Query psy10478
Match_columns 451
No_of_seqs 404 out of 3710
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 19:12:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0514 RecQ Superfamily II DN 100.0 2.6E-66 5.7E-71 523.7 29.5 357 12-450 62-419 (590)
2 PLN03137 ATP-dependent DNA hel 100.0 1.6E-61 3.4E-66 514.5 30.0 366 12-450 505-888 (1195)
3 TIGR00614 recQ_fam ATP-depende 100.0 1.2E-56 2.7E-61 460.8 34.0 375 12-450 56-430 (470)
4 TIGR01389 recQ ATP-dependent D 100.0 2.3E-56 5E-61 471.4 32.1 337 36-450 77-413 (591)
5 PRK11057 ATP-dependent DNA hel 100.0 4.2E-56 9.1E-61 468.5 33.3 354 13-450 71-424 (607)
6 KOG0351|consensus 100.0 1.4E-56 3.1E-61 477.0 24.6 347 12-410 309-663 (941)
7 KOG0352|consensus 100.0 2.4E-56 5.2E-61 421.5 19.7 340 17-410 72-434 (641)
8 KOG0353|consensus 100.0 8.2E-51 1.8E-55 379.1 17.3 322 36-410 158-528 (695)
9 KOG0331|consensus 100.0 2.4E-40 5.3E-45 329.3 20.6 316 24-347 119-457 (519)
10 KOG0328|consensus 100.0 2E-38 4.4E-43 285.8 20.4 306 31-346 62-381 (400)
11 COG0513 SrmB Superfamily II DN 100.0 3.5E-38 7.7E-43 325.3 20.2 312 23-344 56-387 (513)
12 PTZ00110 helicase; Provisional 100.0 1.1E-37 2.4E-42 324.4 21.8 316 23-346 157-492 (545)
13 KOG0330|consensus 100.0 3.9E-38 8.4E-43 295.6 14.6 312 23-346 88-415 (476)
14 PLN00206 DEAD-box ATP-dependen 100.0 5.8E-37 1.3E-41 318.1 23.8 314 23-346 148-483 (518)
15 PRK11776 ATP-dependent RNA hel 100.0 3.6E-37 7.8E-42 316.6 21.8 314 23-346 31-357 (460)
16 PRK04837 ATP-dependent RNA hel 100.0 2.8E-37 6.1E-42 314.1 19.4 313 23-344 35-368 (423)
17 PRK01297 ATP-dependent RNA hel 100.0 1.6E-36 3.5E-41 312.7 21.9 317 21-344 112-448 (475)
18 KOG0333|consensus 100.0 3.9E-36 8.3E-41 291.3 22.4 250 39-343 353-629 (673)
19 KOG0342|consensus 100.0 4.6E-36 1E-40 289.5 21.7 321 19-349 105-448 (543)
20 PRK10590 ATP-dependent RNA hel 100.0 7.2E-36 1.6E-40 306.0 24.0 312 23-345 28-359 (456)
21 PRK11192 ATP-dependent RNA hel 100.0 5.4E-36 1.2E-40 305.9 22.0 308 27-344 32-358 (434)
22 PRK04537 ATP-dependent RNA hel 100.0 5.6E-36 1.2E-40 312.8 20.7 314 23-345 36-371 (572)
23 PRK11634 ATP-dependent RNA hel 100.0 1.2E-35 2.7E-40 312.1 23.2 314 23-346 33-360 (629)
24 KOG0338|consensus 100.0 3.3E-36 7.1E-41 290.8 16.1 315 25-350 210-545 (691)
25 PTZ00424 helicase 45; Provisio 100.0 1.5E-35 3.3E-40 300.0 19.8 313 23-346 55-382 (401)
26 KOG0336|consensus 100.0 6.9E-35 1.5E-39 274.9 18.8 211 130-347 366-581 (629)
27 KOG0343|consensus 100.0 3.2E-34 7E-39 279.3 23.5 270 9-344 150-428 (758)
28 TIGR03817 DECH_helic helicase/ 100.0 1.2E-34 2.6E-39 310.3 21.6 321 6-337 19-385 (742)
29 KOG0345|consensus 100.0 6.5E-35 1.4E-39 279.8 17.2 320 20-349 30-375 (567)
30 KOG0326|consensus 100.0 2.2E-34 4.7E-39 263.8 17.2 274 8-347 161-438 (459)
31 KOG0335|consensus 100.0 5.1E-33 1.1E-37 272.6 18.8 313 26-343 104-449 (482)
32 KOG0341|consensus 100.0 3.6E-33 7.7E-38 261.7 16.8 269 8-338 254-528 (610)
33 KOG0346|consensus 100.0 2.4E-32 5.2E-37 260.0 19.4 274 7-341 100-413 (569)
34 KOG0340|consensus 100.0 3.1E-32 6.7E-37 253.2 19.5 326 12-348 18-371 (442)
35 KOG0332|consensus 100.0 1.1E-30 2.3E-35 244.3 19.1 266 7-339 167-444 (477)
36 KOG0339|consensus 100.0 1.4E-30 3.1E-35 251.6 20.1 277 8-348 304-585 (731)
37 KOG0347|consensus 100.0 6.1E-31 1.3E-35 256.5 17.0 255 34-347 289-579 (731)
38 KOG0348|consensus 100.0 4.1E-31 8.8E-36 257.0 14.7 312 24-347 165-563 (708)
39 PRK09751 putative ATP-dependen 100.0 2.6E-30 5.6E-35 286.9 22.0 249 36-337 77-384 (1490)
40 PRK13767 ATP-dependent helicas 100.0 4.4E-30 9.6E-35 280.3 21.8 249 36-336 124-396 (876)
41 TIGR00580 mfd transcription-re 100.0 2E-29 4.3E-34 272.9 23.4 238 37-338 529-770 (926)
42 COG1201 Lhr Lhr-like helicases 100.0 8.7E-30 1.9E-34 267.3 18.9 306 21-337 25-361 (814)
43 KOG4284|consensus 100.0 7.5E-30 1.6E-34 252.6 15.7 269 8-340 101-381 (980)
44 KOG0344|consensus 100.0 8.2E-30 1.8E-34 251.7 15.0 315 25-346 165-503 (593)
45 PRK02362 ski2-like helicase; P 100.0 2.9E-29 6.2E-34 271.1 19.4 292 30-339 36-398 (737)
46 PRK10917 ATP-dependent DNA hel 100.0 2.6E-28 5.7E-33 260.3 25.2 237 37-336 339-587 (681)
47 PRK10689 transcription-repair 100.0 2E-28 4.4E-33 270.4 24.9 236 37-337 678-918 (1147)
48 TIGR00643 recG ATP-dependent D 100.0 1.9E-28 4.2E-33 259.6 22.9 241 36-336 312-564 (630)
49 KOG0327|consensus 100.0 1.2E-28 2.6E-33 232.4 18.3 207 130-346 168-378 (397)
50 PRK00254 ski2-like helicase; P 100.0 1.5E-28 3.3E-33 264.9 18.6 302 30-346 36-397 (720)
51 KOG0350|consensus 100.0 1.1E-28 2.3E-33 238.6 12.8 307 33-350 183-552 (620)
52 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.7E-27 3.7E-32 255.4 21.3 300 32-350 16-348 (819)
53 PRK01172 ski2-like helicase; P 100.0 1.7E-27 3.6E-32 255.6 20.9 304 31-348 35-389 (674)
54 KOG0337|consensus 100.0 1.3E-28 2.9E-33 233.5 10.8 312 23-344 48-374 (529)
55 PRK11664 ATP-dependent RNA hel 100.0 4.6E-27 9.9E-32 252.6 22.0 295 33-345 20-346 (812)
56 PHA02653 RNA helicase NPH-II; 100.0 6.7E-27 1.4E-31 245.4 22.6 300 25-340 171-516 (675)
57 KOG0334|consensus 100.0 2.4E-27 5.3E-32 247.9 18.4 313 24-344 393-726 (997)
58 PRK14701 reverse gyrase; Provi 99.9 1.8E-27 4E-32 268.6 18.1 254 37-349 153-467 (1638)
59 TIGR01587 cas3_core CRISPR-ass 99.9 4E-27 8.7E-32 234.8 15.3 291 37-339 3-337 (358)
60 COG1202 Superfamily II helicas 99.9 2.9E-26 6.4E-31 225.0 18.7 302 32-338 231-553 (830)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.9 4.3E-25 9.3E-30 233.3 25.1 198 129-337 169-390 (844)
62 PRK11131 ATP-dependent RNA hel 99.9 3.5E-25 7.5E-30 242.4 23.6 300 32-350 88-423 (1294)
63 PHA02558 uvsW UvsW helicase; P 99.9 8.7E-26 1.9E-30 233.7 16.5 289 33-336 129-450 (501)
64 COG1111 MPH1 ERCC4-like helica 99.9 3.5E-24 7.6E-29 209.0 21.6 108 230-338 365-481 (542)
65 TIGR00595 priA primosomal prot 99.9 2E-24 4.3E-29 222.2 18.7 245 39-340 53-383 (505)
66 TIGR01967 DEAH_box_HrpA ATP-de 99.9 8.7E-24 1.9E-28 232.2 24.2 296 33-346 82-412 (1283)
67 TIGR03158 cas3_cyano CRISPR-as 99.9 3.1E-24 6.7E-29 212.8 17.7 274 36-323 17-357 (357)
68 COG1204 Superfamily II helicas 99.9 1.3E-24 2.9E-29 230.9 15.6 303 21-335 35-405 (766)
69 PRK09401 reverse gyrase; Revie 99.9 5.4E-24 1.2E-28 236.0 16.6 218 44-322 161-428 (1176)
70 PRK04914 ATP-dependent helicas 99.9 5.5E-23 1.2E-27 222.2 19.3 119 216-336 480-601 (956)
71 PRK05580 primosome assembly pr 99.9 4.2E-23 9.2E-28 219.7 17.1 303 34-347 163-558 (679)
72 COG1200 RecG RecG-like helicas 99.9 2.2E-22 4.8E-27 204.3 20.7 240 37-339 340-592 (677)
73 KOG0948|consensus 99.9 8.4E-24 1.8E-28 212.9 9.2 311 22-349 134-551 (1041)
74 KOG0947|consensus 99.9 2.2E-22 4.8E-27 207.3 18.2 310 21-349 301-736 (1248)
75 PRK13766 Hef nuclease; Provisi 99.9 1.4E-21 3E-26 213.5 24.5 112 229-341 363-482 (773)
76 COG1205 Distinct helicase fami 99.9 2E-22 4.3E-27 217.3 17.1 313 19-338 71-422 (851)
77 TIGR00603 rad25 DNA repair hel 99.9 2.3E-22 4.9E-27 210.6 16.2 282 34-340 274-609 (732)
78 PRK12898 secA preprotein trans 99.9 1.5E-21 3.2E-26 202.4 19.6 168 168-341 410-589 (656)
79 KOG0952|consensus 99.9 1.6E-21 3.4E-26 203.2 19.8 308 32-350 125-503 (1230)
80 KOG0349|consensus 99.9 5.1E-22 1.1E-26 189.3 13.2 280 2-337 281-614 (725)
81 COG1197 Mfd Transcription-repa 99.9 3.3E-21 7.1E-26 205.8 20.1 239 36-338 671-913 (1139)
82 TIGR01054 rgy reverse gyrase. 99.9 3.4E-21 7.4E-26 214.0 17.7 210 40-310 156-409 (1171)
83 KOG0329|consensus 99.9 1.8E-22 3.9E-27 180.4 5.1 236 8-341 118-358 (387)
84 PRK09200 preprotein translocas 99.9 1.9E-20 4.2E-25 198.0 19.6 168 168-341 365-544 (790)
85 PRK09694 helicase Cas3; Provis 99.8 1.1E-19 2.4E-24 195.5 22.2 285 35-327 303-664 (878)
86 TIGR00631 uvrb excinuclease AB 99.8 7.7E-20 1.7E-24 192.7 18.7 125 216-341 427-556 (655)
87 TIGR03714 secA2 accessory Sec 99.8 2.2E-19 4.8E-24 188.4 20.2 167 168-341 361-540 (762)
88 COG1061 SSL2 DNA or RNA helica 99.8 2.1E-19 4.6E-24 182.7 18.4 270 33-324 55-375 (442)
89 KOG0354|consensus 99.8 4.2E-19 9.1E-24 183.0 20.6 110 230-341 412-532 (746)
90 COG1198 PriA Primosomal protei 99.8 1.1E-19 2.4E-24 190.1 15.7 308 33-349 217-614 (730)
91 PRK05298 excinuclease ABC subu 99.8 4.6E-19 1E-23 188.1 20.0 122 217-339 432-558 (652)
92 COG4098 comFA Superfamily II D 99.8 5.8E-19 1.3E-23 164.5 17.5 272 33-327 116-403 (441)
93 TIGR00963 secA preprotein tran 99.8 4.4E-19 9.5E-24 185.1 18.7 168 168-341 342-520 (745)
94 KOG0922|consensus 99.8 7.4E-19 1.6E-23 177.1 18.4 235 55-345 133-397 (674)
95 COG1643 HrpA HrpA-like helicas 99.8 4.1E-19 8.8E-24 188.6 17.2 304 26-344 58-393 (845)
96 PRK12906 secA preprotein trans 99.8 9E-19 2E-23 184.2 19.5 167 168-340 377-555 (796)
97 cd00079 HELICc Helicase superf 99.8 7.8E-19 1.7E-23 148.7 14.6 120 215-334 12-131 (131)
98 KOG0951|consensus 99.8 5E-19 1.1E-23 186.9 15.9 310 34-353 326-717 (1674)
99 COG4581 Superfamily II RNA hel 99.8 1E-18 2.2E-23 186.8 16.5 300 22-337 124-536 (1041)
100 PRK12900 secA preprotein trans 99.8 5E-18 1.1E-22 179.8 16.6 168 168-341 535-714 (1025)
101 PF00271 Helicase_C: Helicase 99.8 2.6E-18 5.6E-23 132.2 8.6 78 249-326 1-78 (78)
102 KOG0950|consensus 99.8 9.8E-18 2.1E-22 174.4 14.8 214 129-351 339-624 (1008)
103 COG0556 UvrB Helicase subunit 99.7 1.2E-16 2.7E-21 156.9 18.7 212 119-336 319-555 (663)
104 PRK11448 hsdR type I restricti 99.7 1E-16 2.2E-21 177.4 17.4 94 231-326 698-801 (1123)
105 KOG0923|consensus 99.7 1.3E-16 2.8E-21 159.7 15.9 227 55-338 348-606 (902)
106 COG1203 CRISPR-associated heli 99.7 2.4E-16 5.3E-21 169.7 16.2 297 35-337 216-549 (733)
107 PLN03142 Probable chromatin-re 99.7 2.8E-16 6E-21 171.1 16.2 115 220-334 476-593 (1033)
108 KOG0926|consensus 99.7 1.4E-16 2.9E-21 162.3 11.0 241 52-340 339-706 (1172)
109 KOG0924|consensus 99.7 3.9E-16 8.5E-21 156.6 13.8 201 130-338 467-697 (1042)
110 PRK12904 preprotein translocas 99.6 6.4E-15 1.4E-19 156.0 18.5 167 168-340 367-575 (830)
111 KOG0920|consensus 99.6 2.8E-15 6.1E-20 159.1 14.4 206 129-343 285-549 (924)
112 smart00490 HELICc helicase sup 99.6 1.4E-15 3.1E-20 117.4 9.2 81 246-326 2-82 (82)
113 PRK13104 secA preprotein trans 99.6 2.2E-14 4.7E-19 152.3 17.9 167 168-340 381-589 (896)
114 PRK13107 preprotein translocas 99.6 2.9E-14 6.4E-19 150.9 17.1 167 168-340 386-593 (908)
115 KOG4150|consensus 99.6 1.7E-14 3.8E-19 142.3 12.7 211 131-342 412-646 (1034)
116 KOG0385|consensus 99.5 2E-13 4.3E-18 139.3 11.3 119 216-334 472-593 (971)
117 KOG0953|consensus 99.5 1.1E-12 2.4E-17 129.7 14.7 272 39-350 197-488 (700)
118 PRK14873 primosome assembly pr 99.4 4.7E-12 1E-16 133.8 17.9 241 39-348 217-548 (665)
119 COG1110 Reverse gyrase [DNA re 99.4 6.8E-13 1.5E-17 139.5 11.4 209 42-310 161-417 (1187)
120 KOG0949|consensus 99.4 6.1E-12 1.3E-16 131.4 14.9 77 258-334 965-1044(1330)
121 KOG0925|consensus 99.4 2.2E-11 4.9E-16 118.8 16.3 196 129-339 157-388 (699)
122 PRK12903 secA preprotein trans 99.3 4.2E-11 9E-16 126.2 17.0 166 168-340 363-541 (925)
123 TIGR00348 hsdR type I site-spe 99.3 4.5E-11 9.8E-16 127.8 16.0 94 231-325 514-634 (667)
124 PRK12326 preprotein translocas 99.3 2.6E-10 5.7E-15 118.6 20.5 166 168-340 364-549 (764)
125 KOG0384|consensus 99.2 2.9E-11 6.3E-16 129.2 10.9 111 228-338 696-811 (1373)
126 PRK12899 secA preprotein trans 99.2 4.2E-10 9E-15 120.0 16.8 166 168-340 505-683 (970)
127 PRK12901 secA preprotein trans 99.1 8.2E-10 1.8E-14 118.2 16.1 167 168-340 565-743 (1112)
128 PRK13103 secA preprotein trans 99.1 1.2E-09 2.7E-14 116.3 15.4 166 168-340 386-593 (913)
129 KOG0387|consensus 99.1 2.3E-09 5E-14 110.6 16.0 121 214-334 529-652 (923)
130 COG4096 HsdR Type I site-speci 99.1 2.9E-10 6.3E-15 118.3 8.9 106 218-325 411-525 (875)
131 KOG1123|consensus 99.1 5.4E-10 1.2E-14 109.6 9.9 178 130-325 421-634 (776)
132 CHL00122 secA preprotein trans 99.0 8.2E-09 1.8E-13 109.7 17.1 124 168-297 361-490 (870)
133 KOG0389|consensus 98.9 1E-08 2.2E-13 105.8 13.7 124 216-339 762-889 (941)
134 KOG0390|consensus 98.9 2E-08 4.3E-13 105.8 15.5 81 254-334 618-701 (776)
135 PRK12902 secA preprotein trans 98.9 6.2E-08 1.4E-12 103.0 16.5 125 168-298 376-506 (939)
136 KOG0951|consensus 98.8 7.8E-08 1.7E-12 103.6 15.2 302 34-353 1160-1509(1674)
137 TIGR01407 dinG_rel DnaQ family 98.8 8.9E-08 1.9E-12 105.7 16.2 170 167-337 596-813 (850)
138 TIGR02562 cas3_yersinia CRISPR 98.8 8.1E-08 1.7E-12 103.7 13.8 91 234-327 759-881 (1110)
139 KOG1000|consensus 98.7 1.7E-07 3.7E-12 92.3 13.6 107 229-335 490-598 (689)
140 PF00270 DEAD: DEAD/DEAH box h 98.7 2.8E-09 6.2E-14 94.1 -0.3 142 32-179 13-165 (169)
141 PF06862 DUF1253: Protein of u 98.6 6.4E-06 1.4E-10 82.6 20.3 219 129-349 159-426 (442)
142 PRK07246 bifunctional ATP-depe 98.5 2.5E-06 5.5E-11 93.4 17.0 167 167-337 574-782 (820)
143 cd00268 DEADc DEAD-box helicas 98.5 8.1E-08 1.8E-12 87.7 4.6 150 32-187 35-195 (203)
144 COG4889 Predicted helicase [Ge 98.5 6.5E-08 1.4E-12 100.8 4.1 95 232-326 461-573 (1518)
145 KOG0386|consensus 98.5 2.9E-07 6.4E-12 97.5 8.7 122 215-336 710-834 (1157)
146 PF02399 Herpes_ori_bp: Origin 98.5 1.3E-06 2.8E-11 92.3 13.0 286 35-339 51-389 (824)
147 PRK08074 bifunctional ATP-depe 98.5 4.6E-06 1E-10 92.8 17.9 171 167-337 673-892 (928)
148 PRK11747 dinG ATP-dependent DN 98.4 5.6E-06 1.2E-10 89.3 16.4 167 167-337 457-673 (697)
149 COG1199 DinG Rad3-related DNA 98.3 1.1E-05 2.5E-10 87.0 15.0 165 167-334 404-614 (654)
150 COG0653 SecA Preprotein transl 98.3 5.4E-06 1.2E-10 88.2 11.9 164 169-339 367-546 (822)
151 PF13307 Helicase_C_2: Helicas 98.2 4.3E-06 9.3E-11 73.9 7.9 105 230-336 8-148 (167)
152 TIGR00604 rad3 DNA repair heli 98.2 6.2E-05 1.3E-09 81.8 16.9 168 167-336 442-672 (705)
153 KOG0388|consensus 98.0 2.3E-05 4.9E-10 80.6 9.4 117 215-331 1028-1145(1185)
154 KOG0391|consensus 98.0 5.9E-05 1.3E-09 81.4 12.6 124 214-337 1259-1386(1958)
155 TIGR03117 cas_csf4 CRISPR-asso 98.0 0.0002 4.4E-09 75.6 16.2 157 167-328 372-604 (636)
156 COG0553 HepA Superfamily II DN 98.0 5E-05 1.1E-09 84.6 12.1 120 215-334 692-816 (866)
157 KOG0392|consensus 97.9 4.3E-05 9.3E-10 83.0 9.8 102 230-331 1339-1445(1549)
158 PF07652 Flavi_DEAD: Flaviviru 97.8 4E-06 8.8E-11 70.7 -0.4 119 43-180 14-140 (148)
159 KOG0921|consensus 97.7 4.8E-05 1.1E-09 80.2 5.0 114 230-344 642-780 (1282)
160 smart00487 DEXDc DEAD-like hel 97.7 7.7E-05 1.7E-09 66.8 5.7 146 34-186 25-180 (201)
161 cd00046 DEXDc DEAD-like helica 97.5 6.2E-05 1.3E-09 63.2 2.8 134 37-176 4-144 (144)
162 COG0514 RecQ Superfamily II DN 97.5 0.00022 4.8E-09 74.0 6.6 41 88-128 134-174 (590)
163 KOG0353|consensus 97.4 2E-05 4.4E-10 75.4 -1.4 58 85-144 215-272 (695)
164 KOG1015|consensus 97.3 0.0008 1.7E-08 71.7 7.8 116 219-334 1130-1271(1567)
165 smart00492 HELICc3 helicase su 97.2 0.0044 9.6E-08 52.9 10.6 77 260-336 26-136 (141)
166 PF04851 ResIII: Type III rest 97.2 0.00028 6.1E-09 62.7 3.0 46 33-83 25-70 (184)
167 smart00491 HELICc2 helicase su 97.1 0.0042 9.2E-08 53.1 9.6 92 245-336 5-137 (142)
168 KOG0352|consensus 96.9 0.00019 4.2E-09 70.1 -0.7 43 86-128 142-184 (641)
169 KOG1002|consensus 96.8 0.0075 1.6E-07 60.3 9.7 108 230-337 637-748 (791)
170 TIGR00596 rad1 DNA repair prot 96.6 0.02 4.3E-07 62.6 11.8 53 286-341 431-517 (814)
171 KOG2340|consensus 96.4 0.024 5.3E-07 57.3 10.1 118 231-348 552-678 (698)
172 TIGR00595 priA primosomal prot 96.0 0.031 6.6E-07 58.3 9.4 77 230-307 24-101 (505)
173 PRK05580 primosome assembly pr 96.0 0.04 8.6E-07 59.7 10.3 77 230-307 189-266 (679)
174 PF13871 Helicase_C_4: Helicas 95.9 0.02 4.4E-07 54.2 6.8 57 272-328 52-116 (278)
175 PRK10917 ATP-dependent DNA hel 95.9 0.026 5.6E-07 61.2 8.3 76 230-305 309-389 (681)
176 KOG4439|consensus 95.9 0.066 1.4E-06 56.0 10.5 105 230-334 745-852 (901)
177 PRK14873 primosome assembly pr 95.8 0.037 8.1E-07 59.3 8.7 92 215-307 172-265 (665)
178 KOG0351|consensus 95.7 0.0017 3.7E-08 71.3 -1.4 43 86-128 386-428 (941)
179 COG1110 Reverse gyrase [DNA re 95.4 0.052 1.1E-06 59.2 8.1 74 217-292 113-192 (1187)
180 TIGR00643 recG ATP-dependent D 95.2 0.09 1.9E-06 56.6 9.4 76 230-305 283-363 (630)
181 COG0610 Type I site-specific r 95.1 0.16 3.5E-06 57.0 11.4 48 277-325 589-636 (962)
182 KOG1133|consensus 95.0 0.75 1.6E-05 48.5 14.7 120 214-336 611-778 (821)
183 COG1198 PriA Primosomal protei 95.0 0.059 1.3E-06 58.0 7.1 90 214-304 228-318 (730)
184 PF00176 SNF2_N: SNF2 family N 95.0 0.017 3.7E-07 55.7 2.8 51 131-188 134-184 (299)
185 TIGR00580 mfd transcription-re 94.5 0.21 4.6E-06 55.8 10.3 76 230-305 499-579 (926)
186 KOG0952|consensus 94.5 0.02 4.2E-07 62.4 2.1 196 40-252 950-1174(1230)
187 COG1200 RecG RecG-like helicas 94.5 0.19 4.2E-06 52.8 9.3 76 230-305 310-390 (677)
188 KOG0701|consensus 94.3 0.031 6.7E-07 64.3 3.2 95 232-326 293-399 (1606)
189 PLN00206 DEAD-box ATP-dependen 94.0 0.62 1.3E-05 49.0 12.1 40 62-101 246-286 (518)
190 PRK10689 transcription-repair 93.8 0.18 3.9E-06 57.6 8.0 76 230-305 648-728 (1147)
191 KOG0383|consensus 92.2 0.19 4.1E-06 53.6 4.9 74 220-294 620-696 (696)
192 COG1201 Lhr Lhr-like helicases 92.2 4.9 0.00011 44.1 15.5 136 34-175 99-262 (814)
193 COG1197 Mfd Transcription-repa 91.8 0.85 1.8E-05 51.1 9.4 76 230-305 642-722 (1139)
194 COG0513 SrmB Superfamily II DN 91.8 0.96 2.1E-05 47.4 9.5 68 234-305 102-180 (513)
195 KOG1016|consensus 91.7 0.48 1E-05 50.4 7.0 111 229-339 717-848 (1387)
196 PRK14701 reverse gyrase; Provi 91.5 0.46 9.9E-06 56.2 7.4 61 230-290 121-187 (1638)
197 KOG1513|consensus 91.2 0.2 4.2E-06 53.4 3.6 53 275-327 851-911 (1300)
198 PRK12899 secA preprotein trans 91.0 0.12 2.7E-06 56.6 2.1 110 29-144 103-228 (970)
199 TIGR03817 DECH_helic helicase/ 90.1 0.15 3.3E-06 55.8 1.9 57 36-97 108-169 (742)
200 cd00268 DEADc DEAD-box helicas 89.4 2.7 5.9E-05 37.7 9.3 72 230-305 68-149 (203)
201 TIGR01054 rgy reverse gyrase. 89.4 0.81 1.8E-05 52.6 7.0 61 230-290 120-187 (1171)
202 PF13872 AAA_34: P-loop contai 89.2 0.44 9.5E-06 45.7 3.9 48 133-180 174-224 (303)
203 TIGR03714 secA2 accessory Sec 89.2 0.36 7.8E-06 52.3 3.7 15 130-144 194-208 (762)
204 TIGR00596 rad1 DNA repair prot 89.0 0.71 1.5E-05 50.8 5.9 59 130-193 30-94 (814)
205 PF10593 Z1: Z1 domain; Inter 88.9 2.2 4.9E-05 39.8 8.4 87 255-346 110-201 (239)
206 KOG1001|consensus 88.6 0.17 3.8E-06 54.2 0.9 102 232-333 540-643 (674)
207 KOG0347|consensus 88.6 1 2.3E-05 46.2 6.2 71 230-304 260-345 (731)
208 KOG0331|consensus 88.5 2.5 5.3E-05 43.8 8.9 91 230-324 164-272 (519)
209 TIGR00614 recQ_fam ATP-depende 88.4 1.4 3.1E-05 45.6 7.5 76 230-305 50-133 (470)
210 TIGR01389 recQ ATP-dependent D 87.4 2 4.3E-05 45.9 8.0 60 230-289 52-111 (591)
211 PRK11634 ATP-dependent RNA hel 87.0 2.4 5.1E-05 45.7 8.3 72 230-305 73-155 (629)
212 PRK09200 preprotein translocas 86.3 0.9 2E-05 49.7 4.6 51 10-74 129-180 (790)
213 COG1205 Distinct helicase fami 86.2 0.29 6.2E-06 54.3 0.8 117 21-141 130-265 (851)
214 PRK11192 ATP-dependent RNA hel 85.3 2.9 6.4E-05 42.7 7.8 71 231-305 73-153 (434)
215 PRK11776 ATP-dependent RNA hel 85.1 2 4.4E-05 44.3 6.5 71 231-305 72-153 (460)
216 KOG0345|consensus 84.9 0.49 1.1E-05 47.6 1.7 84 8-101 87-173 (567)
217 PRK04537 ATP-dependent RNA hel 83.5 2.8 6.2E-05 44.6 6.8 71 231-305 84-165 (572)
218 PRK04837 ATP-dependent RNA hel 83.3 4.1 9E-05 41.5 7.8 72 230-305 82-163 (423)
219 PRK10590 ATP-dependent RNA hel 81.8 5.1 0.00011 41.4 7.8 70 232-305 76-155 (456)
220 cd01524 RHOD_Pyr_redox Member 81.2 2.9 6.2E-05 32.2 4.5 37 230-266 50-86 (90)
221 KOG1132|consensus 80.6 54 0.0012 36.2 14.7 78 232-310 562-656 (945)
222 PRK09401 reverse gyrase; Revie 80.5 3.9 8.5E-05 47.2 6.9 76 230-305 122-207 (1176)
223 PRK11057 ATP-dependent DNA hel 79.9 6 0.00013 42.5 7.8 59 231-289 65-123 (607)
224 KOG0339|consensus 79.3 6.2 0.00013 40.4 7.0 70 232-305 297-376 (731)
225 PTZ00110 helicase; Provisional 78.1 6.5 0.00014 41.6 7.3 71 231-305 203-283 (545)
226 cd01523 RHOD_Lact_B Member of 77.0 3.7 8.1E-05 32.2 4.0 37 230-266 60-96 (100)
227 PLN03137 ATP-dependent DNA hel 76.8 7.9 0.00017 44.0 7.6 60 230-289 499-560 (1195)
228 PRK01297 ATP-dependent RNA hel 76.6 8.8 0.00019 39.8 7.7 72 231-305 162-243 (475)
229 PF05127 Helicase_RecD: Helica 75.4 3.4 7.4E-05 36.6 3.6 36 131-178 90-125 (177)
230 PF06733 DEAD_2: DEAD_2; Inte 75.1 1.9 4.2E-05 38.0 2.1 16 131-146 145-160 (174)
231 TIGR00963 secA preprotein tran 74.6 13 0.00029 40.4 8.4 55 230-290 96-154 (745)
232 KOG0338|consensus 74.3 11 0.00023 38.8 7.1 77 230-310 251-338 (691)
233 PRK12898 secA preprotein trans 73.8 24 0.00053 38.0 10.1 68 230-304 143-214 (656)
234 cd01529 4RHOD_Repeats Member o 73.6 6.9 0.00015 30.4 4.7 37 230-266 55-92 (96)
235 smart00450 RHOD Rhodanese Homo 72.9 5.5 0.00012 30.5 4.0 37 230-266 55-92 (100)
236 KOG0391|consensus 71.7 3.3 7.2E-05 46.4 3.1 48 130-184 736-783 (1958)
237 PF05621 TniB: Bacterial TniB 70.1 4.5 9.8E-05 38.9 3.3 41 130-172 144-186 (302)
238 PF00270 DEAD: DEAD/DEAH box h 69.8 26 0.00056 30.0 8.0 71 231-305 44-125 (169)
239 cd01526 RHOD_ThiF Member of th 69.4 7 0.00015 32.1 4.0 38 230-267 71-110 (122)
240 PTZ00424 helicase 45; Provisio 69.3 1.8 3.9E-05 43.7 0.5 40 62-101 146-186 (401)
241 PRK13766 Hef nuclease; Provisi 69.2 14 0.00031 40.8 7.6 75 230-309 57-141 (773)
242 KOG0329|consensus 69.1 16 0.00034 34.2 6.4 94 231-328 110-219 (387)
243 KOG0330|consensus 68.1 25 0.00054 35.0 7.8 83 217-305 117-210 (476)
244 cd01534 4RHOD_Repeat_3 Member 67.2 8.5 0.00019 29.8 3.9 37 230-266 55-91 (95)
245 PRK13107 preprotein translocas 67.2 7.5 0.00016 43.0 4.7 51 10-74 133-183 (908)
246 cd01519 RHOD_HSP67B2 Member of 66.8 13 0.00028 29.3 5.0 37 230-266 65-102 (106)
247 cd01518 RHOD_YceA Member of th 66.7 7.6 0.00017 30.5 3.6 37 230-266 60-97 (101)
248 KOG1513|consensus 66.5 7.2 0.00016 42.1 4.1 44 133-176 407-454 (1300)
249 KOG4439|consensus 66.4 4 8.6E-05 43.4 2.3 47 131-184 463-509 (901)
250 COG3587 Restriction endonuclea 65.2 6.2 0.00013 43.0 3.4 46 280-325 482-527 (985)
251 KOG0335|consensus 65.0 14 0.00031 37.8 5.8 70 231-304 152-231 (482)
252 PRK08727 hypothetical protein; 64.4 6.5 0.00014 36.5 3.2 18 130-147 92-109 (233)
253 smart00488 DEXDc2 DEAD-like he 64.4 3.8 8.3E-05 39.5 1.7 15 131-145 236-250 (289)
254 smart00489 DEXDc3 DEAD-like he 64.4 3.8 8.3E-05 39.5 1.7 15 131-145 236-250 (289)
255 COG1111 MPH1 ERCC4-like helica 64.0 19 0.00042 37.0 6.5 75 230-309 57-141 (542)
256 cd01521 RHOD_PspE2 Member of t 63.3 11 0.00024 30.2 4.0 37 230-266 63-101 (110)
257 PRK12323 DNA polymerase III su 62.9 15 0.00033 39.4 5.8 50 130-185 123-172 (700)
258 cd00032 CASc Caspase, interleu 62.7 98 0.0021 28.8 10.8 99 230-334 8-125 (243)
259 KOG0350|consensus 62.3 22 0.00048 36.5 6.5 86 220-305 204-301 (620)
260 cd01528 RHOD_2 Member of the R 62.1 13 0.00027 29.2 4.1 38 230-267 57-95 (101)
261 cd01533 4RHOD_Repeat_2 Member 61.8 15 0.00032 29.3 4.5 38 230-267 65-104 (109)
262 cd01520 RHOD_YbbB Member of th 61.6 20 0.00042 29.7 5.3 39 229-267 84-123 (128)
263 cd01447 Polysulfide_ST Polysul 61.4 9.5 0.00021 29.8 3.2 37 230-266 60-97 (103)
264 TIGR00696 wecB_tagA_cpsF bacte 61.2 52 0.0011 29.1 8.2 56 230-285 47-104 (177)
265 cd01444 GlpE_ST GlpE sulfurtra 61.2 23 0.0005 27.1 5.4 37 230-266 55-92 (96)
266 PF13173 AAA_14: AAA domain 61.1 6.1 0.00013 32.7 2.1 36 131-173 61-96 (128)
267 cd01527 RHOD_YgaP Member of th 61.1 13 0.00029 28.9 4.0 37 230-266 53-90 (99)
268 PRK14951 DNA polymerase III su 60.3 17 0.00037 38.9 5.8 46 130-181 123-168 (618)
269 PRK13104 secA preprotein trans 60.2 39 0.00085 37.7 8.5 55 230-290 122-180 (896)
270 COG1168 MalY Bifunctional PLP- 59.8 51 0.0011 32.7 8.4 108 217-327 147-267 (388)
271 KOG0298|consensus 59.1 17 0.00036 41.5 5.5 96 230-330 1220-1316(1394)
272 cd01532 4RHOD_Repeat_1 Member 58.2 17 0.00036 28.0 4.1 37 230-266 49-88 (92)
273 PLN02955 8-amino-7-oxononanoat 58.0 42 0.00091 34.8 7.9 47 232-278 393-456 (476)
274 cd01449 TST_Repeat_2 Thiosulfa 57.7 16 0.00034 29.5 4.0 37 230-266 77-114 (118)
275 PRK14958 DNA polymerase III su 57.1 20 0.00042 37.6 5.5 42 130-177 118-159 (509)
276 PRK14956 DNA polymerase III su 57.0 17 0.00037 37.6 4.9 16 130-145 120-135 (484)
277 PRK07003 DNA polymerase III su 56.4 16 0.00035 39.9 4.7 45 130-180 118-162 (830)
278 cd06533 Glyco_transf_WecG_TagA 56.4 71 0.0015 28.0 8.2 69 215-286 33-104 (171)
279 PRK07764 DNA polymerase III su 55.9 20 0.00044 39.8 5.6 44 130-179 119-162 (824)
280 PRK08181 transposase; Validate 55.7 19 0.00042 34.3 4.7 16 129-144 165-180 (269)
281 PF13401 AAA_22: AAA domain; P 55.6 13 0.00027 30.5 3.2 38 132-176 88-125 (131)
282 smart00115 CASc Caspase, inter 55.5 1E+02 0.0022 28.8 9.5 84 230-319 7-106 (241)
283 PF03808 Glyco_tran_WecB: Glyc 55.5 68 0.0015 28.1 8.0 69 215-286 35-106 (172)
284 PF13177 DNA_pol3_delta2: DNA 55.3 24 0.00052 30.7 5.0 51 130-186 101-151 (162)
285 cd01525 RHOD_Kc Member of the 54.0 18 0.00039 28.4 3.7 36 231-266 65-101 (105)
286 KOG0342|consensus 53.9 44 0.00095 34.3 7.0 56 230-289 153-213 (543)
287 PF09848 DUF2075: Uncharacteri 53.6 1.4E+02 0.003 29.6 10.7 16 130-145 82-97 (352)
288 PRK15483 type III restriction- 53.2 14 0.0003 41.5 3.7 45 281-325 501-545 (986)
289 cd00046 DEXDc DEAD-like helica 52.6 50 0.0011 26.4 6.5 57 230-290 29-88 (144)
290 PF00581 Rhodanese: Rhodanese- 52.1 39 0.00085 26.5 5.5 38 229-266 65-108 (113)
291 cd01535 4RHOD_Repeat_4 Member 52.0 38 0.00082 28.8 5.6 37 230-266 48-85 (145)
292 KOG1001|consensus 51.8 23 0.00049 38.4 5.0 52 131-189 254-305 (674)
293 cd01522 RHOD_1 Member of the R 51.7 39 0.00085 27.4 5.4 37 230-266 63-100 (117)
294 PLN03025 replication factor C 51.2 26 0.00056 34.2 5.0 49 131-185 99-147 (319)
295 PLN02160 thiosulfate sulfurtra 51.2 25 0.00054 29.6 4.3 37 230-266 80-117 (136)
296 PF12683 DUF3798: Protein of u 51.1 66 0.0014 30.4 7.3 88 220-313 51-144 (275)
297 PRK14964 DNA polymerase III su 51.0 33 0.00072 35.7 5.9 49 130-184 115-163 (491)
298 COG1204 Superfamily II helicas 51.0 46 0.001 36.8 7.3 75 223-304 68-151 (766)
299 PRK09751 putative ATP-dependen 51.0 36 0.00078 40.4 6.7 72 230-305 36-130 (1490)
300 cd01448 TST_Repeat_1 Thiosulfa 50.6 23 0.00049 28.8 3.9 37 230-266 78-116 (122)
301 PRK14952 DNA polymerase III su 50.2 34 0.00074 36.5 6.0 45 130-180 117-161 (584)
302 PRK07994 DNA polymerase III su 50.1 24 0.00052 38.0 4.9 44 130-179 118-161 (647)
303 PF07517 SecA_DEAD: SecA DEAD- 50.1 3.9 8.5E-05 38.8 -0.9 65 36-144 146-210 (266)
304 COG2812 DnaX DNA polymerase II 49.9 9.5 0.0002 39.7 1.8 18 130-147 118-135 (515)
305 PF12689 Acid_PPase: Acid Phos 49.6 1.8E+02 0.0039 25.5 12.3 134 135-279 35-168 (169)
306 KOG0389|consensus 49.5 70 0.0015 35.0 7.9 64 224-294 442-512 (941)
307 PRK14960 DNA polymerase III su 48.8 35 0.00077 36.8 5.8 45 130-180 117-161 (702)
308 KOG0388|consensus 48.7 17 0.00038 38.9 3.4 56 131-193 695-750 (1185)
309 PHA03333 putative ATPase subun 48.3 91 0.002 33.8 8.6 43 131-180 294-336 (752)
310 TIGR00678 holB DNA polymerase 47.8 42 0.00092 29.6 5.5 40 130-175 95-134 (188)
311 PRK14949 DNA polymerase III su 47.8 32 0.00069 38.5 5.3 46 130-181 118-163 (944)
312 PRK09112 DNA polymerase III su 47.5 33 0.00071 34.1 5.1 43 130-178 140-182 (351)
313 KOG0334|consensus 47.3 50 0.0011 37.0 6.7 56 230-289 437-496 (997)
314 PRK00254 ski2-like helicase; P 47.3 60 0.0013 35.7 7.6 69 230-305 67-144 (720)
315 PRK14959 DNA polymerase III su 47.1 35 0.00075 36.6 5.5 46 130-181 118-163 (624)
316 PRK00162 glpE thiosulfate sulf 47.0 45 0.00098 26.4 5.1 37 230-266 57-94 (108)
317 KOG0346|consensus 46.8 48 0.001 33.7 5.9 64 229-296 91-165 (569)
318 PRK10287 thiosulfate:cyanide s 46.7 37 0.00079 27.1 4.4 37 230-266 59-95 (104)
319 PRK02362 ski2-like helicase; P 46.6 48 0.001 36.5 6.7 69 230-305 66-143 (737)
320 cd00158 RHOD Rhodanese Homolog 46.6 37 0.00079 25.2 4.3 37 230-266 49-86 (89)
321 PRK13103 secA preprotein trans 46.5 74 0.0016 35.6 7.9 67 216-290 110-180 (913)
322 cd03418 GRX_GRXb_1_3_like Glut 46.5 1.1E+02 0.0024 22.0 7.4 53 234-286 2-56 (75)
323 PRK06893 DNA replication initi 46.4 18 0.00039 33.4 2.9 50 129-181 89-139 (229)
324 PRK12904 preprotein translocas 44.7 83 0.0018 35.0 7.9 55 230-290 121-179 (830)
325 PHA03368 DNA packaging termina 43.9 38 0.00082 36.4 5.0 51 131-188 352-402 (738)
326 PRK07940 DNA polymerase III su 43.3 47 0.001 33.5 5.5 50 130-185 116-165 (394)
327 PRK09189 uroporphyrinogen-III 43.2 67 0.0015 29.7 6.3 72 217-289 104-178 (240)
328 PRK06526 transposase; Provisio 43.1 18 0.0004 34.1 2.5 16 129-144 157-172 (254)
329 cd03027 GRX_DEP Glutaredoxin ( 42.6 1.3E+02 0.0028 21.7 7.1 55 233-287 2-57 (73)
330 COG1609 PurR Transcriptional r 42.4 1.3E+02 0.0028 29.5 8.4 42 214-257 221-262 (333)
331 PRK05563 DNA polymerase III su 42.1 48 0.001 35.2 5.6 43 130-178 118-160 (559)
332 COG0607 PspE Rhodanese-related 42.1 28 0.00062 27.3 3.2 37 230-266 60-97 (110)
333 PRK05320 rhodanese superfamily 42.0 35 0.00077 32.2 4.2 38 230-267 174-212 (257)
334 PRK14965 DNA polymerase III su 41.9 48 0.001 35.4 5.6 45 130-180 118-162 (576)
335 TIGR02981 phageshock_pspE phag 41.8 47 0.001 26.3 4.3 37 230-266 57-93 (101)
336 cd00561 CobA_CobO_BtuR ATP:cor 41.7 36 0.00079 29.6 3.9 49 130-181 94-143 (159)
337 PRK14953 DNA polymerase III su 41.1 57 0.0012 34.0 5.9 40 130-175 118-157 (486)
338 KOG0741|consensus 41.1 53 0.0011 34.3 5.4 48 130-177 597-649 (744)
339 PRK14087 dnaA chromosomal repl 41.0 37 0.00081 34.9 4.5 16 129-144 204-219 (450)
340 PRK08451 DNA polymerase III su 41.0 47 0.001 35.0 5.3 42 130-177 116-157 (535)
341 smart00487 DEXDc DEAD-like hel 40.5 1.3E+02 0.0028 25.7 7.6 71 231-305 54-135 (201)
342 cd03031 GRX_GRX_like Glutaredo 40.3 1.3E+02 0.0028 25.7 7.0 45 233-277 1-52 (147)
343 PRK01415 hypothetical protein; 39.9 38 0.00082 31.8 3.9 38 230-267 170-208 (247)
344 cd06281 PBP1_LacI_like_5 Ligan 39.9 52 0.0011 30.6 5.1 38 217-257 164-201 (269)
345 KOG0340|consensus 39.5 47 0.001 32.8 4.5 56 230-289 74-133 (442)
346 PRK10310 PTS system galactitol 39.4 1.5E+02 0.0033 23.0 6.8 62 233-301 4-71 (94)
347 PRK14962 DNA polymerase III su 39.4 42 0.00091 34.8 4.6 15 130-144 116-130 (472)
