BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10478
(451 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 140/282 (49%), Positives = 189/282 (67%), Gaps = 7/282 (2%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIAIDEAHC+S+WGHDFR +YR L L+ LP+VPI+A+TATA+P + +DI SL L
Sbjct: 603 ITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIREDITKSLNLH 662
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQ-----FEGSTIIYCPTKVICEK 246
+P + T FDRPNLYL + K +I DLR+ + Q FEG+TI+YCPT+ E+
Sbjct: 663 NPQVTCTSFDRPNLYLDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIVYCPTRKTSEQ 722
Query: 247 VCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHY 306
V L + GI YHA + +KQR+E+H F++D I VVAT AFGMGI+KPD+R VIHY
Sbjct: 723 VTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGINKPDIRKVIHY 782
Query: 307 GAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKR 366
GAPK++ +YYQEIGRAGRDGL S C+ + AD N + + + +E+ M+ +
Sbjct: 783 GAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHML-GEIPNKGFREYKLKMLTK 841
Query: 367 VEKYLELRTCRRKYLLNHFKGSSVTVAESQV-PPDKCCDNCR 407
+EKYL TCRRK +L+HF+ + A S + +KCCDNC+
Sbjct: 842 MEKYLNSSTCRRKIILSHFEDKQLRKASSGIMGTEKCCDNCK 883
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 12 IQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQV-PPDKCCDNCR 63
+E+ M+ ++EKYL TCRRK +L+HF+ + A S + +KCCDNC+
Sbjct: 831 FREYKLKMLTKMEKYLNSSTCRRKIILSHFEDKQLRKASSGIMGTEKCCDNCK 883
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 191/282 (67%), Gaps = 8/282 (2%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIA+DEAHC+S+WGHDFR S+R L L+ LP VP++A++ATA+ + +DI + L L+
Sbjct: 626 ITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDIISCLNLK 685
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLR----KLTNFENQFEGSTIIYCPTKVICEKV 247
DP I TGFDRPNLYL K +I+ DL+ + + +FEG TIIYCP++ + E+V
Sbjct: 686 DPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPSRKMTEQV 745
Query: 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307
L + + R YHA + + +RK++H F++D I+ VVAT AFGMGI+K D+R VIHYG
Sbjct: 746 TAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADIRKVIHYG 805
Query: 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF-TKNNMIFQPNLNDSEIQEHSKTMMKR 366
APK++ +YYQEIGRAGRDGL S C+ + ADF T N++ + ++D + + + MM +
Sbjct: 806 APKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIE--IHDEKFRLYKLKMMVK 863
Query: 367 VEKYLELRTCRRKYLLNHFKGSSVTVAESQV-PPDKCCDNCR 407
+EKYL CRR+ +L+HF+ + A + +KCCDNCR
Sbjct: 864 MEKYLHSSQCRRRIILSHFEDKCLQKASLDIMGTEKCCDNCR 905
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 7 LNDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQV-PPDKCCDNCR 63
++D + + + MM ++EKYL CRR+ +L+HF+ + A + +KCCDNCR
Sbjct: 848 IHDEKFRLYKLKMMVKMEKYLHSSQCRRRIILSHFEDKCLQKASLDIMGTEKCCDNCR 905
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/280 (48%), Positives = 183/280 (65%), Gaps = 5/280 (1%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIA+DEAHC+S+WGHDFR S+R L L+ LP VPI+A+TATA+ + +DI L LR
Sbjct: 662 ITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLR 721
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKL---TNFENQFEGSTIIYCPTKVICEKVC 248
+P I TGFDRPNLYL K +I+ DL+ T+ +FEG TIIYCP++ + ++V
Sbjct: 722 NPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSSHWEFEGPTIIYCPSRKMTQQVT 781
Query: 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA 308
L + + YHA +S RK+IH FV+D I+ V+AT AFGMGI+K D+R VIHYGA
Sbjct: 782 GELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKADIRQVIHYGA 841
Query: 309 PKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVE 368
PKD+ +YYQEIGRAGRDGL S C+ + AD N + + + + + + MM ++E
Sbjct: 842 PKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLL-TEIRNEKFRLYKLKMMAKME 900
Query: 369 KYLELRTCRRKYLLNHFKGSSVTVAESQV-PPDKCCDNCR 407
KYL CRR+ +L+HF+ V A + +KCCDNCR
Sbjct: 901 KYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCR 940
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 19 MMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQV-PPDKCCDNCR 63
MM ++EKYL CRR+ +L+HF+ V A + +KCCDNCR
Sbjct: 895 MMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCR 940
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/287 (45%), Positives = 175/287 (60%), Gaps = 16/287 (5%)
Query: 123 ILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVID 182
I+ L I LIAIDEAHC+S +G DFR +YR ++ + LP+VPILA+TATAT +V
Sbjct: 135 IVKLEDFQGISLIAIDEAHCISAYGFDFRTAYREITFFKEILPNVPILALTATATNIVAK 194
Query: 183 DICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTN-FENQFEGSTIIYCPTK 241
DIC L L+ I FDRPNLYL K + D+ + N + NQ S IIYC TK
Sbjct: 195 DICKVLQLKTNEPIKASFDRPNLYLEVRTKSKNPANDIVPIINKYPNQ---SVIIYCLTK 251
Query: 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVR 301
+K+ D+L+ + + YHA +S + + + H F+ + IK+VVAT AFGMGI+KPDVR
Sbjct: 252 KETQKIADILTVHKVVCGIYHAGLSNEHKTKTHTNFINNKIKIVVATIAFGMGINKPDVR 311
Query: 302 CVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSK 361
VIHYGAPK++ YYQEIGRAGRDG S CY FY DF N N+ Q+
Sbjct: 312 VVIHYGAPKNIEGYYQEIGRAGRDGEKSYCYAFYNFQDFMIQRRFISQN-NNPNYQKTQL 370
Query: 362 TMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKC--CDNC 406
++++++KY+ LRTCRRK LL +F + +KC CDNC
Sbjct: 371 ALLEQMKKYVTLRTCRRKILLEYFDEET---------KEKCDFCDNC 408
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 11/57 (19%)
Query: 8 NDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKC--CDNC 62
N+ Q+ ++++++KY+ LRTCRRK LL +F + +KC CDNC
Sbjct: 361 NNPNYQKTQLALLEQMKKYVTLRTCRRKILLEYFDEET---------KEKCDFCDNC 408
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 176/307 (57%), Gaps = 12/307 (3%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELR--LPLPDVPILAVTATATPVVIDDICTSLM 189
I L+AIDEAHCVSQWGHDFR SYR L+E+R L ++P++A+TATAT V DD+ +L
Sbjct: 342 ISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALTATATVRVRDDVIANLR 401
Query: 190 LRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFEN----QFEGSTIIYCPTKVICE 245
LR P I T FDR NLY++ +D + DL + F G TIIYC TK + +
Sbjct: 402 LRKPLITTTSFDRKNLYISVHSSKD-MAEDLGLFMKTDEVKGRHFGGPTIIYCQTKQMVD 460
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
V VL R G+++ YHA ++ QR++ H F++D I +VAT AFGMGIDKPDVR VIH
Sbjct: 461 DVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAFGMGIDKPDVRNVIH 520
