RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10474
(79 letters)
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 125 bits (317), Expect = 6e-38
Identities = 46/71 (64%), Positives = 55/71 (77%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESEKLVQ AL+ A KGRT ++IAHRLST++NADLI VLQ GQ+VE G H L+A+
Sbjct: 168 SALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227
Query: 67 KGHYWTLMNQQ 77
KG Y L+ Q
Sbjct: 228 KGVYAKLVKAQ 238
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 111 bits (279), Expect = 3e-32
Identities = 43/67 (64%), Positives = 51/67 (76%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE+LVQAALE K RT +IAHRLST++NAD IVVL+ G+IVE G H+ LLA+
Sbjct: 167 SALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226
Query: 67 KGHYWTL 73
G Y L
Sbjct: 227 GGVYAKL 233
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 109 bits (275), Expect = 1e-31
Identities = 39/71 (54%), Positives = 50/71 (70%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD +E+ +QAAL KGRT ++IAHRLST+ NAD I+VL+ G+IVE G H+ LLAK
Sbjct: 166 SALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225
Query: 67 KGHYWTLMNQQ 77
G Y + Q
Sbjct: 226 GGLYAEMWKAQ 236
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 103 bits (258), Expect = 1e-27
Identities = 45/72 (62%), Positives = 53/72 (73%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALDNESE+LVQAALE +GRT L+IAHRLST++ AD IVV+ G+IVE G H LLA+
Sbjct: 498 SALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR 557
Query: 67 KGHYWTLMNQQN 78
G Y L N Q
Sbjct: 558 NGLYAQLHNMQF 569
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 97.7 bits (244), Expect = 4e-27
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
S +D E+EKL+Q ALE KGRT ++IAHRLST++NAD I+VL G+I+E G H LLAK
Sbjct: 168 SNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227
Query: 67 KG 68
KG
Sbjct: 228 KG 229
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 95.8 bits (239), Expect = 5e-25
Identities = 37/72 (51%), Positives = 51/72 (70%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD E+E ++ L +GRTV++IAHRLST+++AD I+VL G+IVE G+H+ LLA+
Sbjct: 638 SALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697
Query: 67 KGHYWTLMNQQN 78
G Y L QQ
Sbjct: 698 GGLYARLYQQQE 709
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 95.1 bits (237), Expect = 1e-24
Identities = 39/71 (54%), Positives = 50/71 (70%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE+ +QAAL+ K RT L+IAHRLST++ AD I+V++ G+IVE G H LLA+
Sbjct: 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568
Query: 67 KGHYWTLMNQQ 77
G Y L Q
Sbjct: 569 NGVYAQLHKMQ 579
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 92.1 bits (229), Expect = 1e-23
Identities = 42/71 (59%), Positives = 49/71 (69%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE+LVQ ALE+ KGRT L+IAHRL+TV AD IVV+ G+IV G H L+AK
Sbjct: 505 SALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564
Query: 67 KGHYWTLMNQQ 77
G Y L Q
Sbjct: 565 GGLYARLARLQ 575
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 91.6 bits (228), Expect = 1e-23
Identities = 36/64 (56%), Positives = 45/64 (70%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD +E+ +QAAL GRT L+IAHRLST+ +AD I+VL G+IVE G H+ LLA
Sbjct: 428 SALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487
Query: 67 KGHY 70
G Y
Sbjct: 488 GGLY 491
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 88.7 bits (220), Expect = 1e-23
Identities = 38/71 (53%), Positives = 49/71 (69%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE + + C GRTV++IAHRLSTV+NAD I+V++ G+IVE G+H LLA+
Sbjct: 167 SALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226
Query: 67 KGHYWTLMNQQ 77
G Y L Q
Sbjct: 227 NGLYAYLYQLQ 237
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 91.3 bits (227), Expect = 2e-23
Identities = 42/71 (59%), Positives = 51/71 (71%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD E+E L+Q AL+ KGRT L+IAHRLST++NAD I+VL G+IVE G H+ LLAK
Sbjct: 494 SALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553
Query: 67 KGHYWTLMNQQ 77
G Y L Q
Sbjct: 554 GGLYARLYQAQ 564
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 90.6 bits (225), Expect = 3e-23
Identities = 39/71 (54%), Positives = 49/71 (69%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE L+ + C+GRTV++IAHRLSTV+ D I+VL+ GQI E G H+ LLA
Sbjct: 622 SALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681
Query: 67 KGHYWTLMNQQ 77
+G Y L QQ
Sbjct: 682 QGLYARLWQQQ 692
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 85.0 bits (211), Expect = 3e-21
Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD E+E V+AAL+ KGRT +IAHRLSTV+NAD I+V G++VE G+ L+A+
Sbjct: 500 SALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559
Query: 67 KGHYWTLMNQQ 77
G + L+ Q
Sbjct: 560 GGRFAALLRAQ 570
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 80.0 bits (198), Expect = 2e-19
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
+ LD E+E+++ AL+ K +TVL+I HRL +AD IVVL G++VE G H+ L K
Sbjct: 485 AHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544
Query: 67 KGHYWTLMNQQ 77
+G Y L+ QQ
Sbjct: 545 QGLYANLLKQQ 555
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 79.4 bits (196), Expect = 3e-19
Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD E E+L+Q + RTVL+IAHRLSTV+ AD I+VL+ G +VEMG HK L+
Sbjct: 646 SALDAECEQLLQESRSR--ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703
Query: 67 KGHYWTL 73
+G Y L
Sbjct: 704 QGCYKHL 710
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 75.5 bits (187), Expect = 5e-19
Identities = 26/47 (55%), Positives = 37/47 (78%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 53
SALD E+E L+ AL + KG+TV++IAHRLST+++AD I+VL G+
Sbjct: 125 SALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 76.9 bits (190), Expect = 2e-18
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALDN ++ +V +LE R V IAHRLST++NAD I VL AG++V+ G + L+A+
Sbjct: 617 SALDNRTQAIVSESLERLKVTRIV--IAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674
Query: 67 KGHYWTLMNQQ 77
+G + L +Q
Sbjct: 675 EGLFAQLARRQ 685
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 74.1 bits (183), Expect = 4e-18
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGN 59
+++D E++ L+Q + A K TVL IAHRL T+ ++D I+VL G++VE +
