q psy10474 1 MFRLFGSALDNESEKLVQAALESA 24 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~ 24 (79)
|+||+...++......+..++...
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~ 199 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENL 199 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTS
T ss_pred EEeChHHHhcCCcHHHHHHHHHhC
Confidence 467777554433233444444433
No 175
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=35.14 E-value=18 Score=21.02 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=16.3
Q ss_pred ccccCCCHHHHHHHHHHHHHh
Q psy10474 4 LFGSALDNESEKLVQAALESA 24 (79)
Q Consensus 4 e~~s~lD~~~~~~~~~~~~~~ 24 (79)
|||.++|..+-..+.+...+.
T Consensus 214 EPTGGIdl~Nf~~I~~i~l~a 234 (275)
T 3m6y_A 214 EPTGGIDKENFETIVRIALEA 234 (275)
T ss_dssp EEBSSCCTTTHHHHHHHHHHT
T ss_pred CCCCCccHhHHHHHHHHHHHc
Confidence 999999999877776655443
No 176
>3pkz_A Recombinase SIN; small serine recombinase, resolvase, DNA, recombination; 1.80A {Staphylococcus aureus}
Probab=34.96 E-value=15 Score=18.23 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=18.1
Q ss_pred CcccccCCCHHHHHHHHHHHHHhcCCCEE
Q psy10474 2 FRLFGSALDNESEKLVQAALESACKGRTV 30 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~~~~~~~~~~tv 30 (79)
++|..||-+...+-.+.+++.....|.++
T Consensus 31 ~~d~~Sg~~~~~Rp~l~~ll~~~~~gd~l 59 (124)
T 3pkz_A 31 FTEKQSGKSIENRPILQKALNFVEMGDRF 59 (124)
T ss_dssp EEEESCSSCSTTCHHHHHHHHHCCTTCEE
T ss_pred EEEcccCCChhcCHHHHHHHHHHHCCCEE
Confidence 44556666544566777778777667433
No 177
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=34.31 E-value=15 Score=22.82 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=25.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHH-hc-CCCEEEEEcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALES-AC-KGRTVLMIAH 35 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~-~~-~~~tvi~vtH 35 (79)
++|+++..|.+.....+...+.. +. .|..+++++.
T Consensus 181 ~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 181 PIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 47899999998877666666664 44 4788888774
No 178
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=33.37 E-value=18 Score=20.87 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=7.0
Q ss_pred ccCCCHHHHHHHHHHHHHhcCCCEEEEEc
Q psy10474 6 GSALDNESEKLVQAALESACKGRTVLMIA 34 (79)
Q Consensus 6 ~s~lD~~~~~~~~~~~~~~~~~~tvi~vt 34 (79)
+|+.|..+...+.+.+.+..+++++|++-
T Consensus 8 ~s~~~~~~~n~~~~~Ms~rL~gKvalVTG 36 (273)
T 4fgs_A 8 SSGVDLGTENLYFQSMTQRLNAKIAVITG 36 (273)
T ss_dssp -----------------CTTTTCEEEEES
T ss_pred ccCCCccccccchhhhcchhCCCEEEEeC
Confidence 57777777766666665545677666543
No 179
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=33.27 E-value=16 Score=19.65 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=19.1
Q ss_pred CCEEEEEeCceEeeecChhHHhh
Q psy10474 43 ADLIVVLQAGQIVEMGNHKSLLA 65 (79)
Q Consensus 43 ~d~v~~l~~G~i~~~~~~~~~~~ 65 (79)
-||-+++++|+++..|..-+..+
T Consensus 113 HDR~I~~dnGW~IkiGRGLD~fq 135 (163)
T 4a5z_A 113 HDREIRFNNGWMIKIGRGLDYFK 135 (163)
T ss_dssp CCCEEEETTSEEEEETTTTCCBC
T ss_pred cceEEEecCCeEEEECCCccccc
Confidence 58999999999999888766554
No 180
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=33.16 E-value=46 Score=16.17 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=8.0
Q ss_pred cCCCHHHHHHHHHHHHHh
Q psy10474 7 SALDNESEKLVQAALESA 24 (79)
Q Consensus 7 s~lD~~~~~~~~~~~~~~ 24 (79)
+.+|......+....+..