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMK 365
YG P ++ +YYQEIGRAGRDG S+C F+ D + + E+ E+ M++
Sbjct: 521 YGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNSQQKEEVVENLTMMLR 580
Query: 366 RVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLELEQVPRGGRMVV 425
++E L CRR LL HF S Q CCD C EML Q + V
Sbjct: 581 QLELVLTTVGCRRYQLLKHFDPSYAKPPTMQA---DCCDRC--TEMLNGNQDSSSSIVDV 635
Query: 426 ENSEVWM 432
W+
Sbjct: 636 TTESKWL 642
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/278 (41%), Positives = 153/278 (55%), Gaps = 10/278 (3%)
Query: 134 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
LIAIDEAHC+S WGHDFRPSYR LS LR L DVP+LA+TATA P V D+ SL LR+P
Sbjct: 159 LIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNP 218
Query: 194 NIINTGFDRPNLYLAASVKQ--DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVL 251
++ + F+RPN++ K D+ DL L IIYC + C+ + L
Sbjct: 219 LVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKSCGNI--CAIIYCLERTTCDDLSVHL 276
Query: 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD 311
S GI + YHA ++ K R + ++ +++VAT AFGMGIDK DVR V H+ PK
Sbjct: 277 SSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKS 336
Query: 312 LSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTM-MKRVEKY 370
+ ++YQE GRAGRD L S +Y D K + + + N T +++ Y
Sbjct: 337 MESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSSSSKKPTSDFEQIVTY 396
Query: 371 LELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH 408
E CRRK +L F G V + + K CD C+H
Sbjct: 397 CEGSGCRRKKILESF-GEEFPVQQCK----KTCDACKH 429
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 199 bits (505), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 163/282 (57%), Gaps = 12/282 (4%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
++ I +DEAHCVS WGHDFRP Y+ L + PD+P++A+TATA+ V DI +L L
Sbjct: 801 KLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATASEQVRMDIIHNLEL 860
Query: 191 RDPNIINTGFDRPNLYLAASVKQDDIMADL--RKLTNFENQFEGSTIIYCPTKVICEKVC 248
++P + F+R NLY + K + + ++ + F+NQ + IIYC +K CE+
Sbjct: 861 KEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSRFKNQ---TGIIYCHSKKSCEQTS 917
Query: 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA 308
+ RNGI+ YHA + +R + + D I+V+ AT AFGMGIDKPDVR V H+
Sbjct: 918 AQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTV 977
Query: 309 PKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLN-DSEIQEHSKTMMKRV 367
P+ L YYQE GRAGRDG S C T++ D + Q + N D E +E +++V
Sbjct: 978 PRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNLDRENKEKHLNKLQQV 1037
Query: 368 EKYLELRT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH 408
Y + T CRRK +L++F +S++ K CDNCR+
Sbjct: 1038 MAYCDNVTDCRRKLVLSYFNED----FDSKL-CHKNCDNCRN 1074
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 150/277 (54%), Gaps = 17/277 (6%)
Query: 133 VLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRD 192
VL+A+DEAHC+SQWGHDFRP Y L +LR P +P +A+TATA DI L L D
Sbjct: 141 VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND 200
Query: 193 PNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEG-STIIYCPTKVICEKVCDVL 251
P I + FDRPN+ K L +L + + G S IIYC ++ E L
Sbjct: 201 PLIQISSFDRPNIRYMLMEK----FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARL 256
Query: 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD 311
GI YHA + R ++ F +D +++VVAT AFGMGI+KP+VR V+H+ P++
Sbjct: 257 QSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 316
Query: 312 LSAYYQEIGRAGRDGLSSVCYTFYKTAD--FTKNNMIFQPNLNDSEIQEHSKTMMKRVEK 369
+ +YYQE GRAGRDGL + FY AD + + + +P +I+ H M
Sbjct: 317 IESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMG---A 373
Query: 370 YLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ E +TCRR LLN+F E + P CD C
Sbjct: 374 FAEAQTCRRLVLLNYF-------GEGRQEPCGNCDIC 403
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 195 bits (496), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 165/310 (53%), Gaps = 21/310 (6%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
+ IDEAHCVSQWGHDFRP Y+ L L+ P++P+LA+TATAT V +D+ +L L
Sbjct: 575 LARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLV 634
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVL 251
+ + F+RPNL+ + K + D+ K EN F+ IIYC +++ CEKV + L
Sbjct: 635 NCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIK-ENHFDECGIIYCLSRMDCEKVSERL 693
Query: 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD 311
G + YH + +QR I + KD I ++ AT AFGMGI+KPDVR VIH+ PK
Sbjct: 694 QEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKS 753
Query: 312 LSAYYQEIGRAGRDGLSSVCYTFYKTADFTK-NNMIFQPNLNDS-------------EIQ 357
+ Y+QE GRAGRDG S C +Y D+ + +MI Q ++ S +
Sbjct: 754 IEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVASSGRLL 813
Query: 358 EHSKTMMKRVEKYLELRT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLELEQ 416
E + + R+ +Y E CRR L H G + K CDNC ++ L +
Sbjct: 814 ETNTENLLRMVRYCENEVECRRFLQLVHL-GEKFDSTNCK----KTCDNCCSSQSLIDKD 868
Query: 417 VPRGGRMVVE 426
V R +VE
Sbjct: 869 VTLITRQLVE 878
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 195 bits (495), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 122/366 (33%), Positives = 178/366 (48%), Gaps = 62/366 (16%)
Query: 44 SSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHD 103
SS T E Q +K +++Y++PE V TSF I +HC
Sbjct: 110 SSQTFTEQQQVQNKLMSGTLKLLYVSPEKVMT-TSFFHLI----------SHC------- 151
Query: 104 FRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 163
++ +AIDEAHC+SQWGHDFRP Y L L+
Sbjct: 152 ---------------------------KVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSC 184
Query: 164 LPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKL 223
P PI+A+TATA DI L L+ P++ FDRPN+ K + +L
Sbjct: 185 FPHAPIMALTATADHATRQDILRHLNLQSPHVYIGSFDRPNIRYTLVEK----FKPMEQL 240
Query: 224 TNFE-NQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLI 282
F Q S IIYC ++ E++ + L G+ + YHA + QR+++ F +D +
Sbjct: 241 CRFVLGQKGKSGIIYCNSRSKVERIAESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNV 300
Query: 283 KVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK 342
+VVVAT AFGMGI+K +VR V+H+ P+ + +YYQE GRAGRD L + FY+ AD+
Sbjct: 301 QVVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAW 360
Query: 343 NNMIF--QPNLNDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPD 400