Sbjct: 168 ASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 75.0 bits (185), Expect = 1e-17
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD E+EK++ L +G T +++AHRLST+++ D I+VL+ G++V+ G H+ L A
Sbjct: 644 SALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701
Query: 67 KGHY 70
G Y
Sbjct: 702 GGAY 705
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 73.7 bits (182), Expect = 3e-17
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 9 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKG 68
LD E+E+ + L + +TVLMI HRL+ ++ D I V+ GQI+E G H+ LLA++G
Sbjct: 506 LDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG 565
Query: 69 HYWTLMNQQ 77
Y+ L +
Sbjct: 566 RYYQLKQRL 574
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 71.1 bits (174), Expect = 2e-16
Identities = 31/68 (45%), Positives = 49/68 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD E+E V+ A+++ K RT +IAHRLSTV+NADL++ L G+++E G+ + L+ K
Sbjct: 500 SALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559
Query: 67 KGHYWTLM 74
G ++ L+
Sbjct: 560 DGRFYKLL 567
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 71.3 bits (175), Expect = 3e-16
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 9 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKG 68
+D+ +E+ +Q AL + + T+++IAHRLST+ AD I+VL GQ VE G H+ LLA +G
Sbjct: 507 IDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQG 566
Query: 69 HYWTLMNQQ 77
YW + Q
Sbjct: 567 RYWQMYQLQ 575
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 66.8 bits (164), Expect = 9e-15
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 9 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKG 68
LD SE+LV AL +A + +T LM+ H+L + D I V+Q GQIV+ G++ L G
Sbjct: 516 LDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGG 575
Query: 69 HYWTLMNQQN 78
+ TL+ +
Sbjct: 576 LFATLLAHRQ 585
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 63.9 bits (156), Expect = 9e-14
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
LD +E+ V A L +G+T+LM+ HRL ++ D I+VL G+I+E G H LLA
Sbjct: 503 EGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN 562
Query: 67 KGHYWTLM 74
G Y L
Sbjct: 563 NGRYKRLY 570
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 61.3 bits (149), Expect = 3e-13
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI 54
SALD ESE+ VQ AL + RTVL+IAHRLSTV+ AD I+VL G+I
Sbjct: 179 SALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 57.0 bits (138), Expect = 2e-11
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SA+D +E + L +GRTV++ AHRLS + A I+V+Q G I + GNH L +
Sbjct: 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ 539
Query: 67 KGHY 70
G Y
Sbjct: 540 SGWY 543
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 54.0 bits (130), Expect = 3e-10
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 28 RTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMN 75
+T++ +AHRLS + +D I+VL G+I+E G+H LL + G Y +L++
Sbjct: 660 KTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 53.6 bits (129), Expect = 4e-10
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
+A+D ++ L+Q + K T+L+IAHRL+T+ + D I+VL AG++VE ++LL+
Sbjct: 1403 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462
Query: 67 KGHYWTLMNQ 76
+G ++ M Q
Sbjct: 1463 EGSAFSKMVQ 1472
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 52.7 bits (127), Expect = 7e-10
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 49
+ LD E+E V AL + +GRTVL++ HRL+ AD IVVL
Sbjct: 487 AHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 49.9 bits (119), Expect = 6e-09
Identities = 24/61 (39%), Positives = 43/61 (70%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
+++D +E ++Q + +A RTV+ IAHR+ST+ +ADL++VL G +VE ++LLA+
Sbjct: 185 ASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244
Query: 67 K 67
+
Sbjct: 245 E 245
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 50.3 bits (120), Expect = 6e-09
Identities = 22/67 (32%), Positives = 45/67 (67%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
+A+D E++ L+Q+ + + + TVL IAHRL+T+ + ++VL G++ E G +LL +
Sbjct: 1450 AAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509
Query: 67 KGHYWTL 73
+G ++++
Sbjct: 1510 RGIFYSM 1516
Score = 42.6 bits (100), Expect = 3e-06
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHY 70
K +T +++ H +S + D+I+V+ G+I EMG+++ LL + G +
Sbjct: 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAF 855
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 49.9 bits (120), Expect = 7e-09
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIV 55
SA+DN SE+ + L+ G+T++++ HR S + D I+V+ G+IV
Sbjct: 630 SAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIV 678
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 48.8 bits (117), Expect = 9e-09
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 7 SALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQI 54
S LD E E+ + A+ + G T ++IAHR T+ +AD I+VL+ G++
Sbjct: 125 SHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 49.1 bits (118), Expect = 1e-08
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIV 55
SA+D SE+ ++ L +T+++I HR S + D I+V+ +G+IV
Sbjct: 169 SAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 49.6 bits (118), Expect = 1e-08
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
+++D ++ L+Q + K T+L+IAHRL+T+ + D I+VL +GQ++E + + LL++
Sbjct: 1400 ASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459
Query: 67 KGHYWTLMNQ 76
+ M
Sbjct: 1460 DTSAFFRMVH 1469
Score = 26.9 bits (59), Expect = 1.3
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 7 SALDNE-SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
SALD + ++ + ++ KG+T +++ ++L + D I+++ G I E G L
Sbjct: 769 SALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828
Query: 66 KKGHYWTLM 74
+ LM
Sbjct: 829 SGSLFKKLM 837
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 48.6 bits (116), Expect = 1e-08
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG 58
+++D ++ L+Q + T+L IAHRL T+ + D I+V+ AG++ E
Sbjct: 154 ASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 46.6 bits (111), Expect = 1e-07
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 7 SALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
S LD E E+ L A +G TV++I HR S + D I+VLQ G+I G +LA
Sbjct: 483 SNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