T Consensus 57 ~~iDssgl~~L~~~~~~~ 74 (118)
T 3ny7_A 57 PVLDAGGLDAFQRFVKRL 74 (118)
T ss_dssp CCBCHHHHHHHHHHHHHC
T ss_pred CeecHHHHHHHHHHHHHH
Confidence 344444444444444443
No 181
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=32.07 E-value=7.8 Score=20.89 Aligned_cols=22 Identities=14% Similarity=-0.118 Sum_probs=10.2
Q ss_pred CCcccccCCCHHHHHHHHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALE 22 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~ 22 (79)
|+||+...++......+..++.
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~ 176 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAA 176 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHH
T ss_pred EEcCchHHhhhChHHHHHHHHH
Confidence 4677765443322333443443
No 182
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=31.51 E-value=18 Score=21.01 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=20.1
Q ss_pred CCEEEEEeCceEeeecChhHHhhcc
Q psy10474 43 ADLIVVLQAGQIVEMGNHKSLLAKK 67 (79)
Q Consensus 43 ~d~v~~l~~G~i~~~~~~~~~~~~~ 67 (79)
-||-+++++|+++..|..-+..+.+
T Consensus 201 HDR~I~~dnGW~IkigRGLD~fq~~ 225 (257)
T 2ymb_A 201 HDREIRFNNGWMIKIGRGLDYFKKP 225 (257)
T ss_dssp CCCEEEETTSEEEEESSTTCCBCCC
T ss_pred cceeEEecCCcEEEecCccccccCC
Confidence 5888999999999988877665543
No 183
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=31.17 E-value=71 Score=19.59 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCEEEEEccCccccccCCEEEEEeCceEee
Q psy10474 27 GRTVLMIAHRLSTVQNADLIVVLQAGQIVE 56 (79)
Q Consensus 27 ~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 56 (79)
|...+++|..+.--....||+.++.|+|+.
T Consensus 157 G~C~vvmTDGpasg~A~~rI~~i~eGkIv~ 186 (373)
T 4gdi_A 157 GSCFVIVSDGPNVNQSVHRIYELQNGTVQR 186 (373)
T ss_dssp TEEEEEEEECSCGGGCEEEEEEEETTEEEE
T ss_pred CEEEEEEecCCCCCccceEEEEEeCceEEE
Confidence 444456666655555578999999999964
No 184
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=30.98 E-value=14 Score=20.08 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=12.3
Q ss_pred CCcccccCCCHH-HHHHHHHHHHHh
Q psy10474 1 MFRLFGSALDNE-SEKLVQAALESA 24 (79)
Q Consensus 1 ~~de~~s~lD~~-~~~~~~~~~~~~ 24 (79)
|+||+...++.. ....+..++...
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~ 195 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSL 195 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHS
T ss_pred EeCCchHhhcCcchHHHHHHHHHhC
Confidence 467877665542 333444444443
No 185
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.25 E-value=11 Score=17.63 Aligned_cols=21 Identities=5% Similarity=0.126 Sum_probs=14.3
Q ss_pred CCcccccCCCHHHHHHHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAAL 21 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~ 21 (79)
||||.|.+--...+..+..+.