348 PRK11493 sseA 3-mercaptopyruva 38.9 63 0.0014 30.8 5.5 49 218-266 217-267 (281)
349 TIGR03865 PQQ_CXXCW PQQ-depend 38.9 42 0.00091 29.2 3.9 38 230-267 115-154 (162)
350 TIGR00708 cobA cob(I)alamin ad 38.2 40 0.00088 29.7 3.7 47 130-179 96-142 (173)
351 cd03028 GRX_PICOT_like Glutare 37.8 1.8E+02 0.004 22.1 7.2 46 230-275 6-57 (90)
352 KOG1131|consensus 37.5 2.5E+02 0.0054 29.5 9.3 107 231-338 530-680 (755)
353 TIGR00631 uvrb excinuclease AB 37.5 2.3E+02 0.0049 30.9 9.9 93 230-322 53-176 (655)
354 PRK14955 DNA polymerase III su 37.4 70 0.0015 32.3 5.8 43 130-178 126-168 (397)
355 KOG0343|consensus 37.2 70 0.0015 33.5 5.5 56 229-289 139-198 (758)
356 PF13086 AAA_11: AAA domain; P 37.2 24 0.00052 31.9 2.2 14 131-144 192-205 (236)
357 PRK05986 cob(I)alamin adenolsy 36.9 47 0.001 29.8 3.9 47 130-179 114-160 (191)
358 PRK08691 DNA polymerase III su 36.8 60 0.0013 35.3 5.3 44 130-179 118-161 (709)
359 PRK14961 DNA polymerase III su 36.8 67 0.0014 32.0 5.5 16 130-145 118-133 (363)
360 PRK11131 ATP-dependent RNA hel 36.8 18 0.00039 42.0 1.6 37 60-96 161-197 (1294)
361 PRK13767 ATP-dependent helicas 36.8 72 0.0016 36.0 6.3 72 230-305 83-178 (876)
362 PRK06645 DNA polymerase III su 36.7 63 0.0014 33.9 5.4 16 130-145 127-142 (507)
363 PRK03692 putative UDP-N-acetyl 36.6 2.1E+02 0.0045 26.8 8.3 57 230-286 104-162 (243)
364 cd01530 Cdc25 Cdc25 phosphatas 36.2 49 0.0011 27.1 3.7 37 230-266 67-117 (121)
365 PLN02723 3-mercaptopyruvate su 36.1 77 0.0017 31.0 5.7 49 218-266 255-305 (320)
366 cd06270 PBP1_GalS_like Ligand 35.3 1.1E+02 0.0023 28.3 6.5 38 217-257 165-202 (268)
367 PF05707 Zot: Zonular occluden 35.3 55 0.0012 29.2 4.2 15 131-145 79-93 (193)
368 COG2519 GCD14 tRNA(1-methylade 35.3 75 0.0016 29.8 5.1 37 216-256 177-213 (256)
369 PRK09111 DNA polymerase III su 34.3 75 0.0016 34.1 5.6 41 130-176 131-171 (598)
370 PRK07414 cob(I)yrinic acid a,c 34.3 55 0.0012 29.0 3.8 48 130-180 114-162 (178)
371 PHA02558 uvsW UvsW helicase; P 34.2 21 0.00045 37.3 1.5 35 62-98 201-235 (501)
372 PRK14971 DNA polymerase III su 34.2 74 0.0016 34.2 5.6 46 130-181 120-165 (614)
373 PRK04132 replication factor C 34.1 70 0.0015 35.7 5.4 45 131-181 630-674 (846)
374 COG1922 WecG Teichoic acid bio 34.0 2.9E+02 0.0063 26.0 8.7 65 222-286 99-166 (253)
375 PRK11784 tRNA 2-selenouridine 34.0 2E+02 0.0042 28.6 8.1 48 230-278 87-135 (345)
376 KOG0337|consensus 33.9 1.4E+02 0.0031 30.3 6.9 73 229-307 88-172 (529)
377 PRK10329 glutaredoxin-like pro 33.8 2E+02 0.0044 21.5 7.2 56 233-289 2-58 (81)
378 KOG4166|consensus 33.5 2.6E+02 0.0057 28.4 8.6 99 244-343 288-415 (675)
379 cd01445 TST_Repeats Thiosulfat 33.3 1.1E+02 0.0023 25.8 5.4 48 219-266 82-134 (138)
380 PRK14969 DNA polymerase III su 33.3 75 0.0016 33.5 5.4 16 130-145 118-133 (527)
381 PF02142 MGS: MGS-like domain 33.3 53 0.0011 25.5 3.3 46 245-290 20-69 (95)
382 PF00271 Helicase_C: Helicase 33.2 9 0.00019 28.3 -1.1 36 35-70 6-41 (78)
383 PRK08084 DNA replication initi 33.2 44 0.00095 31.0 3.3 56 130-188 96-156 (235)
384 PRK08058 DNA polymerase III su 33.0 81 0.0018 30.9 5.3 49 130-184 109-157 (329)
385 TIGR00365 monothiol glutaredox 32.7 2.4E+02 0.0052 22.0 8.4 46 230-275 10-61 (97)
386 PRK07471 DNA polymerase III su 31.9 78 0.0017 31.6 5.0 42 130-177 140-181 (365)
387 TIGR00604 rad3 DNA repair heli 31.7 27 0.00059 38.2 1.9 13 133-145 222-234 (705)
388 KOG1133|consensus 31.6 38 0.00081 36.4 2.7 14 132-145 349-362 (821)
389 PRK05642 DNA replication initi 31.4 57 0.0012 30.2 3.7 47 130-179 96-142 (234)
390 PRK00142 putative rhodanese-re 31.3 60 0.0013 31.7 4.0 38 230-267 170-208 (314)
391 COG1199 DinG Rad3-related DNA 31.1 26 0.00056 38.0 1.6 17 131-147 220-236 (654)
392 PRK14948 DNA polymerase III su 31.0 95 0.0021 33.5 5.7 42 130-177 120-161 (620)
393 PRK06647 DNA polymerase III su 30.9 97 0.0021 33.0 5.7 42 130-177 118-159 (563)
394 PRK14957 DNA polymerase III su 30.9 99 0.0021 32.7 5.7 41 130-176 118-158 (546)
395 PRK10014 DNA-binding transcrip 30.4 1.3E+02 0.0028 29.2 6.3 39 217-258 231-269 (342)
396 PRK05707 DNA polymerase III su 30.4 97 0.0021 30.4 5.3 50 130-185 105-154 (328)
397 PF11496 HDA2-3: Class II hist 30.2 4.3E+02 0.0093 25.5 9.6 136 214-349 95-256 (297)
398 PRK12422 chromosomal replicati 30.0 85 0.0018 32.3 5.0 51 129-182 200-250 (445)
399 PRK06871 DNA polymerase III su 29.9 97 0.0021 30.4 5.2 50 130-185 106-155 (325)
400 PRK07133 DNA polymerase III su 29.6 95 0.0021 34.0 5.4 43 130-178 117-159 (725)
401 PRK05896 DNA polymerase III su 29.3 95 0.0021 33.2 5.3 45 130-180 118-162 (605)
402 PF06068 TIP49: TIP49 C-termin 29.3 92 0.002 31.2 4.8 35 132-173 279-313 (398)
403 PRK15483 type III restriction- 29.1 64 0.0014 36.5 4.1 48 121-178 193-240 (986)
404 smart00851 MGS MGS-like domain 29.0 75 0.0016 24.3 3.5 42 248-290 23-64 (90)
405 PRK05298 excinuclease ABC subu 29.0 3.9E+02 0.0085 29.0 10.1 94 230-323 56-180 (652)
406 PF13245 AAA_19: Part of AAA d 28.8 1.2E+02 0.0027 22.4 4.5 46 217-263 28-74 (76)
407 PRK06921 hypothetical protein; 28.7 1.5E+02 0.0032 28.2 6.1 14 129-142 175-188 (266)
408 PRK11054 helD DNA helicase IV; 28.6 8.1E+02 0.018 26.8 14.9 72 232-309 535-611 (684)
409 PF07652 Flavi_DEAD: Flaviviru 28.5 46 0.001 28.5 2.3 37 219-255 21-57 (148)
410 PRK08769 DNA polymerase III su 28.4 1.1E+02 0.0024 30.0 5.2 50 130-185 112-161 (319)
411 PRK11747 dinG ATP-dependent DN 28.4 26 0.00056 38.4 1.0 44 34-77 50-93 (697)
412 PF02572 CobA_CobO_BtuR: ATP:c 28.3 68 0.0015 28.3 3.5 48 130-180 95-142 (172)
413 TIGR02621 cas3_GSU0051 CRISPR- 28.3 92 0.002 34.7 5.1 54 231-288 61-142 (844)
414 PRK08116 hypothetical protein; 27.9 96 0.0021 29.4 4.7 14 129-142 176-189 (268)
415 PF14617 CMS1: U3-containing 9 27.9 1.7E+02 0.0038 27.5 6.3 88 231-321 126-235 (252)
416 PRK05728 DNA polymerase III su 27.8 99 0.0021 26.2 4.3 82 214-308 12-94 (142)
417 PRK06964 DNA polymerase III su 27.7 1.1E+02 0.0024 30.2 5.2 50 130-185 131-180 (342)
418 PRK01172 ski2-like helicase; P 27.6 2E+02 0.0042 31.4 7.6 69 230-305 64-141 (674)
419 COG2109 BtuR ATP:corrinoid ade 27.6 83 0.0018 28.2 3.8 49 130-181 121-170 (198)
420 TIGR02196 GlrX_YruB Glutaredox 27.2 1.4E+02 0.0031 20.9 4.6 53 235-287 3-56 (74)
421 PF04273 DUF442: Putative phos 26.8 3.4E+02 0.0073 21.9 8.3 33 215-250 73-105 (110)
422 KOG0348|consensus 26.8 3.7E+02 0.0079 28.4 8.6 90 230-319 210-315 (708)
423 KOG1180|consensus 26.7 2.3E+02 0.005 30.0 7.2 76 230-308 114-194 (678)
424 COG0156 BioF 7-keto-8-aminopel 26.0 5.5E+02 0.012 25.9 9.8 42 236-277 327-384 (388)
425 TIGR00762 DegV EDD domain prot 25.9 5.7E+02 0.012 24.2 11.1 36 42-77 58-93 (275)
426 PRK05597 molybdopterin biosynt 25.7 96 0.0021 30.8 4.4 37 230-266 313-350 (355)
427 KOG0989|consensus 25.7 86 0.0019 30.4 3.8 39 130-174 128-167 (346)
428 TIGR02881 spore_V_K stage V sp 25.6 94 0.002 29.2 4.2 14 132-145 106-119 (261)
429 PRK14954 DNA polymerase III su 25.0 1.5E+02 0.0032 32.0 5.8 41 130-176 126-166 (620)
430 PRK08903 DnaA regulatory inact 25.0 1E+02 0.0022 28.1 4.2 43 131-178 90-133 (227)
431 PRK14950 DNA polymerase III su 24.9 1.3E+02 0.0028 32.2 5.5 41 130-176 119-159 (585)
432 PRK07246 bifunctional ATP-depe 24.8 36 0.00079 38.0 1.3 43 33-77 264-306 (820)
433 PHA00012 I assembly protein 24.2 1E+02 0.0022 30.3 4.1 30 39-71 7-36 (361)
434 PRK12723 flagellar biosynthesi 24.0 1.6E+02 0.0035 29.7 5.6 59 127-189 250-310 (388)
435 PF12846 AAA_10: AAA-like doma 24.0 67 0.0014 30.4 2.9 16 131-146 220-235 (304)
436 PRK06090 DNA polymerase III su 23.9 1.4E+02 0.0031 29.1 5.2 51 130-186 107-157 (319)
437 KOG0385|consensus 23.9 3.6E+02 0.0078 29.8 8.2 65 222-288 208-274 (971)
438 PF01286 XPA_N: XPA protein N- 23.7 19 0.00042 22.4 -0.6 26 375-409 8-33 (34)
439 COG1373 Predicted ATPase (AAA+ 23.7 1.2E+02 0.0026 30.6 4.8 51 132-191 95-145 (398)
440 TIGR03167 tRNA_sel_U_synt tRNA 23.5 2.1E+02 0.0046 27.9 6.2 48 230-278 73-121 (311)
441 PHA02544 44 clamp loader, smal 23.3 1.7E+02 0.0037 28.2 5.6 13 131-143 100-112 (316)
442 PRK08762 molybdopterin biosynt 23.2 1.7E+02 0.0037 29.3 5.7 37 230-266 56-93 (376)
443 PF05872 DUF853: Bacterial pro 23.1 99 0.0021 31.8 3.8 45 131-176 254-300 (502)
444 TIGR02397 dnaX_nterm DNA polym 22.8 1.8E+02 0.0039 28.5 5.8 15 130-144 116-130 (355)
445 cd01422 MGS Methylglyoxal synt 22.8 1.1E+02 0.0024 24.9 3.5 43 247-290 36-79 (115)
446 PRK00440 rfc replication facto 22.8 1.7E+02 0.0036 28.1 5.5 14 131-144 102-115 (319)
447 PRK07276 DNA polymerase III su 22.8 1.6E+02 0.0034 28.4 5.1 50 130-185 103-152 (290)
448 PF04364 DNA_pol3_chi: DNA pol 22.6 1.7E+02 0.0037 24.6 4.7 82 217-309 15-96 (137)
449 COG0826 Collagenase and relate 22.4 2.2E+02 0.0047 28.3 6.1 27 377-410 178-204 (347)
450 PRK14963 DNA polymerase III su 22.4 1.2E+02 0.0026 31.8 4.5 15 130-144 115-129 (504)
451 KOG0392|consensus 22.3 96 0.0021 35.8 3.9 46 131-183 1100-1145(1549)
452 cd06296 PBP1_CatR_like Ligand- 22.3 1.9E+02 0.004 26.6 5.6 39 216-257 165-203 (270)
453 PRK07411 hypothetical protein; 22.2 1.2E+02 0.0026 30.6 4.3 38 230-267 341-378 (390)
454 PRK14086 dnaA chromosomal repl 22.2 1E+02 0.0022 33.1 3.9 17 129-145 375-391 (617)
455 PRK06305 DNA polymerase III su 22.1 1.6E+02 0.0034 30.4 5.2 40 130-175 120-159 (451)
456 cd05567 PTS_IIB_mannitol PTS_I 22.0 3.5E+02 0.0077 20.4 7.5 76 232-318 1-83 (87)
457 PF10657 RC-P840_PscD: Photosy 21.7 1.4E+02 0.0031 24.4 3.8 38 271-308 64-107 (144)
458 PRK07993 DNA polymerase III su 21.6 1.8E+02 0.0039 28.7 5.4 51 130-186 107-157 (334)
459 COG0052 RpsB Ribosomal protein 21.6 1.5E+02 0.0033 27.7 4.4 51 203-254 36-86 (252)
460 PRK12402 replication factor C 21.5 1.3E+02 0.0028 29.2 4.4 14 131-144 125-138 (337)
461 COG0634 Hpt Hypoxanthine-guani 21.5 37 0.00081 29.9 0.5 83 214-297 18-109 (178)
462 PHA03372 DNA packaging termina 21.5 1.3E+02 0.0027 32.3 4.3 52 130-188 298-349 (668)
463 PRK10638 glutaredoxin 3; Provi 21.3 3.5E+02 0.0075 20.0 7.0 55 233-287 3-58 (83)
464 cd02066 GRX_family Glutaredoxi 21.2 2.8E+02 0.0061 19.0 7.1 53 234-286 2-55 (72)
465 KOG2036|consensus 21.2 1.9E+02 0.0041 31.4 5.5 44 282-326 547-592 (1011)
466 PRK00149 dnaA chromosomal repl 21.1 1E+02 0.0023 31.6 3.8 17 128-144 208-224 (450)
467 PRK07399 DNA polymerase III su 21.0 1.9E+02 0.0041 28.2 5.4 48 130-184 123-170 (314)
468 cd06293 PBP1_LacI_like_11 Liga 20.7 2.6E+02 0.0057 25.6 6.3 38 217-257 165-202 (269)
469 COG2255 RuvB Holliday junction 20.7 49 0.0011 31.7 1.1 27 119-145 91-117 (332)
470 PRK14970 DNA polymerase III su 20.6 1.5E+02 0.0033 29.3 4.8 41 130-176 107-147 (367)
471 PRK09281 F0F1 ATP synthase sub 20.4 8.8E+02 0.019 25.4 10.3 51 231-281 218-279 (502)
472 PRK09860 putative alcohol dehy 20.3 5.6E+02 0.012 25.6 8.8 72 215-288 17-95 (383)
473 COG0470 HolB ATPase involved i 20.3 1.3E+02 0.0029 28.8 4.2 45 130-180 108-152 (325)
474 PHA00350 putative assembly pro 20.1 1.4E+02 0.003 30.2 4.3 13 132-144 82-94 (399)
475 KOG3201|consensus 20.1 4.7E+02 0.01 23.0 6.8 65 215-280 117-182 (201)
No 1
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-66 Score=523.67 Aligned_cols=357 Identities=39% Similarity=0.611 Sum_probs=319.5
Q ss_pred HHHHH-HHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhh
Q psy10478 12 IQEHS-KTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIA 90 (451)
Q Consensus 12 i~~~~-~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~ 90 (451)
++.|+ ..|-+|+..+.. .++.|++++|..+..|+..++..+..|.+++||.+||++.++. +.+.+...
T Consensus 62 VVSPLiSLM~DQV~~l~~------~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~-f~~~L~~~---- 130 (590)
T COG0514 62 VVSPLISLMKDQVDQLEA------AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPR-FLELLKRL---- 130 (590)
T ss_pred EECchHHHHHHHHHHHHH------cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChH-HHHHHHhC----
Confidence 34454 557778766544 3577999999999999999999999999999999999999987 88877654
Q ss_pred cccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEE
Q psy10478 91 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPIL 170 (451)
Q Consensus 91 ~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v 170 (451)
++.++|||||||+++|||+|||+|.++..++..+|++|++
T Consensus 131 ----------------------------------------~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~ 170 (590)
T COG0514 131 ----------------------------------------PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVL 170 (590)
T ss_pred ----------------------------------------CCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEE
Confidence 7999999999999999999999999999999999999999
Q ss_pred EEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHH
Q psy10478 171 AVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDV 250 (451)
Q Consensus 171 ~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~ 250 (451)
++|||+++.+.++|.+.|++..+.++..+++|||++|.+..+.. ....+..+........+++||||.|++.++.++++
T Consensus 171 AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~-~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~ 249 (590)
T COG0514 171 ALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGE-PSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEW 249 (590)
T ss_pred EEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhccc-HHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHH
Confidence 99999999999999999999999999999999999999987652 22333322222233677899999999999999999
Q ss_pred HHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcE
Q psy10478 251 LSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSV 330 (451)
Q Consensus 251 L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 330 (451)
|...|+.+..|||||+.++|..+.++|.+++++|+|||.+||||||.|||++||||++|.|+++|+|++|||||+|.++.
T Consensus 250 L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ 329 (590)
T COG0514 250 LRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAE 329 (590)
T ss_pred HHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHhhccccHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCCc
Q psy10478 331 CYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNE 410 (451)
Q Consensus 331 ~i~l~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~~~~~~~~~~Cd~C~~~~ 410 (451)
|+++|++.|....+.+++.+.++.+.++.....+..|..||++..|||..+++|||+. .... |.+ ||||..+.
T Consensus 330 aill~~~~D~~~~~~~i~~~~~~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~yfge~-~~~~-----c~~-c~~c~~~~ 402 (590)
T COG0514 330 AILLYSPEDIRWQRYLIEQSKPDEEQKQIELAKLRQMIAYCETQTCRRLVLLKYFGED-EPEP-----CGN-CDNCLDTP 402 (590)
T ss_pred EEEeeccccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcccccchHHHHHHhcCcc-cccc-----ccC-CCcccCcc
Confidence 9999999999999999988777777788888899999999998889999999999997 3222 444 99998886
Q ss_pred cccccccCCCCcccccccccccccccCccHHHHHhccccc
Q psy10478 411 MLELEQVPRGGRMVVENSEVWMSTEARPGREAFEFLPHLK 450 (451)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (451)
+ ..|.+.+|+++++|++
T Consensus 403 ------------------~-----~~d~t~~a~~~ls~~~ 419 (590)
T COG0514 403 ------------------K-----QFDGTIEAQKVLSCIY 419 (590)
T ss_pred ------------------h-----hcchHHHHHHHHHhHh
Confidence 2 7899999999999985
No 2
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.6e-61 Score=514.53 Aligned_cols=366 Identities=32% Similarity=0.546 Sum_probs=306.9
Q ss_pred HHHHHHHHH-HHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhh
Q psy10478 12 IQEHSKTMM-KRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVL 88 (451)
Q Consensus 12 i~~~~~~~~-~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~ 88 (451)
++.|+.+++ +|+..+.. .++.+++++|+.+..+...++..+.. |+++|||+|||++.....+...+..+
T Consensus 505 VISPLiSLmqDQV~~L~~------~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L-- 576 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ------ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL-- 576 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh------CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh--
Confidence 344555554 45555443 35678889999998887777776655 88999999999998654234444333
Q ss_pred hhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCC
Q psy10478 89 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP 168 (451)
Q Consensus 89 ~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~ 168 (451)
.....+.+|||||||++++||++||+.|..+..++..+++.|
T Consensus 577 --------------------------------------~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vP 618 (1195)
T PLN03137 577 --------------------------------------NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIP 618 (1195)
T ss_pred --------------------------------------hhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCC
Confidence 111358999999999999999999999999998999999999
Q ss_pred EEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHH
Q psy10478 169 ILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVC 248 (451)
Q Consensus 169 ~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~ 248 (451)
++++|||+++.+.+++.+.+++.++.++..++++||+.|.+..+.......+..++.... .+.++||||+|++.++.++
T Consensus 619 ilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~-~~esgIIYC~SRke~E~LA 697 (1195)
T PLN03137 619 VLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENH-FDECGIIYCLSRMDCEKVA 697 (1195)
T ss_pred eEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHHhcc-cCCCceeEeCchhHHHHHH
Confidence 999999999999999999999999999999999999999988766555566777775432 4678999999999999999
Q ss_pred HHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCC
Q psy10478 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLS 328 (451)
Q Consensus 249 ~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~ 328 (451)
..|.+.|+.+..|||+|++++|..+++.|.+|+++|||||++|+||||+|+|++||||++|+|++.|+||+|||||+|.+
T Consensus 698 e~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~ 777 (1195)
T PLN03137 698 ERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR 777 (1195)
T ss_pred HHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecccHHHHhhhhcCCCCCh--------------HHHHHHHHHHHHHHHHhhcc-ccHHHHHHhhcCCCCcccc
Q psy10478 329 SVCYTFYKTADFTKNNMIFQPNLNDS--------------EIQEHSKTMMKRVEKYLELR-TCRRKYLLNHFKGSSVTVA 393 (451)
Q Consensus 329 g~~i~l~~~~d~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~Crr~~l~~~f~~~~~~~~ 393 (451)
|.|++||+..|...++.++....... ...+...+.+..|..||++. .|||..++.|||+.+....
T Consensus 778 g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~~~ 857 (1195)
T PLN03137 778 SSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDSTN 857 (1195)
T ss_pred ceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCccC
Confidence 99999999999999888876432111 12344567889999999875 9999999999999864433
Q ss_pred cCCCCCCCCCCCCCCCccccccccCCCCcccccccccccccccCccHHHHHhccccc
Q psy10478 394 ESQVPPDKCCDNCRHNEMLELEQVPRGGRMVVENSEVWMSTEARPGREAFEFLPHLK 450 (451)
Q Consensus 394 ~~~~~~~~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (451)
|++.||||..+. ... ..|++.+|+++|+||+
T Consensus 858 -----C~~~CDnC~~~~----------------~~~-----~~D~T~~Aq~~ls~V~ 888 (1195)
T PLN03137 858 -----CKKTCDNCSSSK----------------SLI-----DKDVTEIARQLVELVK 888 (1195)
T ss_pred -----CCCCCCCCCCCC----------------ccc-----ccccHHHHHHHHHHHH
Confidence 766799998875 111 3699999999999985
No 3
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-56 Score=460.77 Aligned_cols=375 Identities=38% Similarity=0.622 Sum_probs=305.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhc
Q psy10478 12 IQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAI 91 (451)
Q Consensus 12 i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~ 91 (451)
++.|+.+++.|+...+. ..++.+++++|+.+..+...++..+..+.++|+|+|||++.....+...+...
T Consensus 56 Vi~P~~~L~~dq~~~l~-----~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~----- 125 (470)
T TIGR00614 56 VISPLISLMEDQVLQLK-----ASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEER----- 125 (470)
T ss_pred EEecHHHHHHHHHHHHH-----HcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhc-----
Confidence 34455565554433222 23566888899988887777777888899999999999997654333433221
Q ss_pred ccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEE
Q psy10478 92 DEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILA 171 (451)
Q Consensus 92 de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~ 171 (451)
.++++|||||||++++||++||+.|..+..++..+|+.|+++
T Consensus 126 --------------------------------------~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~ 167 (470)
T TIGR00614 126 --------------------------------------KGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMA 167 (470)
T ss_pred --------------------------------------CCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEE
Confidence 479999999999999999999999999999988899999999
Q ss_pred EEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHH
Q psy10478 172 VTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVL 251 (451)
Q Consensus 172 lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L 251 (451)
+|||+++.+..++.+.+++..+.++..++++|++.+.+..........+..++.... .+.++||||+|++.++.++..|
T Consensus 168 lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~-~~~~~IIF~~s~~~~e~la~~L 246 (470)
T TIGR00614 168 LTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEF-KGKSGIIYCPSRKKSEQVTASL 246 (470)
T ss_pred EecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhc-CCCceEEEECcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888776556667777765432 5667899999999999999999
Q ss_pred HHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEE
Q psy10478 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVC 331 (451)
Q Consensus 252 ~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 331 (451)
.+.|+.+..|||+|++++|..+++.|++|+++|||||+++++|||+|+|++|||+++|+|.+.|+||+|||||+|.+|.|
T Consensus 247 ~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~ 326 (470)
T TIGR00614 247 QNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSEC 326 (470)
T ss_pred HhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHhhccccHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCCcc
Q psy10478 332 YTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEM 411 (451)
Q Consensus 332 i~l~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~~~~~~~~~~Cd~C~~~~~ 411 (451)
+++|++.|...++.++... ++...+......+..|..|+++..|||..+++|||+......-....|..+||||.....
T Consensus 327 ~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~crr~~l~~~f~~~~~~~~~~~~~~~~~C~~C~~~~~ 405 (470)
T TIGR00614 327 HLFYAPADINRLRRLLMEE-PDGQQRTYKLKLYEMMEYCLNSSTCRRLILLSHFGEKQLNKSFGIMGTEKCCDNCCKRLD 405 (470)
T ss_pred EEEechhHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHhccccCHHHHHHHHcCCcccccccccccCCCCCCCCCCccc
Confidence 9999999999998887763 333444555667888989999999999999999999654211001124556777764430
Q ss_pred ccccccCCCCcccccccccccccccCccHHHHHhccccc
Q psy10478 412 LELEQVPRGGRMVVENSEVWMSTEARPGREAFEFLPHLK 450 (451)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (451)
..... + +.+ ..|++.+|+++|+|++
T Consensus 406 ~~~~~--------~-~~~-----~~~~~~~~~~~~~~~~ 430 (470)
T TIGR00614 406 YKTKD--------V-TDK-----VYDFGPQAQKALSAVG 430 (470)
T ss_pred cccCC--------C-Chh-----HhhHHHHHHHHHHHHH
Confidence 00000 0 123 6799999999999874
No 4
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.3e-56 Score=471.42 Aligned_cols=337 Identities=37% Similarity=0.569 Sum_probs=300.1
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR 115 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~ 115 (451)
++.+++++|+.+..+...++..+..|.++|+|+|||++.+.. +...+..
T Consensus 77 gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~-~~~~l~~------------------------------ 125 (591)
T TIGR01389 77 GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDY-FLNMLQR------------------------------ 125 (591)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChH-HHHHHhc------------------------------
Confidence 466888999999988888888888999999999999998755 5554432
Q ss_pred cCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeE
Q psy10478 116 LPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNI 195 (451)
Q Consensus 116 ~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~ 195 (451)
.++++|||||||++++||++|||.|..+..++..+|+.|++++|||+++.+..++...+++.++..
T Consensus 126 --------------~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~ 191 (591)
T TIGR01389 126 --------------IPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANE 191 (591)
T ss_pred --------------CCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCe
Confidence 379999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHH
Q psy10478 196 INTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275 (451)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~ 275 (451)
+..++++|++.+.+.... .....+..++... .+.++||||+|++.++.+++.|...|+.+..|||+|+.++|..+++
T Consensus 192 ~~~~~~r~nl~~~v~~~~-~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~ 268 (591)
T TIGR01389 192 FITSFDRPNLRFSVVKKN-NKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQE 268 (591)
T ss_pred EecCCCCCCcEEEEEeCC-CHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHH
Confidence 888999999999886654 4456677777654 5789999999999999999999999999999999999999999999
Q ss_pred HhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhhcCCCCChH
Q psy10478 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSE 355 (451)
Q Consensus 276 ~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~~~~~~~~~ 355 (451)
.|.+|+++|||||+++++|||+|+|++|||+++|.|.++|+|++|||||+|.+|.|+++|++.|...++.++....+...
T Consensus 269 ~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~ 348 (591)
T TIGR01389 269 DFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSEADDD 348 (591)
T ss_pred HHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887666666
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCCccccccccCCCCcccccccccccccc
Q psy10478 356 IQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLELEQVPRGGRMVVENSEVWMSTE 435 (451)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~~~~~~~~~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
.+......+..|..||++..|||.++++|||+.... +|+.||||..+. + .
T Consensus 349 ~~~~~~~~l~~~~~~~~~~~c~r~~~~~~f~~~~~~-------~c~~cd~c~~~~------------------~-----~ 398 (591)
T TIGR01389 349 YKQIEREKLRAMIAYCETQTCRRAYILRYFGENEVE-------PCGNCDNCLDPP------------------K-----S 398 (591)
T ss_pred HHHHHHHHHHHHHHHHcccccHhHHHHHhcCCCCCC-------CCCCCCCCCCCC------------------c-----e
Confidence 666667788999999999999999999999986421 456799998764 3 5
Q ss_pred cCccHHHHHhccccc
Q psy10478 436 ARPGREAFEFLPHLK 450 (451)
Q Consensus 436 ~~~~~~~~~~~~~~~ 450 (451)
.|.+.+|++++++|.
T Consensus 399 ~~~t~~~~~~~~~~~ 413 (591)
T TIGR01389 399 YDATVEAQKALSCVY 413 (591)
T ss_pred eehHHHHHHHHHHHH
Confidence 689999999999874
No 5
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.2e-56 Score=468.45 Aligned_cols=354 Identities=33% Similarity=0.534 Sum_probs=299.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcc
Q psy10478 13 QEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAID 92 (451)
Q Consensus 13 ~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~d 92 (451)
+.|+.+++.|+...+.. .++.+.+++|+.+..+.....+.+..|.++++|+||+++.... +...+..
T Consensus 71 isPl~sL~~dqv~~l~~-----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~-~~~~l~~------- 137 (607)
T PRK11057 71 VSPLISLMKDQVDQLLA-----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDN-FLEHLAH------- 137 (607)
T ss_pred EecHHHHHHHHHHHHHH-----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChH-HHHHHhh-------
Confidence 34555555544332221 2466778888888887777777788899999999999998654 4443322
Q ss_pred cceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEE
Q psy10478 93 EAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAV 172 (451)
Q Consensus 93 e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~l 172 (451)
.++++|||||||++++||++|++.|..+..++..+|+.|++++
T Consensus 138 -------------------------------------~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~l 180 (607)
T PRK11057 138 -------------------------------------WNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL 180 (607)
T ss_pred -------------------------------------CCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEE
Confidence 2699999999999999999999999999999988999999999
Q ss_pred EeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHH
Q psy10478 173 TATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLS 252 (451)
Q Consensus 173 SAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~ 252 (451)
|||+++.+..++...+++.+|.+...++++|++.+.+.... .....+..++... .+.++||||+|++.++.+++.|.
T Consensus 181 TAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~-~~~~~l~~~l~~~--~~~~~IIFc~tr~~~e~la~~L~ 257 (607)
T PRK11057 181 TATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF-KPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQ 257 (607)
T ss_pred ecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc-chHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHH
Confidence 99999999999999999999998888999999988876543 3345566666544 67899999999999999999999
Q ss_pred HCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEE
Q psy10478 253 RNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCY 332 (451)
Q Consensus 253 ~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i 332 (451)
+.|+.+..|||+|++++|.++++.|++|+++|||||+++++|||+|+|++|||||+|.|.++|+||+|||||+|.+|.|+
T Consensus 258 ~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 258 SRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred hCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHhhccccHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCCccc
Q psy10478 333 TFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEML 412 (451)
Q Consensus 333 ~l~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~~~~~~~~~~Cd~C~~~~~~ 412 (451)
+||++.|...++.++.... ....+......+..|..||++..|||+.+++|||+.... +|++||||.++.