Query: 66 K 66
K
Sbjct: 543 K 543
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 46.3 bits (110), Expect = 2e-07
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 8 ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSL 63
ALD + +QA + SA TV+ IAHRL TV D I+V+ G + EMG+ + L
Sbjct: 1480 ALDRQ----IQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPREL 1531
Score = 32.8 bits (75), Expect = 0.009
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 7 SALDNE-SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
SALD E++V+ A G+T ++ H++ V AD +V L G++ G+ +
Sbjct: 811 SALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 44.2 bits (105), Expect = 8e-07
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 7 SALDNESEKLVQAALESA-CKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
S LD+E E + AA+ +A +G TV++IAHR S + + D I+VLQ G+I G + +LA
Sbjct: 501 SNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
Query: 66 K 66
K
Sbjct: 561 K 561
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 42.3 bits (100), Expect = 2e-06
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 9 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG 58
LD +E+ + + + K +T++ I H L+ +++ D I+ L+ G+I+ G
Sbjct: 129 LDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 42.2 bits (100), Expect = 4e-06
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSL 63
+ALD ++ + L+ + G VL I H L V + AD +VV+ G+IVE G + +
Sbjct: 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI 242
Query: 64 LAKKGHYWT 72
L+ H +T
Sbjct: 243 LSNPQHPYT 251
Score = 36.8 bits (86), Expect = 4e-04
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59
G T L I+H L+ V+ AD + V+ G+IVE G
Sbjct: 480 GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 41.2 bits (96), Expect = 1e-05
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 4/46 (8%)
Query: 7 SALDNESEKLVQAALESACKG---RTVLMIAHRLSTVQNADLIVVL 49
S+LDN+SE LVQ + + KG R ++IAHRLST++ A+ I VL
Sbjct: 608 SSLDNKSEYLVQKTINN-LKGNENRITIIIAHRLSTIRYANTIFVL 652
Score = 38.1 bits (88), Expect = 1e-04
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 11/68 (16%)
Query: 7 SALDNESEKLVQAAL----ESACKGRTVLMIAHRLSTVQNADLIVVL----QAGQIVEM- 57
S+LD+ SEKL++ + + A +T++ IAHR+++++ +D IVV + G V+
Sbjct: 1387 SSLDSNSEKLIEKTIVDIKDKA--DKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAH 1444
Query: 58 GNHKSLLA 65
G H+ LL+
Sbjct: 1445 GTHEELLS 1452
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 40.6 bits (96), Expect = 1e-05
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
SALD + + L+ + G T+L I H L V AD + V+ AG+IVE G
Sbjct: 174 SALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 39.1 bits (92), Expect = 5e-05
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 26 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH--YWTLMN 75
KG +++I H L V AD + V+ AG+IVE G + + H L+N
Sbjct: 203 KGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLN 255
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 38.0 bits (89), Expect = 7e-05
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 6 GSALDNESEKLVQAAL-ESACKGRTVLMIAHRLSTVQNA-DLIVVLQAGQ 53
S LD S + + L E A +GRTV+++ H + A D ++VL+ G+
Sbjct: 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 38.3 bits (89), Expect = 9e-05
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 7 SALDNESEK-LVQAALESACKGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMG 58
+ LD + E ++Q L++ +TV +I H + V + AD ++V+ G+I++ G
Sbjct: 205 AGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 37.4 bits (88), Expect = 2e-04
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 7 SALDNES-----EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQ 53
SA+D E + L +T +++ H+L + +AD IVVL G+
Sbjct: 156 SAVDAHVGRHIFENCILGLLL---NNKTRILVTHQLQLLPHADQIVVLDNGR 204
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 36.9 bits (86), Expect = 3e-04
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLM 74
G +L I H L V+ AD + V+Q G+IVE G ++L A H +T
Sbjct: 208 GMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRK 256
Score = 30.7 bits (70), Expect = 0.053
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63
SALD + V L + G + L I+H L+ V+ ++V++ G+IVE G +++
Sbjct: 455 SALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAV 514
Query: 64 LAKKGHYWT 72
A H +T
Sbjct: 515 FANPQHEYT 523
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 36.5 bits (84), Expect = 4e-04
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 7 SALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
S LD +S V ++ KG+T++ I H L + +AD I+V+ G+IV G +++L+
Sbjct: 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 35.9 bits (84), Expect = 5e-04
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 12 ESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
E+E+L + E +G TVL++ H + V + AD + VL G+++ G
Sbjct: 178 ETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 35.3 bits (82), Expect = 0.001
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 7 SALDNESEKLVQAALESACKGR--TVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
SALD + + L K R T L I+H L+ V++ D I V+ GQIVE+G
Sbjct: 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 34.3 bits (80), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 7 SAL-DNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 55
+AL E E+L + +G V+ I+HRL V AD + VL+ G++V
Sbjct: 111 AALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 34.5 bits (80), Expect = 0.002
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 26 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGN 59
G T L I+H LS V+ +D I V+ G+IVE+G
Sbjct: 159 LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 34.2 bits (79), Expect = 0.002
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 26 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69
+ T+LM+ H AD +V L G+I G+ + LL+ K
Sbjct: 179 RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 34.5 bits (80), Expect = 0.002
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 55
G T+L+I H + V AD IVVL G+++
Sbjct: 200 GVTILLIEHDMKLVMGLADRIVVLNYGEVI 229
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 34.1 bits (79), Expect = 0.003
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63
SALD E+ + + A L + G T+++I H + V+ D + V++ G++VE G + +