T Consensus 15 ildevtdgapdeareriekla 35 (101)
T 2lse_A 15 ILDEVTDGAPDEARERIEKLA 35 (101)
Confidence 588888887666666665544
No 186
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=29.59 E-value=30 Score=19.51 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=9.6
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 192 ~~~~vlvVsHg~ 203 (267)
T 3d8h_A 192 SGKSVLVSAHGN 203 (267)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCeEEEEeCHH
Confidence 567899999864
No 187
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=29.31 E-value=31 Score=19.59 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=9.9
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 174 ~~~~vlvVsHg~ 185 (265)
T 1rii_A 174 VGKTVLIVAHGN 185 (265)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCeEEEEeChH
Confidence 578999999975
No 188
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=28.99 E-value=23 Score=19.94 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=9.6
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 179 ~~~~vlvVsHg~ 190 (267)
T 2hhj_A 179 RGKTILISAHGN 190 (267)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCEEEEEcCcH
Confidence 567899999864
No 189
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=28.82 E-value=29 Score=19.53 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=9.9
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 193 ~~~~vlvVsHg~ 204 (273)
T 3d4i_A 193 DMGITLIVSHSS 204 (273)
T ss_dssp CCSEEEEEECTT
T ss_pred CCCEEEEEechH
Confidence 367999999985
No 190
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=28.64 E-value=54 Score=21.33 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=24.2
Q ss_pred CCcccccCCC---HHHHHHHHHHHHHhcC-CCEEEEEccCcc
Q psy10474 1 MFRLFGSALD---NESEKLVQAALESACK-GRTVLMIAHRLS 38 (79)
Q Consensus 1 ~~de~~s~lD---~~~~~~~~~~~~~~~~-~~tvi~vtH~~~ 38 (79)
|+||...-+. ......+..+.+..+. |..+|++|.++.
T Consensus 348 VIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 348 VVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp EESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred EEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 4677765543 2233445555555544 889999999986
No 191
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=28.64 E-value=28 Score=20.39 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=14.1
Q ss_pred CCcccccCCCHHHHHHHHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALE 22 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~ 22 (79)
|+||+...++......+..++.
T Consensus 168 IiDEaH~~~~~~~~~~~~~i~~ 189 (400)
T 1s2m_A 168 IMDEADKMLSRDFKTIIEQILS 189 (400)
T ss_dssp EEESHHHHSSHHHHHHHHHHHT
T ss_pred EEeCchHhhhhchHHHHHHHHH
Confidence 5799988887654444444443
No 192
>2uvp_A HOBA; hypothetical protein, unknown function, DNAA, SIS fold, DNA replication; 1.7A {Helicobacter pylori} PDB: 2uvp_B 2wp0_A
Probab=28.32 E-value=66 Score=17.73 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCCEEEEEccCc
Q psy10474 17 VQAALESACKGRTVLMIAHRL 37 (79)
Q Consensus 17 ~~~~~~~~~~~~tvi~vtH~~ 37 (79)
+...+.....|+|+|++|..-
T Consensus 43 ~a~~l~~il~G~s~iviTD~~ 63 (186)
T 2uvp_A 43 IAQTISHVLNGGSLLVSADSS 63 (186)
T ss_dssp HHHHHHHHHTTCEEEEEECGG
T ss_pred HHHHHHHHhCCCeEEEEeCch
Confidence 344555566899999998543
No 193
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=27.95 E-value=73 Score=16.84 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=18.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLS 38 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~ 38 (79)
++||+.- +++.....+..+.. .+..+++..++.+
T Consensus 81 iIDE~Q~-~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 81 FIDEVQF-FNPSLFEVVKDLLD---RGIDVFCAGLDLT 114 (184)
T ss_dssp EECCGGG-SCTTHHHHHHHHHH---TTCEEEEEEESBC
T ss_pred EEECccc-CCHHHHHHHHHHHH---CCCCEEEEeeccc
Confidence 4688765 54433333332322 3777777776443
No 194
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=27.73 E-value=81 Score=17.45 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=9.9