T Consensus 338 ll~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~Crr~~~l~yf~e~~~~-------~c~~cd~c~~~~-- 407 (607)
T PRK11057 338 LFYDPADMAWLRRCLEEKP-AGQQQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQE-------PCGNCDICLDPP-- 407 (607)
T ss_pred EEeCHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhCCCCCC-------CCCCCCCCCCcc--
Confidence 9999999999888887643 223334455678899999999999999999999997532 566899998764
Q ss_pred cccccCCCCcccccccccccccccCccHHHHHhccccc
Q psy10478 413 ELEQVPRGGRMVVENSEVWMSTEARPGREAFEFLPHLK 450 (451)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (451)
+ ..|.+.+|+++|+|++
T Consensus 408 ----------------~-----~~~~~~~~~~~~~~~~ 424 (607)
T PRK11057 408 ----------------K-----QYDGLEDAQKALSCIY 424 (607)
T ss_pred ----------------c-----ccccHHHHHHHHHHHH
Confidence 2 5688899999999874
No 6
>KOG0351|consensus
Probab=100.00 E-value=1.4e-56 Score=476.99 Aligned_cols=347 Identities=39% Similarity=0.620 Sum_probs=304.0
Q ss_pred HHHHH-HHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCC--CeeEEEeCccccccchhhHhhhhhhhh
Q psy10478 12 IQEHS-KTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDN--CRQVVYMTPEYVTNNTSFLSRIPRIVL 88 (451)
Q Consensus 12 i~~~~-~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~--~~~vl~~tPe~l~~~~~~~~~l~~~~~ 88 (451)
.+.|+ ..|.+|+.++.+ .+|.|.+++|+.+..++..+++.+.+| .++|+|+|||++.....+...+..+
T Consensus 309 VISPL~SLm~DQv~~L~~------~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L-- 380 (941)
T KOG0351|consen 309 VISPLISLMQDQVTHLSK------KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADL-- 380 (941)
T ss_pred EeccHHHHHHHHHHhhhh------cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhc--
Confidence 34555 446677666533 466799999999999999999999999 9999999999999877566656554
Q ss_pred hhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCC
Q psy10478 89 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP 168 (451)
Q Consensus 89 ~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~ 168 (451)
...+.+.++|||||||+++|||+|||+|+++..++..++.+|
T Consensus 381 --------------------------------------~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP 422 (941)
T KOG0351|consen 381 --------------------------------------YARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVP 422 (941)
T ss_pred --------------------------------------cCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCC
Confidence 111348999999999999999999999999999999999999
Q ss_pred EEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecc-hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHH
Q psy10478 169 ILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQ-DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKV 247 (451)
Q Consensus 169 ~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l 247 (451)
++++|||+++.+.+++.+.|++.++.++..+++|+|++|.|..+. ......+...++.. .+...+||||.++..|+.+
T Consensus 423 ~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~-~~~~s~IIYC~sr~~ce~v 501 (941)
T KOG0351|consen 423 FIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLR-HPDQSGIIYCLSRKECEQV 501 (941)
T ss_pred eEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhc-CCCCCeEEEeCCcchHHHH
Confidence 999999999999999999999999999999999999999999887 33344444444443 3889999999999999999
Q ss_pred HHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCC
Q psy10478 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 248 ~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 327 (451)
+..|++.|+.+..||+||++.+|..+...|..++++|+|||-+||||||.|||+.||||++|++++.|+|.+|||||+|.
T Consensus 502 s~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~ 581 (941)
T KOG0351|consen 502 SAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGL 581 (941)
T ss_pred HHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeecccHHHHhhhhcCCCCChHHHH-HHHHHHHHHHHHh-hccccHHHHHHhhcCCCCcccccCCCCCC--CCC
Q psy10478 328 SSVCYTFYKTADFTKNNMIFQPNLNDSEIQE-HSKTMMKRVEKYL-ELRTCRRKYLLNHFKGSSVTVAESQVPPD--KCC 403 (451)
Q Consensus 328 ~g~~i~l~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~Crr~~l~~~f~~~~~~~~~~~~~~~--~~C 403 (451)
++.|++||...|...++.++..........+ .....+.++..|| +.+.|||+.+++|||+.+.... |. .+|
T Consensus 582 ~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~f~~~~-----c~~~k~c 656 (941)
T KOG0351|consen 582 PSSCVLLYGYADISELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEYFGEEFDSKH-----CKKHKTC 656 (941)
T ss_pred cceeEEecchhHHHHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhHHHHHHhcccccchhh-----ccCCchH
Confidence 9999999999999999999888622223333 4577889999999 5999999999999999977655 55 689
Q ss_pred CCCCCCc
Q psy10478 404 DNCRHNE 410 (451)
Q Consensus 404 d~C~~~~ 410 (451)
|||....
T Consensus 657 d~C~~~~ 663 (941)
T KOG0351|consen 657 DNCRESL 663 (941)
T ss_pred HHhhccc
Confidence 9998775
No 7
>KOG0352|consensus
Probab=100.00 E-value=2.4e-56 Score=421.53 Aligned_cols=340 Identities=34% Similarity=0.570 Sum_probs=290.5
Q ss_pred HHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc--CCCeeEEEeCccccccchhhHhhhhhhhhhhcccc
Q psy10478 17 KTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC--DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEA 94 (451)
Q Consensus 17 ~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~--~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~ 94 (451)
..+.+|+..+..|+. .+..++|.++..|+..++..++ ...+++||.|||...+.. |-..|..+
T Consensus 72 ALIkDQiDHL~~LKV------p~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~-FQ~lLn~L-------- 136 (641)
T KOG0352|consen 72 ALIKDQIDHLKRLKV------PCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDG-FQKLLNGL-------- 136 (641)
T ss_pred HHHHHHHHHHHhcCC------chhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhh-HHHHHHHH--------
Confidence 445577777777755 4888999999999888877655 456789999999999887 77877766
Q ss_pred eeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEe
Q psy10478 95 HCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTA 174 (451)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSA 174 (451)
| .+ ..+.++|+|||||+++|||||||+|..|+.++..++++|.+++||
T Consensus 137 ~-------------------------------~r-~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTA 184 (641)
T KOG0352|consen 137 A-------------------------------NR-DVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTA 184 (641)
T ss_pred h-------------------------------hh-ceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeec
Confidence 1 11 469999999999999999999999999999999999999999999
Q ss_pred eCChHHHHHHHHhcCCCCCeE-EecCCCCCceEEEEEecc--hhHHHHHHHHHhhc-----------cCCCCcEEEEcCC
Q psy10478 175 TATPVVIDDICTSLMLRDPNI-INTGFDRPNLYLAASVKQ--DDIMADLRKLTNFE-----------NQFEGSTIIYCPT 240 (451)
Q Consensus 175 T~~~~~~~~i~~~l~l~~~~~-~~~~~~~~~l~~~~~~~~--~~~~~~L~~~l~~~-----------~~~~~~~iVF~~t 240 (451)
|+++.+.+++...|.+.+|+. +..+..|.|++|.+..+. .+-+..|.++-... ....+-.||||.|
T Consensus 185 TA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRT 264 (641)
T KOG0352|consen 185 TANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRT 264 (641)
T ss_pred ccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEecc
Confidence 999999999999999998865 567788999999877654 33444555543322 1134568999999
Q ss_pred hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhc
Q psy10478 241 KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIG 320 (451)
Q Consensus 241 ~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~G 320 (451)
+++||+++-.|...|+++..||+|+...||.++.++|.+++++||+||..||||+|.|+|++|||+++|.+++.|+|+.|
T Consensus 265 R~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESG 344 (641)
T KOG0352|consen 265 RNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESG 344 (641)
T ss_pred HHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEEeecccHHHHhhhhcCCCC------ChH-HHHHHHHHHHHHHHHhhccccHHHHHHhhcCCCCcccc
Q psy10478 321 RAGRDGLSSVCYTFYKTADFTKNNMIFQPNLN------DSE-IQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVA 393 (451)
Q Consensus 321 RagR~g~~g~~i~l~~~~d~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~ 393 (451)
||||+|.++.|-++|+.+|...+++++..+.. +.+ ..+.....+..|..||+...||+..+.+|||+....
T Consensus 345 RAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklrek~~ke~~~k~~I~~F~k~~eFCE~~~CRH~~ia~fFgD~~p~-- 422 (641)
T KOG0352|consen 345 RAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLREKAKKEMQIKSIITGFAKMLEFCESARCRHVSIASFFDDTECP-- 422 (641)
T ss_pred ccccCCCccceeeeecccchHHHHHHHhhHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHcccchHHHHHhcCCCCCC--
Confidence 99999999999999999999999998877532 111 123344457899999999999999999999998653
Q ss_pred cCCCCCCCCCCCCCCCc
Q psy10478 394 ESQVPPDKCCDNCRHNE 410 (451)
Q Consensus 394 ~~~~~~~~~Cd~C~~~~ 410 (451)
|-+|||.|+++.
T Consensus 423 -----ckg~cd~c~~p~ 434 (641)
T KOG0352|consen 423 -----CKTNCDYCRDPT 434 (641)
T ss_pred -----CCCCccccCCHH
Confidence 678999999876
No 8
>KOG0353|consensus
Probab=100.00 E-value=8.2e-51 Score=379.10 Aligned_cols=322 Identities=36% Similarity=0.610 Sum_probs=284.5
Q ss_pred chhhhhhcCCCChhhhcCcCccc--cCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKC--CDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSE 113 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~--~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 113 (451)
+|.+..++...+.++...+...+ ++.+++++|+|||++..+..+...|+..
T Consensus 158 gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka--------------------------- 210 (695)
T KOG0353|consen 158 GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKA--------------------------- 210 (695)
T ss_pred CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHH---------------------------
Confidence 56688888887777766555544 3567899999999998876666666553
Q ss_pred cccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCC
Q psy10478 114 LRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193 (451)
Q Consensus 114 l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~ 193 (451)
-..+.+.+|.|||+||-++|||+|||+|..+..+.+.+++.|++++|||++..+.++....|++...
T Consensus 211 -------------~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~ 277 (695)
T KOG0353|consen 211 -------------LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA 277 (695)
T ss_pred -------------hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh
Confidence 1114689999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCceEEEEEecc---hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHH
Q psy10478 194 NIINTGFDRPNLYLAASVKQ---DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQR 270 (451)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~---~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R 270 (451)
..++.+++|||+.|.+..+. ++..+++.++++... .+...||||-+++.++.++..|+.+|+.+..||+.|.+++|
T Consensus 278 ~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dk 356 (695)
T KOG0353|consen 278 FTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDK 356 (695)
T ss_pred heeecccCCCCceeEeeeCCCChHHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccc
Confidence 99999999999999999876 566788888887665 67889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHH---------------------------------
Q psy10478 271 KEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQ--------------------------------- 317 (451)
Q Consensus 271 ~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Q--------------------------------- 317 (451)
..+...|..|+++|+|||-+++||||.|+|++|||..+|+|++.|+|
T Consensus 357 s~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnf 436 (695)
T KOG0353|consen 357 SGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNF 436 (695)
T ss_pred ccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccc
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred ----------HhcccCCCCCCcEEEEEeecccHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHh-hccccHHHHHHhhcC
Q psy10478 318 ----------EIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEKYL-ELRTCRRKYLLNHFK 386 (451)
Q Consensus 318 ----------r~GRagR~g~~g~~i~l~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Crr~~l~~~f~ 386 (451)
..|||||+|.++.|+++|.-.|..+...++.- ...-.+.+-.|.+|+ +.+.|||..+.++|+
T Consensus 437 kiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~-------e~~g~q~ly~mv~y~~d~s~crrv~laehfd 509 (695)
T KOG0353|consen 437 KIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQM-------ENTGIQKLYEMVRYAADISKCRRVKLAEHFD 509 (695)
T ss_pred eeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHH-------HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88999999999999999999999888766543 223345678899999 899999999999999
Q ss_pred CCCcccccCCCCCCCCCCCCCCCc
Q psy10478 387 GSSVTVAESQVPPDKCCDNCRHNE 410 (451)
Q Consensus 387 ~~~~~~~~~~~~~~~~Cd~C~~~~ 410 (451)
+.+.+.. |...||||-...
T Consensus 510 e~w~~~~-----c~k~cd~c~~~n 528 (695)
T KOG0353|consen 510 EAWEPEA-----CNKMCDNCCKDN 528 (695)
T ss_pred hhcCHHH-----HHHHhhhhccCc
Confidence 9998766 888999997654
No 9
>KOG0331|consensus
Probab=100.00 E-value=2.4e-40 Score=329.26 Aligned_cols=316 Identities=23% Similarity=0.278 Sum_probs=243.0
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCC--------CeeEEEeCccccccchhhHhhhhhhhhhh---cc
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDN--------CRQVVYMTPEYVTNNTSFLSRIPRIVLIA---ID 92 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~--------~~~vl~~tPe~l~~~~~~~~~l~~~~~~~---~d 92 (451)
...++....+++.+..+-++||+|.+....++..+.++ ...+|+++|.|-+..+ +...+..++--. .-
T Consensus 119 aq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~Q-V~~~~~~~~~~~~~~~~ 197 (519)
T KOG0331|consen 119 AQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQ-VQAEAREFGKSLRLRST 197 (519)
T ss_pred hcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHH-HHHHHHHHcCCCCccEE
Confidence 44566677789999999999999999988877766642 6789999999999876 444443331100 11
Q ss_pred cceeccccCCCCcchhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhcc-CCCC
Q psy10478 93 EAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP-LPDV 167 (451)
Q Consensus 93 e~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~-~~~~ 167 (451)
+...+..++.+.+. ..+-.+++++||++.+.++.. |+++.++|+||||.|+++| |+++.+.| +.+. .+..
T Consensus 198 cvyGG~~~~~Q~~~-l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG--Fe~qI~~I--l~~i~~~~r 272 (519)
T KOG0331|consen 198 CVYGGAPKGPQLRD-LERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG--FEPQIRKI--LSQIPRPDR 272 (519)
T ss_pred EEeCCCCccHHHHH-HhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc--cHHHHHHH--HHhcCCCcc
Confidence 11222333333222 223366999999999998865 7789999999999999999 99999887 3344 2455
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCC-----CceE-EEEEecchhHHHHHHHHHhhcc-CCCCcEEEEcCC
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDR-----PNLY-LAASVKQDDIMADLRKLTNFEN-QFEGSTIIYCPT 240 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~-----~~l~-~~~~~~~~~~~~~L~~~l~~~~-~~~~~~iVF~~t 240 (451)
|++++|||.|..+..-....+. +|..+...... .++. +........+...|..++.... ..++|+||||+|
T Consensus 273 Qtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~t 350 (519)
T KOG0331|consen 273 QTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCET 350 (519)
T ss_pred cEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecc
Confidence 8999999999998764444444 66555544321 1221 1222223445555556555442 477899999999
Q ss_pred hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhc
Q psy10478 241 KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIG 320 (451)
Q Consensus 241 ~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~G 320 (451)
++.|++|+..|+..++++..+||+.++.+|+.+++.|++|+..|||||++++||+|+|+|++|||||+|.+.++|+||+|
T Consensus 351 kr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiG 430 (519)
T KOG0331|consen 351 KRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIG 430 (519)
T ss_pred hhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEEeecccHHHHhhhh
Q psy10478 321 RAGRDGLSSVCYTFYKTADFTKNNMIF 347 (451)
Q Consensus 321 RagR~g~~g~~i~l~~~~d~~~~~~~~ 347 (451)
|+||.|+.|.+++|+...+......++
T Consensus 431 RTGRa~~~G~A~tfft~~~~~~a~~l~ 457 (519)
T KOG0331|consen 431 RTGRAGKKGTAITFFTSDNAKLARELI 457 (519)
T ss_pred ccccCCCCceEEEEEeHHHHHHHHHHH
Confidence 999999999999999998877665443
No 10
>KOG0328|consensus
Probab=100.00 E-value=2e-38 Score=285.82 Aligned_cols=306 Identities=20% Similarity=0.250 Sum_probs=238.3
Q ss_pred hhcccchhhhhhcCCCChhhhcCcCccc--cCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceec---cccCCCCc
Q psy10478 31 TCRRKYLLNHFKGSSVTMAESQVPPDKC--CDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCV---SQWGHDFR 105 (451)
Q Consensus 31 ~~~~~~i~a~~~~s~~~~~e~~~~~~~~--~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~---~~~~~~~~ 105 (451)
..+++.|.-+-.+-|+|.....-+.+.+ ...+++++++||.+-+..+ ..+.+..++-..--.+|-+ ...|.+.+
T Consensus 62 lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Q-i~~vi~alg~~mnvq~hacigg~n~gedik 140 (400)
T KOG0328|consen 62 LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQ-IQKVILALGDYMNVQCHACIGGKNLGEDIK 140 (400)
T ss_pred hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHH-HHHHHHHhcccccceEEEEecCCccchhhh
Confidence 3356666555556666666555555543 3446899999999998766 5555444432221222311 34455544
Q ss_pred chhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHH
Q psy10478 106 PSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVI 181 (451)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~ 181 (451)
..- .-.+.+.++|++.+....+ -..+.++|+||||.+++.| |..+.-.+ ++..+|+.|++++|||+|.++.
T Consensus 141 kld-~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg--fk~Qiydi--yr~lp~~~Qvv~~SATlp~eil 215 (400)
T KOG0328|consen 141 KLD-YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG--FKEQIYDI--YRYLPPGAQVVLVSATLPHEIL 215 (400)
T ss_pred hhc-ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhh--HHHHHHHH--HHhCCCCceEEEEeccCcHHHH
Confidence 443 3467899999999887644 2578999999999999877 77766555 4445679999999999999988
Q ss_pred HHHHHhcCCCCCeEEecCCCCCc-----eEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCC
Q psy10478 182 DDICTSLMLRDPNIINTGFDRPN-----LYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGI 256 (451)
Q Consensus 182 ~~i~~~l~l~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~ 256 (451)
+ .....+.+|..+....+... .+|....+++.+++.|..+.... .-.+++|||||+..+++|.+.+++..+
T Consensus 216 e--mt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nf 291 (400)
T KOG0328|consen 216 E--MTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANF 291 (400)
T ss_pred H--HHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCc
Confidence 7 34445678876655444332 24444555577899888887765 667899999999999999999999999
Q ss_pred CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 257 QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 257 ~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
.+...||+|++++|.++...|++|+.+||++|++.+||+|+|.|++|||||+|.+.+.|+||+||.||.|+.|.++-|+.
T Consensus 292 tVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk 371 (400)
T KOG0328|consen 292 TVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 371 (400)
T ss_pred eeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHhhh
Q psy10478 337 TADFTKNNMI 346 (451)
Q Consensus 337 ~~d~~~~~~~ 346 (451)
.+|...++.+
T Consensus 372 ~~d~~~lrdi 381 (400)
T KOG0328|consen 372 SDDLRILRDI 381 (400)
T ss_pred HHHHHHHHHH
Confidence 9998877644
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-38 Score=325.31 Aligned_cols=312 Identities=21% Similarity=0.257 Sum_probs=242.5
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--C-Cee-EEEeCccccccchhhHhhhhhhhhhh--c--ccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--N-CRQ-VVYMTPEYVTNNTSFLSRIPRIVLIA--I--DEA 94 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~-~~~-vl~~tPe~l~~~~~~~~~l~~~~~~~--~--de~ 94 (451)
+...++....+++.+..+-+|+|+|.+....+++.+.. . ... .|+++|.+.+..+ ..+.+..+.... + -..
T Consensus 56 Q~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Q-i~~~~~~~~~~~~~~~~~~i 134 (513)
T COG0513 56 QLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQ-IAEELRKLGKNLGGLRVAVV 134 (513)
T ss_pred HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHH-HHHHHHHHHhhcCCccEEEE
Confidence 56667777778999999999999999998888887652 2 222 8999999998877 666665542211 0 111
Q ss_pred eeccccCCCCcchhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEE
Q psy10478 95 HCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPIL 170 (451)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v 170 (451)
..+.....+... .+.-.+++++||++.+..+.+ +.++.++|+||||.|++.| |.+....+... ..++.+++
T Consensus 135 ~GG~~~~~q~~~-l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~G--f~~~i~~I~~~--~p~~~qtl 209 (513)
T COG0513 135 YGGVSIRKQIEA-LKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMG--FIDDIEKILKA--LPPDRQTL 209 (513)
T ss_pred ECCCCHHHHHHH-HhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCC--CHHHHHHHHHh--CCcccEEE
Confidence 111111222222 222388999999999988765 5789999999999999998 99999888443 33489999
Q ss_pred EEEeeCChHHHHHHHHhcCCCCCeEEecCCC-----CCceEEEEE-ecch-hHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 171 AVTATATPVVIDDICTSLMLRDPNIINTGFD-----RPNLYLAAS-VKQD-DIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 171 ~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~-----~~~l~~~~~-~~~~-~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
+||||++..+.. +...+ +.+|..+..... .+++...+. .... .+...|..++... ...++||||+|+..
T Consensus 210 lfSAT~~~~i~~-l~~~~-l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~--~~~~~IVF~~tk~~ 285 (513)
T COG0513 210 LFSATMPDDIRE-LARRY-LNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDE--DEGRVIVFVRTKRL 285 (513)
T ss_pred EEecCCCHHHHH-HHHHH-ccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCcHHH
Confidence 999999996544 44433 447766655421 223322222 2222 4888888888876 55589999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccC
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAG 323 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag 323 (451)
++.++..|...|+.+..+||+|++++|.++++.|++|+.+||||||+++||||+|+|++|||||+|.+.+.|+||+||+|
T Consensus 286 ~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTg 365 (513)
T COG0513 286 VEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTG 365 (513)
T ss_pred HHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeecc-cHHHHh
Q psy10478 324 RDGLSSVCYTFYKTA-DFTKNN 344 (451)
Q Consensus 324 R~g~~g~~i~l~~~~-d~~~~~ 344 (451)
|.|..|.++.|+.+. |...+.
T Consensus 366 RaG~~G~ai~fv~~~~e~~~l~ 387 (513)
T COG0513 366 RAGRKGVAISFVTEEEEVKKLK 387 (513)
T ss_pred cCCCCCeEEEEeCcHHHHHHHH
Confidence 999999999999975 655544
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-37 Score=324.45 Aligned_cols=316 Identities=20% Similarity=0.234 Sum_probs=234.9
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc-------CCCeeEEEeCccccccchhhHhhhhhhhhhhcccce
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC-------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAH 95 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~-------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~ 95 (451)
+...++....+++.+..+-++||+|.+....++..+. .....+||++|.+.+..+ ....+..+.... ...
T Consensus 157 Q~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Q-i~~~~~~~~~~~--~i~ 233 (545)
T PTZ00110 157 QVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQ-IREQCNKFGASS--KIR 233 (545)
T ss_pred HHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHH-HHHHHHHHhccc--Ccc
Confidence 4455666677889999999999999886554443322 124679999999998766 555444431100 000
Q ss_pred eccccCC-CCc---chhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCC
Q psy10478 96 CVSQWGH-DFR---PSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 167 (451)
Q Consensus 96 ~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~ 167 (451)
.....|. ... .....-.+++++||++++.++.. +.++++|||||||+++++| |++.+..+.. ...++.
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g--f~~~i~~il~--~~~~~~ 309 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG--FEPQIRKIVS--QIRPDR 309 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc--hHHHHHHHHH--hCCCCC
Confidence 1111111 111 11223367899999998877643 6789999999999999988 8898877743 334688
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCC----CCceEEEEE-ecchhHHHHHHHHHhhccCCCCcEEEEcCChh
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFD----RPNLYLAAS-VKQDDIMADLRKLTNFENQFEGSTIIYCPTKV 242 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~----~~~l~~~~~-~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~ 242 (451)
+++++|||++..+.. +.+.+....+..+..+.. ..++...+. .....+...|..++......+.++||||+|++
T Consensus 310 q~l~~SAT~p~~v~~-l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~ 388 (545)
T PTZ00110 310 QTLMWSATWPKEVQS-LARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKK 388 (545)
T ss_pred eEEEEEeCCCHHHHH-HHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChH
Confidence 999999999887654 444443334544433221 123322222 22345666677777665446789999999999
Q ss_pred HHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhccc
Q psy10478 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRA 322 (451)
Q Consensus 243 ~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRa 322 (451)
.|+.+++.|...++.+..+||++++++|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.+.++|+||+||+
T Consensus 389 ~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRt 468 (545)
T PTZ00110 389 GADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRT 468 (545)
T ss_pred HHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEeecccHHHHhhh
Q psy10478 323 GRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 323 gR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
||.|..|.+++|+++.|......+
T Consensus 469 GR~G~~G~ai~~~~~~~~~~~~~l 492 (545)
T PTZ00110 469 GRAGAKGASYTFLTPDKYRLARDL 492 (545)
T ss_pred ccCCCCceEEEEECcchHHHHHHH
Confidence 999999999999999887766544
No 13
>KOG0330|consensus
Probab=100.00 E-value=3.9e-38 Score=295.60 Aligned_cols=312 Identities=19% Similarity=0.179 Sum_probs=244.7
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCC--CeeEEEeCccccccchhhHhhhhhhhh-hhcccceeccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDN--CRQVVYMTPEYVTNNTSFLSRIPRIVL-IAIDEAHCVSQ 99 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~--~~~vl~~tPe~l~~~~~~~~~l~~~~~-~~~de~~~~~~ 99 (451)
+...++....++..|.++-++||+|.+...++++.+... .+..+++||.+-+..+ ..+.++.++- +.+..+- .-
T Consensus 88 Q~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~Q-I~e~fe~Lg~~iglr~~~--lv 164 (476)
T KOG0330|consen 88 QSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQ-IAEQFEALGSGIGLRVAV--LV 164 (476)
T ss_pred hhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHH-HHHHHHHhccccCeEEEE--Ee
Confidence 445566666778888899999999999888887765532 4689999999998766 5555544310 1111100 11
Q ss_pred cCCCCcch---hhcccccccCCCCchhhhccc-----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEE
Q psy10478 100 WGHDFRPS---YRCLSELRLPLPDVPILFLSR-----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILA 171 (451)
Q Consensus 100 ~~~~~~~~---~~~~~~l~~~~~~~~~~~l~~-----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~ 171 (451)
-|.+.... ....+.++++||+++...+.+ +..++++|+||||.+++.. |.+.+..| +....++.+.++
T Consensus 165 GG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~d--F~~~ld~I--Lk~ip~erqt~L 240 (476)
T KOG0330|consen 165 GGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMD--FEEELDYI--LKVIPRERQTFL 240 (476)
T ss_pred cCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhh--hHHHHHHH--HHhcCccceEEE
Confidence 23332222 344477888999999988863 6679999999999999865 99988887 334456899999
Q ss_pred EEeeCChHHHHHHHHhcCCCCCeEEecCCCC---Cce--EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHH
Q psy10478 172 VTATATPVVIDDICTSLMLRDPNIINTGFDR---PNL--YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEK 246 (451)
Q Consensus 172 lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~---~~l--~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~ 246 (451)
+|||++..+.+ .....+++|..+..+.-. +.+ +|.+.. ...+...|..+++.. .+.++||||+|...++.
T Consensus 241 fsATMt~kv~k--L~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~-~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~ 315 (476)
T KOG0330|consen 241 FSATMTKKVRK--LQRASLDNPVKVAVSSKYQTVDHLKQTYLFVP-GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRF 315 (476)
T ss_pred EEeecchhhHH--HHhhccCCCeEEeccchhcchHHhhhheEecc-ccccchhHHHHHHhh--cCCcEEEEEeccchHHH
Confidence 99999999876 335556778776654322 111 222222 234556677788766 78999999999999999
Q ss_pred HHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCC
Q psy10478 247 VCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326 (451)
Q Consensus 247 l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 326 (451)
++-.|+..|+.+..+||.|++..|...++.|++|...||||||+++||+|+|.|++|||||+|.+..+|+||+||+||.|
T Consensus 316 la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG 395 (476)
T KOG0330|consen 316 LALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG 395 (476)
T ss_pred HHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecccHHHHhhh
Q psy10478 327 LSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 327 ~~g~~i~l~~~~d~~~~~~~ 346 (451)
..|.++.+++..|.+.+.++
T Consensus 396 rsG~~ItlVtqyDve~~qrI 415 (476)
T KOG0330|consen 396 RSGKAITLVTQYDVELVQRI 415 (476)
T ss_pred CCcceEEEEehhhhHHHHHH
Confidence 99999999999888877655
No 14
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.8e-37 Score=318.07 Aligned_cols=314 Identities=22% Similarity=0.326 Sum_probs=229.6
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc---------CCCeeEEEeCccccccchhhHhhhhhhhhhhccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC---------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDE 93 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~---------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de 93 (451)
+...++....+++.+..+-++||+|......++..+. ..+..+||++|.+.+..+ ....+..+.-.. .
T Consensus 148 Q~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Q-i~~~~~~l~~~~--~ 224 (518)
T PLN00206 148 QMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQ-VEDQAKVLGKGL--P 224 (518)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHH-HHHHHHHHhCCC--C
Confidence 3444555556789999999999999887665554332 245789999999988755 443333221000 0
Q ss_pred ceeccccCCC-Ccch---hhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCC
Q psy10478 94 AHCVSQWGHD-FRPS---YRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP 165 (451)
Q Consensus 94 ~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~ 165 (451)
.......|.+ .... ...-.+++++||++.+..+.+ +.++++|||||||+++++| |++.+..+.. ..+
T Consensus 225 ~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g--f~~~i~~i~~---~l~ 299 (518)
T PLN00206 225 FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG--FRDQVMQIFQ---ALS 299 (518)
T ss_pred ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc--hHHHHHHHHH---hCC
Confidence 0101111111 1111 122357899999998777643 6789999999999999988 8888766633 346
Q ss_pred CCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCC-CCCc--e-EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCCh
Q psy10478 166 DVPILAVTATATPVVIDDICTSLMLRDPNIINTGF-DRPN--L-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTK 241 (451)
Q Consensus 166 ~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~-~~~~--l-~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~ 241 (451)
+.+++++|||+++.+.. +...+ +.++..+..+. .+++ + .+........+...|..++........++||||+|+
T Consensus 300 ~~q~l~~SATl~~~v~~-l~~~~-~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~ 377 (518)
T PLN00206 300 QPQVLLFSATVSPEVEK-FASSL-AKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSR 377 (518)
T ss_pred CCcEEEEEeeCCHHHHH-HHHHh-CCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCc
Confidence 78999999999987654 34433 34555554432 2222 1 122222234455566777665443557899999999
Q ss_pred hHHHHHHHHHHH-CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhc
Q psy10478 242 VICEKVCDVLSR-NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIG 320 (451)
Q Consensus 242 ~~~~~l~~~L~~-~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~G 320 (451)
..++.+++.|.. .++.+..+||+++..+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+|
T Consensus 378 ~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiG 457 (518)
T PLN00206 378 LGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIG 457 (518)
T ss_pred hhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcc
Confidence 999999999985 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEEeecccHHHHhhh
Q psy10478 321 RAGRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 321 RagR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
||||.|..|.+++|++++|...+..+
T Consensus 458 RaGR~g~~G~ai~f~~~~~~~~~~~l 483 (518)
T PLN00206 458 RASRMGEKGTAIVFVNEEDRNLFPEL 483 (518)
T ss_pred ccccCCCCeEEEEEEchhHHHHHHHH
Confidence 99999999999999998876655433
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.6e-37 Score=316.64 Aligned_cols=314 Identities=20% Similarity=0.281 Sum_probs=233.4
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCC--CeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDN--CRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~--~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
+...++....+++.+..+-+++|+|.+....+++.+..+ ..++||++|.+.+..+ ....+..+.... .........
T Consensus 31 Q~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q-~~~~~~~~~~~~-~~~~v~~~~ 108 (460)
T PRK11776 31 QAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQ-VAKEIRRLARFI-PNIKVLTLC 108 (460)
T ss_pred HHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHH-HHHHHHHHHhhC-CCcEEEEEE
Confidence 344444555678889999999999988666666555432 4579999999998766 554444331100 011111111
Q ss_pred C-CCCcc---hhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEE
Q psy10478 101 G-HDFRP---SYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAV 172 (451)
Q Consensus 101 ~-~~~~~---~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~l 172 (451)
| ..... ....-.+++++||++....+.+ +.++++||+||||+++++| |...+..+. ....+..+++++
T Consensus 109 Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g--~~~~l~~i~--~~~~~~~q~ll~ 184 (460)
T PRK11776 109 GGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG--FQDAIDAII--RQAPARRQTLLF 184 (460)
T ss_pred CCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC--cHHHHHHHH--HhCCcccEEEEE
Confidence 1 11111 1234468899999999877653 5679999999999999988 888877663 333457889999
Q ss_pred EeeCChHHHHHHHHhcCCCCCeEEecCC--CCCceEE-EEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHH
Q psy10478 173 TATATPVVIDDICTSLMLRDPNIINTGF--DRPNLYL-AASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCD 249 (451)
Q Consensus 173 SAT~~~~~~~~i~~~l~l~~~~~~~~~~--~~~~l~~-~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~ 249 (451)
|||+++.... +...+ +.+|..+.... ..+.+.. ........+...+..++... .+.++||||+|++.++.+++
T Consensus 185 SAT~~~~~~~-l~~~~-~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~ 260 (460)
T PRK11776 185 SATYPEGIAA-ISQRF-QRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVAD 260 (460)
T ss_pred EecCcHHHHH-HHHHh-cCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHH
Confidence 9999887754 33332 45565544332 2222222 22223345677777777655 56789999999999999999
Q ss_pred HHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCc
Q psy10478 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSS 329 (451)
Q Consensus 250 ~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g 329 (451)
.|.+.++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|..|
T Consensus 261 ~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G 340 (460)
T PRK11776 261 ALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG 340 (460)
T ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecccHHHHhhh
Q psy10478 330 VCYTFYKTADFTKNNMI 346 (451)
Q Consensus 330 ~~i~l~~~~d~~~~~~~ 346 (451)
.+++|+.+.|...++.+
T Consensus 341 ~ai~l~~~~e~~~~~~i 357 (460)
T PRK11776 341 LALSLVAPEEMQRANAI 357 (460)
T ss_pred eEEEEEchhHHHHHHHH
Confidence 99999999887665433
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-37 Score=314.12 Aligned_cols=313 Identities=19% Similarity=0.213 Sum_probs=229.3
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc---------CCCeeEEEeCccccccchhhHhhhhhhhhhhccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC---------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDE 93 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~---------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de 93 (451)
+...++....+++.+..+-++||+|.+....+++.+. ....++||++|.+.+..+ ....+..+.-.. .
T Consensus 35 Q~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Q-i~~~~~~l~~~~--~ 111 (423)
T PRK04837 35 QALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQ-IHADAEPLAQAT--G 111 (423)
T ss_pred HHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHH-HHHHHHHHhccC--C
Confidence 4445555566788999999999999886555544332 234689999999999766 444333221000 0
Q ss_pred ceeccccCCC-Ccch---hhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCC
Q psy10478 94 AHCVSQWGHD-FRPS---YRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP 165 (451)
Q Consensus 94 ~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~ 165 (451)
.......|.. .... ...-.+++++||++....+.. +.+++++||||||+++++| |...+..+........
T Consensus 112 ~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~--f~~~i~~i~~~~~~~~ 189 (423)
T PRK04837 112 LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLG--FIKDIRWLFRRMPPAN 189 (423)
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcc--cHHHHHHHHHhCCCcc
Confidence 1111111211 1111 222357999999998766533 5789999999999999988 7777766643332223
Q ss_pred CCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCC---CceEEEE-EecchhHHHHHHHHHhhccCCCCcEEEEcCCh
Q psy10478 166 DVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDR---PNLYLAA-SVKQDDIMADLRKLTNFENQFEGSTIIYCPTK 241 (451)
Q Consensus 166 ~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~---~~l~~~~-~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~ 241 (451)
..+.+++|||++.......... +.+|..+...... .++.... ......+...|..++... ...++||||+++
T Consensus 190 ~~~~~l~SAT~~~~~~~~~~~~--~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~ 265 (423)
T PRK04837 190 QRLNMLFSATLSYRVRELAFEH--MNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE--WPDRAIIFANTK 265 (423)
T ss_pred ceeEEEEeccCCHHHHHHHHHH--CCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhc--CCCeEEEEECCH
Confidence 4567899999998876644443 3456555433211 2222211 122345666777777654 578999999999
Q ss_pred hHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcc
Q psy10478 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGR 321 (451)
Q Consensus 242 ~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GR 321 (451)
..|+.+++.|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+||
T Consensus 266 ~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR 345 (423)
T PRK04837 266 HRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGR 345 (423)
T ss_pred HHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEEeecccHHHHh
Q psy10478 322 AGRDGLSSVCYTFYKTADFTKNN 344 (451)
Q Consensus 322 agR~g~~g~~i~l~~~~d~~~~~ 344 (451)
+||.|+.|.+++|+.+.|...+.
T Consensus 346 ~gR~G~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 346 TGRAGASGHSISLACEEYALNLP 368 (423)
T ss_pred ccCCCCCeeEEEEeCHHHHHHHH
Confidence 99999999999999887765544
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-36 Score=312.71 Aligned_cols=317 Identities=18% Similarity=0.193 Sum_probs=233.2
Q ss_pred HHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC---------CCeeEEEeCccccccchhhHhhhhhhhh---
Q psy10478 21 KRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD---------NCRQVVYMTPEYVTNNTSFLSRIPRIVL--- 88 (451)
Q Consensus 21 ~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~---------~~~~vl~~tPe~l~~~~~~~~~l~~~~~--- 88 (451)
.-+...++....+++.+.++-++||+|......+++.+.+ |..++||++|.+.+..+ ..+.+..+.-
T Consensus 112 ~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q-~~~~~~~l~~~~~ 190 (475)
T PRK01297 112 PIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQ-IAKDAAALTKYTG 190 (475)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHH-HHHHHHHhhccCC
Confidence 3345556666778889999999999998876666555433 35789999999999866 4444433310
Q ss_pred hhcccceeccccCCCCcchhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccC
Q psy10478 89 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL 164 (451)
Q Consensus 89 ~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~ 164 (451)
+.+...+.+..+....+.....-.++++.||++++..... ++++++|||||||++++++ |.+.+..+.......
T Consensus 191 ~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~--~~~~l~~i~~~~~~~ 268 (475)
T PRK01297 191 LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMG--FIPQVRQIIRQTPRK 268 (475)
T ss_pred CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcc--cHHHHHHHHHhCCCC
Confidence 0111111111222222222334468999999998765543 5789999999999999887 888887775544333
Q ss_pred CCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCC---CCceEEEE-EecchhHHHHHHHHHhhccCCCCcEEEEcCC
Q psy10478 165 PDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFD---RPNLYLAA-SVKQDDIMADLRKLTNFENQFEGSTIIYCPT 240 (451)
Q Consensus 165 ~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~l~~~~-~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t 240 (451)
++.+++++|||++.........++ .++..+..... .+++...+ ......+...|..++... ...++||||++
T Consensus 269 ~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~IVF~~s 344 (475)
T PRK01297 269 EERQTLLFSATFTDDVMNLAKQWT--TDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQN--PWERVMVFANR 344 (475)
T ss_pred CCceEEEEEeecCHHHHHHHHHhc--cCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhc--CCCeEEEEeCC
Confidence 467899999999887765433332 34544433221 12222111 122244556666666654 56799999999
Q ss_pred hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhc
Q psy10478 241 KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIG 320 (451)
Q Consensus 241 ~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~G 320 (451)
++.++.+++.|...++.+..+||+++.++|.++++.|++|+++|||||+++++|||+|++++||++|+|.|..+|+||+|
T Consensus 345 ~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~G 424 (475)
T PRK01297 345 KDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIG 424 (475)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEEeecccHHHHh
Q psy10478 321 RAGRDGLSSVCYTFYKTADFTKNN 344 (451)
Q Consensus 321 RagR~g~~g~~i~l~~~~d~~~~~ 344 (451)
|+||.|..|.+++|++++|...+.