Sbjct: 169 SALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
Query: 64 LAK 66
A
Sbjct: 229 FAN 231
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 33.6 bits (77), Expect = 0.004
Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 26 KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSLLAKK 67
+ +T+++++H ++ V + AD ++V++ G IV + K L K
Sbjct: 195 ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 33.3 bits (77), Expect = 0.005
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 7 SALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
SALD E V ++ + G T++++ H + + AD ++ + G+I+E G +
Sbjct: 165 SALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224
Query: 65 AKKGH 69
Sbjct: 225 DNPKS 229
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 33.0 bits (76), Expect = 0.006
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 7 SALDNESEKLV-QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
S LD + +L+ E A G+TV++ H++ V+ D +++L G+ V G
Sbjct: 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 32.9 bits (76), Expect = 0.006
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
SALD S ++ + K T++++ H + AD L G++VE G
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFG 222
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 33.0 bits (76), Expect = 0.007
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSL 63
S LD ES + + L K G T+L+ H L + D +++L G+I+ G + L
Sbjct: 165 SGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224
Query: 64 LAK 66
K
Sbjct: 225 KEK 227
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 32.8 bits (75), Expect = 0.008
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 31 LMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
L I H LS V + AD + V+Q G+ VE +L + H +T
Sbjct: 211 LFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYT 253
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 32.5 bits (74), Expect = 0.010
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 29 TVLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
T+L+I+H L + Q AD I VL GQ VE K L+ H +T
Sbjct: 211 TILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYT 255
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 32.0 bits (73), Expect = 0.013
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 7 SALDNESEKLVQAALES-ACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
SALD E V + A + RT++++ H +S ++ AD + + G+IVE G K+L
Sbjct: 173 SALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
Query: 65 AKKGH 69
A
Sbjct: 233 ADPQQ 237
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 32.2 bits (74), Expect = 0.014
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
SALD E+ + + L+ + G T+++I H + V+ D + VL G++VE G
Sbjct: 170 SALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEG 224
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 32.0 bits (73), Expect = 0.016
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKG 68
GR V+ +H + V+ D ++VL G++V G+ ++L A+
Sbjct: 183 GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 32.1 bits (74), Expect = 0.016
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 27 GRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMG 58
G T+++I H + V + D + V+ AG++VE G
Sbjct: 191 GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 31.7 bits (72), Expect = 0.019
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 7 SALDNESEKLVQAALES--ACKGRTVLMIAHRL-STVQNADLIVVLQAGQIVEMGNHKSL 63
SALD +Q L+ A +T++ I H L ++ D IV+++AG+IV++G +
Sbjct: 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217
Query: 64 L 64
L
Sbjct: 218 L 218
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 31.5 bits (72), Expect = 0.021
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63
+ LD + + + L+ + G+T++++ H L V AD +VVL G+I+ G+ +
Sbjct: 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226
Query: 64 LAKK 67
Sbjct: 227 FNDA 230
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 31.4 bits (71), Expect = 0.022
Identities = 15/67 (22%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLS-TVQNADLIVVLQAGQIVEMGNHKSLLA 65
SALD + + ++ LE + T++++ H + ++ AD I + G+++E G + ++
Sbjct: 175 SALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234
Query: 66 KKGHYWT 72
+ + T
Sbjct: 235 RPKNKLT 241
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 31.4 bits (72), Expect = 0.026
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 26 KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMGN-------HKSLLAKKGH 69
K +T+++++H L + Q D + L+ GQI G+ ++ LA +
Sbjct: 196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDLADRLS 247
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 31.1 bits (71), Expect = 0.027
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG 58
KG TVL I H L AD ++V+ G+I+E G
Sbjct: 190 KGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 31.1 bits (71), Expect = 0.028
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN 42
SALD E+E + L+ TV+ + HR T+ N
Sbjct: 544 SALDEETEDRLYQLLKEELPDATVISVGHR-PTLWN 578
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 31.3 bits (72), Expect = 0.029
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 7 SALD-NESEKLVQAALESACKGRTVLMIAHRLSTV-QNADLIVVLQAGQIV 55
+AL E+E+L +G ++ I+HRL V + AD I VL+ G++V
Sbjct: 174 AALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
Score = 24.8 bits (55), Expect = 5.6
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 24 ACKGRTVLMIAHRLSTV-QNADLIVVLQAGQIV 55
A +G+ +LMI+ L + +D I+V++ G+IV
Sbjct: 448 AAEGKAILMISSELPELLGLSDRILVMREGRIV 480
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 31.0 bits (71), Expect = 0.040
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 12 ESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 55
E+++L + A +G+T++ I H+L V AD + VL+ G++V
Sbjct: 175 EADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 30.8 bits (70), Expect = 0.043
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSL 63
+ LD ++ V L + G +L+I H L V + AD + V+ G+IVE G K +
Sbjct: 154 TDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
Query: 64 LAKKGHYWT 72
H T
Sbjct: 214 FYNPKHETT 222
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 30.2 bits (69), Expect = 0.054
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 7 SALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQN-ADLIVVL 49
