RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10474
(79 letters)
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 129 bits (326), Expect = 2e-39
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++ + CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 174 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233
Query: 67 -KGHYWTLMNQQN 78
+ Y L Q+
Sbjct: 234 PESLYSYLYQLQS 246
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 135 bits (343), Expect = 3e-39
Identities = 43/71 (60%), Positives = 59/71 (83%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESEK+VQ AL+ A +GRT ++IAHRLST+QNADLIVV+Q G++ E G H+ LLA+
Sbjct: 1200 SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Query: 67 KGHYWTLMNQQ 77
KG Y+++++ Q
Sbjct: 1260 KGIYFSMVSVQ 1270
Score = 126 bits (318), Expect = 6e-36
Identities = 41/72 (56%), Positives = 52/72 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE +VQAAL+ A +GRT ++IAHRLSTV+NAD+I G IVE GNH L+ +
Sbjct: 555 SALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614
Query: 67 KGHYWTLMNQQN 78
KG Y+ L+ Q
Sbjct: 615 KGIYFKLVMTQT 626
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 129 bits (326), Expect = 3e-39
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
SALD ++ VQ L + + RTVL+I +LS + A I+ L+ G + E G H L+
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244
Query: 65 AKKGHYWTLMNQQ 77
+ G Y +++
Sbjct: 245 ERGGCYRSMVEAL 257
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 127 bits (322), Expect = 6e-39
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
++LD+ESE +VQ AL+S KGRT L+IAHRLST+ +AD I ++ GQI G H L+A
Sbjct: 168 ASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227
Query: 67 KGHYWTLMNQQ 77
Y +++Q
Sbjct: 228 HPLYAKYVSEQ 238
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 127 bits (321), Expect = 1e-38
Identities = 34/72 (47%), Positives = 50/72 (69%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
S+LD+++E L Q A+E K RT+++IAHRLST+ +A+ I++L G+IVE G HK LL
Sbjct: 184 SSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
Query: 67 KGHYWTLMNQQN 78
G Y + N Q+
Sbjct: 244 NGEYAEMWNMQS 255
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 127 bits (321), Expect = 2e-36
Identities = 38/71 (53%), Positives = 50/71 (70%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE+ +QAAL+ K +TVL+IAHRLST++ AD I+V+ G+I+E G H LLA+
Sbjct: 509 SALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568
Query: 67 KGHYWTLMNQQ 77
G Y L Q
Sbjct: 569 DGAYAQLHRIQ 579
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 126 bits (320), Expect = 2e-36
Identities = 40/71 (56%), Positives = 49/71 (69%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE+ +QAAL+ K RT L+IAHRLST++ AD IVV++ G IVE G H LLA+
Sbjct: 509 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 568
Query: 67 KGHYWTLMNQQ 77
G Y L Q
Sbjct: 569 HGVYAQLHKMQ 579
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 126 bits (320), Expect = 3e-36
Identities = 41/72 (56%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD E+E LVQ AL+ GRTVL+IAHRLST++NA+++ VL G+I E G H+ LL+K
Sbjct: 512 SALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSK 571
Query: 67 -KGHYWTLMNQQ 77
G Y LMN+Q
Sbjct: 572 PNGIYRKLMNKQ 583
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 120 bits (303), Expect = 2e-35
Identities = 34/71 (47%), Positives = 49/71 (69%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD +E+ +QA+L C RT +++AHRLSTV NAD I+V++ G IVE G H++LL++
Sbjct: 219 SALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278
Query: 67 KGHYWTLMNQQ 77
G Y + Q
Sbjct: 279 GGVYADMWQLQ 289
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 124 bits (313), Expect = 2e-35
Identities = 38/71 (53%), Positives = 51/71 (71%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++Q AL+ K RT L++AHRLST+ +AD IVV++ G IVE G H+ L+AK
Sbjct: 506 SALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565
Query: 67 KGHYWTLMNQQ 77
+G Y L + Q
Sbjct: 566 QGAYEHLYSIQ 576
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 109 bits (275), Expect = 5e-30
Identities = 35/71 (49%), Positives = 53/71 (74%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
S +D ++EK +QAA+ +G+T ++IAHRL+T++NADLI+VL+ G+IVEMG H L+ K
Sbjct: 520 SNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579
Query: 67 KGHYWTLMNQQ 77
+G Y+ L Q
Sbjct: 580 RGFYYELFTSQ 590
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 76.8 bits (190), Expect = 1e-18
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
S++D +EK + L+ KG T +I ++ T AD I+VL G++ G HK LL
Sbjct: 508 SSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 69.4 bits (170), Expect = 6e-16
Identities = 11/73 (15%), Positives = 31/73 (42%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
+ LD + ++++ L+ A TV++ R+ + D +V++ ++ + + L
Sbjct: 184 AHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243
Query: 67 KGHYWTLMNQQNP 79
+ +P
Sbjct: 244 PADRFVAGFIGSP 256
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 52.9 bits (128), Expect = 3e-10
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTLMNQ 76
K +T +++ H +S + D+I+V+ G+I EMG+++ LLA+ G + +
Sbjct: 178 KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRT 228
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 52.0 bits (125), Expect = 7e-10
Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 7 SALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
LD +EK + ++ + +T +++ ++ ++ AD I++L G G L
Sbjct: 188 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247
Query: 66 KKGHYWTLMNQQN 78