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 183 ~~~~vlvVsHg~ 194 (258)
T 3kkk_A 183 ANKKVMVAAHGN 194 (258)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCEEEEEcCHH
Confidence 578899999864
No 195
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=27.48 E-value=47 Score=17.84 Aligned_cols=12 Identities=42% Similarity=0.863 Sum_probs=9.7
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 141 ~~~~vlvVsHg~ 152 (207)
T 1h2e_A 141 EGETVLIVTHGV 152 (207)
T ss_dssp TTCEEEEEECHH
T ss_pred CCCeEEEEcCHH
Confidence 467999999974
No 196
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=27.42 E-value=91 Score=17.75 Aligned_cols=44 Identities=20% Similarity=0.065 Sum_probs=27.1
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccC---------c-ccc-ccCCEEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHR---------L-STV-QNADLIVVL 49 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~---------~-~~~-~~~d~v~~l 49 (79)
++||+.-..+ ...+.+.+.. .+..+|+..++ . ..+ ..+|.|.-|
T Consensus 95 iIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtel 149 (234)
T 2orv_A 95 GIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL 149 (234)
T ss_dssp EESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred EEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEee
Confidence 4789888864 2233333333 58899998888 2 233 458888754
No 197
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=27.21 E-value=89 Score=17.58 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=20.7
Q ss_pred CCcccccCC--------CHHHHHHHHHHHHHhcCCCEEEEEcc
Q psy10474 1 MFRLFGSAL--------DNESEKLVQAALESACKGRTVLMIAH 35 (79)
Q Consensus 1 ~~de~~s~l--------D~~~~~~~~~~~~~~~~~~tvi~vtH 35 (79)
++||...-. +......+...++.......+|++++
T Consensus 135 ~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~ 177 (309)
T 3syl_A 135 FIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY 177 (309)
T ss_dssp EEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC
T ss_pred EEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 367766432 55555666666665544566667764
No 198
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=27.15 E-value=74 Score=16.62 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCCEEEEEccCcc
Q psy10474 15 KLVQAALESACKGRTVLMIAHRLS 38 (79)
Q Consensus 15 ~~~~~~~~~~~~~~tvi~vtH~~~ 38 (79)
.++...+... . .++++|+|..-
T Consensus 115 ~R~~~~l~~l-~-~~vlvVsHg~~ 136 (177)
T 1v37_A 115 ERVFRFLEGL-K-APAVLFTHGGV 136 (177)
T ss_dssp HHHHHHHHHC-C-SCEEEEECHHH
T ss_pred HHHHHHHHHc-C-CCEEEEcCHHH
Confidence 4455556655 4 78999999853
No 199
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=27.06 E-value=94 Score=17.79 Aligned_cols=37 Identities=3% Similarity=0.037 Sum_probs=21.3
Q ss_pred CCcccccCCC-HHHHHHHHHHHHHhc-CCCEEEEEccCc
Q psy10474 1 MFRLFGSALD-NESEKLVQAALESAC-KGRTVLMIAHRL 37 (79)
Q Consensus 1 ~~de~~s~lD-~~~~~~~~~~~~~~~-~~~tvi~vtH~~ 37 (79)
++||+..--. ...+..+...+.... .+..+|++++..
T Consensus 103 ~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 103 LLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred EEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4788876432 245555666665443 456666666543
No 200
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=26.84 E-value=7.8 Score=21.32 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=10.3
Q ss_pred CCcccccCCCHHHHHHHHHHHH
Q psy10474 1 MFRLFGSALDNESEKLVQAALE 22 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~ 22 (79)
|+||+..-+|......+..++.
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~ 202 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVD 202 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHT
T ss_pred EEeCHHHHhhhCcHHHHHHHHH
Confidence 4677765444332333343443
No 201
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=26.75 E-value=91 Score=17.55 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=22.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLST 39 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~ 39 (79)
++||+.. +++.....+...++....+..+|+++.....