+ +D ++++ + L +G T+L++ H L V D +++L
Sbjct: 161 AGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 30.1 bits (69), Expect = 0.058
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 7 SALDNESEKLVQAAL-ESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQ 53
+ LD + + L + +G+T++++ H L + AD ++VL+ G+
Sbjct: 163 AGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 29.9 bits (68), Expect = 0.080
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 7 SALDNESEKLVQAAL-ESACKGRTVLMIAHRLSTV-QNADLIVVL 49
+ +D +K + L E +G+TVLM+ H L V D ++ L
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL 212
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 30.0 bits (68), Expect = 0.084
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
KG TV++I H L ++ AD I+ L G +V G
Sbjct: 881 KGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASG 919
>gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional.
Length = 180
Score = 29.7 bits (67), Expect = 0.098
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 9 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQA 51
++ + +KL +E K + V++ H LS + D ++VL+A
Sbjct: 48 MEIDFDKL-AYFIEEEFKEKNVVLDGH-LSHLLPVDYVIVLRA 88
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 29.7 bits (67), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 30 VLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
+++I H L+ V + A I+V+ AGQ+VE G + H +T
Sbjct: 207 LVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYT 250
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 29.7 bits (67), Expect = 0.11
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 27 GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
G T+++I H + AD I+V+ +G++V G K + +
Sbjct: 195 GITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 29.6 bits (67), Expect = 0.11
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKK 67
+ +T++ I H + AD ++V G+++ G K +L K
Sbjct: 192 RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 29.4 bits (67), Expect = 0.12
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 7 SALDNESEKLVQAALESACK-GRTVLMIAHRLST--VQNADLIVVLQAGQIVEMG 58
S LD+ S V + L GRT++ H+ S+ + D +++L G+++ G
Sbjct: 140 SGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 29.4 bits (67), Expect = 0.12
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 26 KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMG 58
+G+TV++++H S++ + D +VL+ G+I G
Sbjct: 191 QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 29.3 bits (66), Expect = 0.13
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 8 ALDNESEKLVQAALESAC-KGRTVLMIAHRLSTVQNADLIVVLQAGQIV 55
ALD+ S + V A L +G TV+++ H A+ ++ ++ G+IV
Sbjct: 174 ALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 29.4 bits (66), Expect = 0.14
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 9 LDNESEKLVQAALESACKGRTVLMI--AHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65
LD ++ KLV ALE A K + M+ +H +++ +D + L+ G+I E G ++A
Sbjct: 199 LDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
Query: 66 K 66
Sbjct: 259 V 259
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 29.1 bits (66), Expect = 0.15
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGN 59
KG TV++I H L ++ AD I+ L GQ+V G
Sbjct: 221 KGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGT 260
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 29.0 bits (66), Expect = 0.16
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVE 56
LD+++ K V L K G+T++M+ H + AD ++ L+ G+I E
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 29.1 bits (66), Expect = 0.17
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGNHKSLLAKKGHY 70
KG TV++I H L ++ AD I+ L G+IV G + + K Y
Sbjct: 874 KGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASY 924
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 28.8 bits (65), Expect = 0.18
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAK 66
G+T++ + H + AD I V+ AG+IV+ +LA
Sbjct: 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 28.9 bits (64), Expect = 0.19
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 29 TVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
TVL I H L ++D I+V++AG+I++ L A
Sbjct: 193 TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 28.9 bits (65), Expect = 0.19
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 7 SALDNESEKLV-QAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
S LD + +L+ A E +G T++ +HR+ V+ D +++L+ GQ V G + +
Sbjct: 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR 218
Query: 65 AKKG 68
G
Sbjct: 219 RSFG 222
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 28.1 bits (64), Expect = 0.28
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 7 SALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54
S LD ES + L K G+T+L+ +H L + D + +L G+I
Sbjct: 124 SGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 28.2 bits (64), Expect = 0.31
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQI 54
LD+E+ K V L K G T++++ H + AD I+ L+ G+I
Sbjct: 169 GNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 28.3 bits (64), Expect = 0.33
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 26 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
+G TVL+ +H LS +Q AD I ++ G+++E G
Sbjct: 175 QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 28.2 bits (63), Expect = 0.34
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 29 TVLMIAHRLSTVQNADLIVVLQAGQIVEMGN 59
T++ I H LS AD ++V+ G + + G
Sbjct: 195 TIISITHDLSEAMEADHVIVMNKGTVYKEGT 225
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 28.1 bits (64), Expect = 0.38
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
KG TV++I H L ++ AD I+ L G+IV G
Sbjct: 882 KGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATG 920
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 28.0 bits (62), Expect = 0.49
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 56
+G+T+++I+H + AD I+ L AG IV+
Sbjct: 520 QGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 27.5 bits (62), Expect = 0.50
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 26 KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMG 58
G T +M+ H L T AD I VL G+IV G
Sbjct: 186 LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 27.7 bits (62), Expect = 0.54