+ I +P +I+ ++ + ++ E +TCRR LLN+F E Q P
Sbjct: 361 LHKILLEKPESPQRQIE---ALKLQAIGEFAESQTCRRLVLLNYF-------GEHQQKPC 410
Query: 401 KCCDNC 406
+ CD C
Sbjct: 411 QNCDIC 416
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 150/277 (54%), Gaps = 17/277 (6%)
Query: 133 VLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRD 192
VL+A+DEAHC+SQWGHDFRP Y L +LR P +P +A+TATA DI L L D
Sbjct: 141 VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDIIRLLGLND 200
Query: 193 PNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEG-STIIYCPTKVICEKVCDVL 251
P I + FDRPN+ K L +L + + G S IIYC ++ E L
Sbjct: 201 PLIQISSFDRPNIRYMLMEK----FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARL 256
Query: 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD 311
GI YHA + R ++ F +D +++VVAT AFGMGI+KP+VR V+H+ P++
Sbjct: 257 QSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 316
Query: 312 LSAYYQEIGRAGRDGLSSVCYTFYKTAD--FTKNNMIFQPNLNDSEIQEHSKTMMKRVEK 369
+ +YYQE GRAGRDGL + FY AD + + + +P +I+ H M
Sbjct: 317 IESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQLQDIERHKLNAMG---A 373
Query: 370 YLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ E +TCRR LLN+F E + P CD C
Sbjct: 374 FAEAQTCRRLVLLNYF-------GEGRQEPCGNCDIC 403
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 151/281 (53%), Gaps = 25/281 (8%)
Query: 134 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
LIAIDE HC SQWGHDFR Y L+ L+ VPIL +TATAT V+DD+ L +
Sbjct: 210 LIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKKMLGIPVA 269
Query: 194 NIINTGFDRPNLYLAASVK---QDDIMADLRKLTNFENQFEGST-IIYCPTKVICEKVCD 249
+ GF+R NL K +D+ + + + + +F G T IIYC ++ CEK+
Sbjct: 270 IVFRAGFNRANLNYKVLTKPGSEDECVEKI--VRTIKRKFSGKTGIIYCLSRNDCEKLAK 327
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L NGI+ + YHA++ R H +V I+V+VAT AFGMGIDKPDVR VIH+ P
Sbjct: 328 SLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATVAFGMGIDKPDVRFVIHHSLP 387
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLNDSEIQEHSKTMMKRVE 368
K + YYQE GRAGRDGL + C +Y+ +D F +++MI Q Q + V
Sbjct: 388 KSIENYYQESGRAGRDGLPATCILYYRMSDIFKQSSMIQQE-------QTGIANLYNMVR 440
Query: 369 KYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKC---CDNC 406
+ TCRR L HF E P C CD C
Sbjct: 441 YASDTVTCRRVKLAEHF--------EEAWEPSWCQKQCDVC 473
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 157/280 (56%), Gaps = 24/280 (8%)
Query: 134 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP-ILAVTATATPVVIDDICTSLMLRD 192
L+AIDEAHC+SQWGHDFRPSYR + L L D P I+A+TATATP V DDIC L ++
Sbjct: 135 LVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATPEVHDDICKQLHIQK 194
Query: 193 PNIINTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVL 251
N + TGF R NL + + D D +N + I+Y T+ +++ + L
Sbjct: 195 ENTVYTGFSRENLTFKVVKGENKDRFID----EYVQNNRHEAGIVYTATRKEADRIYERL 250
Query: 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD 311
RN ++ YH ++ RKE F+ D ++V+VAT AFGMGIDK ++R V+H PKD
Sbjct: 251 KRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKD 310
Query: 312 LSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEK-- 369
+ +YYQE GRAGRDGL+S C + D M+ + + SE +E K +K++ +
Sbjct: 311 MESYYQEAGRAGRDGLASECVLLFSPQDI----MVQRFLIEQSEHEEKQKQDLKKLRQMV 366
Query: 370 -YLELRTCRRKYLLNHFKGSSVTVAESQVPPDKC--CDNC 406
Y C ++++L +F + PD C C NC
Sbjct: 367 DYCHTEDCLQRFILMYF---------GEKEPDACGQCGNC 397
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 192 bits (487), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 150/285 (52%), Gaps = 27/285 (9%)
Query: 134 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
LIAIDE HC SQWGHDFR Y L+ L+ VPIL +TATAT V+DD+ L ++
Sbjct: 233 LIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKDMLGIQAA 292
Query: 194 NIINTGFDRPNLYLAASVK---QDDIMADLRKLTNFENQFEGST-IIYCPTKVICEKVCD 249
GF+R NL K +D+ ++ K + F G T IIYC ++ CEKV
Sbjct: 293 LTFRAGFNRSNLKYKVVQKPGSEDECTEEIAK--TIKRDFAGQTGIIYCLSRNDCEKVAK 350
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L +GI+ + YHA++ R H ++ I+V+VAT AFGMGIDKP+VR VIH+ P
Sbjct: 351 ALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNVRFVIHHSLP 410
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHS--KTMMKRV 367
K + YYQE GRAGRDG + C +Y+ AD K + + Q QE + + + V
Sbjct: 411 KSIENYYQESGRAGRDGQPATCILYYRLADIFKQSSMVQ--------QERTGIQNLYNMV 462
Query: 368 EKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKC---CDNCRHN 409
+ TCRR L HF E P C CD C +
Sbjct: 463 RYAADSSTCRRVKLAEHF--------EEAWEPSWCQKQCDTCENG 499
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 152/276 (55%), Gaps = 5/276 (1%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPN 194
I IDEAHCVS WGHDFRP Y+ L LR +P +A+TATA +V DI +L + +
Sbjct: 648 IVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATANEIVKKDIINTLRMENCL 707
Query: 195 IINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254
+ + F+RPNL+ K+D R ++N S IIYC ++ CE+V L +
Sbjct: 708 ELKSSFNRPNLFYEIKPKKDLYTELYRFISN--GHLHESGIIYCLSRTSCEQVAAKLRND 765
Query: 255 -GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLS 313
G++ YHA + +R+ I + K++VAT AFGMG+DK DVR VIH+ PK L
Sbjct: 766 YGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLE 825
Query: 314 AYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEKYLEL 373
YYQE GRAGRDG + C FY D + D+E +E + M+++V ++ E
Sbjct: 826 GYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGDAETKERQRQMLRQVIQFCEN 885
Query: 374 RT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH 408
+T CRRK +L +F G + + D CC+ +
Sbjct: 886 KTDCRRKQVLAYF-GENFDKVHCRKGCDICCEEATY 920
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 150/279 (53%), Gaps = 5/279 (1%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
+ IDEAHCVSQWGHDFR Y+ ++ LR P VP++A+TATA P V DI T L +
Sbjct: 789 LARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKIL 848
Query: 192 DPNIINTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDV 250
P + + F+R NL Y K + D + + ++ S IIYC ++ C+ + D
Sbjct: 849 RPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD-SGIIYCLSRRECDTMADT 907
Query: 251 LSRNGIQNRPYHAHISLKQRKEIHGLFV-KDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L R+G+ YHA +S R E+ ++ +D +V+ AT AFGMGIDKPDVR VIH P
Sbjct: 908 LQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLP 967