T Consensus 115 iiDe~~~-l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~ 152 (327)
T 1iqp_A 115 FLDEADA-LTQDAQQALRRTMEMFSSNVRFILSCNYSSK 152 (327)
T ss_dssp EEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred EEeCCCc-CCHHHHHHHHHHHHhcCCCCeEEEEeCCccc
Confidence 4677644 4555566666666665445566667766543
No 202
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=26.60 E-value=40 Score=18.18 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=9.8
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 143 ~~~~vlvVsHg~ 154 (208)
T 2a6p_A 143 SSRDVLFVSHGH 154 (208)
T ss_dssp TTSCEEEEECHH
T ss_pred CCCcEEEEeCHH
Confidence 467899999974
No 203
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=26.33 E-value=10 Score=21.09 Aligned_cols=10 Identities=10% Similarity=0.106 Sum_probs=5.0
Q ss_pred CCcccccCCC
Q psy10474 1 MFRLFGSALD 10 (79)
Q Consensus 1 ~~de~~s~lD 10 (79)
|+||+...++
T Consensus 191 ViDEah~l~~ 200 (249)
T 3ber_A 191 VMDEADRILN 200 (249)
T ss_dssp EECSHHHHHH
T ss_pred EEcChhhhhc
Confidence 3566654333
No 204
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=26.13 E-value=16 Score=21.53 Aligned_cols=32 Identities=6% Similarity=0.055 Sum_probs=18.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLM 32 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~ 32 (79)
|+||+...++......+..++.....+..+++
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~ 215 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 215 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEE
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEE
Confidence 57898877765544555555543333444443
No 205
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=25.95 E-value=46 Score=19.73 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=14.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACK 26 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~ 26 (79)
|+||+....+......+...+.....
T Consensus 130 IiDEaH~~~~~~~~~~~~~~~~~~~~ 155 (494)
T 1wp9_A 130 VFDEAHRAVGNYAYVFIAREYKRQAK 155 (494)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHCS
T ss_pred EEECCcccCCCCcHHHHHHHHHhcCC
Confidence 58999987754333334444443333
No 206
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=25.46 E-value=82 Score=16.56 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=17.5
Q ss_pred CCEEEEEccCcccc---ccCCEEEEEeC
Q psy10474 27 GRTVLMIAHRLSTV---QNADLIVVLQA 51 (79)
Q Consensus 27 ~~tvi~vtH~~~~~---~~~d~v~~l~~ 51 (79)
+..+|+.+|.+... ..++.+++++.
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 55778788877543 34899988854
No 207
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=25.38 E-value=69 Score=17.15 Aligned_cols=12 Identities=50% Similarity=0.661 Sum_probs=9.6
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 154 ~~~~vlvVsHg~ 165 (211)
T 1fzt_A 154 KGEKVLIAAHGN 165 (211)
T ss_dssp HTCCEEEESCHH
T ss_pred CCCeEEEEeChH
Confidence 367899999975
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.33 E-value=1.1e+02 Score=17.78 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=21.6
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLS 38 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~ 38 (79)
++||+.. +.......+...++.......+|+++....
T Consensus 115 iiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 115 ILDEADA-MTNAAQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp EETTGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred EEeCCCC-CCHHHHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 3566643 444555666666766555556666776554
No 209
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.25 E-value=68 Score=18.05 Aligned_cols=38 Identities=5% Similarity=0.128 Sum_probs=21.5
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLST 39 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~ 39 (79)
++||+.. +.......+...++....+..+|+++.....
T Consensus 112 iiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 112 ILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp EEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred EEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 3566543 3444445556666655455666777766543
No 210
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=24.88 E-value=20 Score=20.81 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=20.3
Q ss_pred CCcccccCCCHH-HHHHHHHHHHHhc-----CCCEEEEEccCcc
Q psy10474 1 MFRLFGSALDNE-SEKLVQAALESAC-----KGRTVLMIAHRLS 38 (79)
Q Consensus 1 ~~de~~s~lD~~-~~~~~~~~~~~~~-----~~~tvi~vtH~~~ 38 (79)
+|||+....+.. ....+..++.... .+..+|++++...
T Consensus 135 ilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 135 VLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp EEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred EEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 467776554321 3345555554332 2557788888773
No 211
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=24.87 E-value=21 Score=18.76 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=12.0
Q ss_pred ccCCCHHHHHHHHHHHH
Q psy10474 6 GSALDNESEKLVQAALE 22 (79)
Q Consensus 6 ~s~lD~~~~~~~~~~~~ 22 (79)
+|++|+.....+.+.+.