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 26 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKK 67
KG T +++ H + AD IVV+ G + G + + A
Sbjct: 195 KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 27.4 bits (61), Expect = 0.60
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 26 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63
G T++++ H + V N AD + VL+ G++V G K +
Sbjct: 194 SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 27.5 bits (61), Expect = 0.66
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 7 SALDNESEKLVQAALESAC--KGRTVLMIAHRLS-TVQNADLIVVLQAGQIVEMG 58
SALD + + A ++ C + RT+LM+ H LS A I V+ G+I +
Sbjct: 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 27.3 bits (61), Expect = 0.74
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 9 LDNESEKLVQAALESACKGRTVLMIAHRL 37
LD E+ + L +A GRTV++I H L
Sbjct: 502 LDAETADELLEDLLAALSGRTVVLITHHL 530
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 27.3 bits (61), Expect = 0.81
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 27 GRTVLMIAHRL-STVQNADLIVVLQAGQIVEMGNHKSLLA 65
G+T++ + H + + AD I +++ G+IV++G +L
Sbjct: 186 GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
>gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain.
Length = 296
Score = 27.0 bits (60), Expect = 0.83
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 17 VQAALESACKGRTVLMIAHRLSTVQN---ADLIVVLQAGQI 54
+ A + G V M++HR ++ ADL+V L AGQI
Sbjct: 218 LAAVKMAKDAGWGV-MVSHRSGETEDTFIADLVVGLNAGQI 257
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 27.3 bits (60), Expect = 0.84
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 28 RTVLMIAHRL-STVQNADLIVVLQAGQIVEMGNHKSLL 64
RT++ I+H L ++ D I ++Q G++V++G +L
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 26.9 bits (60), Expect = 0.85
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 7 SALDNESEKLVQAALES-ACKGRTVLMIAH--RLSTVQNADLIVVLQAGQIVEMGNHKSL 63
S LD ++ K++ + ++++I H RL D + V+Q G+I++ G+ L
Sbjct: 180 SGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD-AEL 238
Query: 64 ---LAKKGHYW 71
L KKG+ W
Sbjct: 239 AKELEKKGYDW 249
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 27.0 bits (60), Expect = 0.93
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 7 SALDNESEKLVQAALE--SACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63
+ALD+ + + LE A G +L ++H L V AD +VVL+ G++ G +
Sbjct: 160 AALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
Query: 64 LAKKGHYWTLMNQQ 77
A W Q
Sbjct: 220 WASPDLPWLAREDQ 233
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 27.1 bits (60), Expect = 0.94
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
G L I+H ++ V+ + + V+ GQIVE+G +++ H +T
Sbjct: 514 GIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYT 560
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 27.1 bits (60), Expect = 0.96
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 7 SALDNESEKLVQAALES-ACKGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMGN 59
++LDN+ + + L + G +V+ I H + ++ AD ++ + G+I+ G
Sbjct: 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGP 1790
Query: 60 HKSLLAKK 67
K + A K
Sbjct: 1791 PKDISASK 1798
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 26.8 bits (60), Expect = 1.0
Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 27 GRTVLMIAHRLS-TVQNADLIVVLQAGQIVEMGNHKSLLAK 66
+T++ I H L ++ D I +++ G++V++G + +L
Sbjct: 211 QKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
>gnl|CDD|151746 pfam11305, DUF3107, Protein of unknown function (DUF3107). Some
members in this family of proteins are annotated as
ATP-binding proteins however this cannot be confirmed.
Currently no function is known.
Length = 74
Score = 26.0 bits (58), Expect = 1.0
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 5 FGSALD-NESEKLVQAALESAC--------KGRTVLMIAHRLSTVQ 41
F SA E E LV AL KGR VL+ A L+ V+
Sbjct: 16 FESAQSPEEVEALVAEALADGSGVLSLTDDKGRRVLVPAAALAYVE 61
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 26.5 bits (59), Expect = 1.1
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 7 SALD-NESEKLVQAALESACKGRTVLMIAHRLS-TVQNADLIVVLQAGQIVEMG 58
SALD ++ A + A +G VL + H L+ Q AD IV+L G+++ G
Sbjct: 170 SALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASG 223
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 26.5 bits (58), Expect = 1.2
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 7 SALD-NESEKLVQAALESACKG--RTVLMIAHRLSTVQNADLIVVLQAG 52
SALD + S+ L+Q + + RT++++ H+L + +AD I+ ++ G
Sbjct: 169 SALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 26.8 bits (60), Expect = 1.2
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIV 55
G TV+M+ H L ++ AD + VL G+++
Sbjct: 196 GLTVIMVTHDLDSLLTIADRVAVLADGKVI 225
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 26.7 bits (59), Expect = 1.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMG 58
TV+ I H + AD ++VL G+++ G
Sbjct: 193 NNLTVISITHDIDEANMADQVLVLDDGKLLAQG 225
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 26.7 bits (59), Expect = 1.2
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 7 SALDNE-SEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKS 62
+ALD E + ++V E A G T +++ H + + A +V ++ G IVE G+
Sbjct: 170 AALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 26.4 bits (58), Expect = 1.5
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 26 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQQN 78
+G+T+ I+H LS V++ + L GQ+ E G+ K ++ + NQ +
Sbjct: 192 QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKYNQMS 245
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 26.2 bits (58), Expect = 1.5
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 5 FGSALDNES-EKLVQAALESACKGRTVLMIAHRLSTVQNADLIV 47
LD + L +A LE KG V++I H + AD ++
Sbjct: 108 IDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLI 151
>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid
dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze
the conversion of a wide variety of D-2-hydroxy acids to
their corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate/glycerate and related dehydrogenases of the
D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. While many members of this family are dimeric,
alanine DH is hexameric and phosphoglycerate DH is
tetrameric.
