RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10474
(79 letters)
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 94.9 bits (236), Expect = 1e-26
Identities = 40/71 (56%), Positives = 49/71 (69%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE+ +QAAL+ K RT L+IAHRLST++ AD IVV++ G IVE G H LLA+
Sbjct: 181 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240
Query: 67 KGHYWTLMNQQ 77
G Y L Q
Sbjct: 241 HGVYAQLHKMQ 251
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 90.6 bits (225), Expect = 8e-25
Identities = 39/72 (54%), Positives = 52/72 (72%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++Q AL+ K RT L++AHRLST+ +AD IVV++ G IVE G H+ L+AK
Sbjct: 183 SALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 242
Query: 67 KGHYWTLMNQQN 78
+G Y L + QN
Sbjct: 243 QGAYEHLYSIQN 254
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 89.6 bits (222), Expect = 2e-24
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
SALD ESE ++ + CKGRTV++IAHRLSTV+NAD I+V++ G+IVE G HK LL++
Sbjct: 168 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227
Query: 67 KGH-YWTLMNQQN 78
Y L Q+
Sbjct: 228 PESLYSYLYQLQS 240
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 84.9 bits (210), Expect = 1e-22
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAK 66
++LD+ESE +VQ AL+S KGRT L+IAHRLST+ +AD I ++ GQI G H L+A
Sbjct: 168 ASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227
Query: 67 KGHYWTLMNQQ 77
Y +++Q
Sbjct: 228 HPLYAKYVSEQ 238
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 85.0 bits (210), Expect = 1e-22
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLL 64
SALD S+ V+ L + + R+VL+I LS V+ AD I+ L+ G I E G H+ L+
Sbjct: 180 SALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLM 239
Query: 65 AKKGHYWTLMN 75
KKG YW ++
Sbjct: 240 EKKGCYWAMVQ 250
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 75.7 bits (186), Expect = 5e-19
Identities = 11/73 (15%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 7 SALDNES-EKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLA 65
LD + E++ ++ + +T +++ ++ ++ AD I++L G G L +
Sbjct: 187 GYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 246
Query: 66 KKGHYWTLMNQQN 78
+ + + + +
Sbjct: 247 LRPDFSSKLMGYD 259
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 47.6 bits (113), Expect = 9e-09
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 7 SALDNESEKLVQAALES-ACKGRTVLMIAHRLSTV-QNADLIVVLQAGQIVEMGNHKSLL 64
++LD + + L + +G ++M +H L+ ++A +L+ G+++ G + +L
Sbjct: 161 NSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 220
Query: 65 AK 66
Sbjct: 221 TP 222
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 45.6 bits (108), Expect = 5e-08
Identities = 11/57 (19%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNHK 61
ALD+++ + + L+ + G+TV+++ H ++ + + I+ L+ G++ +
Sbjct: 174 GALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 41.4 bits (97), Expect = 1e-06
Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 7 SALD-NESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
SALD ++++ + A +G+T++++ H + ++ + ++ L G+I E G+ + +
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
Query: 65 AKKGHYWT 72
Sbjct: 238 GNPQSPRL 245
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 38.0 bits (88), Expect = 3e-05
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 7 SALD-NESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
+ + + + LE KG T L+I HRL V N D + V+ GQI+ G + +
Sbjct: 179 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 238
Query: 65 AK 66
Sbjct: 239 KN 240
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 36.9 bits (85), Expect = 7e-05
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 25 CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHY 70
+L + H L AD + V+ G+IVE G K L + K
Sbjct: 175 EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 36.8 bits (85), Expect = 7e-05
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 27 GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
G T+L+I H + V+ D + V+ G+++E + +
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 237
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 36.1 bits (82), Expect = 1e-04
Identities = 4/36 (11%), Positives = 8/36 (22%)
Query: 25 CKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNH 60
V+ I L ++E+
Sbjct: 128 DPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 35.9 bits (81), Expect = 1e-04
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 7 SALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL 49
LD E + + +E K V++++H AD ++ +
Sbjct: 236 PYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 279
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 35.7 bits (82), Expect = 2e-04
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 25 CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
G T + + H D I V+ G + ++G+ + K + +
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 34.9 bits (80), Expect = 3e-04
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 7 SALD-NESEKLVQAALESACKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