T Consensus 147 ~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 147 TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp CCTTTCTTHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHH
Confidence 89999987665555443
No 212
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=24.87 E-value=43 Score=19.44 Aligned_cols=35 Identities=3% Similarity=-0.025 Sum_probs=18.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccC
Q psy10474 2 FRLFGSALDNESEKLVQAALESACKGRTVLMIAHR 36 (79)
Q Consensus 2 ~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~ 36 (79)
+||+...+.......+...++....+..+|+++..
T Consensus 82 i~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 82 LLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp EECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred EECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 56665545444445555556544445555555544
No 213
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=24.52 E-value=56 Score=18.98 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=17.2
Q ss_pred CCcccccCCCH-HHHHHHHHHHHHhcCCCEEEE
Q psy10474 1 MFRLFGSALDN-ESEKLVQAALESACKGRTVLM 32 (79)
Q Consensus 1 ~~de~~s~lD~-~~~~~~~~~~~~~~~~~tvi~ 32 (79)
|+||+...++. .....+...+........+++
T Consensus 157 ViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~ 189 (391)
T 1xti_A 157 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 189 (391)
T ss_dssp EECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEE
T ss_pred EEeCHHHHhhccchHHHHHHHHhhCCCCceEEE
Confidence 57999887763 333444444443333444444
No 214
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=24.25 E-value=32 Score=19.12 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=9.8
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 181 ~~~~vlvVsHg~ 192 (257)
T 3gp3_A 181 AGKQVLIAAHGN 192 (257)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCEEEEEeCcH
Confidence 578999999864
No 215
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=24.22 E-value=18 Score=20.82 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=17.0
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIA 34 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vt 34 (79)
|+||+....+......+...+........+++.|
T Consensus 152 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~S 185 (367)
T 1hv8_A 152 ILDEADEMLNMGFIKDVEKILNACNKDKRILLFS 185 (367)
T ss_dssp EEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEEC
T ss_pred EEeCchHhhhhchHHHHHHHHHhCCCCceEEEEe
Confidence 5688876655443344444444333344444433
No 216
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=24.08 E-value=11 Score=21.89 Aligned_cols=12 Identities=0% Similarity=-0.056 Sum_probs=10.2
Q ss_pred CCcccccCCCHH
Q psy10474 1 MFRLFGSALDNE 12 (79)
Q Consensus 1 ~~de~~s~lD~~ 12 (79)
||||+++++|+.
T Consensus 157 IlEG~~~~ld~~ 168 (290)
T 1odf_A 157 ILEGWFLGFNPI 168 (290)
T ss_dssp EEEESSTTCCCC
T ss_pred EEeCccccCCcc
Confidence 589999999974
No 217
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=24.02 E-value=39 Score=18.28 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=8.7
Q ss_pred CCEEEEEccCc
Q psy10474 27 GRTVLMIAHRL 37 (79)
Q Consensus 27 ~~tvi~vtH~~ 37 (79)
..++++|+|..
T Consensus 141 ~~~vlvVsHg~ 151 (213)
T 3hjg_A 141 NDNLLIVTHGG 151 (213)
T ss_dssp CSCEEEEECHH
T ss_pred CCeEEEEeCHH
Confidence 37899999974
No 218
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=23.89 E-value=94 Score=16.72 Aligned_cols=28 Identities=7% Similarity=0.130 Sum_probs=20.8
Q ss_pred cCCCHHHHHHHHHHHHHhcC-CCEEEEEc
Q psy10474 7 SALDNESEKLVQAALESACK-GRTVLMIA 34 (79)
Q Consensus 7 s~lD~~~~~~~~~~~~~~~~-~~tvi~vt 34 (79)
++|++.....+.+++....+ |..+.+++
T Consensus 31 ~gl~~~aa~al~~m~~~a~~~Gi~l~i~s 59 (179)
T 2vo9_A 31 GGMYKITSDKTRNVIKKMAKEGIYLCVAQ 59 (179)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57999999999998887755 65554443
No 219
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=23.88 E-value=44 Score=18.81 Aligned_cols=12 Identities=58% Similarity=0.869 Sum_probs=9.8
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 197 ~~~~vlvVsHg~ 208 (268)
T 4eo9_A 197 TGRTVLIVAHGN 208 (268)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCEEEEEeCHH
Confidence 578899999864
No 220
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=23.85 E-value=37 Score=19.07 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=9.1
Q ss_pred CCEEEEEccCc
Q psy10474 27 GRTVLMIAHRL 37 (79)
Q Consensus 27 ~~tvi~vtH~~ 37 (79)
+.++++|+|..