Length = 303
Score = 26.1 bits (58), Expect = 1.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 8 ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI 54
L E+ LV AA +A K L+ R V L+ L++G+I
Sbjct: 188 PLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEI 234
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 26.3 bits (58), Expect = 1.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56
G L I H L VQ+ + V+ GQIVE
Sbjct: 201 GTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 26.1 bits (58), Expect = 2.0
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 9 LDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
LD S + A + + + G +VL H + ++ D +VVL G+++ G L
Sbjct: 163 LDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222
Query: 67 KG 68
G
Sbjct: 223 TG 224
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 25.8 bits (56), Expect = 2.2
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65
SALD + + ++ + S TV+++ H L+ +D + G++VE G + L +
Sbjct: 192 SALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
Query: 66 KKGH 69
H
Sbjct: 252 SPKH 255
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 25.9 bits (58), Expect = 2.3
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLS-TVQNADLIVVLQAGQIVEMG 58
SALD + + ++ L+ + G T + + H + AD I V+ G+IV++G
Sbjct: 159 SALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 25.9 bits (57), Expect = 2.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 43 ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
+D ++V+ G++VE G+ +LA H T
Sbjct: 217 SDQVLVMHQGEVVERGSTADVLASPLHELT 246
>gnl|CDD|236311 PRK08609, PRK08609, hypothetical protein; Provisional.
Length = 570
Score = 25.7 bits (57), Expect = 2.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 11 NESEKLVQAALESACKGRTVLMIAH 35
++SE+ + LE+AC+ V +IAH
Sbjct: 441 SQSEEEIMKRLENACRNPYVRLIAH 465
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 25.6 bits (57), Expect = 2.5
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 26 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
KG TV+M+ H L+ AD +++L+ G+IV G + +L
Sbjct: 188 KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 25.8 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 27 GRTVLMIAH-RLSTVQNADLIVVLQAGQIVEMG 58
GRT++ + H ++ + AD IVVL AG++ ++G
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 25.8 bits (57), Expect = 2.7
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 7 SALDNES-EKLVQAALESACKGRTVLMIAHRLST--VQNADLIVVLQAGQIVEMG 58
S LD+ +VQ A KG+T++ H+ S+ + D I+++ G++ +G
Sbjct: 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 25.6 bits (56), Expect = 3.0
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
G V+++ H L + A ++V+Q G++VE G +L H +T
Sbjct: 199 GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYT 245
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 25.5 bits (56), Expect = 3.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 27 GRTVLMIAHRLSTVQNADLIVVLQAGQIVEM 57
G+T+ I+H +AD ++ ++ GQ+ E+
Sbjct: 499 GKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 25.4 bits (56), Expect = 3.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 20 ALESACKGRTVLMIAHRLSTVQN---ADLIVVLQAGQI 54
A+E A K +I+HR ++ ADL V AGQI
Sbjct: 349 AIELAKKAGYTAVISHRSGETEDTTIADLAVATNAGQI 386
>gnl|CDD|221732 pfam12719, Cnd3, Nuclear condensing complex subunits, C-term
domain. The Cnd1-3 proteins are the three non-SMC
(structural maintenance of chromosomes) proteins that go
to make up the mitotic condensation complex along with
the two SMC protein families, XCAP-C and XCAP-E, (or in
the case of fission yeast, Cut3 and Cut14). The
five-member complex seems to be conserved from yeasts to
vertebrates. This domain is the C-terminal,
cysteine-rich domain of Cnd3. The complex shuttles
between the nucleus, during mitosis, and the cytoplasm
during the rest of the cycle. Thus this family is made
up of the C-termini of XCAP-Gs, Ycg1 and Ycs5 members.
Length = 302
Score = 25.3 bits (56), Expect = 3.3
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 3 RLFGSALDNESEKLVQAALESACKGRTVLMIAHRLS 38
++ LD+E ++ A E CK L++A RL+
Sbjct: 120 KILYKFLDSEDPEVQAIAAEGLCK----LLLAGRLT 151
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 25.3 bits (55), Expect = 3.6
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
+ L +L+QAA + A G+T+ +AH ++ NA + A +E
Sbjct: 433 AHLKKTQGELIQAA-KLAVVGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATS 491
Query: 67 KGHYWTLMNQ 76
L +
Sbjct: 492 LDKIENLTER 501
>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related
dehydrogenases [Amino acid transport and metabolism].