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKRV 367
K + YYQE GRAGRDG S C FY D T K ++ + + N + H + V
Sbjct: 968 KSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMV 1027
Query: 368 EKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ CRR LL +F + + PD CDNC
Sbjct: 1028 HYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNC 1066
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 155/279 (55%), Gaps = 17/279 (6%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
++ IAIDEAHC+SQWGHDFRP Y L L+ PD PI+A+TATA DI L L
Sbjct: 142 KVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNL 201
Query: 191 RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEG-STIIYCPTKVICEKVCD 249
++ + FDRPN+ K + +LT F +G S IIYC ++ E++ +
Sbjct: 202 KNLHKYIGSFDRPNIRYTLEEK----YKPMEQLTRFVLAQKGKSGIIYCNSRNKVERIAE 257
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L G+ YHA + R+ + F +D ++VVVAT AFGMGI+K +VR V H+ P
Sbjct: 258 SLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLP 317
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKRV 367
+ + +YYQE GRAGRD L + FY+ AD+ + ++ +P +I++H ++ +
Sbjct: 318 RSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHK---LEAI 374
Query: 368 EKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
++ E +TCRR LLN+F E + P CD C
Sbjct: 375 GEFAESQTCRRLVLLNYF-------GEHRQTPCNNCDIC 406
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 157/291 (53%), Gaps = 21/291 (7%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFRP Y+ L L+ P++P+LA+TATAT V +D+ +L L + +
Sbjct: 596 IDEAHCVSQWGHDFRPDYQGLGVLKQKFPNIPMLALTATATTSVKEDVVQALGLVNCVVF 655
Query: 197 NTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGI 256
F+RPNL+ + K + + D+ K EN F+ IIYC +++ CEKV + L G
Sbjct: 656 RQSFNRPNLWYSVVPKTNKCLEDIDKFIR-ENHFDECGIIYCLSRMDCEKVTEALRVFGH 714
Query: 257 QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYY 316
+ YH + +R + + KD I ++ AT AFGMGI+KPDVR VIH+ PK + Y+
Sbjct: 715 KAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 774
Query: 317 QEIGRAGRDGLSSVCYTFYKTADFTK-NNMIFQPNLNDSEIQ-------------EHSKT 362
QE GRAGRDG S C +Y D+ + +MI Q L +++ E +
Sbjct: 775 QECGRAGRDGQRSSCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYNCKASSGRMLETNTE 834
Query: 363 MMKRVEKYLELRT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEML 412
+ R+ Y E CRR L H G + CDNC +++L
Sbjct: 835 NLLRMVSYCENEVDCRRFLQLVHL-GEKFDSTNCK----NTCDNCSSSKIL 880
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 147/279 (52%), Gaps = 5/279 (1%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
+ IDEAHCVSQWGHDFR Y+ ++ LR P VP++A+TATA P V DI T L +
Sbjct: 797 LARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKIL 856
Query: 192 DPNIINTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDV 250
P + + F+R NL Y K + D + + ++ S IIYC ++ C+ + D
Sbjct: 857 RPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD-SGIIYCLSRRECDTMADT 915
Query: 251 LSRNGIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L R G+ YHA +S R E+ H +D +V+ AT AFGMGIDKPDVR VIH P
Sbjct: 916 LQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLP 975
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKRV 367
K + YYQE GRAGRDG S C FY D T K ++ + + N + H + V
Sbjct: 976 KSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDGNYHTKETHVNNLYSMV 1035
Query: 368 EKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ CRR LL +F + PD CDNC
Sbjct: 1036 HYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVSCDNC 1074
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 188 bits (477), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 160/292 (54%), Gaps = 42/292 (14%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
R+ LI+IDEAHC SQWGHDFRP Y+ LS L+ P VP++A+TATAT V +D+ ML
Sbjct: 210 RLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDLIE--ML 267
Query: 191 RDPNIIN--TGFDRPNLYLAASVKQ-------DDIMADLRKLTNFENQFEGSTIIYCPTK 241
P + + +RPNL+ + K D+I +R+ ++ N G I+YC ++
Sbjct: 268 HIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRE--SYSNNESG--IVYCFSR 323
Query: 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVR 301
CE++ L GI YHA + R+++H + K+ ++V+V T AFGMGI+KPDVR
Sbjct: 324 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 383
Query: 302 CVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF-TKNNMIFQP-----NLNDSE 355
VIH+ K + YYQE GRAGRDGL S C F+++AD +++M+F NL D
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMVFYEYSGLQNLYD-- 441
Query: 356 IQEHSKTMMKRVEKYLELRT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ +Y + +T CRR HF E + CDNC
Sbjct: 442 -----------IVRYCQSKTKCRRSAFFRHF-------GEPSQDCNGMCDNC 475
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 162/290 (55%), Gaps = 12/290 (4%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
L R + +DEAHCVSQWGHDFRP YR L L+ P VP++A+TATAT V D+
Sbjct: 323 LDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQDVL 382
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKL--TNFENQFEGSTIIYCPTKVI 243
SL + ++ FDR NL VK + + L++L F++Q S I+YC +K
Sbjct: 383 KSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQ---SGIVYCLSKSE 439
Query: 244 CEKVCDVLSRN-GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
C V L+ ++ YHA + KQR ++ + +++V AT AFGMGIDK DVR
Sbjct: 440 CVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRF 499
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNN-MIFQPNLNDSEIQEHSK 361
VIH K + +YYQE GRAGRDGL + C Y+ DF++ M+ + + + +
Sbjct: 500 VIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRNGQGRNMDRFKSAM 559
Query: 362 TMMKRVEKYLELRT-CRRKYLLNHFKGS-SVTVAESQVPPDKCCDNCRHN 409
K++++Y EL+T CRR+ LL +F S + +S + P CDNC +
Sbjct: 560 AQAKKMQQYCELKTECRRQMLLEYFGESFDRMICKSSLNP---CDNCERS 606
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 25/305 (8%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R IA+DE HC SQWGHDFRP Y+ L L+ P+ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVK---QDDIMADLRKLTNFENQFEG-S 233
V+ D L + F+RPNLY K +D + D+ KL N +++G S
Sbjct: 259 NHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLIN--GRYKGQS 316
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
IIYC ++ E+V L GI YHA++ + + +H + + I+VVVAT AFGM
Sbjct: 317 GIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGM 376
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLN 352