T Consensus 425 RaGR~g~~g~~i~~~~~~d~~~~~ 448 (475)
T PRK01297 425 RTGRAGASGVSISFAGEDDAFQLP 448 (475)
T ss_pred ccCCCCCCceEEEEecHHHHHHHH
Confidence 999999999999999877655443
No 18
>KOG0333|consensus
Probab=100.00 E-value=3.9e-36 Score=291.31 Aligned_cols=250 Identities=24% Similarity=0.340 Sum_probs=197.3
Q ss_pred hhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccccCC
Q psy10478 39 NHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118 (451)
Q Consensus 39 a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (451)
...+-|+.+..|..-.+ +-...|+++||.+|...- ...+--
T Consensus 353 ~vsvigg~s~EEq~fql----s~gceiviatPgrLid~L--enr~lv--------------------------------- 393 (673)
T KOG0333|consen 353 TVSVIGGLSFEEQGFQL----SMGCEIVIATPGRLIDSL--ENRYLV--------------------------------- 393 (673)
T ss_pred EEEEecccchhhhhhhh----hccceeeecCchHHHHHH--HHHHHH---------------------------------
Confidence 44456676766543233 224699999999998632 121111
Q ss_pred CCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCC---------------------C--CCEEEEEee
Q psy10478 119 PDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP---------------------D--VPILAVTAT 175 (451)
Q Consensus 119 ~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~---------------------~--~~~v~lSAT 175 (451)
+....+||+|||+.+.++| |.|++..+........ . .+.+.||||
T Consensus 394 ----------l~qctyvvldeadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftat 461 (673)
T KOG0333|consen 394 ----------LNQCTYVVLDEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTAT 461 (673)
T ss_pred ----------hccCceEeccchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecC
Confidence 1468899999999999999 9999987643321110 1 568999999
Q ss_pred CChHHHHHHHHhcCCCCCeEEecCCCC---CceEEEEEe-cchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHH
Q psy10478 176 ATPVVIDDICTSLMLRDPNIINTGFDR---PNLYLAASV-KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVL 251 (451)
Q Consensus 176 ~~~~~~~~i~~~l~l~~~~~~~~~~~~---~~l~~~~~~-~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L 251 (451)
++|.+.. +++. .+.+|.++..+... |.+...+.. ..+.+...|..++... ...++|||+|+++.|+.+|+.|
T Consensus 462 m~p~ver-lar~-ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~L 537 (673)
T KOG0333|consen 462 MPPAVER-LARS-YLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKIL 537 (673)
T ss_pred CChHHHH-HHHH-HhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHH
Confidence 9998755 3443 35678777654332 223333322 3356688899988876 6889999999999999999999
Q ss_pred HHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEE
Q psy10478 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVC 331 (451)
Q Consensus 252 ~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 331 (451)
.+.|+.+..|||+-++++|+.+++.|++|..+|||||+++++|||+|||++|||||+++++++|.||+||+||+|+.|.+
T Consensus 538 eK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta 617 (673)
T KOG0333|consen 538 EKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA 617 (673)
T ss_pred hhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccHHHH
Q psy10478 332 YTFYKTADFTKN 343 (451)
Q Consensus 332 i~l~~~~d~~~~ 343 (451)
+.|+++.|-..+
T Consensus 618 iSflt~~dt~v~ 629 (673)
T KOG0333|consen 618 ISFLTPADTAVF 629 (673)
T ss_pred EEEeccchhHHH
Confidence 999999886544
No 19
>KOG0342|consensus
Probab=100.00 E-value=4.6e-36 Score=289.47 Aligned_cols=321 Identities=17% Similarity=0.160 Sum_probs=248.7
Q ss_pred HHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc------CCCeeEEEeCccccccchhhHhhhhhhhhhhcc
Q psy10478 19 MMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAID 92 (451)
Q Consensus 19 ~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~d 92 (451)
|..-+...++....+++.+.+|-+++|+|.+-...+++.+. ...+.+++++|.+-+..+ ....+..+ +.-.
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q-~~~eak~L--l~~h 181 (543)
T KOG0342|consen 105 MTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQ-IFAEAKEL--LKYH 181 (543)
T ss_pred hhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHH-HHHHHHHH--HhhC
Confidence 44445555666666779999999999999998777766543 355789999999998866 44444333 1111
Q ss_pred cce-ecccc-CCCCcchhhc---ccccccCCCCchhhhccc-----cCcccEEEEccccccccCCCCcHHHHHHHHHhhc
Q psy10478 93 EAH-CVSQW-GHDFRPSYRC---LSELRLPLPDVPILFLSR-----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRL 162 (451)
Q Consensus 93 e~~-~~~~~-~~~~~~~~~~---~~~l~~~~~~~~~~~l~~-----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~ 162 (451)
+.+ ++.-. |.+++..... -..++++||++++..+.+ ..+++++|+||||++++.| |+..+.+|....
T Consensus 182 ~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~G--F~~di~~Ii~~l- 258 (543)
T KOG0342|consen 182 ESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIG--FEEDVEQIIKIL- 258 (543)
T ss_pred CCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcc--cHHHHHHHHHhc-
Confidence 111 11222 3334443322 477899999999999876 3457899999999999999 999999886554
Q ss_pred cCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCC-------CceEEEEEecchhHHHHHHHHHhhccCCCCcEE
Q psy10478 163 PLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDR-------PNLYLAASVKQDDIMADLRKLTNFENQFEGSTI 235 (451)
Q Consensus 163 ~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~i 235 (451)
....|.++||||.++.+.+-..-.| ..++..+...... -+.-|.+.... ..+..+..+++... ...++|
T Consensus 259 -pk~rqt~LFSAT~~~kV~~l~~~~L-~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~-~~f~ll~~~LKk~~-~~~Kii 334 (543)
T KOG0342|consen 259 -PKQRQTLLFSATQPSKVKDLARGAL-KRDPVFVNVDDGGERETHERLEQGYVVAPSD-SRFSLLYTFLKKNI-KRYKII 334 (543)
T ss_pred -cccceeeEeeCCCcHHHHHHHHHhh-cCCceEeecCCCCCcchhhcccceEEecccc-chHHHHHHHHHHhc-CCceEE
Confidence 3588999999999999876333333 3467766653222 22234444333 33666777777663 338999
Q ss_pred EEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHH
Q psy10478 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAY 315 (451)
Q Consensus 236 VF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y 315 (451)
|||+|...+..+++.|+...++|..+||++++..|..+...|++.+.-||||||+.+||+|+|+|++||+||+|.++.+|
T Consensus 335 VF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~Y 414 (543)
T KOG0342|consen 335 VFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQY 414 (543)
T ss_pred EEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCcEEEEEeecccHHHHhhhhcC
Q psy10478 316 YQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQP 349 (451)
Q Consensus 316 ~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~~~ 349 (451)
+||+||+||.|+.|.++++..|.+...++.+.+-
T Consensus 415 IHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 415 IHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred HHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 9999999999999999999999999988877543
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.2e-36 Score=306.04 Aligned_cols=312 Identities=15% Similarity=0.167 Sum_probs=225.3
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCC--------CeeEEEeCccccccchhhHhhhhhhhhhhcccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDN--------CRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEA 94 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~--------~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~ 94 (451)
+...++....+++.+..+-+++|+|......+++.+... ..++||++|.+.+..+ +.+.+..+.-.. ..
T Consensus 28 Q~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Q-i~~~~~~~~~~~--~~ 104 (456)
T PRK10590 28 QQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQ-IGENVRDYSKYL--NI 104 (456)
T ss_pred HHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHH-HHHHHHHHhccC--CC
Confidence 344444555578889899999999988766655554321 2479999999998766 555444331000 00
Q ss_pred eeccccC-CCCcch---hhcccccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCC
Q psy10478 95 HCVSQWG-HDFRPS---YRCLSELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 166 (451)
Q Consensus 95 ~~~~~~~-~~~~~~---~~~~~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~ 166 (451)
.....+| ..+... ...-.+++++||++.+..+. .++++++|||||||++++|+ |...+..+.. ...+.
T Consensus 105 ~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~--~~~~i~~il~--~l~~~ 180 (456)
T PRK10590 105 RSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMG--FIHDIRRVLA--KLPAK 180 (456)
T ss_pred EEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccc--cHHHHHHHHH--hCCcc
Confidence 1111111 111111 22346789999998876553 26789999999999999988 7666665522 22346
Q ss_pred CCEEEEEeeCChHHHHHHHHhcCCCCCeEEecC---CCCCceEEEEEecc-hhHHHHHHHHHhhccCCCCcEEEEcCChh
Q psy10478 167 VPILAVTATATPVVIDDICTSLMLRDPNIINTG---FDRPNLYLAASVKQ-DDIMADLRKLTNFENQFEGSTIIYCPTKV 242 (451)
Q Consensus 167 ~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~L~~~l~~~~~~~~~~iVF~~t~~ 242 (451)
.+++++|||+++..... ...+ +.++..+... ...+++...+.... ..+...+..++... ...++||||+++.
T Consensus 181 ~q~l~~SAT~~~~~~~l-~~~~-~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~--~~~~~lVF~~t~~ 256 (456)
T PRK10590 181 RQNLLFSATFSDDIKAL-AEKL-LHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKG--NWQQVLVFTRTKH 256 (456)
T ss_pred CeEEEEeCCCcHHHHHH-HHHH-cCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcC--CCCcEEEEcCcHH
Confidence 78999999998876543 3333 3445443322 12223332222222 33444555555543 5679999999999
Q ss_pred HHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhccc
Q psy10478 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRA 322 (451)
Q Consensus 243 ~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRa 322 (451)
.++.+++.|.+.++.+..+||+|++.+|.++++.|++|+++|||||+++++|||+|+|++||||++|.+..+|+||+||+
T Consensus 257 ~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRa 336 (456)
T PRK10590 257 GANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336 (456)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEeecccHHHHhh
Q psy10478 323 GRDGLSSVCYTFYKTADFTKNNM 345 (451)
Q Consensus 323 gR~g~~g~~i~l~~~~d~~~~~~ 345 (451)
||.|..|.+++|+...|...++.
T Consensus 337 GR~g~~G~ai~l~~~~d~~~~~~ 359 (456)
T PRK10590 337 GRAAATGEALSLVCVDEHKLLRD 359 (456)
T ss_pred ccCCCCeeEEEEecHHHHHHHHH
Confidence 99999999999999887665543
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.4e-36 Score=305.92 Aligned_cols=308 Identities=17% Similarity=0.186 Sum_probs=225.9
Q ss_pred HhhhhhcccchhhhhhcCCCChhhhcCcCcccc------CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 27 LELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 27 ~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
++....+++.+..+-+++|+|......+++.+. .+..++||++|.+.+..+ ..+.+..+.-.. ......--
T Consensus 32 i~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q-~~~~~~~l~~~~--~~~v~~~~ 108 (434)
T PRK11192 32 IPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQ-VADQARELAKHT--HLDIATIT 108 (434)
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHH-HHHHHHHHHccC--CcEEEEEE
Confidence 333345677888999999999876555544332 345789999999988655 333332221000 00111111
Q ss_pred C-CC---CcchhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEE
Q psy10478 101 G-HD---FRPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAV 172 (451)
Q Consensus 101 ~-~~---~~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~l 172 (451)
| .. .......-.+++++||++.+..+.. +.++++|||||||+++++| |...+..+... .....++++|
T Consensus 109 gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~--~~~~~~~i~~~--~~~~~q~~~~ 184 (434)
T PRK11192 109 GGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMG--FAQDIETIAAE--TRWRKQTLLF 184 (434)
T ss_pred CCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCC--cHHHHHHHHHh--CccccEEEEE
Confidence 1 11 1112233467999999988766532 4678999999999999988 88888776432 2346789999
Q ss_pred EeeCChHHHHHHHHhcCCCCCeEEecCCC---CCceEEEEEe--cchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHH
Q psy10478 173 TATATPVVIDDICTSLMLRDPNIINTGFD---RPNLYLAASV--KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKV 247 (451)
Q Consensus 173 SAT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~l~~~~~~--~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l 247 (451)
|||++.....++...+. .++..+..... +.++...... ....+...|..++... ...++||||+++..++.+
T Consensus 185 SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~--~~~~~lVF~~s~~~~~~l 261 (434)
T PRK11192 185 SATLEGDAVQDFAERLL-NDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQP--EVTRSIVFVRTRERVHEL 261 (434)
T ss_pred EeecCHHHHHHHHHHHc-cCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCChHHHHHH
Confidence 99998777777777664 45554443322 2223222221 1245566666766543 568999999999999999
Q ss_pred HHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCC
Q psy10478 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 248 ~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 327 (451)
++.|.+.++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+||.|.
T Consensus 262 ~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 341 (434)
T PRK11192 262 AGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGR 341 (434)
T ss_pred HHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeecccHHHHh
Q psy10478 328 SSVCYTFYKTADFTKNN 344 (451)
Q Consensus 328 ~g~~i~l~~~~d~~~~~ 344 (451)
.|.++++++..|...+.
T Consensus 342 ~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 342 KGTAISLVEAHDHLLLG 358 (434)
T ss_pred CceEEEEecHHHHHHHH
Confidence 99999999877665443
No 22
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.6e-36 Score=312.83 Aligned_cols=314 Identities=16% Similarity=0.153 Sum_probs=230.3
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC---------CCeeEEEeCccccccchhhHhhhhhhhhhhccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD---------NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDE 93 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~---------~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de 93 (451)
+...++....+++.+..+-++||+|......+++.+.. ...++||++|.+.+..+ ....+..+.-.. .
T Consensus 36 Q~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Q-i~~~~~~l~~~~--~ 112 (572)
T PRK04537 36 QALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQ-IHKDAVKFGADL--G 112 (572)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHH-HHHHHHHHhccC--C
Confidence 44556666678889999999999998876666554421 24689999999999876 444444331100 0
Q ss_pred ceeccccCC-CCc---chhhcccccccCCCCchhhhccc-----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccC
Q psy10478 94 AHCVSQWGH-DFR---PSYRCLSELRLPLPDVPILFLSR-----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL 164 (451)
Q Consensus 94 ~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~l~~-----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~ 164 (451)
..+....|. ++. .....-.+++++||++++..+.. +..+++|||||||+++++| |...+..+.......
T Consensus 113 i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~g--f~~~i~~il~~lp~~ 190 (572)
T PRK04537 113 LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG--FIKDIRFLLRRMPER 190 (572)
T ss_pred ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcc--hHHHHHHHHHhcccc
Confidence 111111121 111 11223357999999998766532 4678899999999999988 777776654333222
Q ss_pred CCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCC---CCCceEEE-EEecchhHHHHHHHHHhhccCCCCcEEEEcCC
Q psy10478 165 PDVPILAVTATATPVVIDDICTSLMLRDPNIINTGF---DRPNLYLA-ASVKQDDIMADLRKLTNFENQFEGSTIIYCPT 240 (451)
Q Consensus 165 ~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~---~~~~l~~~-~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t 240 (451)
.+.++++||||++..+.......+ ..+..+.... ...++... .......+...|..++... .+.++||||+|
T Consensus 191 ~~~q~ll~SATl~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~--~~~k~LVF~nt 266 (572)
T PRK04537 191 GTRQTLLFSATLSHRVLELAYEHM--NEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRS--EGARTMVFVNT 266 (572)
T ss_pred cCceEEEEeCCccHHHHHHHHHHh--cCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcc--cCCcEEEEeCC
Confidence 367899999999988776554443 3443332211 11222222 2222345566677776654 67899999999
Q ss_pred hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhc
Q psy10478 241 KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIG 320 (451)
Q Consensus 241 ~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~G 320 (451)
+..++.+++.|.+.++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+|
T Consensus 267 ~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiG 346 (572)
T PRK04537 267 KAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIG 346 (572)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEEeecccHHHHhh
Q psy10478 321 RAGRDGLSSVCYTFYKTADFTKNNM 345 (451)
Q Consensus 321 RagR~g~~g~~i~l~~~~d~~~~~~ 345 (451)
|+||.|..|.+++|+.+.+...+..
T Consensus 347 RaGR~G~~G~ai~~~~~~~~~~l~~ 371 (572)
T PRK04537 347 RTARLGEEGDAISFACERYAMSLPD 371 (572)
T ss_pred ccccCCCCceEEEEecHHHHHHHHH
Confidence 9999999999999998876655443
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.2e-35 Score=312.09 Aligned_cols=314 Identities=18% Similarity=0.214 Sum_probs=232.5
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
+...++....+++.+..+-+++|+|.+....+++.+.. ...++||++|.+.+..+ +...+..+.-.. ........+
T Consensus 33 Q~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Q-v~~~l~~~~~~~-~~i~v~~~~ 110 (629)
T PRK11634 33 QAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQ-VAEAMTDFSKHM-RGVNVVALY 110 (629)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHH-HHHHHHHHHhhc-CCceEEEEE
Confidence 34444555567788888999999998865555544432 34689999999998766 544444331100 111222222
Q ss_pred CC-CCcc---hhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEE
Q psy10478 101 GH-DFRP---SYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAV 172 (451)
Q Consensus 101 ~~-~~~~---~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~l 172 (451)
|. .+.. ....-.+++++||++.+..+.+ ++++++|||||||+++.+| |...+..+. ....+..++++|
T Consensus 111 gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g--f~~di~~Il--~~lp~~~q~llf 186 (629)
T PRK11634 111 GGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG--FIEDVETIM--AQIPEGHQTALF 186 (629)
T ss_pred CCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc--cHHHHHHHH--HhCCCCCeEEEE
Confidence 21 1111 1223468999999999876543 5789999999999999988 777766552 223347889999
Q ss_pred EeeCChHHHHHHHHhcCCCCCeEEecC---CCCCceEEEE-EecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHH
Q psy10478 173 TATATPVVIDDICTSLMLRDPNIINTG---FDRPNLYLAA-SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVC 248 (451)
Q Consensus 173 SAT~~~~~~~~i~~~l~l~~~~~~~~~---~~~~~l~~~~-~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~ 248 (451)
|||+++.... +.+.+ +.++..+... ...+++.... ......+...|..++... ...++||||+|+..++.++
T Consensus 187 SAT~p~~i~~-i~~~~-l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~ 262 (629)
T PRK11634 187 SATMPEAIRR-ITRRF-MKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVA 262 (629)
T ss_pred EccCChhHHH-HHHHH-cCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHH
Confidence 9999887755 33333 3455544332 2233432222 222345667777777654 5678999999999999999
Q ss_pred HHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCC
Q psy10478 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLS 328 (451)
Q Consensus 249 ~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~ 328 (451)
+.|.+.|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.+.++|+||+||+||.|+.
T Consensus 263 ~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~ 342 (629)
T PRK11634 263 EALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342 (629)
T ss_pred HHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecccHHHHhhh
Q psy10478 329 SVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 329 g~~i~l~~~~d~~~~~~~ 346 (451)
|.+++|+.+.+...++.+
T Consensus 343 G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 343 GRALLFVENRERRLLRNI 360 (629)
T ss_pred ceEEEEechHHHHHHHHH
Confidence 999999999887666655
No 24
>KOG0338|consensus
Probab=100.00 E-value=3.3e-36 Score=290.78 Aligned_cols=315 Identities=23% Similarity=0.265 Sum_probs=247.0
Q ss_pred HHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc-----CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccc
Q psy10478 25 KYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC-----DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQ 99 (451)
Q Consensus 25 ~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~-----~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~ 99 (451)
+.++....+++-..+|.+++|+|.+...++++.+. ...++||+++|.+-+.-+ .......+.- .++ ..++..
T Consensus 210 a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQ-v~sV~~qlaq-Ft~-I~~~L~ 286 (691)
T KOG0338|consen 210 ATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQ-VHSVTKQLAQ-FTD-ITVGLA 286 (691)
T ss_pred hcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHH-HHHHHHHHHh-hcc-ceeeee
Confidence 34555555677777889999999998777766533 456899999999988644 3333222210 011 222322
Q ss_pred -cCCCCc---chhhcccccccCCCCchhhhccc-----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEE
Q psy10478 100 -WGHDFR---PSYRCLSELRLPLPDVPILFLSR-----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPIL 170 (451)
Q Consensus 100 -~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~-----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v 170 (451)
-|.+.+ ...+.-++++++||++.+.++.+ +.++.++|+||||+|++.| |+..+..|..+ ...+.|.+
T Consensus 287 vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeeg--FademnEii~l--cpk~RQTm 362 (691)
T KOG0338|consen 287 VGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEG--FADEMNEIIRL--CPKNRQTM 362 (691)
T ss_pred ecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHH--HHHHHHHHHHh--ccccccce
Confidence 234433 33566699999999999999876 6789999999999999988 99999888544 34589999
Q ss_pred EEEeeCChHHHHHHHHhcCCCCCeEEecCCCC---Cce---EEEEEecc-hhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 171 AVTATATPVVIDDICTSLMLRDPNIINTGFDR---PNL---YLAASVKQ-DDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 171 ~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~---~~l---~~~~~~~~-~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
+||||++..+.+ +..+.++.|..+....+. |.+ ++.+.... ...-..|..++... ....+|||+.|++.
T Consensus 363 LFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rt--f~~~~ivFv~tKk~ 438 (691)
T KOG0338|consen 363 LFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRT--FQDRTIVFVRTKKQ 438 (691)
T ss_pred eehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHh--cccceEEEEehHHH
Confidence 999999998866 556677888766654433 222 23333332 22333455566555 67889999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccC
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAG 323 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag 323 (451)
|..+.-.|.-.|+++.-+||++++++|.+.++.|++++++|||||++++||+|++.|.+||||.+|.+...|+||+||++
T Consensus 439 AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTA 518 (691)
T KOG0338|consen 439 AHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTA 518 (691)
T ss_pred HHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeecccHHHHhhhhcCC
Q psy10478 324 RDGLSSVCYTFYKTADFTKNNMIFQPN 350 (451)
Q Consensus 324 R~g~~g~~i~l~~~~d~~~~~~~~~~~ 350 (451)
|+|+.|.++.|+..+|...++.++...
T Consensus 519 RAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 519 RAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred hcccCcceEEEeccccHHHHHHHHhhh
Confidence 999999999999999999988887763
No 25
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.5e-35 Score=299.97 Aligned_cols=313 Identities=19% Similarity=0.230 Sum_probs=225.9
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc--CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC--DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~--~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
+...++....+.+.+..+-++||+|......+.+.+. ....++||++|.+.+..+ ....+..+.-.. ...+...+
T Consensus 55 Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q-~~~~~~~~~~~~--~~~~~~~~ 131 (401)
T PTZ00424 55 QQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQ-IQKVVLALGDYL--KVRCHACV 131 (401)
T ss_pred HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHH-HHHHHHHHhhhc--CceEEEEE
Confidence 3344444455677888899999999876555554433 245689999999988765 444443331100 11122222
Q ss_pred CCC-Ccch---hhcccccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEE
Q psy10478 101 GHD-FRPS---YRCLSELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAV 172 (451)
Q Consensus 101 ~~~-~~~~---~~~~~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~l 172 (451)
|.. .... ...-.+++++||+.....+. .+.++++|||||||++++++ |+..+..+ +....++.+++++
T Consensus 132 g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~ 207 (401)
T PTZ00424 132 GGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG--FKGQIYDV--FKKLPPDVQVALF 207 (401)
T ss_pred CCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc--hHHHHHHH--HhhCCCCcEEEEE
Confidence 322 1111 12225789999998776543 26789999999999999877 66665554 3444568899999
Q ss_pred EeeCChHHHHHHHHhcCCCCCeEEecCCC---CCce--EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHH
Q psy10478 173 TATATPVVIDDICTSLMLRDPNIINTGFD---RPNL--YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKV 247 (451)
Q Consensus 173 SAT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~l--~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l 247 (451)
|||+++......... +..+..+..... ...+ .+........+...+..++... ...++||||+|++.++.+
T Consensus 208 SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l 283 (401)
T PTZ00424 208 SATMPNEILELTTKF--MRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYL 283 (401)
T ss_pred EecCCHHHHHHHHHH--cCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHH
Confidence 999998776543333 334443332211 1222 2222222233455566665543 567899999999999999
Q ss_pred HHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCC
Q psy10478 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 248 ~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 327 (451)
++.|.+.++.+..+||+|+.++|..+++.|++|+++|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|.
T Consensus 284 ~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 284 TKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred HHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeecccHHHHhhh
Q psy10478 328 SSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 328 ~g~~i~l~~~~d~~~~~~~ 346 (451)
.|.|+++++++|...+..+
T Consensus 364 ~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 364 KGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred CceEEEEEcHHHHHHHHHH
Confidence 9999999998887766543
No 26
>KOG0336|consensus
Probab=100.00 E-value=6.9e-35 Score=274.85 Aligned_cols=211 Identities=22% Similarity=0.357 Sum_probs=177.8
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCC-CCCc---e
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGF-DRPN---L 205 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~-~~~~---l 205 (451)
..+.++|+||||.|+++| |.|+++.+ +....|+.++++.|||.|+.+.. +..-++.+|.++..+. +-.. .
T Consensus 366 ~siTYlVlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~Vrr--La~sY~Kep~~v~vGsLdL~a~~sV 439 (629)
T KOG0336|consen 366 ASITYLVLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRR--LAQSYLKEPMIVYVGSLDLVAVKSV 439 (629)
T ss_pred eeeEEEEecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHH--HHHHhhhCceEEEecccceeeeeee
Confidence 579999999999999999 99999887 66777999999999999999876 4444567776654432 2110 1
Q ss_pred -EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceE
Q psy10478 206 -YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKV 284 (451)
Q Consensus 206 -~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~i 284 (451)
...+......+++.+..++... ....++||||.++..|+.|...|.-.|+.+..+||+-.+.+|+..++.|++|+++|
T Consensus 440 kQ~i~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrI 518 (629)
T KOG0336|consen 440 KQNIIVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRI 518 (629)
T ss_pred eeeEEecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEE
Confidence 1112223355665555555554 48899999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhh
Q psy10478 285 VVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIF 347 (451)
Q Consensus 285 LVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~ 347 (451)
||||+++++|+|+|||.+|++||+|.++++|+||+||+||.|+.|.++.|+...|+.....++
T Consensus 519 LvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 519 LVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred EEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998776554
No 27
>KOG0343|consensus
Probab=100.00 E-value=3.2e-34 Score=279.31 Aligned_cols=270 Identities=19% Similarity=0.251 Sum_probs=217.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhh
Q psy10478 9 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVL 88 (451)
Q Consensus 9 ~~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~ 88 (451)
+||+.-|+.+++..+.+.+.+ .|+.+-||.........+ ...+||++||++|+.+. ..-..+
T Consensus 150 TRELA~QtFevL~kvgk~h~f--------SaGLiiGG~~~k~E~eRi-----~~mNILVCTPGRLLQHm---de~~~f-- 211 (758)
T KOG0343|consen 150 TRELALQTFEVLNKVGKHHDF--------SAGLIIGGKDVKFELERI-----SQMNILVCTPGRLLQHM---DENPNF-- 211 (758)
T ss_pred hHHHHHHHHHHHHHHhhcccc--------ccceeecCchhHHHHHhh-----hcCCeEEechHHHHHHh---hhcCCC--
Confidence 577777777777777665554 456666776655333333 34799999999999753 111111
Q ss_pred hhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCC
Q psy10478 89 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP 168 (451)
Q Consensus 89 ~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~ 168 (451)
.. +++.++|+||||+++++| |...+..|. -..++..|
T Consensus 212 --------------------------------------~t-~~lQmLvLDEADR~LDMG--Fk~tL~~Ii--~~lP~~RQ 248 (758)
T KOG0343|consen 212 --------------------------------------ST-SNLQMLVLDEADRMLDMG--FKKTLNAII--ENLPKKRQ 248 (758)
T ss_pred --------------------------------------CC-CcceEEEeccHHHHHHHh--HHHHHHHHH--HhCChhhe
Confidence 11 479999999999999999 898887763 23345889
Q ss_pred EEEEEeeCChHHHHHHHHhcCCCCCeEEecCC----CCC-ce--EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCCh
Q psy10478 169 ILAVTATATPVVIDDICTSLMLRDPNIINTGF----DRP-NL--YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTK 241 (451)
Q Consensus 169 ~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~----~~~-~l--~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~ 241 (451)
.++||||.+..+.+ ...|.+.+|.++.... ..| ++ +|.+. ....+++.|..+|+.+ ...+.|||..|+
T Consensus 249 TLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v-~l~~Ki~~L~sFI~sh--lk~K~iVF~Ssc 323 (758)
T KOG0343|consen 249 TLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAATPSNLQQSYVIV-PLEDKIDMLWSFIKSH--LKKKSIVFLSSC 323 (758)
T ss_pred eeeeecccchhHHH--HHHhhcCCCcEEEEeccccccChhhhhheEEEE-ehhhHHHHHHHHHHhc--cccceEEEEehh
Confidence 99999999998876 6667788998776531 122 22 33333 3457889999999988 789999999999
Q ss_pred hHHHHHHHHHHHC--CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHh
Q psy10478 242 VICEKVCDVLSRN--GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEI 319 (451)
Q Consensus 242 ~~~~~l~~~L~~~--~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~ 319 (451)
+++..+++.+... |+++..+||.|++..|.++.+.|...+.-||+||++++||+|+|.|++||++|+|.++.+|+||+
T Consensus 324 Kqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRv 403 (758)
T KOG0343|consen 324 KQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRV 403 (758)
T ss_pred hHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHh
Confidence 9999999999987 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEEeecccHHHHh
Q psy10478 320 GRAGRDGLSSVCYTFYKTADFTKNN 344 (451)
Q Consensus 320 GRagR~g~~g~~i~l~~~~d~~~~~ 344 (451)
||++|.+..|.++++..|++.+.+-
T Consensus 404 GRtAR~~~~G~sll~L~psEeE~~l 428 (758)
T KOG0343|consen 404 GRTARYKERGESLLMLTPSEEEAML 428 (758)
T ss_pred hhhhcccCCCceEEEEcchhHHHHH
Confidence 9999999999999999999855543
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.2e-34 Score=310.30 Aligned_cols=321 Identities=17% Similarity=0.181 Sum_probs=224.7
Q ss_pred CCChhhHHHHHHH-----HHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC-CCeeEEEeCccccccchhh
Q psy10478 6 NLNDSEIQEHSKT-----MMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD-NCRQVVYMTPEYVTNNTSF 79 (451)
Q Consensus 6 ~~~~~~i~~~~~~-----~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~-~~~~vl~~tPe~l~~~~~~ 79 (451)
.-.+.+|.+.++. +..-+...++....+++.+..+-++||+|.+....+++.+.+ ...++||++|.+.+..+ .
T Consensus 19 ~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q-~ 97 (742)
T TIGR03817 19 AWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAAD-Q 97 (742)
T ss_pred CcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHH-H
Confidence 4445567777755 334456666677778999999999999999988888777644 45799999999999877 5
Q ss_pred HhhhhhhhhhhcccceeccccCCCC----cchhhcccccccCCCCchhhhc--------cccCcccEEEEcccccccc-C
Q psy10478 80 LSRIPRIVLIAIDEAHCVSQWGHDF----RPSYRCLSELRLPLPDVPILFL--------SRIPRIVLIAIDEAHCVSQ-W 146 (451)
Q Consensus 80 ~~~l~~~~~~~~de~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~l--------~~l~~l~~vViDEah~~~~-~ 146 (451)
...+..+.. ..... ..++.+. +...+.-.++++++|+.....+ ..++++++|||||||.+.. +
T Consensus 98 ~~~l~~l~~---~~i~v-~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~f 173 (742)
T TIGR03817 98 LRAVRELTL---RGVRP-ATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVF 173 (742)
T ss_pred HHHHHHhcc---CCeEE-EEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCcc
Confidence 555544421 11111 1122221 1122333678889997764221 1257899999999999864 2
Q ss_pred CCCcHHHHHHHHHhhccC-CCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCC-CCCceEEEEEecc-----------
Q psy10478 147 GHDFRPSYRCLSELRLPL-PDVPILAVTATATPVVIDDICTSLMLRDPNIINTGF-DRPNLYLAASVKQ----------- 213 (451)
Q Consensus 147 g~~fr~~~~~l~~l~~~~-~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~-~~~~l~~~~~~~~----------- 213 (451)
|..+...+.++..+.... .+.|++++|||+++... ..+.+...+..++.... .+....+......
T Consensus 174 g~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~--~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 251 (742)
T TIGR03817 174 GSHVALVLRRLRRLCARYGASPVFVLASATTADPAA--AASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAP 251 (742)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH--HHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccc
Confidence 322333444454444443 36789999999987753 34444333322222111 1112222211110
Q ss_pred ------hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC--------CCCeeeecCCCCHHHHHHHHHHhhc
Q psy10478 214 ------DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN--------GIQNRPYHAHISLKQRKEIHGLFVK 279 (451)
Q Consensus 214 ------~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~--------~~~v~~~h~~l~~~~R~~~~~~f~~ 279 (451)
..+...+..++. .+.++||||+|++.++.++..|++. +..+..|||++++++|.+++++|++
T Consensus 252 ~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 252 VRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred cccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 123334444443 5689999999999999999998763 5678999999999999999999999
Q ss_pred CCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeec
Q psy10478 280 DLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKT 337 (451)
Q Consensus 280 g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~ 337 (451)
|++++||||+++++|||+|++++||++|.|.+..+|+||+|||||.|+.|.++++...
T Consensus 328 G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 328 GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999863
No 29
>KOG0345|consensus
Probab=100.00 E-value=6.5e-35 Score=279.78 Aligned_cols=320 Identities=18% Similarity=0.180 Sum_probs=251.5
Q ss_pred HHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc-------CCCeeEEEeCccccccchhhHhhhhhhhhh---
Q psy10478 20 MKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC-------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLI--- 89 (451)
Q Consensus 20 ~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~-------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~--- 89 (451)
..-+.+.+++.-...+.++-+.++||+|.+...+.++.+. .+.+.-|+.||.+-+..+ ..+....+.-.
T Consensus 30 TpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~Q-I~~V~~~F~~~l~~ 108 (567)
T KOG0345|consen 30 TPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQ-IREVAQPFLEHLPN 108 (567)
T ss_pred CHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHH-HHHHHHHHHHhhhc
Confidence 3445666777777788888899999999998777776662 223578999999998866 55544433100
Q ss_pred -hcccceeccccCCCCcchhhcccccccCCCCchhhhccc----cC--cccEEEEccccccccCCCCcHHHHHHHHHhhc
Q psy10478 90 -AIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSR----IP--RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRL 162 (451)
Q Consensus 90 -~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----l~--~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~ 162 (451)
.+...-++.....|.......-+.+.++||+++..++.+ ++ .+.++|+||||+++++| |......|...
T Consensus 109 l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmg--Fe~~~n~ILs~-- 184 (567)
T KOG0345|consen 109 LNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMG--FEASVNTILSF-- 184 (567)
T ss_pred cceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhccc--HHHHHHHHHHh--
Confidence 011111112333445555666688999999999998876 44 89999999999999999 99988877333
Q ss_pred cCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCC----C---ceEEEEEecchhHHHHHHHHHhhccCCCCcEE
Q psy10478 163 PLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDR----P---NLYLAASVKQDDIMADLRKLTNFENQFEGSTI 235 (451)
Q Consensus 163 ~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~----~---~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~i 235 (451)
.+.+...-+||||.+.++.+ ....|+++|..+.+.... | .++|.+. ....+...|..++... ..+++|
T Consensus 185 LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~-~a~eK~~~lv~~L~~~--~~kK~i 259 (567)
T KOG0345|consen 185 LPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSATPSSLALEYLVC-EADEKLSQLVHLLNNN--KDKKCI 259 (567)
T ss_pred cccccccccccchhhHHHHH--HHHhhccCceeeeecccccccCchhhcceeeEe-cHHHHHHHHHHHHhcc--ccccEE
Confidence 23477788999999888866 566788999877654333 2 2344433 3457788888888775 789999
Q ss_pred EEcCChhHHHHHHHHHHHC--CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHH
Q psy10478 236 IYCPTKVICEKVCDVLSRN--GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLS 313 (451)
Q Consensus 236 VF~~t~~~~~~l~~~L~~~--~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~ 313 (451)
||.+|+..++..+..|... ...+..+||.|++..|..+++.|.+....+|+|||+++||||+|+|++||+||+|.++.
T Consensus 260 VFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~ 339 (567)
T KOG0345|consen 260 VFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPS 339 (567)
T ss_pred EEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChh
Confidence 9999999999999998876 57889999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCcEEEEEeecccHHHHhhhhcC
Q psy10478 314 AYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQP 349 (451)
Q Consensus 314 ~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~~~ 349 (451)
.|+||+||+||.|+.|.+++|..+.+..+..++-..
T Consensus 340 ~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 340 SFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred HHHhhcchhhhccCccceEEEecccHHHHHHHHHhc
Confidence 999999999999999999999999888777765444
No 30
>KOG0326|consensus
Probab=100.00 E-value=2.2e-34 Score=263.83 Aligned_cols=274 Identities=21% Similarity=0.246 Sum_probs=213.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhh
Q psy10478 8 NDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIV 87 (451)
Q Consensus 8 ~~~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~ 87 (451)
.++|+.=+++++..++.+-.. +....+.||++..+-...+ .+.++++++||.+.+... .+...
T Consensus 161 PtrelALQtSqvc~~lskh~~--------i~vmvttGGT~lrDDI~Rl----~~~VH~~vgTPGRIlDL~--~KgVa--- 223 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLG--------IKVMVTTGGTSLRDDIMRL----NQTVHLVVGTPGRILDLA--KKGVA--- 223 (459)
T ss_pred ecchhhHHHHHHHHHHhcccC--------eEEEEecCCcccccceeee----cCceEEEEcCChhHHHHH--hcccc---
Confidence 456777777777766654333 4566677887776433323 557899999999998622 11111
Q ss_pred hhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCC
Q psy10478 88 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 167 (451)
Q Consensus 88 ~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~ 167 (451)
.+++..++|+||||.+++. +|.+.+..+..+ .+++.
T Consensus 224 ----------------------------------------~ls~c~~lV~DEADKlLs~--~F~~~~e~li~~--lP~~r 259 (459)
T KOG0326|consen 224 ----------------------------------------DLSDCVILVMDEADKLLSV--DFQPIVEKLISF--LPKER 259 (459)
T ss_pred ----------------------------------------cchhceEEEechhhhhhch--hhhhHHHHHHHh--CCccc
Confidence 1357889999999999874 488988877443 24488
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCC----CCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFD----RPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
|++++|||.|-.+...+.+. +.+|..++.-.. .-..+|... .+..+..-|..+.... .-.+.||||||...