T Consensus 168 ~~~vliVsHg~ 178 (265)
T 3f3k_A 168 ASDIMVFAHGH 178 (265)
T ss_dssp CCEEEEEECHH
T ss_pred CCcEEEEeChH
Confidence 57899999965
No 221
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=23.74 E-value=33 Score=19.36 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=9.8
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 199 ~~~~vlvVsHg~ 210 (274)
T 4emb_A 199 EGKKVIVAAHGN 210 (274)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCEEEEEeCHH
Confidence 578899999864
No 222
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=23.39 E-value=1e+02 Score=19.57 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=20.9
Q ss_pred CCEEEEEccCccccccCCEEEEEeCceEeee
Q psy10474 27 GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 57 (79)
Q Consensus 27 ~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~ 57 (79)
|...++.|..+.--....|++.++.|+|+..
T Consensus 236 GtC~vvmTDGpa~~~A~~rI~~i~eGkIv~~ 266 (469)
T 4b7j_A 236 GSCFTVMTDGPSDGQASYKIFRIEKGKIVKS 266 (469)
T ss_dssp TEEEEEEEESCSSSCCEEEEEEEETTEEEEE
T ss_pred CEEEEEEecCCCCCccceeEEEEecceEEEE
Confidence 3444556655544444689999999999754
No 223
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=22.38 E-value=18 Score=20.28 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=5.1
Q ss_pred CCcccccCCC
Q psy10474 1 MFRLFGSALD 10 (79)
Q Consensus 1 ~~de~~s~lD 10 (79)
|+||+..-+|
T Consensus 206 ViDEah~l~~ 215 (262)
T 3ly5_A 206 VIDEADRILD 215 (262)
T ss_dssp EECSHHHHHH
T ss_pred EEcChHHHhh
Confidence 3566654443
No 224
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=22.02 E-value=1.1e+02 Score=20.01 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=23.3
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV 40 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~ 40 (79)
|+| ++.++++.+...+..... .+..+|++.|-++..
T Consensus 104 VvD-~~~g~~~qt~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 104 AVS-AEAGVQVGTERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEE-TTTCSCHHHHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred EEc-CCcccchhHHHHHHHHHH---ccCCEEEEecCCchh
Confidence 356 788888877654443322 367778888877653
No 225
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=21.89 E-value=61 Score=18.04 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHh---c-C-CCEEEEEccCcccc
Q psy10474 10 DNESEKLVQAALESA---C-K-GRTVLMIAHRLSTV 40 (79)
Q Consensus 10 D~~~~~~~~~~~~~~---~-~-~~tvi~vtH~~~~~ 40 (79)
+......+..++... . . +..+|.+++.+..+
T Consensus 134 ~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 134 DREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp GGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 444555566665543 1 2 34566677766544
No 226
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=21.24 E-value=49 Score=19.51 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=8.1
Q ss_pred CCEEEEEccCc
Q psy10474 27 GRTVLMIAHRL 37 (79)
Q Consensus 27 ~~tvi~vtH~~ 37 (79)
+.++|++.|..