GIDKPDVR VIH+ K + YYQE GRAGRD + + C +Y D F ++M+ N+
Sbjct: 377 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVG 436
Query: 353 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEML 412
++ E V + CRR + HF V +E+ +K CDNC +
Sbjct: 437 QQKLYE-------MVSYCQNISKCRRVLMAQHF--DEVWNSEA---CNKMCDNCCKDSAF 484
Query: 413 ELEQV 417
E + +
Sbjct: 485 ERKNI 489
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 25/305 (8%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R IA+DE HC SQWGHDFRP Y+ L L+ P+ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVK---QDDIMADLRKLTNFENQFEG-S 233
V+ D L + F+RPNLY K +D + D+ KL N +++G S
Sbjct: 259 NHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLIN--GRYKGQS 316
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
IIYC ++ E+V L GI YHA++ + + +H + + I+VVVAT AFGM
Sbjct: 317 GIIYCFSQKDSEQVTVSLRNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGM 376
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLN 352
GIDKPDVR VIH+ K + YYQE GRAGRD + + C +Y D F ++M+ N+
Sbjct: 377 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVG 436
Query: 353 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEML 412
++ E V + CRR + HF V +E+ +K CDNC +
Sbjct: 437 QQKLYE-------MVSYCQNISKCRRLLMAQHF--DEVWNSEA---CNKMCDNCCKDSAF 484
Query: 413 ELEQV 417
E + +
Sbjct: 485 ERKNI 489
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 146/286 (51%), Gaps = 19/286 (6%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
+ IDEAHCVSQWGHDFRP Y+ L+ LR VP++A+TATA P V DI L +
Sbjct: 741 LARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQLKMT 800
Query: 192 DPNIINTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDV 250
P I F+R NL Y K + D + ++ S IIYC ++ C+ + D
Sbjct: 801 KPQIFTMSFNRDNLKYEVLPKKPKRVALDCVEWIK-KHHPNDSGIIYCLSRHECDTMADT 859
Query: 251 LSRNGIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L + G+ YHA ++ R + H +D +V+ AT AFGMGIDKPDVR VIH P
Sbjct: 860 LQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLP 919
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQ--PNLNDSEIQEHSKTMMKRV 367
K + YYQE GRAGRDG +S C FY D T+ + Q + N Q H + V
Sbjct: 920 KSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEKDGNSHTKQTHFNNLYSMV 979
Query: 368 EKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKC-------CDNC 406
+ CRR LL++F E+ P+ C CDNC
Sbjct: 980 HYCENVVECRRMQLLSYF-------GENNFNPNFCKEHTQVACDNC 1018
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 182 bits (461), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 154/302 (50%), Gaps = 16/302 (5%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL--PDVPILAVTATATPVVIDD 183
L R + IDEAHCVSQWGHDFRP Y LS LR P VPI+A+TATATP ++ D
Sbjct: 363 LHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTD 422
Query: 184 ICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFE-----GSTIIYC 238
L +++ + + F R NL K D I R L N + + S I+YC
Sbjct: 423 ARDHLKMQNSKLFISSFVRDNL------KYDLIPKAARSLINVVEKMKQLYPGKSGIVYC 476
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
++ CE V +L++ G+ YHA ++ R + ++ + V+ AT AFGMGIDKP
Sbjct: 477 LSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMGIDKP 536
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK-NNMIFQPNLNDSEIQ 357
DVR VIHY PK + YYQE GRAGRDG+ S C Y D + MI + N
Sbjct: 537 DVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGNTTTGVRS 596
Query: 358 EHSKTMMKRVEKYLELRTCRRKYLLNHFKG--SSVTVAESQVPPDKCCDNCRHNEMLELE 415
H +++ V + CRRK L+ HF + S+ P D C ++ E + L
Sbjct: 597 MHLNNVLQVVAYCENVSVCRRKMLVEHFGEVYDEQSCRNSKTPCDICERQRKNAEAIRLF 656
Query: 416 QV 417
V
Sbjct: 657 DV 658
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 164/305 (53%), Gaps = 25/305 (8%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R+ +A+DE HC SQWGHDFRP Y+ L L+ P++ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVK---QDDIMADLRKLTNFENQFEG-S 233
V+ D L + F+RPNLY K +D + ++ L N +++G S
Sbjct: 259 NHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLIN--GRYKGKS 316
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
IIYC ++ E+V L + G++ YHA++ + R ++H + + ++VVVAT AFGM
Sbjct: 317 GIIYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGM 376
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLN 352
GIDKPDVR VIH+ K + YYQE GRAGRD + C +Y D F ++M+ N+
Sbjct: 377 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVG 436
Query: 353 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEML 412
++ E V + CRR + HF V A++ +K CDNC ++
Sbjct: 437 QQKLYE-------MVSYCQNISKCRRALIAQHF--DEVWNADA---CNKMCDNCCKDDSF 484
Query: 413 ELEQV 417
E + +
Sbjct: 485 EKKNI 489
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 154/282 (54%), Gaps = 13/282 (4%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I IDEAHCVSQWGHDFRP Y+ L L+ P+VP +A+TATATP V DI L L+
Sbjct: 859 ISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNLK 918
Query: 192 DPNIINTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQ-FEGSTIIYCPTKVICEKVCD 249
+ + F+R NL Y K + D+ + + Q F G IIYC ++ C++
Sbjct: 919 NCKWFLSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKPQHFSG--IIYCLSRKECDETSK 976
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
+ ++G++ YHA ++ R+ ++ ++V+ AT AFGMGIDKPDVR V+HY P
Sbjct: 977 KMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLP 1036
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTM----MK 365
K + YYQE GRAGRDG + C +Y +D + + +D +Q + K + +
Sbjct: 1037 KSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLD---SDKALQYNVKKIHVDNLY 1093
Query: 366 RVEKYLE-LRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
R+ Y E L CRR L++F G T + + CDNC
Sbjct: 1094 RIVGYCENLTDCRRAQQLDYF-GEHFTSEQCLENRETACDNC 1134
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 157/294 (53%), Gaps = 25/294 (8%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R+ A+DE HC SQWGHDFRP Y+ L L+ P+ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVK---QDDIMADLRKLTNFENQFEG-S 233
V+ D+ L + F+RPNL+ K +D D+ KL N +++G S
Sbjct: 259 NHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLIN--GRYKGQS 316
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
IIYC ++ E++ L + GI YHA++ + + ++H + + ++VVVAT AFGM
Sbjct: 317 GIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVAFGM 376
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLN 352