T Consensus 260 QillySATFP~tVk~Fm~~~--l~kPy~INLM~eLtl~GvtQyYafV-~e~qKvhCLntLfskL--qINQsIIFCNS~~r 334 (459)
T KOG0326|consen 260 QILLYSATFPLTVKGFMDRH--LKKPYEINLMEELTLKGVTQYYAFV-EERQKVHCLNTLFSKL--QINQSIIFCNSTNR 334 (459)
T ss_pred eeeEEecccchhHHHHHHHh--ccCcceeehhhhhhhcchhhheeee-chhhhhhhHHHHHHHh--cccceEEEeccchH
Confidence 99999999998887755554 467776653211 112234433 2345566666666555 66789999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccC
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAG 323 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag 323 (451)
+|.+|+.+.+.|+.+.++|+.|.++.|..++..|++|.++.||||+.+.||||++.|++||+||+|++.++|+||+||+|
T Consensus 335 VELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsG 414 (459)
T KOG0326|consen 335 VELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG 414 (459)
T ss_pred hHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeecccHHHHhhhh
Q psy10478 324 RDGLSSVCYTFYKTADFTKNNMIF 347 (451)
Q Consensus 324 R~g~~g~~i~l~~~~d~~~~~~~~ 347 (451)
|.|..|.++.+++-+|...+..+.
T Consensus 415 RFGhlGlAInLityedrf~L~~IE 438 (459)
T KOG0326|consen 415 RFGHLGLAINLITYEDRFNLYRIE 438 (459)
T ss_pred cCCCcceEEEEEehhhhhhHHHHH
Confidence 999999999999988887665543
No 31
>KOG0335|consensus
Probab=100.00 E-value=5.1e-33 Score=272.55 Aligned_cols=313 Identities=19% Similarity=0.229 Sum_probs=236.4
Q ss_pred HHhhhhhcccchhhhhhcCCCChhhhcCcCccccCC------------CeeEEEeCccccccchhhHhhhhhhhh---hh
Q psy10478 26 YLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDN------------CRQVVYMTPEYVTNNTSFLSRIPRIVL---IA 90 (451)
Q Consensus 26 ~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~------------~~~vl~~tPe~l~~~~~~~~~l~~~~~---~~ 90 (451)
.++....++.++..|-++||+|.+....+++.+... ....++++|.+-+..+ .+..-+.+.. +-
T Consensus 104 sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Q-i~nea~k~~~~s~~~ 182 (482)
T KOG0335|consen 104 SIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQ-IYNEARKFSYLSGMK 182 (482)
T ss_pred ccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhH-HHHHHHhhcccccce
Confidence 355566788999999999999999877666654422 3689999999998876 4444433311 11
Q ss_pred cccceeccccCCCCcchhhcccccccCCCCchhhhccc----cCcccEEEEcccccccc-CCCCcHHHHHHHHHhhccC-
Q psy10478 91 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQ-WGHDFRPSYRCLSELRLPL- 164 (451)
Q Consensus 91 ~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~-~g~~fr~~~~~l~~l~~~~- 164 (451)
.-........+++.+.+.+. -++.++||+++..+..+ |.+++++|+||||.|++ +| |.|.++.|..-....
T Consensus 183 ~~~~ygg~~~~~q~~~~~~g-cdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~ 259 (482)
T KOG0335|consen 183 SVVVYGGTDLGAQLRFIKRG-CDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPP 259 (482)
T ss_pred eeeeeCCcchhhhhhhhccC-ccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCC
Confidence 11111112222333333332 45778999999888765 67889999999999998 78 999999886544443
Q ss_pred -CCCCEEEEEeeCChHHHHHHHHhcCCCCCe---EEecCCCCCceEEEEEec-chhHHHHHHHHHhhcc-------CCCC
Q psy10478 165 -PDVPILAVTATATPVVIDDICTSLMLRDPN---IINTGFDRPNLYLAASVK-QDDIMADLRKLTNFEN-------QFEG 232 (451)
Q Consensus 165 -~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~---~~~~~~~~~~l~~~~~~~-~~~~~~~L~~~l~~~~-------~~~~ 232 (451)
.+.+.++||||.+..... +...+-..+.. +...+...+++.-.+... ..++...|.+++.... ...+
T Consensus 260 ~~~~qt~mFSAtfp~~iq~-l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e 338 (482)
T KOG0335|consen 260 KNNRQTLLFSATFPKEIQR-LAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWE 338 (482)
T ss_pred ccceeEEEEeccCChhhhh-hHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccc
Confidence 378899999999988876 33333233232 234455566665444333 3456667777765432 1223
Q ss_pred cEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCH
Q psy10478 233 STIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDL 312 (451)
Q Consensus 233 ~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~ 312 (451)
+++|||.|++.+..++.+|...++++..+||..++.+|.+.++.|++|.+.+||||++++||+|+|+|++||+||+|.+.
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~ 418 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADI 418 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCcEEEEEeecccHHHH
Q psy10478 313 SAYYQEIGRAGRDGLSSVCYTFYKTADFTKN 343 (451)
Q Consensus 313 ~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~ 343 (451)
.+|+||+||+||.|..|.++.|++..+....
T Consensus 419 d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~ 449 (482)
T KOG0335|consen 419 DDYVHRIGRTGRVGNGGRATSFFNEKNQNIA 449 (482)
T ss_pred hhHHHhccccccCCCCceeEEEeccccchhH
Confidence 9999999999999999999999996554443
No 32
>KOG0341|consensus
Probab=100.00 E-value=3.6e-33 Score=261.68 Aligned_cols=269 Identities=20% Similarity=0.280 Sum_probs=207.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhh
Q psy10478 8 NDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIV 87 (451)
Q Consensus 8 ~~~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~ 87 (451)
..||+..++..+++|..+.+. ..+...+.+...-||.+..+..... +.+++|+++||.+|..- +....-++
T Consensus 254 PSRELArQt~~iie~~~~~L~--e~g~P~lRs~LciGG~~v~eql~~v----~~GvHivVATPGRL~Dm--L~KK~~sL- 324 (610)
T KOG0341|consen 254 PSRELARQTHDIIEQYVAALQ--EAGYPELRSLLCIGGVPVREQLDVV----RRGVHIVVATPGRLMDM--LAKKIMSL- 324 (610)
T ss_pred CcHHHHHHHHHHHHHHHHHHH--hcCChhhhhhhhhcCccHHHHHHHH----hcCeeEEEcCcchHHHH--HHHhhccH-
Confidence 468888888888888655433 3445566678888999988765554 33589999999998652 22222111
Q ss_pred hhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCC
Q psy10478 88 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 167 (451)
Q Consensus 88 ~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~ 167 (451)
.-.+++.+||||++.+.| |..+++.+-.+. -...
T Consensus 325 ------------------------------------------d~CRyL~lDEADRmiDmG--FEddir~iF~~F--K~QR 358 (610)
T KOG0341|consen 325 ------------------------------------------DACRYLTLDEADRMIDMG--FEDDIRTIFSFF--KGQR 358 (610)
T ss_pred ------------------------------------------HHHHHhhhhhHHHHhhcc--chhhHHHHHHHH--hhhh
Confidence 236799999999999999 888888774432 2478
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCC-CceEEEEEe-----cchhHHHHHHHHHhhccCCCCcEEEEcCCh
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDR-PNLYLAASV-----KQDDIMADLRKLTNFENQFEGSTIIYCPTK 241 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~-~~l~~~~~~-----~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~ 241 (451)
|.++||||+|...+. ...-.+-.|..++++..- .++ .+.. +++.++-.|.+-+ .+...+++|||..+
T Consensus 359 QTLLFSATMP~KIQ~--FAkSALVKPvtvNVGRAGAAsl--dViQevEyVkqEaKiVylLeCL---QKT~PpVLIFaEkK 431 (610)
T KOG0341|consen 359 QTLLFSATMPKKIQN--FAKSALVKPVTVNVGRAGAASL--DVIQEVEYVKQEAKIVYLLECL---QKTSPPVLIFAEKK 431 (610)
T ss_pred heeeeeccccHHHHH--HHHhhcccceEEecccccccch--hHHHHHHHHHhhhhhhhHHHHh---ccCCCceEEEeccc
Confidence 999999999988755 333335577777664322 111 1111 1122222333333 33678999999999
Q ss_pred hHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcc
Q psy10478 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGR 321 (451)
Q Consensus 242 ~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GR 321 (451)
..++.+.++|--.|+.+..+|||-++++|...++.|+.|+-+|||||++++.|+|+|++.+|||||+|..++.|+||+||
T Consensus 432 ~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGR 511 (610)
T KOG0341|consen 432 ADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGR 511 (610)
T ss_pred cChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEEeecc
Q psy10478 322 AGRDGLSSVCYTFYKTA 338 (451)
Q Consensus 322 agR~g~~g~~i~l~~~~ 338 (451)
+||.|+.|.+..|.+..
T Consensus 512 TGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 512 TGRSGKTGIATTFINKN 528 (610)
T ss_pred cCCCCCcceeeeeeccc
Confidence 99999999999998754
No 33
>KOG0346|consensus
Probab=100.00 E-value=2.4e-32 Score=260.03 Aligned_cols=274 Identities=18% Similarity=0.263 Sum_probs=219.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhh
Q psy10478 7 LNDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRI 86 (451)
Q Consensus 7 ~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~ 86 (451)
+.++|+..|+..+++++-.++... +.++-+.+..+..... ....+..+|+++||.+++... -...+..
T Consensus 100 vPTkEL~qQvy~viekL~~~c~k~------lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~~ll~~~-~~~~~~~- 167 (569)
T KOG0346|consen 100 VPTKELAQQVYKVIEKLVEYCSKD------LRAINLASSMSDSVNS----VALMDLPDIVVATPAKLLRHL-AAGVLEY- 167 (569)
T ss_pred echHHHHHHHHHHHHHHHHHHHHh------hhhhhhhcccchHHHH----HHHccCCCeEEeChHHHHHHH-hhccchh-
Confidence 357899999999999987776642 2345555555555433 344567899999999998633 1111111
Q ss_pred hhhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCC
Q psy10478 87 VLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 166 (451)
Q Consensus 87 ~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~ 166 (451)
+..+.++|+||||.++.+| |...+..+.... ++.
T Consensus 168 ------------------------------------------~~~l~~LVvDEADLllsfG--Yeedlk~l~~~L--Pr~ 201 (569)
T KOG0346|consen 168 ------------------------------------------LDSLSFLVVDEADLLLSFG--YEEDLKKLRSHL--PRI 201 (569)
T ss_pred ------------------------------------------hhheeeEEechhhhhhhcc--cHHHHHHHHHhC--Cch
Confidence 1369999999999999999 888887774432 457
Q ss_pred CCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCC-C----ceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCCh
Q psy10478 167 VPILAVTATATPVVIDDICTSLMLRDPNIINTGFDR-P----NLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTK 241 (451)
Q Consensus 167 ~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~-~----~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~ 241 (451)
.|.++||||++.++.. .+.+.+.+|.++...-.. + -..|.+.....+++..+..+++-.. -.++.|||+||+
T Consensus 202 ~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~L-I~gKsliFVNtI 278 (569)
T KOG0346|consen 202 YQCFLMSATLSDDVQA--LKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRL-IRGKSLIFVNTI 278 (569)
T ss_pred hhheeehhhhhhHHHH--HHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHH-hcCceEEEEech
Confidence 8899999999998866 778889999886543211 1 1356666666677777777665544 578999999999
Q ss_pred hHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-------------------------------
Q psy10478 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA------------------------------- 290 (451)
Q Consensus 242 ~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~------------------------------- 290 (451)
+.+..+.-.|...|++...++|.|+...|..+++.|..|-++|+||||.
T Consensus 279 dr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D 358 (569)
T KOG0346|consen 279 DRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLD 358 (569)
T ss_pred hhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccC
Confidence 9999999999999999999999999999999999999999999999981
Q ss_pred ----cccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 291 ----FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 291 ----~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
.+||||+.+|..|+|||+|.+..+|+||+||++|++.+|.++.|+.|.+..
T Consensus 359 ~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 359 KESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred chhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 679999999999999999999999999999999999999999999998766
No 34
>KOG0340|consensus
Probab=100.00 E-value=3.1e-32 Score=253.18 Aligned_cols=326 Identities=17% Similarity=0.129 Sum_probs=230.9
Q ss_pred HHHHHHHHH-----HHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCe--eEEEeCccccccchhhHhhhh
Q psy10478 12 IQEHSKTMM-----KRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCR--QVVYMTPEYVTNNTSFLSRIP 84 (451)
Q Consensus 12 i~~~~~~~~-----~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~--~vl~~tPe~l~~~~~~~~~l~ 84 (451)
++++++.|- .-+.+.++...++++.+-+|-++||+|.+--..+++++....+ =-+|.||.+-+.-+ ..+.+.
T Consensus 18 lve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~Q-iaEQF~ 96 (442)
T KOG0340|consen 18 LVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQ-IAEQFI 96 (442)
T ss_pred HHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHH-HHHHHH
Confidence 445555543 2256677888889999999999999999988888887765544 35788998876533 222221
Q ss_pred hhhh-hhcccceeccccC--CC--CcchhhcccccccCCCCchhhhccc--------cCcccEEEEccccccccCCCCcH
Q psy10478 85 RIVL-IAIDEAHCVSQWG--HD--FRPSYRCLSELRLPLPDVPILFLSR--------IPRIVLIAIDEAHCVSQWGHDFR 151 (451)
Q Consensus 85 ~~~~-~~~de~~~~~~~~--~~--~~~~~~~~~~l~~~~~~~~~~~l~~--------l~~l~~vViDEah~~~~~g~~fr 151 (451)
-++- +.. .+..-.| +. ........+++++.+|++..-.+.. +.++.++|+||||.+++-+ |.
T Consensus 97 alGk~l~l---K~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~--f~ 171 (442)
T KOG0340|consen 97 ALGKLLNL---KVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC--FP 171 (442)
T ss_pred Hhcccccc---eEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc--hh
Confidence 1100 000 0111111 00 1122344577889999998776644 5679999999999999854 77
Q ss_pred HHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCC--CeEEecCCCCC---ce--EEEEEecchhHHHHHHHHH
Q psy10478 152 PSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRD--PNIINTGFDRP---NL--YLAASVKQDDIMADLRKLT 224 (451)
Q Consensus 152 ~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~--~~~~~~~~~~~---~l--~~~~~~~~~~~~~~L~~~l 224 (451)
..+.-+.. ..+...|.++||||++....+. ....... +.......+.+ .+ .|..... ..+-..|..++
T Consensus 172 d~L~~i~e--~lP~~RQtLlfSATitd~i~ql--~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~-~vkdaYLv~~L 246 (442)
T KOG0340|consen 172 DILEGIEE--CLPKPRQTLLFSATITDTIKQL--FGCPITKSIAFELEVIDGVSTVETLYQGYILVSI-DVKDAYLVHLL 246 (442)
T ss_pred hHHhhhhc--cCCCccceEEEEeehhhHHHHh--hcCCcccccceEEeccCCCCchhhhhhheeecch-hhhHHHHHHHH
Confidence 76665522 2233569999999998776542 2222222 22222211111 11 2222211 12223344444
Q ss_pred hhcc-CCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEE
Q psy10478 225 NFEN-QFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCV 303 (451)
Q Consensus 225 ~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~V 303 (451)
.... +..+.++||+++..+|+.++..|+..++.+..+||.|++.+|...+.+|+++..+||||||+++||+|+|.|..|
T Consensus 247 r~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LV 326 (442)
T KOG0340|consen 247 RDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELV 326 (442)
T ss_pred hhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEE
Confidence 4432 267889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhhc
Q psy10478 304 IHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQ 348 (451)
Q Consensus 304 I~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~~ 348 (451)
||+|.|.++.+|+||+||++|+|+.|.++.++++.|...+..+.+
T Consensus 327 vN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 327 VNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred EecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHH
Confidence 999999999999999999999999999999999999988776543
No 35
>KOG0332|consensus
Probab=99.97 E-value=1.1e-30 Score=244.32 Aligned_cols=266 Identities=23% Similarity=0.312 Sum_probs=201.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhh
Q psy10478 7 LNDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRI 86 (451)
Q Consensus 7 ~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~ 86 (451)
+.++|+..++-.++.+-.+..++. +.+..-+. ...+...+ .-+|+++||..++. |...+..+
T Consensus 167 aPtrELA~Q~~eVv~eMGKf~~it--------a~yair~s-k~~rG~~i------~eqIviGTPGtv~D---lm~klk~i 228 (477)
T KOG0332|consen 167 APTRELAPQTGEVVEEMGKFTELT--------ASYAIRGS-KAKRGNKL------TEQIVIGTPGTVLD---LMLKLKCI 228 (477)
T ss_pred CchHHHHHHHHHHHHHhcCceeee--------EEEEecCc-ccccCCcc------hhheeeCCCccHHH---HHHHHHhh
Confidence 457888888888888776655432 22212111 11111111 13799999998876 55555433
Q ss_pred hhhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEcccccccc-CCCCcHHHHHHHHHhhccCC
Q psy10478 87 VLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQ-WGHDFRPSYRCLSELRLPLP 165 (451)
Q Consensus 87 ~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~-~g~~fr~~~~~l~~l~~~~~ 165 (451)
.+..++.+|+|||+.+.+ .| |+..-.+|.. ...+
T Consensus 229 -----------------------------------------d~~kikvfVlDEAD~Mi~tqG--~~D~S~rI~~--~lP~ 263 (477)
T KOG0332|consen 229 -----------------------------------------DLEKIKVFVLDEADVMIDTQG--FQDQSIRIMR--SLPR 263 (477)
T ss_pred -----------------------------------------ChhhceEEEecchhhhhhccc--ccccchhhhh--hcCC
Confidence 114799999999998875 34 6666555533 3335
Q ss_pred CCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCC---Cc--eEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCC
Q psy10478 166 DVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDR---PN--LYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPT 240 (451)
Q Consensus 166 ~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~---~~--l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t 240 (451)
+.+++++|||....+.....+.+ +++..+...... ++ ..|........+++.|.++.... .-++.||||.|
T Consensus 264 ~~QllLFSATf~e~V~~Fa~kiv--pn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~--tigqsiIFc~t 339 (477)
T KOG0332|consen 264 NQQLLLFSATFVEKVAAFALKIV--PNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLL--TIGQSIIFCHT 339 (477)
T ss_pred cceEEeeechhHHHHHHHHHHhc--CCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhh--hhhheEEEEee
Confidence 89999999999888877555554 455444332222 22 24444455578888888876554 67899999999
Q ss_pred hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC------CHHH
Q psy10478 241 KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK------DLSA 314 (451)
Q Consensus 241 ~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------s~~~ 314 (451)
++.|.+++..|.+.|..|..+||+|...+|..+++.|+.|+.+|||+|++++||||++.|++|||||+|- +.+.
T Consensus 340 k~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~et 419 (477)
T KOG0332|consen 340 KATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYET 419 (477)
T ss_pred hhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 7899
Q ss_pred HHHHhcccCCCCCCcEEEEEeeccc
Q psy10478 315 YYQEIGRAGRDGLSSVCYTFYKTAD 339 (451)
Q Consensus 315 y~Qr~GRagR~g~~g~~i~l~~~~d 339 (451)
|+||+||+||.|+.|.++-++..++
T Consensus 420 YlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 420 YLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred HHHHhcccccccccceEEEeecccC
Confidence 9999999999999999999987654
No 36
>KOG0339|consensus
Probab=99.97 E-value=1.4e-30 Score=251.57 Aligned_cols=277 Identities=21% Similarity=0.283 Sum_probs=216.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhh
Q psy10478 8 NDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIV 87 (451)
Q Consensus 8 ~~~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~ 87 (451)
.++|+..||.+..+.+.+...++. ..+++|.+..|....++ -...|+++||++|+..- .. ..
T Consensus 304 PTrela~Qi~~eaKkf~K~ygl~~--------v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~V---km-Ka-- 365 (731)
T KOG0339|consen 304 PTRELASQIFSEAKKFGKAYGLRV--------VAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMV---KM-KA-- 365 (731)
T ss_pred ccHHHHHHHHHHHHHhhhhccceE--------EEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHH---Hh-hc--
Confidence 456777777777777666666543 34456667666555443 24789999999998522 11 00
Q ss_pred hhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCC
Q psy10478 88 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 167 (451)
Q Consensus 88 ~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~ 167 (451)
..+.+++++|+|||+.|.+.| |.++.+.|... ..|+.
T Consensus 366 ---------------------------------------tn~~rvS~LV~DEadrmfdmG--fe~qVrSI~~h--irpdr 402 (731)
T KOG0339|consen 366 ---------------------------------------TNLSRVSYLVLDEADRMFDMG--FEPQVRSIKQH--IRPDR 402 (731)
T ss_pred ---------------------------------------ccceeeeEEEEechhhhhccc--cHHHHHHHHhh--cCCcc
Confidence 223579999999999999999 99999988543 35799
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCe-EEecCCCCCc--e--EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChh
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPN-IINTGFDRPN--L--YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKV 242 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~-~~~~~~~~~~--l--~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~ 242 (451)
|.++||||.+..+.......| .+|. ++.......| + ...+......++.+|...+.... ..+++|||+..+.
T Consensus 403 QtllFsaTf~~kIe~lard~L--~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~-S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 403 QTLLFSATFKKKIEKLARDIL--SDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFS-SEGKVLIFVTKKA 479 (731)
T ss_pred eEEEeeccchHHHHHHHHHHh--cCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhc-cCCcEEEEEeccC
Confidence 999999999887765433333 3443 3333333322 2 33344445667777776665543 6689999999999
Q ss_pred HHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhccc
Q psy10478 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRA 322 (451)
Q Consensus 243 ~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRa 322 (451)
.++.++..|.-.++++..+||+|.+.+|.+++..|+.++.+|||||++..+|+|+|+++.||+||+-.+++.|.||+||+
T Consensus 480 ~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 480 DAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred CHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEeecccHHHHhhhhc
Q psy10478 323 GRDGLSSVCYTFYKTADFTKNNMIFQ 348 (451)
Q Consensus 323 gR~g~~g~~i~l~~~~d~~~~~~~~~ 348 (451)
||.|..|.++.++++.|....-.+++
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred ccccccceeeEEechhhHHHhhHHHH
Confidence 99999999999999999886555543
No 37
>KOG0347|consensus
Probab=99.97 E-value=6.1e-31 Score=256.46 Aligned_cols=255 Identities=21% Similarity=0.298 Sum_probs=192.4
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSE 113 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 113 (451)
..+|.++.+.||....-.+.++ +...+|+++||++|..- .. .- +
T Consensus 289 ~t~i~v~si~GGLavqKQqRlL----~~~p~IVVATPGRlwel---i~---e~--------n------------------ 332 (731)
T KOG0347|consen 289 KTQIRVASITGGLAVQKQQRLL----NQRPDIVVATPGRLWEL---IE---ED--------N------------------ 332 (731)
T ss_pred ccCeEEEEeechhHHHHHHHHH----hcCCCEEEecchHHHHH---HH---hh--------h------------------
Confidence 4567788888888876544444 44789999999998642 11 10 0
Q ss_pred cccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhh--ccCCCCCEEEEEeeCChH------------
Q psy10478 114 LRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR--LPLPDVPILAVTATATPV------------ 179 (451)
Q Consensus 114 l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~--~~~~~~~~v~lSAT~~~~------------ 179 (451)
.++.++.++.++|+||||+|.+.|| |...-..|..+. ...+..|.+.||||++-.
T Consensus 333 ----------~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~ 401 (731)
T KOG0347|consen 333 ----------THLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKK 401 (731)
T ss_pred ----------hhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhcc
Confidence 0123446899999999999999996 655444343333 223578999999997642
Q ss_pred --------HHHHHHHhcCCCC-CeEEecCCCCCceEEEEEecchhHHHHHHHH-Hh------------hccCCCCcEEEE
Q psy10478 180 --------VIDDICTSLMLRD-PNIINTGFDRPNLYLAASVKQDDIMADLRKL-TN------------FENQFEGSTIIY 237 (451)
Q Consensus 180 --------~~~~i~~~l~l~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~-l~------------~~~~~~~~~iVF 237 (451)
..+.+++.+++.. |.++...... .....|.+- |. ......+++|||
T Consensus 402 ~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~------------~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF 469 (731)
T KOG0347|consen 402 DKEDELNAKIQHLMKKIGFRGKPKIIDLTPQS------------ATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVF 469 (731)
T ss_pred chhhhhhHHHHHHHHHhCccCCCeeEecCcch------------hHHHHHHHHhhcCCccccceeEEEEEeecCCceEEE
Confidence 2334555555553 3444432211 111111110 10 001267899999
Q ss_pred cCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHH
Q psy10478 238 CPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQ 317 (451)
Q Consensus 238 ~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Q 317 (451)
||+++.+..++-+|...++....+|+.|.+.+|.+.+++|++....||+|||+++||+|+|+|.+||||..|.+.+-|+|
T Consensus 470 ~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVH 549 (731)
T KOG0347|consen 470 CNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVH 549 (731)
T ss_pred echHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCcEEEEEeecccHHHHhhhh
Q psy10478 318 EIGRAGRDGLSSVCYTFYKTADFTKNNMIF 347 (451)
Q Consensus 318 r~GRagR~g~~g~~i~l~~~~d~~~~~~~~ 347 (451)
|.||++|++..|..++++.|.+...+.++.
T Consensus 550 RSGRTARA~~~Gvsvml~~P~e~~~~~KL~ 579 (731)
T KOG0347|consen 550 RSGRTARANSEGVSVMLCGPQEVGPLKKLC 579 (731)
T ss_pred cccccccccCCCeEEEEeChHHhHHHHHHH
Confidence 999999999999999999999987776554
No 38
>KOG0348|consensus
Probab=99.97 E-value=4.1e-31 Score=256.96 Aligned_cols=312 Identities=17% Similarity=0.198 Sum_probs=228.8
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc--------CCCeeEEEeCccccccchhhHhhhhhhh---hhhcc
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC--------DNCRQVVYMTPEYVTNNTSFLSRIPRIV---LIAID 92 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~--------~~~~~vl~~tPe~l~~~~~~~~~l~~~~---~~~~d 92 (451)
...++....+++.++-+-++||+|.++...+.+.++ ..+.=-||+.|.+-+..+ .++....+. .|.|.
T Consensus 165 kq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q-~y~~~qKLl~~~hWIVP 243 (708)
T KOG0348|consen 165 KQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQ-IYETVQKLLKPFHWIVP 243 (708)
T ss_pred hcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHH-HHHHHHHHhcCceEEee
Confidence 344555555888888999999999998777666544 223446788888888766 555554441 12222
Q ss_pred cceeccccCCCCcch----hhcccccccCCCCchhhhccc-----cCcccEEEEccccccccCCCCcHHHHHHHHHhhcc
Q psy10478 93 EAHCVSQWGHDFRPS----YRCLSELRLPLPDVPILFLSR-----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 163 (451)
Q Consensus 93 e~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~l~~-----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~ 163 (451)
. .-.|..-+.+ .+.-..+.++||++++..+.. +++++++|+||||.+++.| |...+..|..+...
T Consensus 244 g----~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLG--fekdit~Il~~v~~ 317 (708)
T KOG0348|consen 244 G----VLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELG--FEKDITQILKAVHS 317 (708)
T ss_pred c----eeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhcc--chhhHHHHHHHHhh
Confidence 2 2233332222 223356889999999998865 6789999999999999999 88888877655522
Q ss_pred -------C----CCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecC-----CC----------CC-------------c
Q psy10478 164 -------L----PDVPILAVTATATPVVIDDICTSLMLRDPNIINTG-----FD----------RP-------------N 204 (451)
Q Consensus 164 -------~----~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~-----~~----------~~-------------~ 204 (451)
. +..+-+++|||++..+.. ...+.+.+|..+... .+ .+ +
T Consensus 318 ~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeq 395 (708)
T KOG0348|consen 318 IQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQ 395 (708)
T ss_pred ccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHH
Confidence 1 135578999999988866 667778888877611 11 00 0
Q ss_pred --eEEEEEecchhHHHHHHH----HHhhccCCCCcEEEEcCChhHHHHHHHHHHHC----------------------CC
Q psy10478 205 --LYLAASVKQDDIMADLRK----LTNFENQFEGSTIIYCPTKVICEKVCDVLSRN----------------------GI 256 (451)
Q Consensus 205 --l~~~~~~~~~~~~~~L~~----~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~----------------------~~ 256 (451)
.+|.+.+.. -.+-.|.. ..+.. ...++|||..+.+.++.-+..|... +.
T Consensus 396 L~qry~vVPpK-LRLV~Laa~L~~~~k~~--~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~ 472 (708)
T KOG0348|consen 396 LLQRYTVVPPK-LRLVALAALLLNKVKFE--EKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDL 472 (708)
T ss_pred hhhceEecCCc-hhHHHHHHHHHHHhhhh--hhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcc
Confidence 123333222 11222333 33333 4568999999999999988888742 34
Q ss_pred CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 257 QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 257 ~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
++..+||+|++++|..++..|...+-.||.|||+++||+|+|+|++||.||+|.+.++|+||+||++|.|..|.+++|..
T Consensus 473 k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~ 552 (708)
T KOG0348|consen 473 KFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLL 552 (708)
T ss_pred eEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEec
Confidence 57789999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHhhhh
Q psy10478 337 TADFTKNNMIF 347 (451)
Q Consensus 337 ~~d~~~~~~~~ 347 (451)
|.+.++++.+.
T Consensus 553 P~Eaey~~~l~ 563 (708)
T KOG0348|consen 553 PSEAEYVNYLK 563 (708)
T ss_pred ccHHHHHHHHH
Confidence 99888766443
No 39
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=2.6e-30 Score=286.94 Aligned_cols=249 Identities=23% Similarity=0.256 Sum_probs=176.4
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR 115 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~ 115 (451)
.+.++..+|+++..++.... ....+||++|||++.... .....
T Consensus 77 ~i~V~vrtGDt~~~eR~rll----~~ppdILVTTPEsL~~LL--tsk~r------------------------------- 119 (1490)
T PRK09751 77 NLRVGIRTGDTPAQERSKLT----RNPPDILITTPESLYLML--TSRAR------------------------------- 119 (1490)
T ss_pred ceEEEEEECCCCHHHHHHHh----cCCCCEEEecHHHHHHHH--hhhhh-------------------------------
Confidence 45667778888877654433 335799999999986421 11100
Q ss_pred cCCCCchhhhccccCcccEEEEcccccccc--CCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCC
Q psy10478 116 LPLPDVPILFLSRIPRIVLIAIDEAHCVSQ--WGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193 (451)
Q Consensus 116 ~~~~~~~~~~l~~l~~l~~vViDEah~~~~--~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~ 193 (451)
..++++++|||||+|.+.. +|..+...+.+|..+. ..+.|+|++|||+++. +++.++++...+
T Consensus 120 -----------~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--~~~~QrIgLSATI~n~--eevA~~L~g~~p 184 (1490)
T PRK09751 120 -----------ETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--HTSAQRIGLSATVRSA--SDVAAFLGGDRP 184 (1490)
T ss_pred -----------hhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--CCCCeEEEEEeeCCCH--HHHHHHhcCCCC
Confidence 1135799999999999984 4666667777776543 2468999999999874 467888876655
Q ss_pred eEEecCCC-CC-ceEEEEEecchh--------------------HHHHHH-HHHhhccCCCCcEEEEcCChhHHHHHHHH
Q psy10478 194 NIINTGFD-RP-NLYLAASVKQDD--------------------IMADLR-KLTNFENQFEGSTIIYCPTKVICEKVCDV 250 (451)
Q Consensus 194 ~~~~~~~~-~~-~l~~~~~~~~~~--------------------~~~~L~-~~l~~~~~~~~~~iVF~~t~~~~~~l~~~ 250 (451)
..+..... ++ .+.+.+...... ....+. .++.. ...+.++||||||++.|+.++..
T Consensus 185 v~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~-i~~~~stLVFvNSR~~AE~La~~ 263 (1490)
T PRK09751 185 VTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDE-VLRHRSTIVFTNSRGLAEKLTAR 263 (1490)
T ss_pred EEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHH-HhcCCCEEEECCCHHHHHHHHHH
Confidence 44433222 22 222222111100 000111 12211 12568999999999999999999
Q ss_pred HHHCC---------------------------------CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccccc
Q psy10478 251 LSRNG---------------------------------IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDK 297 (451)
Q Consensus 251 L~~~~---------------------------------~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~ 297 (451)
|++.. ..+..|||+|++++|..+++.|++|++++||||+++++|||+
T Consensus 264 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDI 343 (1490)
T PRK09751 264 LNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDM 343 (1490)
T ss_pred HHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCc
Confidence 97641 125789999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHhcccCCC-CCCcEEEEEeec
Q psy10478 298 PDVRCVIHYGAPKDLSAYYQEIGRAGRD-GLSSVCYTFYKT 337 (451)
Q Consensus 298 p~v~~VI~~~~p~s~~~y~Qr~GRagR~-g~~g~~i~l~~~ 337 (451)
++|++||+++.|.++.+|+||+||+||. |..+.++++...
T Consensus 344 g~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~ 384 (1490)
T PRK09751 344 GAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT 384 (1490)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc
Confidence 9999999999999999999999999996 445666655443
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.97 E-value=4.4e-30 Score=280.28 Aligned_cols=249 Identities=21% Similarity=0.267 Sum_probs=168.5
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR 115 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~ 115 (451)
.+..+..+|+.+..+..... ....+|+++|||++.... ....+.
T Consensus 124 ~i~v~v~~Gdt~~~~r~~~l----~~~p~IlVtTPE~L~~ll-~~~~~~------------------------------- 167 (876)
T PRK13767 124 EIRVAIRTGDTSSYEKQKML----KKPPHILITTPESLAILL-NSPKFR------------------------------- 167 (876)
T ss_pred CeeEEEEcCCCCHHHHHHHH----hCCCCEEEecHHHHHHHh-cChhHH-------------------------------
Confidence 44566677777766544333 335799999999885311 000000
Q ss_pred cCCCCchhhhccccCcccEEEEccccccccC--CCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCC--
Q psy10478 116 LPLPDVPILFLSRIPRIVLIAIDEAHCVSQW--GHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR-- 191 (451)
Q Consensus 116 ~~~~~~~~~~l~~l~~l~~vViDEah~~~~~--g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~-- 191 (451)
..++++++|||||+|.+.+. |..+...+.++..+. .++.+++++|||+++. +.+..++...
T Consensus 168 -----------~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~~--~~va~~L~~~~~ 232 (876)
T PRK13767 168 -----------EKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEPL--EEVAKFLVGYED 232 (876)
T ss_pred -----------HHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCCH--HHHHHHhcCccc
Confidence 11257999999999999854 322333444443332 2467899999999763 3445555431
Q ss_pred ----CC-eEEecCCCCCceEEEEEe--------cchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC----
Q psy10478 192 ----DP-NIINTGFDRPNLYLAASV--------KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN---- 254 (451)
Q Consensus 192 ----~~-~~~~~~~~~~~l~~~~~~--------~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~---- 254 (451)
.+ .++.....++ ..+.+.. ........+...+......++++||||||++.|+.++..|.+.
T Consensus 233 ~~~~r~~~iv~~~~~k~-~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~ 311 (876)
T PRK13767 233 DGEPRDCEIVDARFVKP-FDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEE 311 (876)
T ss_pred cCCCCceEEEccCCCcc-ceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhh
Confidence 12 2222222221 1111110 0111222233333332225689999999999999999999873
Q ss_pred --CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCC-CCCcEE
Q psy10478 255 --GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRD-GLSSVC 331 (451)
Q Consensus 255 --~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~-g~~g~~ 331 (451)
+..+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+++.|.+..+|+||+||+||. |..+.+
T Consensus 312 ~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g 391 (876)
T PRK13767 312 YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKG 391 (876)
T ss_pred ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999987 444455
Q ss_pred EEEee
Q psy10478 332 YTFYK 336 (451)
Q Consensus 332 i~l~~ 336 (451)
+++..
T Consensus 392 ~ii~~ 396 (876)
T PRK13767 392 RIIVV 396 (876)
T ss_pred EEEEc
Confidence 55443
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=2e-29 Score=272.91 Aligned_cols=238 Identities=21% Similarity=0.215 Sum_probs=182.4
Q ss_pred hhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhccccccc
Q psy10478 37 LLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRL 116 (451)
Q Consensus 37 i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~ 116 (451)
+.+..++|..+..+.....+.+.+|+.+|||+||..+.. . +
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~-~--------v------------------------------ 569 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQK-D--------V------------------------------ 569 (926)
T ss_pred cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhC-C--------C------------------------------
Confidence 445667788888888888888889999999999953321 1 0
Q ss_pred CCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEE
Q psy10478 117 PLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196 (451)
Q Consensus 117 ~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~ 196 (451)
.+++++++||||+|++ |...+.. +....++.++++||||+.+.+.. ....+..++.++
T Consensus 570 -----------~f~~L~llVIDEahrf---gv~~~~~------L~~~~~~~~vL~~SATpiprtl~--~~l~g~~d~s~I 627 (926)
T TIGR00580 570 -----------KFKDLGLLIIDEEQRF---GVKQKEK------LKELRTSVDVLTLSATPIPRTLH--MSMSGIRDLSII 627 (926)
T ss_pred -----------CcccCCEEEeeccccc---chhHHHH------HHhcCCCCCEEEEecCCCHHHHH--HHHhcCCCcEEE
Confidence 1247999999999985 4222222 23334678999999999888765 344566677666
Q ss_pred ecC-CCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC--CCCeeeecCCCCHHHHHHH
Q psy10478 197 NTG-FDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN--GIQNRPYHAHISLKQRKEI 273 (451)
Q Consensus 197 ~~~-~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~--~~~v~~~h~~l~~~~R~~~ 273 (451)
... ..+.++...+...... .+...+......+++++|||++++.++.+++.|++. ++++..+||+|++++|.++
T Consensus 628 ~~~p~~R~~V~t~v~~~~~~---~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~i 704 (926)
T TIGR00580 628 ATPPEDRLPVRTFVMEYDPE---LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEV 704 (926)
T ss_pred ecCCCCccceEEEEEecCHH---HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Confidence 553 3344444333322221 122222222236789999999999999999999985 7889999999999999999
Q ss_pred HHHhhcCCceEEEEccccccccccCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCcEEEEEeecc
Q psy10478 274 HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK-DLSAYYQEIGRAGRDGLSSVCYTFYKTA 338 (451)
Q Consensus 274 ~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 338 (451)
+++|++|+++|||||+++++|||+|++++||++++|. +..+|+||+||+||.|+.|.|++++.+.
T Consensus 705 m~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 705 MLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999999999999999999999975 7889999999999999999999998653
No 42
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=8.7e-30 Score=267.26 Aligned_cols=306 Identities=20% Similarity=0.236 Sum_probs=228.0
Q ss_pred HHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCC-------CeeEEEeCccccccchhhHhhhhhhhhhhccc
Q psy10478 21 KRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDN-------CRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDE 93 (451)
Q Consensus 21 ~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~-------~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de 93 (451)
+-+...++....+.+.++++-++||+|.+....+++.+.+. ++.+||.||-+++++. ....|....-....+
T Consensus 25 ~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D-i~~rL~~~~~~~G~~ 103 (814)
T COG1201 25 PPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND-IRRRLEEPLRELGIE 103 (814)
T ss_pred HHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH-HHHHHHHHHHHcCCc
Confidence 33555666666789999999999999999887777765443 4899999999999987 555554331111111
Q ss_pred c--eeccccCCCCcchhhcccccccCCCCchhhhccc------cCcccEEEEcccccccc--CCCCcHHHHHHHHHhhcc
Q psy10478 94 A--HCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSR------IPRIVLIAIDEAHCVSQ--WGHDFRPSYRCLSELRLP 163 (451)
Q Consensus 94 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~------l~~l~~vViDEah~~~~--~g~~fr~~~~~l~~l~~~ 163 (451)
. .++....+.-+...++.+++++.||+.+...+.. |+++++|||||.|.+.. .|....-. +.++...