Length = 324
Score = 25.4 bits (56), Expect = 3.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 9 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI 54
L E+ L+ A + K +L+ A R V L+ L +G+I
Sbjct: 207 LTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252
>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed.
Length = 335
Score = 25.0 bits (56), Expect = 4.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 8 ALDNESEKLVQAALESACKGRTVLMI 33
LD E E+ +AALE A G V +I
Sbjct: 283 LLDEEEEREKRAALELAALGGPVFLI 308
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 25.0 bits (55), Expect = 4.6
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63
SALD +++ ++ L+ K G TVL + H AD + ++ G+++++G + +
Sbjct: 158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217
Query: 64 LAK 66
K
Sbjct: 218 FKK 220
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 24.7 bits (55), Expect = 4.7
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 26 KGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65
+G T+L++ AD VL+ G++V G LLA
Sbjct: 181 EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
>gnl|CDD|237844 PRK14873, PRK14873, primosome assembly protein PriA; Provisional.
Length = 665
Score = 24.9 bits (55), Expect = 4.8
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 10/48 (20%)
Query: 16 LVQAALESACKGRTVLMIA----------HRLSTVQNADLIVVLQAGQ 53
L AA + GR L++ L + A + VL AG
Sbjct: 177 LAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGL 224
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 25.0 bits (55), Expect = 4.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 30 VLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGH 69
+L++ H + V AD + V+ G+IVE G+ ++L H
Sbjct: 194 MLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKH 234
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 24.8 bits (54), Expect = 5.2
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 7 SALDNES-EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
+ LD + E L + +E A G +LM H L+ VVL G+++ G + L
Sbjct: 142 TGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 24.7 bits (55), Expect = 5.3
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLS-TVQNADLIVVLQA--GQIVE 56
SALD + + +Q L + G+TVL++ H + V AD +VVL A G+IV
Sbjct: 160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 24.9 bits (55), Expect = 5.5
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKK 67
G+T+ I+H +AD ++ ++ GQ+ E+ + A +
Sbjct: 499 MGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASR 540
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 24.8 bits (54), Expect = 5.6
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 9 LDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKG 68
LD + ++++ L+ A TV++ HR+ + +V++ ++ + + + LL +K
Sbjct: 169 LDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKS 228
Query: 69 HY 70
H+
Sbjct: 229 HF 230
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 24.8 bits (54), Expect = 5.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 43 ADLIVVLQAGQIVEMGNHKSLLAKKGH 69
+D ++V+ G++VE G+ +LA H
Sbjct: 217 SDQVLVMHEGEVVERGSTADVLASPLH 243
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 24.7 bits (55), Expect = 6.2
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 7 SALD-NESEKLVQAALESACK-GRTVLMIAHRLS-TVQNADLIVVLQAGQIVEMG 58
SALD +++ A + A + G V+++ H L+ + AD IV+L G++V G
Sbjct: 169 SALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADG 223
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 24.6 bits (54), Expect = 6.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56
G L I H L V+ ++V+ GQIVE
Sbjct: 202 GTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 24.5 bits (53), Expect = 6.6
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 9 LDNESEKLVQAALESACKGRTVLMIAH-RLSTVQNADLIVVLQAGQIVEMGNHKSLLAKK 67
LD E+ +++ K T++++ H + +D + L GQIVE G + +
Sbjct: 177 LDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236
Query: 68 GHYWT 72
H T
Sbjct: 237 RHELT 241
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 24.4 bits (53), Expect = 6.8
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLS-TVQNADLIVVLQAGQIVEMG 58
SALD + +Q L++ + G T + + H + +D I +++ G+I ++G
Sbjct: 129 SALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIG 183
>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid
dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze
the conversion of a wide variety of D-2-hydroxy acids to
their corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate/glycerate and related dehydrogenases of the
D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomains but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. While many members of this family are dimeric,
alanine DH is hexameric and phosphoglycerate DH is
tetrameric. Formate dehydrogenase (FDH) catalyzes the
NAD+-dependent oxidation of formate ion to carbon
dioxide with the concomitant reduction of NAD+ to NADH.
FDHs of this family contain no metal ions or prosthetic
groups. Catalysis occurs though direct transfer of the
hydride ion to NAD+ without the stages of acid-base
catalysis typically found in related dehydrogenases.
FDHs are found in all methylotrophic microorganisms in
energy production and in the stress responses of plants.
Length = 313
Score = 24.4 bits (54), Expect = 6.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 12 ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQI 54
E+ L A +A K VL+ R S V LI L++G+I
Sbjct: 202 ETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRI 244
>gnl|CDD|215095 PLN00191, PLN00191, enolase.
Length = 457
Score = 24.3 bits (53), Expect = 8.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 17 VQAALESACKGRTVLMIAHRLSTVQN---ADLIVVLQAGQI 54
++A S G V M +HR ++ ADL V L GQI
Sbjct: 378 IEAVKMSKAAGWGV-MTSHRSGETEDSFIADLAVGLATGQI 417
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 24.2 bits (53), Expect = 8.3
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
G TV++I H L + +AD I+ G++V G
Sbjct: 138 LGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 24.3 bits (53), Expect = 8.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 27 GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
TV+ I H L V +D ++V++ GQ+ + L ++
Sbjct: 191 QMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.130 0.370
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,670,989
Number of extensions: 270005
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 170
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)