GIDKPDVR VIH+ K + YYQE GRAGRD + C +Y D F ++M+ N+
Sbjct: 377 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRISSMVVMENVG 436
Query: 353 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
++ E V + CRR + HF V A++ +K CDNC
Sbjct: 437 QQKLYE-------MVSYCQNVSKCRRVLIAQHF--DEVWNADA---CNKMCDNC 478
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 171 bits (434), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 143/280 (51%), Gaps = 7/280 (2%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
+ IDEAHCVSQWGHDFR Y+ L+ LR VP++A+TATA P V DI L +
Sbjct: 519 LARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEML 578
Query: 192 DPNIINTGFDRPNL-YLAASVKQDDIMAD-LRKLTNFENQFEGSTIIYCPTKVICEKVCD 249
P + F+R NL Y K + D L + + G IIYC ++ C+
Sbjct: 579 KPQVFTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSG--IIYCLSRHECDTTAA 636
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFV-KDLIKVVVATCAFGMGIDKPDVRCVIHYGA 308
+L + G+ YHA ++ R + +V ++ +V+ AT AFGMGIDKPDVR VIH
Sbjct: 637 ILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASL 696
Query: 309 PKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKR 366
PK + YY E GRAGRDG S C FY +D T + ++ + + N Q H +
Sbjct: 697 PKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTHFNNLYSM 756
Query: 367 VEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
V + CRR LL +F + + P+ CDNC
Sbjct: 757 VHYCENVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDNC 796
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 162 bits (410), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 148/293 (50%), Gaps = 23/293 (7%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
+ + +DEAHCVSQWGHDFRP Y L LR L P +A+TATATP V +D+ +L L+
Sbjct: 151 LSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLK 210
Query: 192 DP-NIINTGFDRPNLYLAASVKQ--DDIMADLRKL------TNFENQFEGSTIIYCPTKV 242
P I T R NL+ K+ D +L+ + G I+YC T+
Sbjct: 211 KPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTRE 270
Query: 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
CE++ LS G+ + YHA + +R + ++++ + V+VAT +FGMG+DK +VR
Sbjct: 271 ACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRF 330
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKT 362
V H+ K ++ YYQE GRAGRDG S C +Y D + + + + + + + +K
Sbjct: 331 VAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKA 390
Query: 363 MMK-------RVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH 408
K + + E CR + +F + A K CD+C++
Sbjct: 391 SDKATIMAFDALVTFCEELGCRHAAIAKYFGDALPACA-------KGCDHCQN 436
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 119/224 (53%), Gaps = 3/224 (1%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
L +P I L IDEAHC+S+WGHDFRP Y L +LR L P+LA+TATAT + D+
Sbjct: 125 LKSVP-ISLFVIDEAHCISEWGHDFRPDYSKLGQLRKKLGHPPVLALTATATKETLQDVM 183
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICE 245
L L+ +RPN+ L D R + EN +G I+YCPT+ +
Sbjct: 184 NLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVEN-LQGPGIVYCPTRKWAK 242
Query: 246 KVC-DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
++ ++ S+ + YH + R I F+ + + V+ T AFGMG+DKPD+R VI
Sbjct: 243 ELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVI 302
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQ 348
H+ P+ A+ QEIGRAGRDG SV DF I Q
Sbjct: 303 HFHLPQTAEAFMQEIGRAGRDGKPSVSILLRAPGDFELQEQIIQ 346
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 117/214 (54%), Gaps = 3/214 (1%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCL--SELRLPLPDVPILAVTATATPVVIDDICTSLM 189
+ L+ +DEAHCVS+W H+FRPSY L S L L ILA+TATAT + + + +SL
Sbjct: 384 VSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQAVMSSLE 443
Query: 190 LRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFE-GSTIIYCPTKVICEKVC 248
+ N+I R N L+ S+ + M DL L E S I+YC + + +
Sbjct: 444 IPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQYETDMIS 503
Query: 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA 308
L N I + YH+ + K R I F + I+VVVAT AFGMG+DK DV VIH+
Sbjct: 504 KYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSV 563
Query: 309 PKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK 342
P + Y QEIGRAGRDG S C+ FY + K
Sbjct: 564 PGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLK 597
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 135 bits (339), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 108/219 (49%), Gaps = 6/219 (2%)
Query: 122 PILFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPLP----DVPILAVTAT 175
P+ L R P++ L I +DEAHC+ QWG FRP+YR L LR L +P+ A TAT
Sbjct: 124 PVWNLLRQPQVKLQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDKGQIPLAAFTAT 183
Query: 176 ATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTI 235
A + I L LR P RP L+L + + + + S +
Sbjct: 184 ADRQQQNLIVEGLNLRSPECFQVSPHRPQLHLKVKMVLSEYCRRQQLRRFLLKHLQESGL 243
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
IY T+ + + L G + YH + QR+++ ++ I VV T AFG+GI
Sbjct: 244 IYVRTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCTNAFGLGI 303
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
DKPD R V+HY AP L Y QE+GRAGRD + C T
Sbjct: 304 DKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECLTL 342
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 16/226 (7%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDIC 185
+++P + IDEAHC+SQW H+FRP Y R LR + L +TATAT D+
Sbjct: 594 AQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDVA 653
Query: 186 TSLML-RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVIC 244
L + +P++ NL+L+ S+ +D A L L Q S IIYC +
Sbjct: 654 QHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDT 713
Query: 245 EKVCDVLSR-------NGIQNRP-------YHAHISLKQRKEIHGLFVKDLIKVVVATCA 290
E++ +L G R YHA + ++R+ + F++ ++VVVAT A
Sbjct: 714 ERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVA 773
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
FGMG+D+PDVR V+H G P +Y Q +GRAGRDG + C+ F +
Sbjct: 774 FGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQ 819
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 118/225 (52%), Gaps = 18/225 (8%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDIC 185
+++P I IDE HC+SQW H+FRP Y R LR + L +TATAT D+
Sbjct: 616 AQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVA 675