T Consensus 104 v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~---LeRL~~l 180 (814)
T COG1201 104 VAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALS---LERLREL 180 (814)
T ss_pred cceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhh---HHHHHhh
Confidence 1 1111111223344666699999999999888754 88999999999999864 35333333 3444444
Q ss_pred CCCCCEEEEEeeCChHHHHHHHHhcCCCC-C-eEEecCCCCCceEEEEEecc----------hhHHHHHHHHHhhccCCC
Q psy10478 164 LPDVPILAVTATATPVVIDDICTSLMLRD-P-NIINTGFDRPNLYLAASVKQ----------DDIMADLRKLTNFENQFE 231 (451)
Q Consensus 164 ~~~~~~v~lSAT~~~~~~~~i~~~l~l~~-~-~~~~~~~~~~~l~~~~~~~~----------~~~~~~L~~~l~~~~~~~ 231 (451)
-++.+.+++|||..+.. .+.++|.... + .++..+..++ ..+.+.... ......+.++++ ..
T Consensus 181 ~~~~qRIGLSATV~~~~--~varfL~g~~~~~~Iv~~~~~k~-~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~----~~ 253 (814)
T COG1201 181 AGDFQRIGLSATVGPPE--EVAKFLVGFGDPCEIVDVSAAKK-LEIKVISPVEDLIYDEELWAALYERIAELVK----KH 253 (814)
T ss_pred CcccEEEeehhccCCHH--HHHHHhcCCCCceEEEEcccCCc-ceEEEEecCCccccccchhHHHHHHHHHHHh----hc
Confidence 45889999999998654 6688887764 3 4454444433 222222211 223445555555 44
Q ss_pred CcEEEEcCChhHHHHHHHHHHHCC-CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSRNG-IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK 310 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~~~-~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~ 310 (451)
..+|||+||+..+|.++..|++.+ ..+..+||+++.+.|..++++|++|+++++|||+.++.|||+.+|+.||+++.|+
T Consensus 254 ~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~ 333 (814)
T COG1201 254 RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPK 333 (814)
T ss_pred CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcH
Confidence 599999999999999999999986 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCCC-CCCcEEEEEeec
Q psy10478 311 DLSAYYQEIGRAGRD-GLSSVCYTFYKT 337 (451)
Q Consensus 311 s~~~y~Qr~GRagR~-g~~g~~i~l~~~ 337 (451)
++..++||+||+|+. |..+.++++...
T Consensus 334 sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 334 SVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999964 667888888665
No 43
>KOG4284|consensus
Probab=99.97 E-value=7.5e-30 Score=252.60 Aligned_cols=269 Identities=17% Similarity=0.189 Sum_probs=206.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhh
Q psy10478 8 NDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIV 87 (451)
Q Consensus 8 ~~~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~ 87 (451)
.+|||..||+..+..+..- -.+.....+-||+..+.-...+ .+.+|+++||+++.. +.+.- -+
T Consensus 101 PTREiaVQI~~tv~~v~~s-------f~g~~csvfIGGT~~~~d~~rl-----k~~rIvIGtPGRi~q---L~el~-~~- 163 (980)
T KOG4284|consen 101 PTREIAVQIKETVRKVAPS-------FTGARCSVFIGGTAHKLDLIRL-----KQTRIVIGTPGRIAQ---LVELG-AM- 163 (980)
T ss_pred cchhhhhHHHHHHHHhccc-------ccCcceEEEecCchhhhhhhhh-----hhceEEecCchHHHH---HHHhc-CC-
Confidence 4688888888777654321 1122344445555554333333 346899999999986 22211 01
Q ss_pred hhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCC
Q psy10478 88 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 167 (451)
Q Consensus 88 ~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~ 167 (451)
..+.++++|+||||.+.+.+. |+..+..|.. ..+...
T Consensus 164 ----------------------------------------n~s~vrlfVLDEADkL~~t~s-fq~~In~ii~--slP~~r 200 (980)
T KOG4284|consen 164 ----------------------------------------NMSHVRLFVLDEADKLMDTES-FQDDINIIIN--SLPQIR 200 (980)
T ss_pred ----------------------------------------CccceeEEEeccHHhhhchhh-HHHHHHHHHH--hcchhh
Confidence 125799999999999998553 8888776632 223378
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCce----EEEE-Eecc-------hhHHHHHHHHHhhccCCCCcEE
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNL----YLAA-SVKQ-------DDIMADLRKLTNFENQFEGSTI 235 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l----~~~~-~~~~-------~~~~~~L~~~l~~~~~~~~~~i 235 (451)
|++++|||.+...-..+.+. |++|.+++.+...+.+ .|.+ .... ..+.+.|..+++.. +-.++|
T Consensus 201 Qv~a~SATYp~nLdn~Lsk~--mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~i--py~QAl 276 (980)
T KOG4284|consen 201 QVAAFSATYPRNLDNLLSKF--MRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSI--PYVQAL 276 (980)
T ss_pred eeeEEeccCchhHHHHHHHH--hcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhC--chHHHH
Confidence 89999999988776655554 5789888887777665 1222 2111 33566677777665 778999
Q ss_pred EEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHH
Q psy10478 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAY 315 (451)
Q Consensus 236 VF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y 315 (451)
|||+....|+.++..|...|+.+.++.|.|++.+|..+++.+++-.++|||+||..+||||-++|++|||.|+|.+-++|
T Consensus 277 VF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY 356 (980)
T KOG4284|consen 277 VFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETY 356 (980)
T ss_pred hhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCcEEEEEeecccH
Q psy10478 316 YQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 316 ~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
.||+|||||.|..|.++.|+..+..
T Consensus 357 ~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 357 FHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999876543
No 44
>KOG0344|consensus
Probab=99.96 E-value=8.2e-30 Score=251.69 Aligned_cols=315 Identities=20% Similarity=0.203 Sum_probs=235.2
Q ss_pred HHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCC-------eeEEEeCccccccchhhHhhhhhhhh--hhcccce
Q psy10478 25 KYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNC-------RQVVYMTPEYVTNNTSFLSRIPRIVL--IAIDEAH 95 (451)
Q Consensus 25 ~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~-------~~vl~~tPe~l~~~~~~~~~l~~~~~--~~~de~~ 95 (451)
.+++.-...++.+..+.++||.+.+....++..++... .+.+|+.|.+.+..+ .+.....++. ..-+.++
T Consensus 165 ~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Q-i~re~~k~~~~~~t~~~a~ 243 (593)
T KOG0344|consen 165 QAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQ-IYREMRKYSIDEGTSLRAA 243 (593)
T ss_pred hhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHH-HHHHHHhcCCCCCCchhhh
Confidence 44555566788999999999999998888777766444 899999999999877 4333333321 1111111
Q ss_pred ecc---ccCCCCcchhhcccccccCCCCchhhhcc------ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCC
Q psy10478 96 CVS---QWGHDFRPSYRCLSELRLPLPDVPILFLS------RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 166 (451)
Q Consensus 96 ~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~------~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~ 166 (451)
..+ .........-....++.+.||++..-.+. .+.++.++|+||||.+.+. ..|..++..|...... |+
T Consensus 244 ~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~ 321 (593)
T KOG0344|consen 244 QFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP-EFFVEQLADIYSACQS-PD 321 (593)
T ss_pred hcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cc
Confidence 110 00112233344456788899998655443 3578999999999999876 2377777776554433 77
Q ss_pred CCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCC-----CCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCCh
Q psy10478 167 VPILAVTATATPVVIDDICTSLMLRDPNIINTGFD-----RPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTK 241 (451)
Q Consensus 167 ~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~ 241 (451)
+.+-+||||.+..+.+ +++.. +.++..+..+.. .-...+.....+..++-.+.+++... -..+++||+.+.
T Consensus 322 i~~a~FSat~~~~VEE-~~~~i-~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~ 397 (593)
T KOG0344|consen 322 IRVALFSATISVYVEE-WAELI-KSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSK 397 (593)
T ss_pred hhhhhhhccccHHHHH-HHHHh-hccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecH
Confidence 8888999999887755 33332 334443333321 11112223334456777888888876 778999999999
Q ss_pred hHHHHHHHHH-HHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhc
Q psy10478 242 VICEKVCDVL-SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIG 320 (451)
Q Consensus 242 ~~~~~l~~~L-~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~G 320 (451)
+.|.+|...| .-.++.+.++||..++.+|.+++++|+.|+++||+||++++||+|+.+|+.||+||+|.+..+|+||+|
T Consensus 398 eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIG 477 (593)
T KOG0344|consen 398 ERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIG 477 (593)
T ss_pred HHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhh
Confidence 9999999999 555899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEEeecccHHHHhhh
Q psy10478 321 RAGRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 321 RagR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
|+||.|+.|.++.||+.+|....+.+
T Consensus 478 RtgRag~~g~Aitfytd~d~~~ir~i 503 (593)
T KOG0344|consen 478 RTGRAGRSGKAITFYTDQDMPRIRSI 503 (593)
T ss_pred ccCCCCCCcceEEEeccccchhhhhH
Confidence 99999999999999999998876643
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=2.9e-29 Score=271.15 Aligned_cols=292 Identities=19% Similarity=0.260 Sum_probs=203.5
Q ss_pred hhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcc--h
Q psy10478 30 RTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRP--S 107 (451)
Q Consensus 30 ~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~--~ 107 (451)
...+.+.+.++-++||+|......+++.+..+ .++||++|.+.+..+ ....+..+.-..+ .+. .++.++.. .
T Consensus 36 ~~~g~nvlv~APTGSGKTlia~lail~~l~~~-~kal~i~P~raLa~q-~~~~~~~~~~~g~---~v~-~~tGd~~~~~~ 109 (737)
T PRK02362 36 LLDGKNLLAAIPTASGKTLIAELAMLKAIARG-GKALYIVPLRALASE-KFEEFERFEELGV---RVG-ISTGDYDSRDE 109 (737)
T ss_pred HhCCCcEEEECCCcchHHHHHHHHHHHHHhcC-CcEEEEeChHHHHHH-HHHHHHHhhcCCC---EEE-EEeCCcCcccc
Confidence 44567888999999999988766666665543 589999999999877 3333333311001 111 11111111 1
Q ss_pred hhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHH-HHhhccCCCCCEEEEEeeCChHHHH
Q psy10478 108 YRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCL-SELRLPLPDVPILAVTATATPVVID 182 (451)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l-~~l~~~~~~~~~v~lSAT~~~~~~~ 182 (451)
.....++.+.||++....+.. +.+++++||||+|.+.+.+ +.+.+..+ ..++...++.+++++|||+++. +
T Consensus 110 ~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~ 185 (737)
T PRK02362 110 WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--D 185 (737)
T ss_pred ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--H
Confidence 223367889999988665542 5679999999999998744 55666543 4455556789999999999764 3
Q ss_pred HHHHhcCCCCCeEEecCCCCC-----------ceEEEEEe------cchhHHHHHHHHHhhccCCCCcEEEEcCChhHHH
Q psy10478 183 DICTSLMLRDPNIINTGFDRP-----------NLYLAASV------KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICE 245 (451)
Q Consensus 183 ~i~~~l~l~~~~~~~~~~~~~-----------~l~~~~~~------~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~ 245 (451)
++..+++... +. +..|| .+.+.... ........+...+ ..++++||||+|++.|+
T Consensus 186 ~la~wl~~~~---~~-~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~ 257 (737)
T PRK02362 186 ELADWLDAEL---VD-SEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL----EEGGQCLVFVSSRRNAE 257 (737)
T ss_pred HHHHHhCCCc---cc-CCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH----HcCCCeEEEEeCHHHHH
Confidence 6677765321 00 00111 00000000 0011222233322 26789999999999999
Q ss_pred HHHHHHHHC------------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 246 KVCDVLSRN------------------------------------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 246 ~l~~~L~~~------------------------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+++.|... ..++.++||+|++.+|..+++.|++|.++|||||+
T Consensus 258 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~ 337 (737)
T PRK02362 258 GFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTP 337 (737)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEech
Confidence 998888643 13688999999999999999999999999999999
Q ss_pred ccccccccCCccEEEE----eC-----CCCCHHHHHHHhcccCCCCCC--cEEEEEeeccc
Q psy10478 290 AFGMGIDKPDVRCVIH----YG-----APKDLSAYYQEIGRAGRDGLS--SVCYTFYKTAD 339 (451)
Q Consensus 290 ~~~~GiD~p~v~~VI~----~~-----~p~s~~~y~Qr~GRagR~g~~--g~~i~l~~~~d 339 (451)
++++|+|+|++++||+ |+ .|.+..+|.||+|||||.|.. |.+++++.+.+
T Consensus 338 tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 338 TLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred hhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 9999999999999997 65 688999999999999999864 89999987653
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=2.6e-28 Score=260.33 Aligned_cols=237 Identities=19% Similarity=0.249 Sum_probs=178.2
Q ss_pred hhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhccccccc
Q psy10478 37 LLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRL 116 (451)
Q Consensus 37 i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~ 116 (451)
+.++.++|+.+..++...++.+.+|+.+|+++||..+....
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v--------------------------------------- 379 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV--------------------------------------- 379 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc---------------------------------------
Confidence 55788899999888888888999999999999998775321
Q ss_pred CCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEE
Q psy10478 117 PLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196 (451)
Q Consensus 117 ~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~ 196 (451)
.+.+++++||||+|++ |...+..+ .......++++||||+.+.... ....+..+...+
T Consensus 380 -----------~~~~l~lvVIDE~Hrf---g~~qr~~l------~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i 437 (681)
T PRK10917 380 -----------EFHNLGLVIIDEQHRF---GVEQRLAL------REKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVI 437 (681)
T ss_pred -----------hhcccceEEEechhhh---hHHHHHHH------HhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEE
Confidence 1247999999999986 32233322 2233468899999999887654 223333333333
Q ss_pred ec-CCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCCh--------hHHHHHHHHHHHC--CCCeeeecCCC
Q psy10478 197 NT-GFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTK--------VICEKVCDVLSRN--GIQNRPYHAHI 265 (451)
Q Consensus 197 ~~-~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~--------~~~~~l~~~L~~~--~~~v~~~h~~l 265 (451)
.. +..+.++...+.... ....+...+......+.+++|||+++ ..++.+++.|.+. ++.+..+||+|
T Consensus 438 ~~~p~~r~~i~~~~~~~~--~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m 515 (681)
T PRK10917 438 DELPPGRKPITTVVIPDS--RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRM 515 (681)
T ss_pred ecCCCCCCCcEEEEeCcc--cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 32 333444443333222 22233333333333788999999964 3456778888766 57899999999
Q ss_pred CHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 266 SLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK-DLSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 266 ~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
++++|.+++++|++|+++|||||+++++|+|+|++++||+++.|. +.+.|.|++||+||.|.+|.|+++++
T Consensus 516 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 516 KPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999999999999999999999999999999999997 68899999999999999999999985
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=2e-28 Score=270.36 Aligned_cols=236 Identities=17% Similarity=0.171 Sum_probs=178.1
Q ss_pred hhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhccccccc
Q psy10478 37 LLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRL 116 (451)
Q Consensus 37 i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~ 116 (451)
+.+..++|+.+..+...+++.+.+|..+|||+||+.+....
T Consensus 678 v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v--------------------------------------- 718 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDV--------------------------------------- 718 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCC---------------------------------------
Confidence 34556778888888888888888899999999996442110
Q ss_pred CCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEE
Q psy10478 117 PLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196 (451)
Q Consensus 117 ~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~ 196 (451)
.+++++++||||+|++ |..+. ..+....++.++++||||+.+.+... ...++.++..+
T Consensus 719 -----------~~~~L~lLVIDEahrf---G~~~~------e~lk~l~~~~qvLl~SATpiprtl~l--~~~gl~d~~~I 776 (1147)
T PRK10689 719 -----------KWKDLGLLIVDEEHRF---GVRHK------ERIKAMRADVDILTLTATPIPRTLNM--AMSGMRDLSII 776 (1147)
T ss_pred -----------CHhhCCEEEEechhhc---chhHH------HHHHhcCCCCcEEEEcCCCCHHHHHH--HHhhCCCcEEE
Confidence 0147999999999996 42221 22334456899999999999888653 33456677777
Q ss_pred ecCCC-CCceEEEEEecch-hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC--CCCeeeecCCCCHHHHHH
Q psy10478 197 NTGFD-RPNLYLAASVKQD-DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN--GIQNRPYHAHISLKQRKE 272 (451)
Q Consensus 197 ~~~~~-~~~l~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~--~~~v~~~h~~l~~~~R~~ 272 (451)
..+.. +..+...+..... .....+...+ ..+++++||||+++.++.+++.|.+. +..+..+||+|++++|.+
T Consensus 777 ~~~p~~r~~v~~~~~~~~~~~~k~~il~el----~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~ 852 (1147)
T PRK10689 777 ATPPARRLAVKTFVREYDSLVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 (1147)
T ss_pred ecCCCCCCCceEEEEecCcHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHH
Confidence 65433 3333322222221 1112222222 25689999999999999999999987 788999999999999999
Q ss_pred HHHHhhcCCceEEEEccccccccccCCccEEEEeCCC-CCHHHHHHHhcccCCCCCCcEEEEEeec
Q psy10478 273 IHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP-KDLSAYYQEIGRAGRDGLSSVCYTFYKT 337 (451)
Q Consensus 273 ~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p-~s~~~y~Qr~GRagR~g~~g~~i~l~~~ 337 (451)
++.+|++|+++|||||+++++|+|+|++++||..+.. .+..+|+|++||+||.|+.|.|++++.+
T Consensus 853 im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred HHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999999999999999999999999999965543 3677899999999999999999999864
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=1.9e-28 Score=259.64 Aligned_cols=241 Identities=19% Similarity=0.200 Sum_probs=176.2
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR 115 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~ 115 (451)
++.++.++|+.+..++...++.+.+|+.+|+++||..+....
T Consensus 312 gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~-------------------------------------- 353 (630)
T TIGR00643 312 GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV-------------------------------------- 353 (630)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc--------------------------------------
Confidence 355778889988888888888899999999999998765321
Q ss_pred cCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeE
Q psy10478 116 LPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNI 195 (451)
Q Consensus 116 ~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~ 195 (451)
.+.+++++||||+|++ |...|..+... .......++++||||+.+..... ...+.-+...
T Consensus 354 ------------~~~~l~lvVIDEaH~f---g~~qr~~l~~~---~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~ 413 (630)
T TIGR00643 354 ------------EFKRLALVIIDEQHRF---GVEQRKKLREK---GQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSI 413 (630)
T ss_pred ------------cccccceEEEechhhc---cHHHHHHHHHh---cccCCCCCEEEEeCCCCcHHHHH--HhcCCcceee
Confidence 1147999999999985 33233333221 11112678999999988766442 2222112222
Q ss_pred E-ecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCCh--------hHHHHHHHHHHHC--CCCeeeecCC
Q psy10478 196 I-NTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTK--------VICEKVCDVLSRN--GIQNRPYHAH 264 (451)
Q Consensus 196 ~-~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~--------~~~~~l~~~L~~~--~~~v~~~h~~ 264 (451)
+ ..+..+..+...+.... . ...+...+......+.+++|||+++ ..++.+++.|.+. ++.+..+||+
T Consensus 414 i~~~p~~r~~i~~~~~~~~-~-~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~ 491 (630)
T TIGR00643 414 IDELPPGRKPITTVLIKHD-E-KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGR 491 (630)
T ss_pred eccCCCCCCceEEEEeCcc-h-HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 2 22333444443333222 1 2334444444333678999999976 4566777778764 6789999999
Q ss_pred CCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 265 ISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK-DLSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 265 l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
|++++|..+++.|++|+.+|||||+++++|||+|++++||+++.|. +.+.|.|++||+||.|.+|.|++++.
T Consensus 492 m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 492 MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999999999999999999999999999999987 78899999999999999999999983
No 49
>KOG0327|consensus
Probab=99.96 E-value=1.2e-28 Score=232.39 Aligned_cols=207 Identities=24% Similarity=0.371 Sum_probs=175.2
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCce----
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNL---- 205 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l---- 205 (451)
..+.++|+|||+.++..| |+..+..+ +....++.|++++|||.++++.. ...-.+.+|..+....+...+
T Consensus 168 ~~iKmfvlDEaDEmLs~g--fkdqI~~i--f~~lp~~vQv~l~SAT~p~~vl~--vt~~f~~~pv~i~vkk~~ltl~gik 241 (397)
T KOG0327|consen 168 DGIKMFVLDEADEMLSRG--FKDQIYDI--FQELPSDVQVVLLSATMPSDVLE--VTKKFMREPVRILVKKDELTLEGIK 241 (397)
T ss_pred cceeEEeecchHhhhccc--hHHHHHHH--HHHcCcchhheeecccCcHHHHH--HHHHhccCceEEEecchhhhhhhee
Confidence 369999999999999877 99998887 44446689999999999999876 333346788777665544322
Q ss_pred EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEE
Q psy10478 206 YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVV 285 (451)
Q Consensus 206 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iL 285 (451)
.+.+....+.++.-|..+.+ .-.+.+|||||+..+..+..+|..++..+..+||+|.+.+|..+...|++|..+||
T Consensus 242 q~~i~v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvl 317 (397)
T KOG0327|consen 242 QFYINVEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVL 317 (397)
T ss_pred eeeeeccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEE
Confidence 22222233457777777766 45789999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhh
Q psy10478 286 VATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 286 VaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
|.|+.+++|+|+.++..||+|++|...+.|.||+||+||.|.+|.++.++...|...++.+
T Consensus 318 Ittdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~i 378 (397)
T KOG0327|consen 318 ITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDI 378 (397)
T ss_pred eeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhH
Confidence 9999999999999999999999999999999999999999999999999998877766543
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=99.96 E-value=1.5e-28 Score=264.87 Aligned_cols=302 Identities=17% Similarity=0.165 Sum_probs=201.8
Q ss_pred hhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhh--hcccceeccccCCCCcch
Q psy10478 30 RTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLI--AIDEAHCVSQWGHDFRPS 107 (451)
Q Consensus 30 ~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~--~~de~~~~~~~~~~~~~~ 107 (451)
...+.+.+.++-++||+|......+++.+...+.++||++|.+.+..+ ....+..+.-. .+...+ +.... ...
T Consensus 36 ~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q-~~~~~~~~~~~g~~v~~~~--Gd~~~--~~~ 110 (720)
T PRK00254 36 VLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEE-KYREFKDWEKLGLRVAMTT--GDYDS--TDE 110 (720)
T ss_pred HhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHH-HHHHHHHHhhcCCEEEEEe--CCCCC--chh
Confidence 445678888999999999887666666655556799999999998776 33333322100 011111 11111 111
Q ss_pred hhcccccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHH
Q psy10478 108 YRCLSELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDD 183 (451)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~ 183 (451)
+....++++.||+.....+. .++++++|||||+|.+.+++ +.+.+..+.. ...++.+++++|||+++. .+
T Consensus 111 ~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~--rg~~le~il~--~l~~~~qiI~lSATl~n~--~~ 184 (720)
T PRK00254 111 WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYD--RGATLEMILT--HMLGRAQILGLSATVGNA--EE 184 (720)
T ss_pred hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCcc--chHHHHHHHH--hcCcCCcEEEEEccCCCH--HH
Confidence 22346788999988766654 25689999999999998765 4455555422 223578999999999763 46
Q ss_pred HHHhcCCCCCeEEecCCCCCc-eEEEEE------ecc---hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHH
Q psy10478 184 ICTSLMLRDPNIINTGFDRPN-LYLAAS------VKQ---DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR 253 (451)
Q Consensus 184 i~~~l~l~~~~~~~~~~~~~~-l~~~~~------~~~---~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~ 253 (451)
+..+++... + .+..+|. +...+. ... ......+...+......++++||||+|++.|+.++..|.+
T Consensus 185 la~wl~~~~---~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~ 260 (720)
T PRK00254 185 LAEWLNAEL---V-VSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAK 260 (720)
T ss_pred HHHHhCCcc---c-cCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHH
Confidence 677776431 1 1112221 100000 000 0001112222222222578999999999999988766642
Q ss_pred C---------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCc
Q psy10478 254 N---------------------------------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDV 300 (451)
Q Consensus 254 ~---------------------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v 300 (451)
. ..++.+|||+|++++|..+++.|++|.++|||||+++++|+|+|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~ 340 (720)
T PRK00254 261 KIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAF 340 (720)
T ss_pred HHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCce
Confidence 1 2358999999999999999999999999999999999999999999
Q ss_pred cEEEE-------eCCCC-CHHHHHHHhcccCCCC--CCcEEEEEeecccH-HHHhhh
Q psy10478 301 RCVIH-------YGAPK-DLSAYYQEIGRAGRDG--LSSVCYTFYKTADF-TKNNMI 346 (451)
Q Consensus 301 ~~VI~-------~~~p~-s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~-~~~~~~ 346 (451)
++||. ++.|. +..+|.||+|||||.| ..|.++++..+.+. ..++.+
T Consensus 341 ~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~ 397 (720)
T PRK00254 341 RVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERY 397 (720)
T ss_pred EEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHH
Confidence 99994 45544 6789999999999975 56999999876552 334444
No 51
>KOG0350|consensus
Probab=99.96 E-value=1.1e-28 Score=238.58 Aligned_cols=307 Identities=18% Similarity=0.201 Sum_probs=220.4
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCC---CeeEEEeCccccccchhhHhhhhhhhhhhccccee-cccc--CCCCcc
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDN---CRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHC-VSQW--GHDFRP 106 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~---~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~-~~~~--~~~~~~ 106 (451)
.++--+++.+|||+|.+....+.+.+... ..+-|++.|.+.+..+ ....+..+ .+.+-+ ...| .+.++.
T Consensus 183 ~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q-V~~~f~~~----~~~tgL~V~~~sgq~sl~~ 257 (620)
T KOG0350|consen 183 PRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ-VYDTFKRL----NSGTGLAVCSLSGQNSLED 257 (620)
T ss_pred CCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH-HHHHHHHh----ccCCceEEEecccccchHH
Confidence 34555688899999999988887765433 5789999999998877 55555443 011111 1222 233544
Q ss_pred hhhcc--------cccccCCCCchhhhccc-----cCcccEEEEccccccccCCCCcHHHHHHHHHh-------------
Q psy10478 107 SYRCL--------SELRLPLPDVPILFLSR-----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSEL------------- 160 (451)
Q Consensus 107 ~~~~~--------~~l~~~~~~~~~~~l~~-----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l------------- 160 (451)
...++ .+++++||+++..++.. |++++++||||||++++.. |......+..+
T Consensus 258 E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qs--fQ~Wl~~v~~~~~~~k~~~~~~ni 335 (620)
T KOG0350|consen 258 EARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQS--FQEWLDTVMSLCKTMKRVACLDNI 335 (620)
T ss_pred HHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHH--HHHHHHHHHHHhCCchhhcChhhh
Confidence 43333 48999999999999974 7889999999999998532 32222111111
Q ss_pred ---------------hcc----CCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCC------CCc--eEEEEEecc
Q psy10478 161 ---------------RLP----LPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFD------RPN--LYLAASVKQ 213 (451)
Q Consensus 161 ---------------~~~----~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~------~~~--l~~~~~~~~ 213 (451)
... ++....+.+|||++..-.. ...+.+..|.++.+... -|. -++.+....
T Consensus 336 i~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~K--l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~ 413 (620)
T KOG0350|consen 336 IRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSK--LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP 413 (620)
T ss_pred hhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHH--HhhhhcCCCceEEeecccceeeecChhhhhceeeccc
Confidence 111 1222357888888665533 55566667755433210 111 122222222
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHH----HCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLS----RNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~----~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
..+.-.+..++... ...++|+|+++.+.+..++..|+ +...++..|.|+++...|.+.++.|..|++++|||||
T Consensus 414 ~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD 491 (620)
T KOG0350|consen 414 KFKPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSD 491 (620)
T ss_pred ccchHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehh
Confidence 23333455566554 78899999999999999999888 3356788899999999999999999999999999999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhhcCC
Q psy10478 290 AFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPN 350 (451)
Q Consensus 290 ~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~~~~ 350 (451)
+++||||+.+|+.||+||+|.+..+|+||+||+||+|+.|.|+.+....+...+.++++..
T Consensus 492 ~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 492 ALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred hhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988887777654
No 52
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=1.7e-27 Score=255.36 Aligned_cols=300 Identities=16% Similarity=0.168 Sum_probs=202.9
Q ss_pred hcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhh-hhhhhcccceeccccCCCCcchhhc
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPR-IVLIAIDEAHCVSQWGHDFRPSYRC 110 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~-~~~~~~de~~~~~~~~~~~~~~~~~ 110 (451)
.+...++.+-++||+|..--..+++... ...+|+++.|.+++..+ ....+.. ++. .+. ...+.... +......
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~q-iA~rva~~~~~-~~g-~~VGy~vr--~~~~~s~ 89 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARS-AAQRLASQLGE-AVG-QTVGYRVR--GENKVSR 89 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHH-HHHHHHHHhCC-CcC-cEEEEEEc--cccccCC
Confidence 3567788899999999886655555543 23589999999998655 3333321 110 000 01111111 1111223
Q ss_pred ccccccCCCCchhhhccc---cCcccEEEEccccc-cccCCCCcHHHH-HHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 111 LSELRLPLPDVPILFLSR---IPRIVLIAIDEAHC-VSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 111 ~~~l~~~~~~~~~~~l~~---l~~l~~vViDEah~-~~~~g~~fr~~~-~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
...+...|++..+..+.. ++++++|||||+|. .++. +|--.+ ..+.. ...++.++++||||++.... .
T Consensus 90 ~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~ll~~i~~--~lr~dlqlIlmSATl~~~~l---~ 162 (819)
T TIGR01970 90 RTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDA--DLGLALALDVQS--SLREDLKILAMSATLDGERL---S 162 (819)
T ss_pred CCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhcc--chHHHHHHHHHH--hcCCCceEEEEeCCCCHHHH---H
Confidence 356888899988776643 77899999999996 3332 232222 22211 12357899999999987653 3
Q ss_pred HhcCCCCCeEEecCCC-CC-ceEEEEEecchhHH----HHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHH---CCC
Q psy10478 186 TSLMLRDPNIINTGFD-RP-NLYLAASVKQDDIM----ADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR---NGI 256 (451)
Q Consensus 186 ~~l~l~~~~~~~~~~~-~~-~l~~~~~~~~~~~~----~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~---~~~ 256 (451)
+.++ ++.++..... .| ..+|.......... ..+..++.. ..+++|||++++++++.+++.|.+ .++
T Consensus 163 ~~l~--~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~---~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~ 237 (819)
T TIGR01970 163 SLLP--DAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS---ETGSILVFLPGQAEIRRVQEQLAERLDSDV 237 (819)
T ss_pred HHcC--CCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHh---cCCcEEEEECCHHHHHHHHHHHHhhcCCCc
Confidence 3332 3333332211 12 12222111111111 223333332 468899999999999999999987 378
Q ss_pred CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC------------------CHHHHHHH
Q psy10478 257 QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK------------------DLSAYYQE 318 (451)
Q Consensus 257 ~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Qr 318 (451)
.+..+||+|++++|.++++.|.+|+.+|||||+++++|||+|+|++||++|.|+ |.++|.||
T Consensus 238 ~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR 317 (819)
T TIGR01970 238 LICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQR 317 (819)
T ss_pred EEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhh
Confidence 899999999999999999999999999999999999999999999999999885 45679999
Q ss_pred hcccCCCCCCcEEEEEeecccHHHHhhhhcCC
Q psy10478 319 IGRAGRDGLSSVCYTFYKTADFTKNNMIFQPN 350 (451)
Q Consensus 319 ~GRagR~g~~g~~i~l~~~~d~~~~~~~~~~~ 350 (451)
+|||||. .+|.|+.+|+.++...+..+...+
T Consensus 318 ~GRAGR~-~~G~cyrL~t~~~~~~l~~~~~PE 348 (819)
T TIGR01970 318 AGRAGRL-EPGVCYRLWSEEQHQRLPAQDEPE 348 (819)
T ss_pred hhhcCCC-CCCEEEEeCCHHHHHhhhcCCCcc
Confidence 9999999 699999999998877665544443
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=99.95 E-value=1.7e-27 Score=255.58 Aligned_cols=304 Identities=19% Similarity=0.239 Sum_probs=200.0
Q ss_pred hhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccC-CCCcchhh
Q psy10478 31 TCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWG-HDFRPSYR 109 (451)
Q Consensus 31 ~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~-~~~~~~~~ 109 (451)
..+.+.++++-++||+|......+.+.+..+ .+++|++|.+.+..+ ..+.+..+.-.. .......| .+..+...
T Consensus 35 ~~~~nvlv~apTGSGKTl~a~lail~~l~~~-~k~v~i~P~raLa~q-~~~~~~~l~~~g---~~v~~~~G~~~~~~~~~ 109 (674)
T PRK01172 35 RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-LKSIYIVPLRSLAME-KYEELSRLRSLG---MRVKISIGDYDDPPDFI 109 (674)
T ss_pred hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-CcEEEEechHHHHHH-HHHHHHHHhhcC---CeEEEEeCCCCCChhhh
Confidence 4567788899999999986555555555444 589999999988766 333333221000 01111111 11111222
Q ss_pred cccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHH-HhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 110 CLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLS-ELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 110 ~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~-~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
...++++.||++....+.. +.++++|||||+|++.+.+ +.+.+..+. .++...++.+++++|||+++. .++
T Consensus 110 ~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~l 185 (674)
T PRK01172 110 KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NEL 185 (674)
T ss_pred ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHH
Confidence 3467888999877655432 5679999999999998654 445555432 233344688999999999764 467
Q ss_pred HHhcCCCCCeEEecCCCCC-ceEEEEEec-------chhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC--
Q psy10478 185 CTSLMLRDPNIINTGFDRP-NLYLAASVK-------QDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN-- 254 (451)
Q Consensus 185 ~~~l~l~~~~~~~~~~~~~-~l~~~~~~~-------~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~-- 254 (451)
.++++... +... .+| .+...+... .......+..++......++++||||+|++.++.++..|.+.
T Consensus 186 a~wl~~~~---~~~~-~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~ 261 (674)
T PRK01172 186 AQWLNASL---IKSN-FRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFP 261 (674)
T ss_pred HHHhCCCc---cCCC-CCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhh
Confidence 77775321 1111 121 111111100 000011123333333336789999999999999999988653
Q ss_pred -----------------------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCC---
Q psy10478 255 -----------------------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA--- 308 (451)
Q Consensus 255 -----------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~--- 308 (451)
..++..+||+|++++|..+++.|++|.++|||||+++++|+|+|+..+|| .+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~ 340 (674)
T PRK01172 262 EFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRY 340 (674)
T ss_pred hcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEe
Confidence 12478899999999999999999999999999999999999999865554 332
Q ss_pred ------CCCHHHHHHHhcccCCCCC--CcEEEEEeecc-cHHHHhhhhc
Q psy10478 309 ------PKDLSAYYQEIGRAGRDGL--SSVCYTFYKTA-DFTKNNMIFQ 348 (451)
Q Consensus 309 ------p~s~~~y~Qr~GRagR~g~--~g~~i~l~~~~-d~~~~~~~~~ 348 (451)
|.+..+|.||+|||||.|. .|.+++++... +...++.++.
T Consensus 341 ~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~ 389 (674)
T PRK01172 341 GNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLS 389 (674)
T ss_pred CCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHc
Confidence 4588999999999999984 57788776544 3566666663
No 54
>KOG0337|consensus
Probab=99.95 E-value=1.3e-28 Score=233.50 Aligned_cols=312 Identities=18% Similarity=0.164 Sum_probs=242.6
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCC---eeEEEeCccccccchhhHhhhhhhhhhhcccceeccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNC---RQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQ 99 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~---~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~ 99 (451)
+++-+++...++..+.-+.++|+++.+......+.++.+. .+-++++|.+-+..+ ......+++.- -...+...
T Consensus 48 qRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~q-tlkvvkdlgrg--t~lr~s~~ 124 (529)
T KOG0337|consen 48 QRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQ-TLKVVKDLGRG--TKLRQSLL 124 (529)
T ss_pred hcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHH-HHHHHHHhccc--cchhhhhh
Confidence 4555677777788888889999999999888888877666 899999999887655 44444333110 00011112
Q ss_pred cC-CCCcchhhcc---cccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEE
Q psy10478 100 WG-HDFRPSYRCL---SELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILA 171 (451)
Q Consensus 100 ~~-~~~~~~~~~~---~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~ 171 (451)
.| +....-|..+ ++++.++|++..-.... |+.+.+||+|||+.+.++| |.+.+.++ +.....+.|.++
T Consensus 125 ~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemg--fqeql~e~--l~rl~~~~QTll 200 (529)
T KOG0337|consen 125 VGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMG--FQEQLHEI--LSRLPESRQTLL 200 (529)
T ss_pred cccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhh--hHHHHHHH--HHhCCCcceEEE
Confidence 22 2244445555 78899999988654432 5789999999999999988 88888776 334445789999
Q ss_pred EEeeCChHHHHHHHHhcCCCCCeEEecCCCC---CceEEEE-EecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHH
Q psy10478 172 VTATATPVVIDDICTSLMLRDPNIINTGFDR---PNLYLAA-SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKV 247 (451)
Q Consensus 172 lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~---~~l~~~~-~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l 247 (451)
||||+|....+ ...-|+.+|..++...+. +.+.... .....++...|..++.... ...+++|||.|+.+++.+
T Consensus 201 fSatlp~~lv~--fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~-~~~~t~vf~~tk~hve~~ 277 (529)
T KOG0337|consen 201 FSATLPRDLVD--FAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRI-KDKQTIVFVATKHHVEYV 277 (529)
T ss_pred EeccCchhhHH--HHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccc-cccceeEEecccchHHHH
Confidence 99999988777 556688899887744322 1222211 1223566777777776543 356899999999999999
Q ss_pred HHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCC
Q psy10478 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 248 ~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 327 (451)
...|+..|+.+..++|.|+++-|.....+|..++..++|.|++++||+|+|-.+.||+||+|.+...|+||+||+.|.|+
T Consensus 278 ~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragr 357 (529)
T KOG0337|consen 278 RGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGR 357 (529)
T ss_pred HHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeecccHHHHh
Q psy10478 328 SSVCYTFYKTADFTKNN 344 (451)
Q Consensus 328 ~g~~i~l~~~~d~~~~~ 344 (451)
.|.++.++.+.|...+-
T Consensus 358 tg~aYs~V~~~~~~yl~ 374 (529)
T KOG0337|consen 358 TGRAYSLVASTDDPYLL 374 (529)
T ss_pred cceEEEEEecccchhhh
Confidence 99999999988776553
No 55
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.95 E-value=4.6e-27 Score=252.59 Aligned_cols=295 Identities=16% Similarity=0.156 Sum_probs=197.4
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhh-hhhhhcccceeccccCCCCcchhhcc
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPR-IVLIAIDEAHCVSQWGHDFRPSYRCL 111 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~-~~~~~~de~~~~~~~~~~~~~~~~~~ 111 (451)
+...++.+-+|||+|...-..+++.... ..+|+++.|.+++..+ ....+.. ++..+ . ...+...+. .......