+ + + + +
Sbjct: 248 LRPDFSSKLMGCD 260
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 51.8 bits (125), Expect = 8e-10
Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 7 SALDNESEK-LVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
LD +EK + ++ + +T +++ ++ ++ AD I++L G G L
Sbjct: 159 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218
Query: 66 KKGHYWTLM 74
+ + + +
Sbjct: 219 LQPDFSSKL 227
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 42.7 bits (101), Expect = 2e-06
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLA 65
S LD + A+ K + V+++ H L + DLI ++ V KS A
Sbjct: 167 SYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
Query: 66 KKG 68
+ G
Sbjct: 227 RVG 229
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 36.9 bits (86), Expect = 2e-04
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 7 SALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56
S LD + + S + V+ + H LS + +D + ++ V
Sbjct: 250 SYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 35.7 bits (83), Expect = 5e-04
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 7 SALDNESEKLVQAALES-ACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVE 56
S LD V + A +G+ VL++ H L+ + +D+I V+ V
Sbjct: 257 SYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 33.8 bits (78), Expect = 0.002
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63
SALD + + + L+ + G T+L+I H + V+ D + V+ G+++E +
Sbjct: 192 SALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
Query: 64 LAKKGH 69
+
Sbjct: 252 FSHPKT 257
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 32.6 bits (75), Expect = 0.005
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 26 KGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSLLAK 66
G+TV++I+H + TV + D +VVL+ G+ V G L K
Sbjct: 187 LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 32.6 bits (75), Expect = 0.006
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 7 SALDNESEKLVQAALES-ACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
S LD A+ + +G++VL++ H L+ + +D+I V+ G+ G
Sbjct: 187 SYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYG 239
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 31.0 bits (71), Expect = 0.022
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMG----- 58
+ LD + L K G T+++ H + V D + V++ G+++ G
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 59 -NHKSLLAKKG 68
K ++ K
Sbjct: 232 FAEKEVIRKVN 242
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 31.0 bits (71), Expect = 0.023
Identities = 9/36 (25%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 24 ACKGRTVLMIAHRLS-TVQNADLIVVLQAGQIVEMG 58
+ +G ++M +H L+ T+++A +L+ G+++ G
Sbjct: 180 SQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 28.7 bits (65), Expect = 0.13
Identities = 11/51 (21%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 8 ALDNESEKLVQAALES--ACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 56
ALD+++ + + L+ G+TV+++ H ++ + + I+ L+ G++
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 27.5 bits (62), Expect = 0.31
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 11 NESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54
+ + LE KG T L+I HRL V N D + V+ GQI
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 27.0 bits (60), Expect = 0.47
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 14 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIV 47
KL+ K V++++H AD ++
Sbjct: 100 RKLITIMERYLKKIPQVILVSHDEELKDAADHVI 133
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 26.7 bits (60), Expect = 0.67
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 56
G +++M+ H + + ++ G++V
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 26.3 bits (59), Expect = 0.87
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
G TV+ + H++ V +D ++ + G++V G
Sbjct: 782 AGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQG 820
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 26.3 bits (59), Expect = 0.92
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
+G TV++I H L ++NAD I+ L + G IV G
Sbjct: 857 RGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATG 895
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM;
1.90A {Hordeum vulgare} SCOP: a.93.1.1
Length = 309
Score = 26.4 bits (59), Expect = 0.95
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 19 AALESACKGRTV 30
LE C+G V
Sbjct: 93 DRLERECRGAVV 104
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 26.2 bits (57), Expect = 1.2
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 7 SALDNE-SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 49
LD E KL+ K V++++H AD ++ +
Sbjct: 283 PYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 25.6 bits (57), Expect = 1.9
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
G TVL+I H L ++ AD I+ L + GQIV +G
Sbjct: 897 NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 25.6 bits (57), Expect = 2.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
KG TV++I H L ++ +D I+ L G +V G
Sbjct: 915 KGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQG 953
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 25.6 bits (57), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
M++HR + + ADL+V L GQI
Sbjct: 367 MVSHRSGETEDTFI--ADLVVGLCTGQI 392
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 25.2 bits (56), Expect = 2.1
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
M++HR + + ADL+V L+ GQI
Sbjct: 370 MVSHRSGETEDTFI--ADLVVGLRTGQI 395
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 25.2 bits (56), Expect = 2.3