Query: 186 TSLMLRDPNIINTGFDRP-NLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVIC 244
L + ++ + P NL+L+ S+ +D A + L + S IIYC + I
Sbjct: 676 QHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVIIYCTRERIQ 735
Query: 245 EKVCDVL----SRNGIQNRP-----------YHAHISLKQRKEIHGLFVKDLIKVVVATC 289
+L S G +RP YHA +S ++R+ + F++ +++VVAT
Sbjct: 736 NGWLALLRTCLSMVG-DSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVVATV 794
Query: 290 AFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
AFGMG+D+PDVR V+H G P +Y Q IGRAGRDG + C+ F
Sbjct: 795 AFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 88/160 (55%), Gaps = 5/160 (3%)
Query: 227 ENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVV 286
+ EG TIIY PT+ + L G++ Y+A + K +++H F + ++VVV
Sbjct: 493 QKDLEGLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVV 552
Query: 287 ATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346
AT AFGMGIDK +VR +IHYG + L AYYQE GRAGRDG + C + AD ++ +
Sbjct: 553 ATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY---ADLSRAPTL 609
Query: 347 FQPNLNDSEIQEHSKTMMKRVEKY-LELRTCRRKYLLNHF 385
P+ E E + M+ +Y + CR K L+ +F
Sbjct: 610 L-PSRRSKEQTEQAYKMLSDCFRYGMNTSQCRAKILVEYF 648
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 81/155 (52%), Gaps = 16/155 (10%)
Query: 122 PILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYR---------CLSELRLPLPDVPILAV 172
P+ L++ I L AIDEAHCVS+WGHDFRP YR C S L DVPI+A+
Sbjct: 272 PLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMAL 331
Query: 173 TATATPVVIDDICTSLML-RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFE 231
TATAT V +DI SL L ++ I+ T F RPNL SVK + + +++ F+
Sbjct: 332 TATATVNVQEDILESLHLSKETKIVLTSFFRPNLQF--SVKH----SRTKFASSYAKDFQ 385
Query: 232 GSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266
+Y K K V+SR + + +H S
Sbjct: 386 NLVDLYSEKKNSTGKKLAVISRESEEQTDFGSHDS 420
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 126 LSRIPRIVLIAIDEAHCV---SQWGHDFRPSYRCLSELRLPLPDVPILAVT--ATATPVV 180
L+ + R+ + IDEAH + W + R LS L PL +L+ T V
Sbjct: 1310 LATLGRLARVVIDEAHLLLTSGAWRTALSRASR-LSGLYAPLH---LLSATFPRQLEMVA 1365
Query: 181 IDDICTSL-MLRDPNIINTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGS--TII 236
CT+ +LR+ T R N+ Y + + DLR L FEG II
Sbjct: 1366 RQTFCTNFYVLRE-----TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAII 1420
Query: 237 YCPTKVICEKVCDVLSRNGIQNRP----YHAHISLKQRKEIHGLF--VKDLIKVVVATCA 290
+C TK E + L ++ + Y +S ++R+ F ++++AT A
Sbjct: 1421 FCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKA 1480
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346
FG+GI+ VR V+HYG P Y QE GRAGRDG ++ FY+ D T ++ +
Sbjct: 1481 FGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYV 1536
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 126 LSRIPRIVLIAIDEAHCV---SQWGHDFRPSYRCLSELRLPLPDVPILAVT--ATATPVV 180
L+ + R+ + IDEAH + W + R LS L PL +L+ T V
Sbjct: 1491 LATLGRLARVVIDEAHLLLTSGAWRTALSRASR-LSGLYAPLH---LLSATFPRQLEMVA 1546
Query: 181 IDDICTSL-MLRDPNIINTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGS--TII 236
CT+ +LR+ T R N+ Y + + DLR L FEG II
Sbjct: 1547 RQTFCTNFYVLRE-----TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAII 1601
Query: 237 YCPTKVICEKVCDVLSRNGIQNRP----YHAHISLKQRKEIHGLF--VKDLIKVVVATCA 290
+C TK E + L ++ + Y +S ++R+ F ++++AT A
Sbjct: 1602 FCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKA 1661
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346
FG+GI+ VR V+HYG P Y QE GRAGRDG ++ FY+ D T ++ +
Sbjct: 1662 FGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYV 1717
>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium
discoideum GN=ddx42 PE=3 SV=1
Length = 986
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 14/228 (6%)
Query: 118 LPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
L D+ L +++ R+ + +DEA + +G F P + LS + PD L +AT
Sbjct: 439 LIDMIKLKATKLNRVSYLVLDEADKMFDFG--FGP--QVLSIVNHVRPDRQTLLFSATFK 494
Query: 178 PVVIDDICTSLMLRDPNIINTGF-DRPNLYLAASVKQDDIMADLRKLTNFENQF-----E 231
P V + T +L DP I+ G N + V+ + +D K NQ +
Sbjct: 495 PNVEEFART--ILSDPIKISIGMIGSANSDITQIVQV--LKSDSDKWNWLTNQLALLLSQ 550
Query: 232 GSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAF 291
GS +I+ TKV E++ L++ G Q H + +R + F + I +++AT
Sbjct: 551 GSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVA 610
Query: 292 GMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
G+D P ++ V++Y +D+ ++ IGR GR G + V YT D
Sbjct: 611 ARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKD 658
>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana
GN=RH46 PE=2 SV=2
Length = 645
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 24/229 (10%)
Query: 123 ILFLSRIP--RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPI----LAVTATA 176
IL + RI ++ + +DEA + G F P R + + +VP L TAT
Sbjct: 297 ILEMKRISLHQVSYLVLDEADRMLDMG--FEPQIRKI------VNEVPTKRQTLMYTAT- 347
Query: 177 TPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQD-DIMADLRKLTNFE----NQFE 231
P + I L++ +P +N G + L S+ Q +++A + K + E +Q
Sbjct: 348 WPKEVRKIAADLLV-NPAQVNIG-NVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEP 405
Query: 232 GSTII-YCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290
GS II +C TK +C+++ L+R H S +R ++ F V+VAT
Sbjct: 406 GSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDV 464
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
G+D D+R V++Y P + Y IGR GR G + + YTF+ D
Sbjct: 465 AARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 513
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana
GN=RH21 PE=2 SV=1
Length = 733
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 190 LRDPNIINTGFDRPNLYLAAS----VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICE 245
LR+P ++ G L + +K+ + L+KL + E + I++ TK C+
Sbjct: 533 LRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKL--LDELGEKTAIVFVNTKKNCD 590
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
+ L + G + H S +QR+ F V+VAT G GID PDV VI+
Sbjct: 591 SIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVIN 650
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD----FTKNNMIFQPN 350
Y PK + Y IGR GR G S V +F D + M+ Q N
Sbjct: 651 YDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSN 699
>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp.