T Consensus 20 ~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~q-ia~rva~~l~~~~-g-~~VGy~vr~--~~~~~~~ 93 (812)
T PRK11664 20 APQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARN-VAQRLAEQLGEKP-G-ETVGYRMRA--ESKVGPN 93 (812)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHH-HHHHHHHHhCccc-C-ceEEEEecC--ccccCCC
Confidence 4567788899999998865555544322 2489999999998755 4443321 10000 0 001111111 1111223
Q ss_pred cccccCCCCchhhhcc---ccCcccEEEEccccccccCCCCcHHHHHHHHHhhc-cCCCCCEEEEEeeCChHHHHHHHHh
Q psy10478 112 SELRLPLPDVPILFLS---RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRL-PLPDVPILAVTATATPVVIDDICTS 187 (451)
Q Consensus 112 ~~l~~~~~~~~~~~l~---~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~-~~~~~~~v~lSAT~~~~~~~~i~~~ 187 (451)
..+.+.||+..+..+. .++++++|||||+|..+-. .++.-.+ +..+.. ..++.++++||||++.... .+.
T Consensus 94 t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~-~Dl~L~l--l~~i~~~lr~~lqlilmSATl~~~~l---~~~ 167 (812)
T PRK11664 94 TRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQ-ADLALAL--LLDVQQGLRDDLKLLIMSATLDNDRL---QQL 167 (812)
T ss_pred CcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccc-cchHHHH--HHHHHHhCCccceEEEEecCCCHHHH---HHh
Confidence 4678889998876654 3678999999999974321 1121111 112222 2467899999999987643 333
Q ss_pred cCCCCCeEEecC-CCCC-ceEEEEEecchhHH----HHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHH---CCCCe
Q psy10478 188 LMLRDPNIINTG-FDRP-NLYLAASVKQDDIM----ADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR---NGIQN 258 (451)
Q Consensus 188 l~l~~~~~~~~~-~~~~-~l~~~~~~~~~~~~----~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~---~~~~v 258 (451)
+ .++.++... ...| ..+|.......... ..+..++.. ..+++|||++++.+++.+++.|.+ .++.+
T Consensus 168 ~--~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~---~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v 242 (812)
T PRK11664 168 L--PDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQ---ESGSLLLFLPGVGEIQRVQEQLASRVASDVLL 242 (812)
T ss_pred c--CCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHh---CCCCEEEEcCCHHHHHHHHHHHHHhccCCceE
Confidence 3 233333322 1112 12222111111111 123333332 468999999999999999999997 47889
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC------------------CHHHHHHHhc
Q psy10478 259 RPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK------------------DLSAYYQEIG 320 (451)
Q Consensus 259 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Qr~G 320 (451)
..+||+|+.++|.++++.|.+|+.+|||||+++++|||+|+|++||++|.++ |.++|.||+|
T Consensus 243 ~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~G 322 (812)
T PRK11664 243 CPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAG 322 (812)
T ss_pred EEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999988775 4578999999
Q ss_pred ccCCCCCCcEEEEEeecccHHHHhh
Q psy10478 321 RAGRDGLSSVCYTFYKTADFTKNNM 345 (451)
Q Consensus 321 RagR~g~~g~~i~l~~~~d~~~~~~ 345 (451)
||||. .+|.|+.+|+..+...+..
T Consensus 323 RaGR~-~~G~cyrL~t~~~~~~l~~ 346 (812)
T PRK11664 323 RAGRL-EPGICLHLYSKEQAERAAA 346 (812)
T ss_pred ccCCC-CCcEEEEecCHHHHhhCcc
Confidence 99999 5999999999887765443
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=6.7e-27 Score=245.36 Aligned_cols=300 Identities=16% Similarity=0.100 Sum_probs=189.8
Q ss_pred HHHhhhhhcccchhhhhhcCCCChhh---------hcCcCc---ccc--CCCeeEEEeCccccccchhhHhhhhh-hhhh
Q psy10478 25 KYLELRTCRRKYLLNHFKGSSVTMAE---------SQVPPD---KCC--DNCRQVVYMTPEYVTNNTSFLSRIPR-IVLI 89 (451)
Q Consensus 25 ~~~~~~~~~~~~i~a~~~~s~~~~~e---------~~~~~~---~~~--~~~~~vl~~tPe~l~~~~~~~~~l~~-~~~~ 89 (451)
..++....++..+..+-+|+|+|..- ....+. .+. ....++++++|.+.+..+ ....+.. ++..
T Consensus 171 qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~q-i~~~i~~~vg~~ 249 (675)
T PHA02653 171 KIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRL-HSITLLKSLGFD 249 (675)
T ss_pred HHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHH-HHHHHHHHhCcc
Confidence 34444455778888999999999751 011111 111 124589999999887654 3333322 1110
Q ss_pred hcccceeccccCCCCc---chhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCC-
Q psy10478 90 AIDEAHCVSQWGHDFR---PSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP- 165 (451)
Q Consensus 90 ~~de~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~- 165 (451)
...........|+.-. .......+++.+|+.. .+..++++++|||||||.++..+. ....+ ++...+
T Consensus 250 ~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---~l~~L~~v~~VVIDEaHEr~~~~D----llL~l--lk~~~~~ 320 (675)
T PHA02653 250 EIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---TLNKLFDYGTVIIDEVHEHDQIGD----IIIAV--ARKHIDK 320 (675)
T ss_pred ccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---cccccccCCEEEccccccCccchh----HHHHH--HHHhhhh
Confidence 0111111122332211 1111134566666553 233467899999999999987652 12112 222222
Q ss_pred CCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCC-Cce--EEEEEec-----c---hhHHHHHHHHHhh-ccCCCCc
Q psy10478 166 DVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDR-PNL--YLAASVK-----Q---DDIMADLRKLTNF-ENQFEGS 233 (451)
Q Consensus 166 ~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~-~~l--~~~~~~~-----~---~~~~~~L~~~l~~-~~~~~~~ 233 (451)
..++++||||++.+.. .+.+.+ .++..+..+... .++ .|..... . ......+...+.. ....+++
T Consensus 321 ~rq~ILmSATl~~dv~-~l~~~~--~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~ 397 (675)
T PHA02653 321 IRSLFLMTATLEDDRD-RIKEFF--PNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSS 397 (675)
T ss_pred cCEEEEEccCCcHhHH-HHHHHh--cCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCc
Confidence 2479999999987653 444444 356555543211 222 1111110 0 0111122222222 1124578
Q ss_pred EEEEcCChhHHHHHHHHHHHC--CCCeeeecCCCCHHHHHHHHHHh-hcCCceEEEEccccccccccCCccEEEEeC---
Q psy10478 234 TIIYCPTKVICEKVCDVLSRN--GIQNRPYHAHISLKQRKEIHGLF-VKDLIKVVVATCAFGMGIDKPDVRCVIHYG--- 307 (451)
Q Consensus 234 ~iVF~~t~~~~~~l~~~L~~~--~~~v~~~h~~l~~~~R~~~~~~f-~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~--- 307 (451)
+||||+++.+++.+++.|.+. ++.+..+||+|++. ++.+++| ++|+.+|||||+++++|||+|+|++||++|
T Consensus 398 iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k 475 (675)
T PHA02653 398 GIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVY 475 (675)
T ss_pred EEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCcc
Confidence 999999999999999999987 68999999999974 4666777 689999999999999999999999999999
Q ss_pred CCC---------CHHHHHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 308 APK---------DLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 308 ~p~---------s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
.|. |.++|.||+|||||. ++|.|+.+|++++.
T Consensus 476 ~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 476 VPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred CCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 665 889999999999999 69999999998764
No 57
>KOG0334|consensus
Probab=99.95 E-value=2.4e-27 Score=247.94 Aligned_cols=313 Identities=18% Similarity=0.234 Sum_probs=238.2
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc------CC-CeeEEEeCccccccchhhHhhhhhhhhh-hcccce
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC------DN-CRQVVYMTPEYVTNNTSFLSRIPRIVLI-AIDEAH 95 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~------~~-~~~vl~~tPe~l~~~~~~~~~l~~~~~~-~~de~~ 95 (451)
...++..-.++..|..+-++||+|.+.....+..+. .| +.--+|++|.+-+..+ ..+.+..+... .+..+-
T Consensus 393 ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~Q-I~r~~~kf~k~l~ir~v~ 471 (997)
T KOG0334|consen 393 AQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQ-IHREVRKFLKLLGIRVVC 471 (997)
T ss_pred hhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHH-HHHHHHHHHhhcCceEEE
Confidence 445666667888899999999999998554443222 11 3567889999988766 44444443221 111222
Q ss_pred eccccCCC-CcchhhcccccccCCCCchhhhccc-------cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCC
Q psy10478 96 CVSQWGHD-FRPSYRCLSELRLPLPDVPILFLSR-------IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 167 (451)
Q Consensus 96 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~l~~-------l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~ 167 (451)
....|+-. .....++..++++.||++.+.++.. |.++.++|+||||.+++.| |.|..-+| +....|..
T Consensus 472 vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpdr 547 (997)
T KOG0334|consen 472 VYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPDR 547 (997)
T ss_pred ecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheec--cCcccchH--Hhhcchhh
Confidence 22455422 3333445589999999999988732 4556699999999999888 88887665 33446789
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCC-----CCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChh
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFD-----RPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKV 242 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~ 242 (451)
|.+++|||.+..+.. +.... +..|..+..... .-+..+.+......++..|..++.... ...++||||.+..
T Consensus 548 QtvlfSatfpr~m~~-la~~v-l~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~-e~~~tiiFv~~qe 624 (997)
T KOG0334|consen 548 QTVLFSATFPRSMEA-LARKV-LKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERY-EDGKTIIFVDKQE 624 (997)
T ss_pred hhhhhhhhhhHHHHH-HHHHh-hcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHh-hcCCEEEEEcCch
Confidence 999999999988544 44443 235544433311 122344444445778888998887765 5899999999999
Q ss_pred HHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhccc
Q psy10478 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRA 322 (451)
Q Consensus 243 ~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRa 322 (451)
.|..+.+.|.+.|+.+..+||+.++.+|..++++|++|.+.+||||+++++|+|++++.+||||++|...+.|+||+||+
T Consensus 625 ~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRT 704 (997)
T KOG0334|consen 625 KADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRT 704 (997)
T ss_pred HHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEeecccHHHHh
Q psy10478 323 GRDGLSSVCYTFYKTADFTKNN 344 (451)
Q Consensus 323 gR~g~~g~~i~l~~~~d~~~~~ 344 (451)
||.|..|.|++|..+.+.....
T Consensus 705 gragrkg~AvtFi~p~q~~~a~ 726 (997)
T KOG0334|consen 705 GRAGRKGAAVTFITPDQLKYAG 726 (997)
T ss_pred ccCCccceeEEEeChHHhhhHH
Confidence 9999999999999996555443
No 58
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=1.8e-27 Score=268.60 Aligned_cols=254 Identities=16% Similarity=0.189 Sum_probs=190.9
Q ss_pred hhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhccccccc
Q psy10478 37 LLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRL 116 (451)
Q Consensus 37 i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~ 116 (451)
+.+++++|+.+..+....++.+.+|.++|||+||+++.... .. +..
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~--~~-l~~------------------------------- 198 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNF--PE-MKH------------------------------- 198 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhH--HH-Hhh-------------------------------
Confidence 45778899999888777788888899999999999876532 11 110
Q ss_pred CCCCchhhhccccCcccEEEEccccccccCCC---------CcHHHHHH----HH-------------------HhhccC
Q psy10478 117 PLPDVPILFLSRIPRIVLIAIDEAHCVSQWGH---------DFRPSYRC----LS-------------------ELRLPL 164 (451)
Q Consensus 117 ~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~---------~fr~~~~~----l~-------------------~l~~~~ 164 (451)
.+++++||||||++++||+ +|++.+.. +. .....+
T Consensus 199 -------------~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (1638)
T PRK14701 199 -------------LKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKI 265 (1638)
T ss_pred -------------CCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhc
Confidence 2699999999999999887 79988864 21 111122
Q ss_pred CC-CC-EEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEEe---cchhHHHHHHHHHhhccCCCCcEEEEcC
Q psy10478 165 PD-VP-ILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASV---KQDDIMADLRKLTNFENQFEGSTIIYCP 239 (451)
Q Consensus 165 ~~-~~-~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~L~~~l~~~~~~~~~~iVF~~ 239 (451)
+. .+ ++.+|||.++.. ++...+ .++..+..+..++++...... ........|..+++. .+.++||||+
T Consensus 266 ~~~~~~ll~~SAT~~~r~--~~~~l~--~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~---~g~~gIVF~~ 338 (1638)
T PRK14701 266 GNKIGCLIVASATGKAKG--DRVKLY--RELLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKK---LGKGGLIFVP 338 (1638)
T ss_pred CCCccEEEEEecCCCchh--HHHHHh--hcCeEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHh---CCCCeEEEEe
Confidence 33 33 467899998642 223332 455566666666654333222 122222456677665 3578999999
Q ss_pred ChhH---HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEc----cccccccccCC-ccEEEEeCCCC-
Q psy10478 240 TKVI---CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT----CAFGMGIDKPD-VRCVIHYGAPK- 310 (451)
Q Consensus 240 t~~~---~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT----~~~~~GiD~p~-v~~VI~~~~p~- 310 (451)
|++. |+.+++.|.+.|+++..+||+ |..++++|++|+++||||| ++++||||+|+ |++|||+|+|+
T Consensus 339 t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~ 413 (1638)
T PRK14701 339 IDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKF 413 (1638)
T ss_pred ccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCC
Confidence 9875 589999999999999999995 8899999999999999999 48899999999 99999999999
Q ss_pred --CHHHHHHHh-------------cccCCCCCCcEEEEEeecccHHHHhhhhcC
Q psy10478 311 --DLSAYYQEI-------------GRAGRDGLSSVCYTFYKTADFTKNNMIFQP 349 (451)
Q Consensus 311 --s~~~y~Qr~-------------GRagR~g~~g~~i~l~~~~d~~~~~~~~~~ 349 (451)
+++.|.|.. ||+||+|.++.+++.+..++....+.++..
T Consensus 414 ~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 414 RFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhcc
Confidence 999888877 999999999888777777777766666554
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=4e-27 Score=234.79 Aligned_cols=291 Identities=18% Similarity=0.150 Sum_probs=180.2
Q ss_pred hhhhhhcCCCChhhhcCcCcccc-CCCeeEEEeCccccccchhhHhhhhhh-hhhhcccceeccc-----cCCC---Ccc
Q psy10478 37 LLNHFKGSSVTMAESQVPPDKCC-DNCRQVVYMTPEYVTNNTSFLSRIPRI-VLIAIDEAHCVSQ-----WGHD---FRP 106 (451)
Q Consensus 37 i~a~~~~s~~~~~e~~~~~~~~~-~~~~~vl~~tPe~l~~~~~~~~~l~~~-~~~~~de~~~~~~-----~~~~---~~~ 106 (451)
++.+.++||+|......++..+. ....+++|+.|.+.+..+ ..+.+..+ +- .+...|+... ...+ +..
T Consensus 3 vi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q-~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 3 VIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINA-MYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHH-HHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHHH
Confidence 45677899999876666655543 234689999999988766 44444332 10 0111121100 0000 000
Q ss_pred h---------hhcccccccCCCCchhhhccc-c-------C--cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCC
Q psy10478 107 S---------YRCLSELRLPLPDVPILFLSR-I-------P--RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 167 (451)
Q Consensus 107 ~---------~~~~~~l~~~~~~~~~~~l~~-l-------~--~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~ 167 (451)
. ......+.+.||+..+..+.. + . ..+++||||+|.+.+++. .. +..+..... ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~--~~-l~~~l~~l~-~~~~ 156 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTL--AL-ILAVLEVLK-DNDV 156 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHH--HH-HHHHHHHHH-HcCC
Confidence 0 011244666777665433322 1 1 237899999999987652 22 322222222 2478
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCC-CCeEEecCC----CCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChh
Q psy10478 168 PILAVTATATPVVIDDICTSLMLR-DPNIINTGF----DRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKV 242 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~-~~~~~~~~~----~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~ 242 (451)
|+++||||++.... ++....... .+....... .+...... ......+...+..++... ..++++||||+|++
T Consensus 157 ~~i~~SATlp~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~ 233 (358)
T TIGR01587 157 PILLMSATLPKFLK-EYAEKIGYVEFNEPLDLKEERRFERHRFIKI-ESDKVGEISSLERLLEFI-KKGGKIAIIVNTVD 233 (358)
T ss_pred CEEEEecCchHHHH-HHHhcCCCcccccCCCCccccccccccceee-ccccccCHHHHHHHHHHh-hCCCeEEEEECCHH
Confidence 99999999986543 333333221 111111110 01111111 111122334444444332 25789999999999
Q ss_pred HHHHHHHHHHHCCC--CeeeecCCCCHHHHHHH----HHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHH
Q psy10478 243 ICEKVCDVLSRNGI--QNRPYHAHISLKQRKEI----HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYY 316 (451)
Q Consensus 243 ~~~~l~~~L~~~~~--~v~~~h~~l~~~~R~~~----~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~ 316 (451)
.++.+++.|++.+. .+..+||++++.+|.++ ++.|++|+.+|||||+++++|+|++ +++||++..| ..+|+
T Consensus 234 ~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~i 310 (358)
T TIGR01587 234 RAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLI 310 (358)
T ss_pred HHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHH
Confidence 99999999998765 49999999999999764 8899999999999999999999995 8888888766 78999
Q ss_pred HHhcccCCCCCC----cEEEEEeeccc
Q psy10478 317 QEIGRAGRDGLS----SVCYTFYKTAD 339 (451)
Q Consensus 317 Qr~GRagR~g~~----g~~i~l~~~~d 339 (451)
||+||+||.|+. |..+++....+
T Consensus 311 qr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 311 QRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999998854 35666665443
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.94 E-value=2.9e-26 Score=224.97 Aligned_cols=302 Identities=18% Similarity=0.258 Sum_probs=204.5
Q ss_pred hcccchhhhhhcCCCCh-hhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhccc-ceec-cccCCCC---c
Q psy10478 32 CRRKYLLNHFKGSSVTM-AESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDE-AHCV-SQWGHDF---R 105 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~-~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de-~~~~-~~~~~~~---~ 105 (451)
.+.+.++...+.||+|. +|..-+. .+.+++-++||++|-..+.|+++..+.++.+-+...- ...+ +..+..- .
T Consensus 231 eG~nllVVSaTasGKTLIgElAGi~-~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~ 309 (830)
T COG1202 231 EGENLLVVSATASGKTLIGELAGIP-RLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVV 309 (830)
T ss_pred cCCceEEEeccCCCcchHHHhhCcH-HHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccc
Confidence 34555666667777774 4444444 4455567999999999999885554444332111110 0000 1111110 0
Q ss_pred chhhcccccccCCCCchhhhc---cccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHH
Q psy10478 106 PSYRCLSELRLPLPDVPILFL---SRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVID 182 (451)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~l---~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~ 182 (451)
-....-++++++|-.-.--.+ ..+++++.|||||+|.+-+.....|-+ -.|.+++..+|+.|++.+|||..+..
T Consensus 310 ~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLd-GLI~RLr~l~~~AQ~i~LSATVgNp~-- 386 (830)
T COG1202 310 VDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLD-GLIGRLRYLFPGAQFIYLSATVGNPE-- 386 (830)
T ss_pred cCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchh-hHHHHHHHhCCCCeEEEEEeecCChH--
Confidence 111222556666655443333 347899999999999997633222222 23567777789999999999997654
Q ss_pred HHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhc------cCCCCcEEEEcCChhHHHHHHHHHHHCCC
Q psy10478 183 DICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFE------NQFEGSTIIYCPTKVICEKVCDVLSRNGI 256 (451)
Q Consensus 183 ~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~------~~~~~~~iVF~~t~~~~~~l~~~L~~~~~ 256 (451)
.+++.|+.+- ..+...+..-.-++.+.....++.+.+.++.+.. ....+++|||++|+..|..++..|...|+
T Consensus 387 elA~~l~a~l-V~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~ 465 (830)
T COG1202 387 ELAKKLGAKL-VLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGL 465 (830)
T ss_pred HHHHHhCCee-EeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCc
Confidence 5677777542 2222111111224444444566666666665543 23578999999999999999999999999
Q ss_pred CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEE---EeCCCC-CHHHHHHHhcccCCCC--CCcE
Q psy10478 257 QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI---HYGAPK-DLSAYYQEIGRAGRDG--LSSV 330 (451)
Q Consensus 257 ~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI---~~~~p~-s~~~y~Qr~GRagR~g--~~g~ 330 (451)
++..||+||+..+|+.++..|.++++.++|+|.+++.|+|+|.-.+|+ -+|.-+ |+.+|.||.|||||.+ ..|.
T Consensus 466 ~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGk 545 (830)
T COG1202 466 KAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGK 545 (830)
T ss_pred ccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCce
Confidence 999999999999999999999999999999999999999999655543 234443 8999999999999987 4588
Q ss_pred EEEEeecc
Q psy10478 331 CYTFYKTA 338 (451)
Q Consensus 331 ~i~l~~~~ 338 (451)
+++++.+.
T Consensus 546 Vyllvepg 553 (830)
T COG1202 546 VYLLVEPG 553 (830)
T ss_pred EEEEecCC
Confidence 89988774
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.94 E-value=4.3e-25 Score=233.30 Aligned_cols=198 Identities=19% Similarity=0.197 Sum_probs=137.4
Q ss_pred cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCC---CCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCC---
Q psy10478 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP---DVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDR--- 202 (451)
Q Consensus 129 l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~---~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~--- 202 (451)
++++.++|+|||| ++.| |......|.......+ ..++++||||++.+..+ ....+ +.++..+.....+
T Consensus 169 L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~-l~~~~-~~~p~~i~V~~~~l~a 242 (844)
T TIGR02621 169 LGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPD-RTTLL-SAEDYKHPVLKKRLAA 242 (844)
T ss_pred hccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHH-HHHHH-ccCCceeecccccccc
Confidence 3579999999999 4555 9998888866432222 26899999999876654 23332 2233333222111
Q ss_pred CceEEEEEecchhHHHHHHHHH-hhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHH-----HHHHH
Q psy10478 203 PNLYLAASVKQDDIMADLRKLT-NFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRK-----EIHGL 276 (451)
Q Consensus 203 ~~l~~~~~~~~~~~~~~L~~~l-~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~-----~~~~~ 276 (451)
+.+...+......+...+...+ ......++++||||||++.++.+++.|++.++ ..+||+|++.+|. .+++.
T Consensus 243 ~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~ 320 (844)
T TIGR02621 243 KKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNR 320 (844)
T ss_pred cceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHH
Confidence 1111111112222332222221 11122568999999999999999999998876 8999999999999 78899
Q ss_pred hhc----CC-------ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCc-EEEEEeec
Q psy10478 277 FVK----DL-------IKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSS-VCYTFYKT 337 (451)
Q Consensus 277 f~~----g~-------~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g-~~i~l~~~ 337 (451)
|++ |. .+|||||+++++|+|++. ++||+...| .++|+||+||+||.|+.+ ..+.++..
T Consensus 321 Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 321 FLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 987 44 689999999999999986 888887766 689999999999999753 33455433
No 62
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.94 E-value=3.5e-25 Score=242.39 Aligned_cols=300 Identities=19% Similarity=0.234 Sum_probs=194.5
Q ss_pred hcccchhhhhhcCCCChhhhcCcCccccCCC-eeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCC--CCcchh
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCCDNC-RQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGH--DFRPSY 108 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~-~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~--~~~~~~ 108 (451)
.+...++++-+|||+|.. .....-....|. ..|+++-|-++..-. ....+..- ..+ .++...|. .|....
T Consensus 88 ~~~VviI~GeTGSGKTTq-lPq~lle~g~g~~g~I~~TQPRRlAArs-LA~RVA~E----l~~-~lG~~VGY~vrf~~~~ 160 (1294)
T PRK11131 88 DHQVVIVAGETGSGKTTQ-LPKICLELGRGVKGLIGHTQPRRLAART-VANRIAEE----LET-ELGGCVGYKVRFNDQV 160 (1294)
T ss_pred hCCeEEEECCCCCCHHHH-HHHHHHHcCCCCCCceeeCCCcHHHHHH-HHHHHHHH----Hhh-hhcceeceeecCcccc
Confidence 455667788899999873 232222222332 256666687775432 22222111 000 01111111 122222
Q ss_pred hcccccccCCCCchhhhccc---cCcccEEEEccccc-cccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 109 RCLSELRLPLPDVPILFLSR---IPRIVLIAIDEAHC-VSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 109 ~~~~~l~~~~~~~~~~~l~~---l~~l~~vViDEah~-~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
..-..++..||+..+..+.. |+++++|||||||+ .++.+ |...+ +..+....++.++|+||||++.. .+
T Consensus 161 s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~D--fLLg~--Lk~lL~~rpdlKvILmSATid~e---~f 233 (1294)
T PRK11131 161 SDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNID--FILGY--LKELLPRRPDLKVIITSATIDPE---RF 233 (1294)
T ss_pred CCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccc--hHHHH--HHHhhhcCCCceEEEeeCCCCHH---HH
Confidence 33467888999998876542 68899999999995 45533 65432 33344445788999999999764 34
Q ss_pred HHhcCCCCCeEEecCC-CCC-ceEEEEEecc-----hhHHHHHHHHHhh-ccCCCCcEEEEcCChhHHHHHHHHHHHCCC
Q psy10478 185 CTSLMLRDPNIINTGF-DRP-NLYLAASVKQ-----DDIMADLRKLTNF-ENQFEGSTIIYCPTKVICEKVCDVLSRNGI 256 (451)
Q Consensus 185 ~~~l~l~~~~~~~~~~-~~~-~l~~~~~~~~-----~~~~~~L~~~l~~-~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~ 256 (451)
.+.++ ..|. +..+. ..| ...|...... ......+...+.. .....+++|||++++.+++.+++.|.+.++
T Consensus 234 s~~F~-~apv-I~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~ 311 (1294)
T PRK11131 234 SRHFN-NAPI-IEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNL 311 (1294)
T ss_pred HHHcC-CCCE-EEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCC
Confidence 44443 3443 33322 112 2233221111 1122233322221 123568899999999999999999998875
Q ss_pred C---eeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCC---------------C---CCHHHH
Q psy10478 257 Q---NRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA---------------P---KDLSAY 315 (451)
Q Consensus 257 ~---v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~---------------p---~s~~~y 315 (451)
. +..+||+|++++|..+++. .|..+|||||+++++|||+|+|++||++|. | .|.++|
T Consensus 312 ~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa 389 (1294)
T PRK11131 312 RHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASA 389 (1294)
T ss_pred CcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhH
Confidence 4 6789999999999999886 578899999999999999999999999873 3 467899
Q ss_pred HHHhcccCCCCCCcEEEEEeecccHHHHhhhhcCC
Q psy10478 316 YQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPN 350 (451)
Q Consensus 316 ~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~~~~ 350 (451)
.||+|||||. .+|.|+.+|+++++..+..+..++
T Consensus 390 ~QRaGRAGR~-~~G~c~rLyte~d~~~~~~~~~PE 423 (1294)
T PRK11131 390 NQRKGRCGRV-SEGICIRLYSEDDFLSRPEFTDPE 423 (1294)
T ss_pred hhhccccCCC-CCcEEEEeCCHHHHHhhhcccCCc
Confidence 9999999999 599999999998877655444443
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.93 E-value=8.7e-26 Score=233.67 Aligned_cols=289 Identities=12% Similarity=0.050 Sum_probs=186.2
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhccc
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLS 112 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~ 112 (451)
+..++..+.+++|+|.-........+..++.++||++|.+.+..+ |.+.+..+....... ....++..... .-.
T Consensus 129 ~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q-~~~~l~~~~~~~~~~--~~~i~~g~~~~---~~~ 202 (501)
T PHA02558 129 NNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQ-MIDDFVDYRLFPREA--MHKIYSGTAKD---TDA 202 (501)
T ss_pred cCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHH-HHHHHHHhccccccc--eeEEecCcccC---CCC
Confidence 456788999999999753322221234555699999999999877 777776542111111 11122211111 124
Q ss_pred ccccCCCCchhhhcc-ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccC-CCCCEEEEEeeCChHHHHH--HHHhc
Q psy10478 113 ELRLPLPDVPILFLS-RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL-PDVPILAVTATATPVVIDD--ICTSL 188 (451)
Q Consensus 113 ~l~~~~~~~~~~~l~-~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~-~~~~~v~lSAT~~~~~~~~--i~~~l 188 (451)
.+.++|++....... .+.++++||+||||++... .+..+ .... +..++++||||+....... +...+
T Consensus 203 ~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~------~~~~i---l~~~~~~~~~lGLTATp~~~~~~~~~~~~~f 273 (501)
T PHA02558 203 PIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGK------SLTSI---ITKLDNCKFKFGLTGSLRDGKANILQYVGLF 273 (501)
T ss_pred CEEEeeHHHHhhchhhhccccCEEEEEchhcccch------hHHHH---HHhhhccceEEEEeccCCCccccHHHHHHhh
Confidence 667777766554332 2568999999999998642 23332 2223 3456899999996532211 11111
Q ss_pred C----------------CCCCeEEe--cCCCCCce------EEE----EEecchhHHHHHHHHHhhccCCCCcEEEEcCC
Q psy10478 189 M----------------LRDPNIIN--TGFDRPNL------YLA----ASVKQDDIMADLRKLTNFENQFEGSTIIYCPT 240 (451)
Q Consensus 189 ~----------------l~~~~~~~--~~~~~~~l------~~~----~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t 240 (451)
| +..+.+.. .....+.. .|. ...........+..++......+.+++|||++
T Consensus 274 G~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~ 353 (501)
T PHA02558 274 GDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKY 353 (501)
T ss_pred CCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 1 01111110 00000000 000 00000112222333333333367889999999
Q ss_pred hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEc-cccccccccCCccEEEEeCCCCCHHHHHHHh
Q psy10478 241 KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT-CAFGMGIDKPDVRCVIHYGAPKDLSAYYQEI 319 (451)
Q Consensus 241 ~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT-~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~ 319 (451)
+++++.+++.|.+.|.++..+||+++.++|..+++.|++|+..||||| +++++|+|+|++++||++.+++|...|+||+
T Consensus 354 ~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~Qri 433 (501)
T PHA02558 354 VEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSI 433 (501)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhh
Confidence 999999999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred cccCCCCCCcEEEEEee
Q psy10478 320 GRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 320 GRagR~g~~g~~i~l~~ 336 (451)
||++|.+..+....+++
T Consensus 434 GR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 434 GRVLRKHGSKSIATVWD 450 (501)
T ss_pred hccccCCCCCceEEEEE
Confidence 99999886554444444
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=3.5e-24 Score=209.01 Aligned_cols=108 Identities=27% Similarity=0.338 Sum_probs=100.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCee-e--------ecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNR-P--------YHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDV 300 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~-~--------~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v 300 (451)
.+.++|||++.++.++.+.++|.+.+..+. . ...||++.++.++++.|++|+++|||||++.++|+|+|++
T Consensus 365 ~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~v 444 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEV 444 (542)
T ss_pred CCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcc
Confidence 467999999999999999999999987764 2 2357999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecc
Q psy10478 301 RCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTA 338 (451)
Q Consensus 301 ~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 338 (451)
+.||.|++-.|..-++||.||+||. +.|.+++++...
T Consensus 445 DlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 445 DLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999999999999998 689999998877
No 65
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2e-24 Score=222.16 Aligned_cols=245 Identities=18% Similarity=0.146 Sum_probs=179.1
Q ss_pred hhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccccCC
Q psy10478 39 NHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118 (451)
Q Consensus 39 a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (451)
.+.++|+.+..++...+..+.+|..+|+++|+..+..+.
T Consensus 53 v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf~p~----------------------------------------- 91 (505)
T TIGR00595 53 VAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALFLPF----------------------------------------- 91 (505)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHcCcc-----------------------------------------
Confidence 567899999999888999999999999999998664321
Q ss_pred CCchhhhccccCcccEEEEccccccccCCCCcHHHH--HHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEE
Q psy10478 119 PDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSY--RCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196 (451)
Q Consensus 119 ~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~--~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~ 196 (451)
.++++|||||+|..+.++.++ |.| +.+..++....+.+++++|||++.+....+... ....+
T Consensus 92 -----------~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g----~~~~~ 155 (505)
T TIGR00595 92 -----------KNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQK----AYRLL 155 (505)
T ss_pred -----------cCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcC----CeEEe
Confidence 479999999999998776543 333 456667777789999999999887766543221 11111
Q ss_pred ec-----CCCCCceEEEEEecc---hhHHHHHHHHHhhccCCCCcEEEEcCChhH-------------------------
Q psy10478 197 NT-----GFDRPNLYLAASVKQ---DDIMADLRKLTNFENQFEGSTIIYCPTKVI------------------------- 243 (451)
Q Consensus 197 ~~-----~~~~~~l~~~~~~~~---~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~------------------------- 243 (451)
.. ....|.+.+...... ......+.+.+......++++|||+|++..
T Consensus 156 ~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h 235 (505)
T TIGR00595 156 VLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYH 235 (505)
T ss_pred echhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEe
Confidence 11 111222222211111 112334555555555578899999877654
Q ss_pred -----------------------------------HHHHHHHHHHC--CCCeeeecCCCCHHHH--HHHHHHhhcCCceE
Q psy10478 244 -----------------------------------CEKVCDVLSRN--GIQNRPYHAHISLKQR--KEIHGLFVKDLIKV 284 (451)
Q Consensus 244 -----------------------------------~~~l~~~L~~~--~~~v~~~h~~l~~~~R--~~~~~~f~~g~~~i 284 (451)
++++.+.|.+. +.++..+|++++...+ +++++.|.+|+.+|
T Consensus 236 ~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~I 315 (505)
T TIGR00595 236 KKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADI 315 (505)
T ss_pred cCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCE
Confidence 58888888887 7889999999987665 89999999999999
Q ss_pred EEEccccccccccCCccEEEEeCC------CC------CHHHHHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 285 VVATCAFGMGIDKPDVRCVIHYGA------PK------DLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 285 LVaT~~~~~GiD~p~v~~VI~~~~------p~------s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
||+|+++++|+|+|+|++|+.++. |. ....|.|++||+||.+++|.+++.....+.
T Consensus 316 LVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 316 LIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred EEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 999999999999999999865443 32 357899999999999999999866543333
No 66
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.92 E-value=8.7e-24 Score=232.24 Aligned_cols=296 Identities=19% Similarity=0.241 Sum_probs=189.9
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCC-CeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCC--CCcchhh
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDN-CRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGH--DFRPSYR 109 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~-~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~--~~~~~~~ 109 (451)
+...++++-+|||+|..- ....-....| ...|+++-|-++..-. ....+..- .. ...+...|. .|.....
T Consensus 82 ~~vvii~g~TGSGKTTql-Pq~lle~~~~~~~~I~~tQPRRlAA~s-vA~RvA~e----lg-~~lG~~VGY~vR~~~~~s 154 (1283)
T TIGR01967 82 NQVVIIAGETGSGKTTQL-PKICLELGRGSHGLIGHTQPRRLAART-VAQRIAEE----LG-TPLGEKVGYKVRFHDQVS 154 (1283)
T ss_pred CceEEEeCCCCCCcHHHH-HHHHHHcCCCCCceEecCCccHHHHHH-HHHHHHHH----hC-CCcceEEeeEEcCCcccC
Confidence 556777888999998742 2222111112 2367777788775433 22222221 00 011112221 1222223
Q ss_pred cccccccCCCCchhhhcc---ccCcccEEEEccccc-cccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 110 CLSELRLPLPDVPILFLS---RIPRIVLIAIDEAHC-VSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 110 ~~~~l~~~~~~~~~~~l~---~l~~l~~vViDEah~-~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
.-..+...|++.++..+. .|.++++|||||||. .++.+ |.-.+ +..+....++.++|+||||++.. .+.
T Consensus 155 ~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D--~LL~l--Lk~il~~rpdLKlIlmSATld~~---~fa 227 (1283)
T TIGR01967 155 SNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNID--FLLGY--LKQLLPRRPDLKIIITSATIDPE---RFS 227 (1283)
T ss_pred CCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccch--hHHHH--HHHHHhhCCCCeEEEEeCCcCHH---HHH
Confidence 345678888888876553 367899999999995 44433 44332 23333445788999999999754 445
Q ss_pred HhcCCCCCeEEecCCCCC-ceEEEEEecc-----hhHHHHHHHHHhhc-cCCCCcEEEEcCChhHHHHHHHHHHHCC---
Q psy10478 186 TSLMLRDPNIINTGFDRP-NLYLAASVKQ-----DDIMADLRKLTNFE-NQFEGSTIIYCPTKVICEKVCDVLSRNG--- 255 (451)
Q Consensus 186 ~~l~l~~~~~~~~~~~~~-~l~~~~~~~~-----~~~~~~L~~~l~~~-~~~~~~~iVF~~t~~~~~~l~~~L~~~~--- 255 (451)
+.++ ..|.+...+..-| .+.|...... ....+.+...+... ....+.+|||+++..+++.+++.|.+.+
T Consensus 228 ~~F~-~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~ 306 (1283)
T TIGR01967 228 RHFN-NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRH 306 (1283)
T ss_pred HHhc-CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCC
Confidence 5543 3343322221112 2233221110 12233333333221 1256899999999999999999999874
Q ss_pred CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC------------------CHHHHHH
Q psy10478 256 IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK------------------DLSAYYQ 317 (451)
Q Consensus 256 ~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Q 317 (451)
+.+..+||+|+.++|.++++.+ +..+|||||+++++|||+|+|++||++|.++ |.++|.|
T Consensus 307 ~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~Q 384 (1283)
T TIGR01967 307 TEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQ 384 (1283)
T ss_pred cEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHH
Confidence 4588999999999999987654 3468999999999999999999999999543 6789999
Q ss_pred HhcccCCCCCCcEEEEEeecccHHHHhhh
Q psy10478 318 EIGRAGRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 318 r~GRagR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
|+|||||.| +|.|+.+|+.++...+..+
T Consensus 385 RaGRAGR~~-~G~cyRLyte~~~~~~~~~ 412 (1283)
T TIGR01967 385 RKGRCGRVA-PGICIRLYSEEDFNSRPEF 412 (1283)
T ss_pred HhhhhCCCC-CceEEEecCHHHHHhhhhc
Confidence 999999998 9999999998887665433
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.92 E-value=3.1e-24 Score=212.78 Aligned_cols=274 Identities=16% Similarity=0.129 Sum_probs=168.8
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhh-hh----hcccceeccc-------cCCC
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIV-LI----AIDEAHCVSQ-------WGHD 103 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~-~~----~~de~~~~~~-------~~~~ 103 (451)
.++.+-++||+|......++. ...+.+|++|.+.+.++ ..+.+..+. .. .+.-.|..+. |..+
T Consensus 17 ~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~-~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~ 91 (357)
T TIGR03158 17 IFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIED-QTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYAND 91 (357)
T ss_pred EEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHH-HHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhh
Confidence 456788999999876544442 33467999999988766 333332221 00 0000111111 1000
Q ss_pred C-------------cc-hhhcccccccCCCCchhhhccc------------cCcccEEEEccccccccCCCCcHHHHHHH
Q psy10478 104 F-------------RP-SYRCLSELRLPLPDVPILFLSR------------IPRIVLIAIDEAHCVSQWGHDFRPSYRCL 157 (451)
Q Consensus 104 ~-------------~~-~~~~~~~l~~~~~~~~~~~l~~------------l~~l~~vViDEah~~~~~g~~fr~~~~~l 157 (451)
. +. .....+.++...|......+.. +.++++||+||+|.+..++..+...+...