L ++ + + +G T+L++ A VL+ GQIV G LL
Sbjct: 168 LGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
Query: 65 A 65
Sbjct: 228 D 228
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 34.8 bits (78), Expect = 4e-04
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 7 SALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQNADLIVVL 49
LD E + + +E K V++++H AD ++ +
Sbjct: 313 PYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 356
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 34.7 bits (79), Expect = 4e-04
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 25 CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
G T+L+++H + + AD + VL G++V++G + L
Sbjct: 189 RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 34.4 bits (79), Expect = 5e-04
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 7 SALDNESEKLVQAALESACK--GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSL 63
S LD + ++A ++ + T + + H D I V+ GQ++++G+ +
Sbjct: 165 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
Query: 64 LAKKGHYWT 72
+ +
Sbjct: 225 YLRPNSVFV 233
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 33.9 bits (77), Expect = 8e-04
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 25 CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
TVL I H + + AD I V+ G+++++G + + K
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 33.0 bits (75), Expect = 0.001
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 25 CKGRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLLAKKGHYWT 72
GRT++ + H AD IVVL AG++ ++G L +
Sbjct: 179 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 31.5 bits (71), Expect = 0.005
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 7 SALDNESEKLVQAALESACK-GRTVLMIAHRLSTVQN-ADLIVVLQAGQIVEMGNHKSLL 64
S LD + + V+ L+ A + G T+L+ +H + V+ D I ++ G IVE G + L
Sbjct: 162 SGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 221
Query: 65 AKKGH 69
+
Sbjct: 222 ERYKA 226
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 29.1 bits (65), Expect = 0.039
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 7 SALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVL 49
A+D +S+ V ++ K + +++I+ R + D+ L
Sbjct: 154 VAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENL 195
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 27.3 bits (59), Expect = 0.19
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 1 MFRLFGSALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVEMGNH 60
+ S LD+ + + + L+ K ++I H ++ ADL+ V M N
Sbjct: 246 VLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLH------GVTMVNG 299
Query: 61 KS 62
S
Sbjct: 300 VS 301
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 24.7 bits (52), Expect = 1.6
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 7 SALDNE-SEKLVQAALESACKGRTVLMIAHRLSTVQNADLIV 47
+ALD +++ ++I+ + + + +D +V
Sbjct: 365 AALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALV 406
>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus
thermophilus [TaxId: 274]}
Length = 230
Score = 23.4 bits (50), Expect = 3.4
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 17 VQAALESACKGRTVLMIAHRLSTVQN 42
+ A A KG V ++ L V
Sbjct: 15 AETAFWLAQKGVRVGLLTQSLDAVMM 40
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 23.0 bits (49), Expect = 4.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 18 QAALESACKGRTVLMIAHRLSTVQN---ADLIVVLQAGQI 54
A + A + +M++HR ++ ADL+V L GQI
Sbjct: 214 IQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQI 253
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 23.1 bits (49), Expect = 4.8
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 32 MIAHRLSTVQN---ADLIVVLQAGQI 54
M++HR ++ ADL+V L +GQI
Sbjct: 230 MVSHRSGETEDTYIADLVVALGSGQI 255
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 23.0 bits (48), Expect = 5.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 8 ALDNESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIV 47
LD+ + K V ++ + K ++I R + NAD I+
Sbjct: 258 HLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKII 297
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 22.8 bits (48), Expect = 6.4
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 6 GSALDN-ESEKLVQAALESACKGRTVLMIAHRLSTVQNADLIVVLQAGQIVE 56
+A D + +L A+E +G+ + + + + + D+ L ++
Sbjct: 256 PTAFDRVLASRLGARAVELLLEGKGGRCVGIQNNQLVDHDIAEALANKHTID 307
>d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin)
{Milky ribbon-worm (Cerebratulus lacteus) [TaxId:
6221]}
Length = 110
Score = 21.9 bits (46), Expect = 9.9
Identities = 5/42 (11%), Positives = 8/42 (19%)
Query: 32 MIAHRLSTVQNADLIVVLQAGQIVEMGNHKSLLAKKGHYWTL 73
TV + + A HK +
Sbjct: 42 YKTQAGKTVDYINAAIGGSADAAGLASRHKGRNVGSAEFHNA 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.130 0.370
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 250,893
Number of extensions: 8327
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 33
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)