T Consensus 264 ~~~Vi~~nq~~ 274 (343)
T 1v5w_A 264 NVAVFVTNQMT 274 (343)
T ss_dssp TCEEEEEECC-
T ss_pred CCEEEEEeece
Confidence 78888888754
No 227
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=21.02 E-value=86 Score=16.36 Aligned_cols=12 Identities=0% Similarity=-0.081 Sum_probs=4.2
Q ss_pred CCcccccCCCHH
Q psy10474 1 MFRLFGSALDNE 12 (79)
Q Consensus 1 ~~de~~s~lD~~ 12 (79)
|+||+...++..
T Consensus 167 IiDEah~~~~~~ 178 (216)
T 3b6e_A 167 IIDECHHTNKEA 178 (216)
T ss_dssp EETTC-------
T ss_pred EEECchhhccCC
Confidence 589999877654
No 228
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=20.88 E-value=1.2e+02 Score=16.65 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=18.9
Q ss_pred cCCCHHHHHHHHHHHHHhcC-CCEEE
Q psy10474 7 SALDNESEKLVQAALESACK-GRTVL 31 (79)
Q Consensus 7 s~lD~~~~~~~~~~~~~~~~-~~tvi 31 (79)
++||+.....+.+++..... |..+.
T Consensus 31 ~gLdp~~a~al~~m~~aA~~~Gi~l~ 56 (179)
T 1xp2_A 31 GGMYKITSDKTRNVIKKMAKEGIYLC 56 (179)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCeEE
Confidence 68999999989888887754 55543
No 229
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=20.76 E-value=20 Score=21.00 Aligned_cols=44 Identities=7% Similarity=0.089 Sum_probs=23.2
Q ss_pred CCcccccCCCHHHHHHHHHHHHHhcCCCEEEEEccCcccc-cc-CCEEEEEeC
Q psy10474 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTV-QN-ADLIVVLQA 51 (79)
Q Consensus 1 ~~de~~s~lD~~~~~~~~~~~~~~~~~~tvi~vtH~~~~~-~~-~d~v~~l~~ 51 (79)
|||||++.+|+... .+... -...|++.|+.+.. .+ ..|...+++
T Consensus 199 IlDep~~~~d~~~~-----~l~~~--~D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 199 ILEGLNVLQTGPTL-----MVSDL--FDFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEECTTTTCCCSSC-----CGGGG--CSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred EECCccccCCcchH-----HHHHh--cCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 58999999875210 01111 12456777776544 22 445444444
No 230
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=20.53 E-value=1.1e+02 Score=18.38 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=7.7
Q ss_pred CCEEEEEccCc
Q psy10474 27 GRTVLMIAHRL 37 (79)
Q Consensus 27 ~~tvi~vtH~~ 37 (79)
+.++|++.|-.
T Consensus 190 ~~~VI~~nq~~ 200 (356)
T 1u94_A 190 NTLLIFINQIR 200 (356)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEeccc
Confidence 88999888754
No 231
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=20.10 E-value=1.3e+02 Score=16.82 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=9.7
Q ss_pred CCCEEEEEccCc
Q psy10474 26 KGRTVLMIAHRL 37 (79)
Q Consensus 26 ~~~tvi~vtH~~ 37 (79)
.+.++++|+|..
T Consensus 177 ~~~~vlvVsHg~ 188 (262)
T 1yfk_A 177 EGKRVLIAAHGN 188 (262)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCeEEEEcChH
Confidence 577899999974
No 232
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=20.06 E-value=82 Score=14.83 Aligned_cols=13 Identities=0% Similarity=0.028 Sum_probs=9.1
Q ss_pred CEEEEEeCceEee
Q psy10474 44 DLIVVLQAGQIVE 56 (79)
Q Consensus 44 d~v~~l~~G~i~~ 56 (79)
-.++.+++|+|++
T Consensus 100 ~~ifr~~dGkI~e 112 (117)
T 3ff2_A 100 VAVYSFEGDKCSR 112 (117)
T ss_dssp EEEEEEETTEEEE
T ss_pred EEEEEEECCEEEE
Confidence 3456678898875
Done!