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
++HR S + ADL+V L+ GQI
Sbjct: 380 QVSHRSGETEDSFI--ADLVVGLRCGQI 405
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 25.2 bits (56), Expect = 2.3
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
M +HR + + ADL+V L QI
Sbjct: 377 MASHRSGETEDTFI--ADLVVGLNCKQI 402
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 25.2 bits (56), Expect = 2.3
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
M++HR + + ADL+V L +GQI
Sbjct: 371 MVSHRSGETEDTYI--ADLVVALGSGQI 396
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 25.2 bits (56), Expect = 2.7
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 26 KGRTVLMIAHRLSTVQNADLIVVL------QAGQIVEMG 58
G TVL+I H L ++ AD I+ L + GQIV +G
Sbjct: 595 NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 25.2 bits (56), Expect = 2.9
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
+++HR +T+ ADL V L +GQI
Sbjct: 364 VVSHRSGETEDTTI--ADLSVALNSGQI 389
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 24.8 bits (55), Expect = 2.9
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 7 SALDNESEKLVQAAL----ESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMG 58
SALD E LV L + A +G+T++++ H + ++ + ++ L G+I E G
Sbjct: 182 SALDPE---LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 24.8 bits (55), Expect = 3.1
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQI 54
SALD ++ +V + L + TV+ H+ + V A+ ++L
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 24.9 bits (54), Expect = 3.6
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 8 ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNA 43
+ + + L++A ++ G I RL V A
Sbjct: 268 TFNPKYDTLLKAVKDATNTGIKCAGIDVRLCDVGEA 303
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology,
structural genomics, midwest center for S genomics,
transferase; 1.90A {Helicobacter pylori}
Length = 148
Score = 24.6 bits (54), Expect = 3.8
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 14 EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVV 48
+ + A VL +AH L V +
Sbjct: 59 KTWFEKWHHKAKDLGVVLKMAHSLGDVLIGQSSFL 93
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex,
double helix, transcription-DNA complex; HET: DNA;
2.50A {Homo sapiens} PDB: 1d5v_A
Length = 102
Score = 24.1 bits (53), Expect = 4.4
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 67 KGHYWTL 73
KG YW L
Sbjct: 73 KGSYWAL 79
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO
structural genomics, PSI, protein structure initiative,
secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1
c.65.1.1
Length = 260
Score = 24.2 bits (53), Expect = 4.7
Identities = 4/27 (14%), Positives = 8/27 (29%), Gaps = 4/27 (14%)
Query: 42 NADLIVVLQAGQIVEMGNHKSLLAKKG 68
N + I+ I+ K +
Sbjct: 77 NPEYILFPHWSWIIP----KEIFENFT 99
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 23.8 bits (52), Expect = 6.8
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 12/42 (28%)
Query: 1 MFRLFGSALDNESEKLV------------QAALESACKGRTV 30
+ L AL + V +AA+ SA G
Sbjct: 302 YYMLIRDALKGQIANPVPPVEALAVMAVLEAAVRSAESGMVQ 343
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 23.9 bits (52), Expect = 7.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 15 KLVQAALESACKGRTV 30
KL++A E+A RTV
Sbjct: 333 KLIEAIFEAAETNRTV 348
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
oxidoreductase YVAA, oxidoredu PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 23.8 bits (52), Expect = 7.2
Identities = 6/16 (37%), Positives = 14/16 (87%)
Query: 15 KLVQAALESACKGRTV 30
++++AA+ES+ + RT+
Sbjct: 331 RIIEAAMESSKEKRTI 346
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate
mutase family member 5, BXLBV68, MGC protein, structural
genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo
sapiens} PDB: 3o0t_A
Length = 202
Score = 23.6 bits (51), Expect = 8.0
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 2 FRLFGSALDNESEKLVQAALESACKGRTVLMIAH 35
+ G+ ++ + A + + I H
Sbjct: 110 YYEDGARIEAAFRNYIHRADARQEEDSYEIFICH 143
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 23.6 bits (52), Expect = 8.0
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
+I+HR +T+ ADL V AGQI
Sbjct: 366 VISHRSGETEDATI--ADLAVGTAAGQI 391
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 23.7 bits (52), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
+++HR +T+ ADL V L GQI
Sbjct: 388 VVSHRSGETEDTTI--ADLAVALNTGQI 413
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 23.6 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
+I+HR +T+ ADL V A QI
Sbjct: 362 IISHRSGETEDTTI--ADLAVATDARQI 387
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 23.6 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
+++HR ST+ AD+ V AGQI
Sbjct: 378 VVSHRSGETEDSTI--ADIAVATNAGQI 403
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 23.6 bits (52), Expect = 8.6
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 7/28 (25%)
Query: 32 MIAHRL-----STVQNADLIVVLQAGQI 54
+++HR + + AD V L GQI
Sbjct: 360 VMSHRSGESEDAFI--ADFAVALNTGQI 385
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 23.4 bits (51), Expect = 8.8
Identities = 2/16 (12%), Positives = 9/16 (56%)
Query: 15 KLVQAALESACKGRTV 30
+L++ + S + + +
Sbjct: 331 ELIELGIASDQQKKAL 346
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.130 0.370
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,083,208
Number of extensions: 50453
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 65
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)