japonica GN=Os01g0549400 PE=2 SV=2
Length = 792
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 220 LRKLTN-FENQFEGSTI-IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLF 277
LR+L +Q GS + I+C TK +C+++ L+R H S +R+++ F
Sbjct: 382 LRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHF 440
Query: 278 VKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
++VAT G+D D+R VI+Y P + Y IGR GR G + V YTF+
Sbjct: 441 RSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFF 498
>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DED1 PE=3 SV=1
Length = 627
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 213 QDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKE 272
++D + DL +N EG T+I+ TK + + D L G + H + +R+
Sbjct: 403 KNDTLLDLLAASN-----EGLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERER 457
Query: 273 IHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCY 332
F ++VAT G+D P+V VI++ P D+ Y IGR GR G + V
Sbjct: 458 ALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVAT 517
Query: 333 TFYKTAD 339
TF+ +
Sbjct: 518 TFFNRGN 524
>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana
sylvestris PE=2 SV=1
Length = 607
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 235 IIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMG 294
II+C TK +C+++ L+RN H S +R + F V+VAT G
Sbjct: 394 IIFCSTKKMCDQLSRNLTRN-FGAAAIHGDKSQGERDYVLSQFRAGRSPVLVATDVAARG 452
Query: 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
+D D+R VI+Y P + Y IGR GR G S + YTF+ D
Sbjct: 453 LDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQD 497
>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana
GN=RH14 PE=1 SV=2
Length = 619
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 24/229 (10%)
Query: 123 ILFLSRIP--RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPI----LAVTATA 176
IL + RI +I + +DEA + G F P R + + ++P L TAT
Sbjct: 294 ILEMRRISLRQISYLVLDEADRMLDMG--FEPQIRKI------VKEIPTKRQTLMYTAT- 344
Query: 177 TPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQD-DIMADLRKLTNFE----NQFE 231
P + I L++ +P +N G + L S+ Q +++A + K E +Q
Sbjct: 345 WPKGVRKIAADLLV-NPAQVNIG-NVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEP 402
Query: 232 GS-TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290
GS II+C TK +C+++ L+R H S +R + F V+VAT
Sbjct: 403 GSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDV 461
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
G+D D+R V++Y P + Y IGR GR G + +TF+ D
Sbjct: 462 AARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQD 510
>sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana
GN=RH30 PE=2 SV=2
Length = 591
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 21/228 (9%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R+ + +DEA + G F P R +S++R PD L +AT P ++ +
Sbjct: 308 TNLKRVTYLVLDEADRMLDMG--FEPQIRKIVSQIR---PDRQTLLWSAT-WPREVETLA 361
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQ-DDIMADLRK----LTNFENQFEGSTI-IYCP 239
LRDP G +L S+ Q +I+ K LT + +GS I I+
Sbjct: 362 RQF-LRDPYKAIIG--STDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVE 418
Query: 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
TK C++V L +G H + +R + F ++ AT G+D D
Sbjct: 419 TKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKD 478
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIF 347
++CV++Y P L Y IGR GR G + +TF FT +N F
Sbjct: 479 IKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTF-----FTHDNAKF 521
>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DED1 PE=3 SV=1
Length = 664
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290
EG TI++ TK + + + D L G H S +R++ F ++VAT
Sbjct: 432 EGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAV 491
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNN 344
G+D P+V VI+Y P D+ Y IGR GR G + F F +NN
Sbjct: 492 AARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAF-----FNRNN 540
>sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp.
japonica GN=Os01g0911100 PE=2 SV=2
Length = 666
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 21/228 (9%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDICTSLM 189
R+ + +DEA + G F P R ++++R PD L +AT P ++ +
Sbjct: 398 RVTYLVLDEADRMLDMG--FEPQIRKIVAQIR---PDRQTLYWSAT-WPREVESLARQF- 450
Query: 190 LRDPNIINTGFDRPNLYLAASVKQD-DIMADLRKLTNFE----NQFEGSTI-IYCPTKVI 243
L++P + G P+L S++Q +++++ K + +GS I I+ TK
Sbjct: 451 LQNPYKVIIG--SPDLKANHSIQQIIEVISEHEKYPRLSKLLSDLMDGSRILIFFQTKKD 508
Query: 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCV 303
C+KV L +G H + +R + F ++ AT G+D D++CV
Sbjct: 509 CDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCV 568
Query: 304 IHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNL 351
I++ P L Y IGR GR G S +TF FT +N F NL
Sbjct: 569 INFDFPTTLEDYIHRIGRTGRAGASGTAFTF-----FTLSNAKFSRNL 611
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp.
japonica GN=Os01g0197200 PE=3 SV=2
Length = 494
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 14/220 (6%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDICTSLM 189
R+ + +DEA + G F P + +S++R PD L +AT P ++ + + +
Sbjct: 238 RVTYLVLDEADRMLDMG--FEPQIKKIVSQIR---PDRQTLYWSAT-WPKEVEQLARNFL 291
Query: 190 LRDPNIINTGFD--RPNLYLAASVKQDDIMADLRKLTNF-ENQFEGSTI-IYCPTKVICE 245
DP + G + + N ++ V+ KL N E+ +GS I I+ TK C+
Sbjct: 292 F-DPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCD 350
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
++ L +G H S +R + F ++ AT G+D DV+ VI+
Sbjct: 351 QITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVIN 410
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD--FTKN 343
Y P L Y IGR GR G YTF+ A+ F K+
Sbjct: 411 YDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKD 450
>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP1 PE=1 SV=2
Length = 617
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 229 QFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT 288
+ +G T+I+ TK + +++ D L + H + +R+ F ++ ++VAT
Sbjct: 409 EHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVAT 468
Query: 289 CAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKT 337
G+D P+V VI+Y P D+ Y IGR GR G + V +F+ +
Sbjct: 469 AVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNS 517
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,774,410
Number of Sequences: 539616
Number of extensions: 7272758
Number of successful extensions: 17374
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 15980
Number of HSP's gapped (non-prelim): 1429
length of query: 451
length of database: 191,569,459
effective HSP length: 121
effective length of query: 330
effective length of database: 126,275,923
effective search space: 41671054590
effective search space used: 41671054590
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)