T Consensus 92 ~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~ 171 (357)
T TIGR03158 92 KVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAY 171 (357)
T ss_pred hcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHH
Confidence 0 00 0011344555556555433221 36799999999999987765444433222
Q ss_pred HHh-hccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCC------------C------C---CceEEEEEecchh
Q psy10478 158 SEL-RLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGF------------D------R---PNLYLAASVKQDD 215 (451)
Q Consensus 158 ~~l-~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~------------~------~---~~l~~~~~~~~~~ 215 (451)
..+ +......+++++|||+++...+.+.....+..+.....+. . + |.+...+......
T Consensus 172 ~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 251 (357)
T TIGR03158 172 MQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDF 251 (357)
T ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEeCCch
Confidence 222 2222357999999999998877766543333332221111 0 1 3444444332222
Q ss_pred HHHHH---HHHHhhcc--CCCCcEEEEcCChhHHHHHHHHHHHCC--CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy10478 216 IMADL---RKLTNFEN--QFEGSTIIYCPTKVICEKVCDVLSRNG--IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT 288 (451)
Q Consensus 216 ~~~~L---~~~l~~~~--~~~~~~iVF~~t~~~~~~l~~~L~~~~--~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT 288 (451)
+...+ .+.+.... ..++++||||+|++.++.+++.|++.+ +.+..+||.+++.+|.++ ++.+|||||
T Consensus 252 ~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaT 325 (357)
T TIGR03158 252 KEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGT 325 (357)
T ss_pred hHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEe
Confidence 22223 22222111 256799999999999999999999864 578889999999988754 378999999
Q ss_pred cccccccccCCccEEEEeCCCCCHHHHHHHhcccC
Q psy10478 289 CAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAG 323 (451)
Q Consensus 289 ~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag 323 (451)
+++++|+|+|.+ +|| ++ |.+..+|+||+||+|
T Consensus 326 dv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 326 STVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred cHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999999999987 566 45 899999999999997
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=230.94 Aligned_cols=303 Identities=17% Similarity=0.131 Sum_probs=208.5
Q ss_pred HHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhh---hhhhhhcccceec
Q psy10478 21 KRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIP---RIVLIAIDEAHCV 97 (451)
Q Consensus 21 ~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~---~~~~~~~de~~~~ 97 (451)
.|+.+.-+......+.++++-++||+|.-....+.+.+.+++.++||++|.+.+..+ ....++ .+++-+
T Consensus 35 ~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~E-k~~~~~~~~~~GirV------- 106 (766)
T COG1204 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEE-KYEEFSRLEELGIRV------- 106 (766)
T ss_pred HHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHH-HHHHhhhHHhcCCEE-------
Confidence 444444444444789999999999999877777888888888999999999999877 333333 332111
Q ss_pred cccCCC--CcchhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHH-HHHhhccCCCCCEE
Q psy10478 98 SQWGHD--FRPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRC-LSELRLPLPDVPIL 170 (451)
Q Consensus 98 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~-l~~l~~~~~~~~~v 170 (451)
...+++ ..+.+..-.++++.||+.+...++. +..+++|||||+|.+.+.-+. |.+.. +.+++...+..+++
T Consensus 107 ~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG--~~lE~iv~r~~~~~~~~riv 184 (766)
T COG1204 107 GISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRG--PVLESIVARMRRLNELIRIV 184 (766)
T ss_pred EEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccC--ceehhHHHHHHhhCcceEEE
Confidence 111222 2223344467888888888776655 346999999999999754111 22222 33444445568999
Q ss_pred EEEeeCChHHHHHHHHhcCCCCCeEE--ecCCCCCce-EEEEEecc-------hhHHHHHHHHHhhccCCCCcEEEEcCC
Q psy10478 171 AVTATATPVVIDDICTSLMLRDPNII--NTGFDRPNL-YLAASVKQ-------DDIMADLRKLTNFENQFEGSTIIYCPT 240 (451)
Q Consensus 171 ~lSAT~~~~~~~~i~~~l~l~~~~~~--~~~~~~~~l-~~~~~~~~-------~~~~~~L~~~l~~~~~~~~~~iVF~~t 240 (451)
++|||+++.. +++.+++-...... ..+..++.. ...+.... ....+....++....+.++++||||+|
T Consensus 185 gLSATlpN~~--evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~s 262 (766)
T COG1204 185 GLSATLPNAE--EVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHS 262 (766)
T ss_pred EEeeecCCHH--HHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEec
Confidence 9999999865 78888876543111 111111111 11111111 112233344444444589999999999
Q ss_pred hhHHHHHHHHHHHC-------------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCce
Q psy10478 241 KVICEKVCDVLSRN-------------------------------------GIQNRPYHAHISLKQRKEIHGLFVKDLIK 283 (451)
Q Consensus 241 ~~~~~~l~~~L~~~-------------------------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~ 283 (451)
++.+...++.|+.. ...+++||+||+.++|..+++.|+.|.++
T Consensus 263 R~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik 342 (766)
T COG1204 263 RKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK 342 (766)
T ss_pred CchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce
Confidence 99999999999820 12467899999999999999999999999
Q ss_pred EEEEccccccccccCCccEEE----EeC-----CCCCHHHHHHHhcccCCCC--CCcEEEEEe
Q psy10478 284 VVVATCAFGMGIDKPDVRCVI----HYG-----APKDLSAYYQEIGRAGRDG--LSSVCYTFY 335 (451)
Q Consensus 284 iLVaT~~~~~GiD~p~v~~VI----~~~-----~p~s~~~y~Qr~GRagR~g--~~g~~i~l~ 335 (451)
|||||++++.|+|+|.-++|| .|+ .+-+..++.|+.|||||.| ..|.++++.
T Consensus 343 Vlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 343 VLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred EEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 999999999999999766665 355 4558899999999999988 346677766
No 69
>PRK09401 reverse gyrase; Reviewed
Probab=99.91 E-value=5.4e-24 Score=235.96 Aligned_cols=218 Identities=19% Similarity=0.247 Sum_probs=151.5
Q ss_pred CCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccccCCCCchh
Q psy10478 44 SSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPI 123 (451)
Q Consensus 44 s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (451)
++.+..+.....+.+.++..+|+|+||+++..+. ..+..
T Consensus 161 ~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~---~~l~~-------------------------------------- 199 (1176)
T PRK09401 161 SSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNF---DELPK-------------------------------------- 199 (1176)
T ss_pred CCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHH---Hhccc--------------------------------------
Confidence 3334455555566677788999999999987532 22211
Q ss_pred hhccccCcccEEEEccccccccCCCC---------cH-HHH-----------------HHHHHhhccC-----CCCCEEE
Q psy10478 124 LFLSRIPRIVLIAIDEAHCVSQWGHD---------FR-PSY-----------------RCLSELRLPL-----PDVPILA 171 (451)
Q Consensus 124 ~~l~~l~~l~~vViDEah~~~~~g~~---------fr-~~~-----------------~~l~~l~~~~-----~~~~~v~ 171 (451)
.+++++||||||+++.|+++ |. ..+ ..+..+.... ...++++
T Consensus 200 ------~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~il 273 (1176)
T PRK09401 200 ------KKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVV 273 (1176)
T ss_pred ------cccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEE
Confidence 36999999999999986533 53 222 2222222211 1578999
Q ss_pred EEeeCChHHH-HHHHHhcCCCCCeEEecCC---CCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhH---H
Q psy10478 172 VTATATPVVI-DDICTSLMLRDPNIINTGF---DRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI---C 244 (451)
Q Consensus 172 lSAT~~~~~~-~~i~~~l~l~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~---~ 244 (451)
+|||+++... ..+... +..+..+. ...++........ .+...|..++.. .+.++||||+|+.. +
T Consensus 274 fSAT~~~~~~~~~l~~~-----ll~~~v~~~~~~~rnI~~~yi~~~-~k~~~L~~ll~~---l~~~~LIFv~t~~~~~~a 344 (1176)
T PRK09401 274 SSATGRPRGNRVKLFRE-----LLGFEVGSPVFYLRNIVDSYIVDE-DSVEKLVELVKR---LGDGGLIFVPSDKGKEYA 344 (1176)
T ss_pred EeCCCCccchHHHHhhc-----cceEEecCcccccCCceEEEEEcc-cHHHHHHHHHHh---cCCCEEEEEecccChHHH
Confidence 9999987532 222221 11122211 1223322222211 455667777765 34689999999877 9
Q ss_pred HHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEE----ccccccccccCC-ccEEEEeCCCC------CHH
Q psy10478 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVA----TCAFGMGIDKPD-VRCVIHYGAPK------DLS 313 (451)
Q Consensus 245 ~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiD~p~-v~~VI~~~~p~------s~~ 313 (451)
+.+++.|...|+++..+||+| .+.+++|++|+++|||| |++++||||+|+ |++|||||.|+ ...
T Consensus 345 e~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~ 419 (1176)
T PRK09401 345 EELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEEL 419 (1176)
T ss_pred HHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccc
Confidence 999999999999999999999 23459999999999999 689999999999 89999999999 667
Q ss_pred HHHHHhccc
Q psy10478 314 AYYQEIGRA 322 (451)
Q Consensus 314 ~y~Qr~GRa 322 (451)
.|.|++||+
T Consensus 420 ~~~~~~~r~ 428 (1176)
T PRK09401 420 APPFLLLRL 428 (1176)
T ss_pred cCHHHHHHH
Confidence 889999998
No 70
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.90 E-value=5.5e-23 Score=222.20 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=106.0
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHH-HCCCCeeeecCCCCHHHHHHHHHHhhcC--CceEEEEccccc
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLS-RNGIQNRPYHAHISLKQRKEIHGLFVKD--LIKVVVATCAFG 292 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~-~~~~~v~~~h~~l~~~~R~~~~~~f~~g--~~~iLVaT~~~~ 292 (451)
+.+.|..+++.. .+.|+||||+++..+..+++.|+ ..|+.+..+||+|+..+|.++++.|+++ ..+|||||++++
T Consensus 480 Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 480 RVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 344455555544 57899999999999999999995 5699999999999999999999999984 599999999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 293 MGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 293 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
+|+|++.+++||+||+|.++..|.||+||+||.|+.+.+.+++.
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 99999999999999999999999999999999999887766553
No 71
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.90 E-value=4.2e-23 Score=219.69 Aligned_cols=303 Identities=16% Similarity=0.180 Sum_probs=200.7
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhh-hhhhhcccceeccccC---CCCcchhh
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPR-IVLIAIDEAHCVSQWG---HDFRPSYR 109 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~-~~~~~~de~~~~~~~~---~~~~~~~~ 109 (451)
...+..+.++||+|......+.+.+..| .++||++|+..+..+ +.+.+.. ++ ..+...|...... ..|.....
T Consensus 163 ~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q-~~~~l~~~fg-~~v~~~~s~~s~~~r~~~~~~~~~ 239 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQ-MLARFRARFG-APVAVLHSGLSDGERLDEWRKAKR 239 (679)
T ss_pred CcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHH-HHHHHHHHhC-CCEEEEECCCCHHHHHHHHHHHHc
Confidence 4566677889999987765555555554 589999999999877 5555543 21 1111122111110 11222233
Q ss_pred cccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHH--HHHHHhhccCCCCCEEEEEeeCChHHHHHHHHh
Q psy10478 110 CLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSY--RCLSELRLPLPDVPILAVTATATPVVIDDICTS 187 (451)
Q Consensus 110 ~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~--~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~ 187 (451)
....++++|++..+.. +.++++|||||+|..+.++.+ .+.| +.+..++....+.+++++|||++.+....+...
T Consensus 240 g~~~IVVgTrsal~~p---~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~~~g 315 (679)
T PRK05580 240 GEAKVVIGARSALFLP---FKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVRAKLENIPVVLGSATPSLESLANAQQG 315 (679)
T ss_pred CCCCEEEeccHHhccc---ccCCCEEEEECCCccccccCc-CCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHhcc
Confidence 3467899999877644 357999999999998866532 3333 556666677789999999999988776544221
Q ss_pred cCCCCCeEEecC-----CCCCceEEEEEecc------hhHHHHHHHHHhhccCCCCcEEEEcCChh--------------
Q psy10478 188 LMLRDPNIINTG-----FDRPNLYLAASVKQ------DDIMADLRKLTNFENQFEGSTIIYCPTKV-------------- 242 (451)
Q Consensus 188 l~l~~~~~~~~~-----~~~~~l~~~~~~~~------~~~~~~L~~~l~~~~~~~~~~iVF~~t~~-------------- 242 (451)
....+... ...|.+........ ......+.+.++.....++++|||+|++.
T Consensus 316 ----~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~ 391 (679)
T PRK05580 316 ----RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVA 391 (679)
T ss_pred ----ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCcc
Confidence 11111111 11222222211100 01223455555555557889999987532
Q ss_pred ----------------------------------------------HHHHHHHHHHHC--CCCeeeecCCCC--HHHHHH
Q psy10478 243 ----------------------------------------------ICEKVCDVLSRN--GIQNRPYHAHIS--LKQRKE 272 (451)
Q Consensus 243 ----------------------------------------------~~~~l~~~L~~~--~~~v~~~h~~l~--~~~R~~ 272 (451)
.++.+++.|.+. +.++..+|+++. .+++++
T Consensus 392 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~ 471 (679)
T PRK05580 392 ECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQ 471 (679)
T ss_pred CCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHH
Confidence 457788888876 788999999986 467999
Q ss_pred HHHHhhcCCceEEEEccccccccccCCccEEEEeCCC--C----------CHHHHHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 273 IHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP--K----------DLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 273 ~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p--~----------s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
+++.|.+|+.+|||+|+++++|+|+|+|++|+.++.. . ....|.|++||+||.+..|.+++.....+.
T Consensus 472 ~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~ 551 (679)
T PRK05580 472 LLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEH 551 (679)
T ss_pred HHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCC
Confidence 9999999999999999999999999999999765543 2 347899999999999999999987665554
Q ss_pred HHHhhhh
Q psy10478 341 TKNNMIF 347 (451)
Q Consensus 341 ~~~~~~~ 347 (451)
.....+.
T Consensus 552 ~~~~~~~ 558 (679)
T PRK05580 552 PVIQALL 558 (679)
T ss_pred HHHHHHH
Confidence 4444343
No 72
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=2.2e-22 Score=204.28 Aligned_cols=240 Identities=19% Similarity=0.220 Sum_probs=185.8
Q ss_pred hhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhccccccc
Q psy10478 37 LLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRL 116 (451)
Q Consensus 37 i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~ 116 (451)
+..+++.|+...+++..+.+.+.+|..+|+|+|.--+...-
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V--------------------------------------- 380 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKV--------------------------------------- 380 (677)
T ss_pred CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcce---------------------------------------
Confidence 56788999999999999999999999999999987554321
Q ss_pred CCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCC-CCCEEEEEeeCChHHHHHHHHhcC-CCCCe
Q psy10478 117 PLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP-DVPILAVTATATPVVIDDICTSLM-LRDPN 194 (451)
Q Consensus 117 ~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~-~~~~v~lSAT~~~~~~~~i~~~l~-l~~~~ 194 (451)
.+.++.++|+||-|++.- .-|. .++..-. ...++.||||+-|.+.. ...++ ++-..
T Consensus 381 -----------~F~~LgLVIiDEQHRFGV---~QR~------~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~ 438 (677)
T COG1200 381 -----------EFHNLGLVIIDEQHRFGV---HQRL------ALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSI 438 (677)
T ss_pred -----------eecceeEEEEeccccccH---HHHH------HHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchh
Confidence 125899999999998732 1111 1333333 46789999999998865 34333 33233
Q ss_pred EEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHH--------HHHHHHHHHC--CCCeeeecCC
Q psy10478 195 IINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVIC--------EKVCDVLSRN--GIQNRPYHAH 264 (451)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~--------~~l~~~L~~~--~~~v~~~h~~ 264 (451)
+-..+..|.++...+.... ....+.+.+......+.++.|.|+-+++. +.+++.|... ++.+..+||.
T Consensus 439 IdElP~GRkpI~T~~i~~~--~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGr 516 (677)
T COG1200 439 IDELPPGRKPITTVVIPHE--RRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGR 516 (677)
T ss_pred hccCCCCCCceEEEEeccc--cHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecC
Confidence 3445677766665554432 23444445554444899999999977654 4566677644 5679999999
Q ss_pred CCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCcEEEEEeeccc
Q psy10478 265 ISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK-DLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339 (451)
Q Consensus 265 l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 339 (451)
|+.+++++++++|++|+++|||||.+.+.|||+|+.++.|..++-. ..+++.|-.||.||.+.++.|++++.+..
T Consensus 517 m~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 517 MKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred CChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999988765 89999999999999999999999998765
No 73
>KOG0948|consensus
Probab=99.89 E-value=8.4e-24 Score=212.95 Aligned_cols=311 Identities=18% Similarity=0.221 Sum_probs=216.5
Q ss_pred HHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccC
Q psy10478 22 RVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWG 101 (451)
Q Consensus 22 q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~ 101 (451)
|-.+..++.+..+..+.|+...|.+..+|+..+. ....+.+|+|++|-+.++++++++++..+ -..+.++
T Consensus 134 Q~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~--sLr~kQRVIYTSPIKALSNQKYREl~~EF--------~DVGLMT 203 (1041)
T KOG0948|consen 134 QSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAM--SLREKQRVIYTSPIKALSNQKYRELLEEF--------KDVGLMT 203 (1041)
T ss_pred HhhhhhhhcCCceEEEEeecCCCcchHHHHHHHH--HHHhcCeEEeeChhhhhcchhHHHHHHHh--------cccceee
Confidence 4556677888888899898888888899887665 44667899999999999999888888776 2222232
Q ss_pred CC--CcchhhcccccccCCCCchhhhccccCcccEEEEccccccccC--CCCcHHHHHHHHHhhccCCCCCEEEEEeeCC
Q psy10478 102 HD--FRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQW--GHDFRPSYRCLSELRLPLPDVPILAVTATAT 177 (451)
Q Consensus 102 ~~--~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~--g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~ 177 (451)
.| .+|+..++......+.+.++....-+..+.+||+||+|.|-+. |--|... +.-.+.++..+++|||+|
T Consensus 204 GDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEET------IIllP~~vr~VFLSATiP 277 (1041)
T KOG0948|consen 204 GDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEET------IILLPDNVRFVFLSATIP 277 (1041)
T ss_pred cceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeee------EEeccccceEEEEeccCC
Confidence 23 7888888877777777777666666778999999999988653 3222222 222345899999999999
Q ss_pred hHHH-HHHHHhcCCCCCeEEecCCCCCc------------eEEEEEecc---hhHHHH-HHHHHhhc-------------
Q psy10478 178 PVVI-DDICTSLMLRDPNIINTGFDRPN------------LYLAASVKQ---DDIMAD-LRKLTNFE------------- 227 (451)
Q Consensus 178 ~~~~-~~i~~~l~l~~~~~~~~~~~~~~------------l~~~~~~~~---~~~~~~-L~~~l~~~------------- 227 (451)
+... .++...+.-+++.++...+...+ ++..+..+. ++.+.. +..+....
T Consensus 278 NA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~ 357 (1041)
T KOG0948|consen 278 NARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGR 357 (1041)
T ss_pred CHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccc
Confidence 8763 34444555556666655443322 233333322 111111 11111100
Q ss_pred ----------------------cCCCCcEEEEcCChhHHHHHHHHHHHC-------------------------------
Q psy10478 228 ----------------------NQFEGSTIIYCPTKVICEKVCDVLSRN------------------------------- 254 (451)
Q Consensus 228 ----------------------~~~~~~~iVF~~t~~~~~~l~~~L~~~------------------------------- 254 (451)
.....++|||+-|+++||.+|-.+.+.
T Consensus 358 kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPq 437 (1041)
T KOG0948|consen 358 KGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQ 437 (1041)
T ss_pred cCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchH
Confidence 013468999999999999998888632
Q ss_pred --------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC---------CHHHHHH
Q psy10478 255 --------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK---------DLSAYYQ 317 (451)
Q Consensus 255 --------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~---------s~~~y~Q 317 (451)
.-++..+|||+-+--++-++-.|+.|-+++|+||.+|++|+|.|.-++|+ ...-+ |-.+|+|
T Consensus 438 ie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~~rKfDG~~fRwissGEYIQ 516 (1041)
T KOG0948|consen 438 IENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TAVRKFDGKKFRWISSGEYIQ 516 (1041)
T ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-eeccccCCcceeeecccceEE
Confidence 11367799999999999999999999999999999999999999655554 22222 6678999
Q ss_pred HhcccCCCCC--CcEEEEEeecc-cHHHHhhhhcC
Q psy10478 318 EIGRAGRDGL--SSVCYTFYKTA-DFTKNNMIFQP 349 (451)
Q Consensus 318 r~GRagR~g~--~g~~i~l~~~~-d~~~~~~~~~~ 349 (451)
+.|||||.|. .|.+|++++.. +....+.++..
T Consensus 517 MSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG 551 (1041)
T KOG0948|consen 517 MSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKG 551 (1041)
T ss_pred ecccccccCCCCCceEEEEecCcCCHHHHHHHhcC
Confidence 9999999995 48888887754 33334444444
No 74
>KOG0947|consensus
Probab=99.89 E-value=2.2e-22 Score=207.32 Aligned_cols=310 Identities=18% Similarity=0.199 Sum_probs=208.9
Q ss_pred HHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 21 KRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 21 ~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
.|..++..+....+..+.|+...|.+..+|+..++.. ...++.+|+||-+.+++++|+.+-..+.-+ - ...-
T Consensus 301 FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--~h~TR~iYTSPIKALSNQKfRDFk~tF~Dv-----g-LlTG 372 (1248)
T KOG0947|consen 301 FQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--KHMTRTIYTSPIKALSNQKFRDFKETFGDV-----G-LLTG 372 (1248)
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--hhccceEecchhhhhccchHHHHHHhcccc-----c-eeec
Confidence 4556666666656666655555566668888877644 667899999999999999777665554100 0 1111
Q ss_pred CCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccC--CCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 101 GHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQW--GHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~--g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
..+.+|...++......+.+.++...+-+.++.+||+||+|.+.+. |.-| .++ +...++.+++|++|||.|+
T Consensus 373 DvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVW----EEV--iIMlP~HV~~IlLSATVPN 446 (1248)
T KOG0947|consen 373 DVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVW----EEV--IIMLPRHVNFILLSATVPN 446 (1248)
T ss_pred ceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccc----eee--eeeccccceEEEEeccCCC
Confidence 2347788888877777777777777776778999999999999753 4322 222 3444668999999999998
Q ss_pred HHHHHHHHhcCCCCC-eEEecCC-CCC-ceEEEEEecc------------------------------------------
Q psy10478 179 VVIDDICTSLMLRDP-NIINTGF-DRP-NLYLAASVKQ------------------------------------------ 213 (451)
Q Consensus 179 ~~~~~i~~~l~l~~~-~~~~~~~-~~~-~l~~~~~~~~------------------------------------------ 213 (451)
.. +++.|.|-... .+...+. .|| ++......+.
T Consensus 447 ~~--EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~r 524 (1248)
T KOG0947|consen 447 TL--EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGR 524 (1248)
T ss_pred hH--HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccc
Confidence 76 55777764332 2222332 222 1111111000
Q ss_pred ------------------------h---hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC------------
Q psy10478 214 ------------------------D---DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN------------ 254 (451)
Q Consensus 214 ------------------------~---~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~------------ 254 (451)
. ...-.+...+... .--|+||||-|++.|++.+.+|...
T Consensus 525 gs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~--~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~ 602 (1248)
T KOG0947|consen 525 GSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK--NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVH 602 (1248)
T ss_pred cccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc--ccCceEEEEEccccHHHHHHHHhccCcccchhHHHHH
Confidence 0 0011222222221 3347999999999999999999731
Q ss_pred ---------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeC
Q psy10478 255 ---------------------------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307 (451)
Q Consensus 255 ---------------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~ 307 (451)
.-.++.+|||+-+-.++-++..|..|-++||+||.+|+||+|.|.-.+|+ -.
T Consensus 603 lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF-~S 681 (1248)
T KOG0947|consen 603 LFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF-SS 681 (1248)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe-ee
Confidence 11467899999999999999999999999999999999999999655554 33
Q ss_pred CCC---------CHHHHHHHhcccCCCCC--CcEEEEEeecc--cHHHHhhhhcC
Q psy10478 308 APK---------DLSAYYQEIGRAGRDGL--SSVCYTFYKTA--DFTKNNMIFQP 349 (451)
Q Consensus 308 ~p~---------s~~~y~Qr~GRagR~g~--~g~~i~l~~~~--d~~~~~~~~~~ 349 (451)
..+ ++.+|.|++|||||.|- .|.++++.... +....+.++-.
T Consensus 682 l~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G 736 (1248)
T KOG0947|consen 682 LRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMG 736 (1248)
T ss_pred hhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcC
Confidence 332 67899999999999995 57777765543 44555555554
No 75
>PRK13766 Hef nuclease; Provisional
Probab=99.89 E-value=1.4e-21 Score=213.51 Aligned_cols=112 Identities=24% Similarity=0.344 Sum_probs=103.6
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCC--------CCHHHHHHHHHHhhcCCceEEEEccccccccccCCc
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAH--------ISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDV 300 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~--------l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v 300 (451)
..+.++||||+++..++.+++.|...|+.+..+||. |++.+|..+++.|++|+.++||||+++++|+|+|++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 367899999999999999999999999999999886 999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 301 RCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 301 ~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
++||+||+|.+...|+||+||+||.| +|.+++++.....+
T Consensus 443 ~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~e 482 (773)
T PRK13766 443 DLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTRD 482 (773)
T ss_pred CEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCChH
Confidence 99999999999999999999999987 47888887765543
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.89 E-value=2e-22 Score=217.26 Aligned_cols=313 Identities=21% Similarity=0.257 Sum_probs=226.6
Q ss_pred HHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc-CCCeeEEEeCccccccchh---hHhhhhhhhhhhcccc
Q psy10478 19 MMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC-DNCRQVVYMTPEYVTNNTS---FLSRIPRIVLIAIDEA 94 (451)
Q Consensus 19 ~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~-~~~~~vl~~tPe~l~~~~~---~~~~l~~~~~~~~de~ 94 (451)
+...+...+.+...+++.++++-++||+|......+++.+. .++.+-||+-|.+++.+.+ +.+...++.. .+
T Consensus 71 lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~----~v 146 (851)
T COG1205 71 LYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPG----KV 146 (851)
T ss_pred ccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCC----cc
Confidence 55667777777788899999999999999999988888755 4456789999999998662 2333333210 00
Q ss_pred eeccccCCC-----CcchhhcccccccCCCCchhhhc-c-------ccCcccEEEEccccccc-cCCCCcHHHHHHHHHh
Q psy10478 95 HCVSQWGHD-----FRPSYRCLSELRLPLPDVPILFL-S-------RIPRIVLIAIDEAHCVS-QWGHDFRPSYRCLSEL 160 (451)
Q Consensus 95 ~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~l-~-------~l~~l~~vViDEah~~~-~~g~~fr~~~~~l~~l 160 (451)
.. ...+.+ .+..+...++++...|..+-..+ . .+.++++||+||+|..- -.|.++.-.+++|..+
T Consensus 147 ~~-~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~ 225 (851)
T COG1205 147 TF-GRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRR 225 (851)
T ss_pred ee-eeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHH
Confidence 11 111112 23456777888888888775532 1 15679999999999874 3566677777888777
Q ss_pred hccCC-CCCEEEEEeeCChHHHHHHHHhcCCCCCeE-EecC-CCCCceEEEEEec---------chhHHHHHHHHHhhcc
Q psy10478 161 RLPLP-DVPILAVTATATPVVIDDICTSLMLRDPNI-INTG-FDRPNLYLAASVK---------QDDIMADLRKLTNFEN 228 (451)
Q Consensus 161 ~~~~~-~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~-~~~~-~~~~~l~~~~~~~---------~~~~~~~L~~~l~~~~ 228 (451)
....+ +.++++.|||..... .....+...+... +..+ ..+...++..... .......+..++....
T Consensus 226 ~~~~~~~~q~i~~SAT~~np~--e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~ 303 (851)
T COG1205 226 LRRYGSPLQIICTSATLANPG--EFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLV 303 (851)
T ss_pred HhccCCCceEEEEeccccChH--HHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHH
Confidence 66655 678999999986654 2244443333333 3322 2222233333222 1244455555555555
Q ss_pred CCCCcEEEEcCChhHHHHHH----HHHHHCC----CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCc
Q psy10478 229 QFEGSTIIYCPTKVICEKVC----DVLSRNG----IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDV 300 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~----~~L~~~~----~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v 300 (451)
..+-++|+|+.++..++.++ ..+...+ ..+..|+|+|..++|.+++..|++|++.++++|+++.-|||+.++
T Consensus 304 ~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~l 383 (851)
T COG1205 304 RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSL 383 (851)
T ss_pred HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhh
Confidence 58899999999999999997 3444444 568999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCC-CHHHHHHHhcccCCCCCCcEEEEEeecc
Q psy10478 301 RCVIHYGAPK-DLSAYYQEIGRAGRDGLSSVCYTFYKTA 338 (451)
Q Consensus 301 ~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 338 (451)
+.||..+.|. +..++.|++|||||.++.+..++.+..+
T Consensus 384 davi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 384 DAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred hhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 9999999999 9999999999999999777777766643
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=2.3e-22 Score=210.65 Aligned_cols=282 Identities=14% Similarity=0.126 Sum_probs=175.9
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSE 113 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 113 (451)
+.++++..+++|+|.--...+. .+ +.++||++|...+..+ |.+.+....- ++...++.-.| +.+........
T Consensus 274 r~GIIvLPtGaGKTlvai~aa~-~l---~k~tLILvps~~Lv~Q-W~~ef~~~~~--l~~~~I~~~tg-~~k~~~~~~~~ 345 (732)
T TIGR00603 274 RSGIIVLPCGAGKSLVGVTAAC-TV---KKSCLVLCTSAVSVEQ-WKQQFKMWST--IDDSQICRFTS-DAKERFHGEAG 345 (732)
T ss_pred CCcEEEeCCCCChHHHHHHHHH-Hh---CCCEEEEeCcHHHHHH-HHHHHHHhcC--CCCceEEEEec-CcccccccCCc
Confidence 5678888899999876533221 12 3468999998887666 7776655421 11112211111 11111111122
Q ss_pred cccCCCCchh----------hhcccc--CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHH
Q psy10478 114 LRLPLPDVPI----------LFLSRI--PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVI 181 (451)
Q Consensus 114 l~~~~~~~~~----------~~l~~l--~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~ 181 (451)
+++.|.+... ..+..+ ..+++||+||||.+.. +.++.+.. .+.....++||||+....-
T Consensus 346 VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA------~~fr~il~---~l~a~~RLGLTATP~ReD~ 416 (732)
T TIGR00603 346 VVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA------AMFRRVLT---IVQAHCKLGLTATLVREDD 416 (732)
T ss_pred EEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH------HHHHHHHH---hcCcCcEEEEeecCcccCC
Confidence 3333332111 111112 3689999999998843 44444322 2234568999999965331
Q ss_pred --HHHHHhcCCCCCeEEecC--------CCCCceEEEEEe-----------------------cchhHHHHHHHHHhhcc
Q psy10478 182 --DDICTSLMLRDPNIINTG--------FDRPNLYLAASV-----------------------KQDDIMADLRKLTNFEN 228 (451)
Q Consensus 182 --~~i~~~l~l~~~~~~~~~--------~~~~~l~~~~~~-----------------------~~~~~~~~L~~~l~~~~ 228 (451)
.++...+ .|.++..+ .-.+...+.+.. ....++..+..+++.+.
T Consensus 417 ~~~~L~~Li---GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he 493 (732)
T TIGR00603 417 KITDLNFLI---GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHE 493 (732)
T ss_pred chhhhhhhc---CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHh
Confidence 1121111 23332221 000111111110 11234455555666544
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC-CceEEEEccccccccccCCccEEEEeC
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD-LIKVVVATCAFGMGIDKPDVRCVIHYG 307 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiD~p~v~~VI~~~ 307 (451)
..+.++||||++...++.+++.|. +..+||+++..+|.++++.|++| .+++||+|+++++|||+|++++||+++
T Consensus 494 ~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s 568 (732)
T TIGR00603 494 QRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQIS 568 (732)
T ss_pred hcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeC
Confidence 478899999999999999988773 56789999999999999999875 889999999999999999999999999
Q ss_pred CC-CCHHHHHHHhcccCCCCCCcEE-------EEEeecccH
Q psy10478 308 AP-KDLSAYYQEIGRAGRDGLSSVC-------YTFYKTADF 340 (451)
Q Consensus 308 ~p-~s~~~y~Qr~GRagR~g~~g~~-------i~l~~~~d~ 340 (451)
.| .|..+|+||+||++|.+..|.+ +.++++...
T Consensus 569 ~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 569 SHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred CCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 87 5999999999999998765553 667766543
No 78
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.5e-21 Score=202.37 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=134.3
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCce----EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNL----YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+.+||||+... .+++.+.+++. ++..+.++|+. ...+......+...|...+......+.++||||+|++.
T Consensus 410 kl~GmTGTa~~~-~~El~~~y~l~---vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREV-AGELWSVYGLP---VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHH-HHHHHHHHCCC---eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 467999999864 46677777654 44556666654 21222233567778888887654457889999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccC---Ccc-----EEEEeCCCCCHHHH
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP---DVR-----CVIHYGAPKDLSAY 315 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p---~v~-----~VI~~~~p~s~~~y 315 (451)
++.+++.|.+.|+++..+||.++. |+..+..|..+...|+|||++++||+|++ +|. +||+++.|.+...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 999999999999999999998664 44445556656667999999999999999 776 99999999999999
Q ss_pred HHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 316 YQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 316 ~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
.||+||+||.|.+|.++.|++.+|.-
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhHHH
Confidence 99999999999999999999987643
No 79
>KOG0952|consensus
Probab=99.88 E-value=1.6e-21 Score=203.23 Aligned_cols=308 Identities=16% Similarity=0.144 Sum_probs=211.1
Q ss_pred hcccchhhhhhcCCCChhhhcCcCcccc---------CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCC
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCC---------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGH 102 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~---------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~ 102 (451)
...+-++.|-+|||+|.-...-++..++ .+.++|+|.+|-+.+..+....+.++++-+. +.....++
T Consensus 125 SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~g----i~v~ELTG 200 (1230)
T KOG0952|consen 125 SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLG----ISVRELTG 200 (1230)
T ss_pred CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccccc----ceEEEecC
Confidence 3456777999999999766555555555 4889999999999998764444444442100 11122222
Q ss_pred C--CcchhhcccccccCCCCchhhhccc-------cCcccEEEEcccccccc-CCCCcHHHHHHHHHhh-ccCCCCCEEE
Q psy10478 103 D--FRPSYRCLSELRLPLPDVPILFLSR-------IPRIVLIAIDEAHCVSQ-WGHDFRPSYRCLSELR-LPLPDVPILA 171 (451)
Q Consensus 103 ~--~~~~~~~~~~l~~~~~~~~~~~l~~-------l~~l~~vViDEah~~~~-~g~~fr~~~~~l~~l~-~~~~~~~~v~ 171 (451)
| +....-.-.++++.||+.+-..-++ ++.+++|||||+|.+-+ .|........+..++. .....+++|+
T Consensus 201 D~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivg 280 (1230)
T KOG0952|consen 201 DTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVG 280 (1230)
T ss_pred cchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEE
Confidence 3 2223334467888899888654332 46799999999999864 3432223333332222 2235788999
Q ss_pred EEeeCChHHHHHHHHhcCCCCC--eEEecCCCCCc-eEEEEE---ec-c--------hhHHHHHHHHHhhccCCCCcEEE
Q psy10478 172 VTATATPVVIDDICTSLMLRDP--NIINTGFDRPN-LYLAAS---VK-Q--------DDIMADLRKLTNFENQFEGSTII 236 (451)
Q Consensus 172 lSAT~~~~~~~~i~~~l~l~~~--~~~~~~~~~~~-l~~~~~---~~-~--------~~~~~~L~~~l~~~~~~~~~~iV 236 (451)
+|||+|+-. |++.+|+.+.+ ........||- +...+. .+ . +...+.+.+.+ ..+.+++|
T Consensus 281 LSATlPN~e--DvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~----~~g~qVlv 354 (1230)
T KOG0952|consen 281 LSATLPNYE--DVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL----QEGHQVLV 354 (1230)
T ss_pred eeccCCCHH--HHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH----HcCCeEEE
Confidence 999999854 88999988633 23333344442 222111 11 0 11223333333 37899999
Q ss_pred EcCChhHHHHHHHHHHHC-----------------------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q psy10478 237 YCPTKVICEKVCDVLSRN-----------------------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293 (451)
Q Consensus 237 F~~t~~~~~~l~~~L~~~-----------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~ 293 (451)
||.+++.+...|+.|.+. ......+|+||...+|.-+++.|..|.++||+||..++.
T Consensus 355 FvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAw 434 (1230)
T KOG0952|consen 355 FVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAW 434 (1230)
T ss_pred EEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeee
Confidence 999999999999998752 124678999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCC-----CC------CHHHHHHHhcccCCCC--CCcEEEEEeecccHHHHhhhhcCC
Q psy10478 294 GIDKPDVRCVIHYGA-----PK------DLSAYYQEIGRAGRDG--LSSVCYTFYKTADFTKNNMIFQPN 350 (451)
Q Consensus 294 GiD~p~v~~VI~~~~-----p~------s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~~~~~~~~~~~ 350 (451)
|+|+|+- .||..|. .+ +.-+.+|..|||||-+ ..|.++++.+.+....+..++...
T Consensus 435 GVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~ 503 (1230)
T KOG0952|consen 435 GVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQ 503 (1230)
T ss_pred ccCCcce-EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCC
Confidence 9999965 4554333 32 5778899999999974 679999999998888888777764
No 80
>KOG0349|consensus
Probab=99.87 E-value=5.1e-22 Score=189.26 Aligned_cols=280 Identities=16% Similarity=0.195 Sum_probs=183.1
Q ss_pred CcCCCCChhhHHHHHHHHHHHHHHHHhhhhhc--ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhh
Q psy10478 2 IFQPNLNDSEIQEHSKTMMKRVEKYLELRTCR--RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSF 79 (451)
Q Consensus 2 ~~~~~~~~~~i~~~~~~~~~q~~~~~~~~~~~--~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~ 79 (451)
.+.||...+-|+++.+++.+|...-++.-.-+ ...+....+-++.-..+.. ...+ ..++|+++||.+++...
T Consensus 281 k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~---~ql~-~g~~ivvGtpgRl~~~i-- 354 (725)
T KOG0349|consen 281 KPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQC---KQLK-DGTHIVVGTPGRLLQPI-- 354 (725)
T ss_pred ccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHH---HHhh-cCceeeecCchhhhhhh--
Confidence 35688888888888888888877643321110 1111122223333222222 2223 34899999999998643
Q ss_pred HhhhhhhhhhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHH
Q psy10478 80 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSE 159 (451)
Q Consensus 80 ~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~ 159 (451)
..-+- .+...+++|+|||+.++..| +...+.++..
T Consensus 355 s~g~~-------------------------------------------~lt~crFlvlDead~lL~qg--y~d~I~r~h~ 389 (725)
T KOG0349|consen 355 SKGLV-------------------------------------------TLTHCRFLVLDEADLLLGQG--YDDKIYRFHG 389 (725)
T ss_pred hccce-------------------------------------------eeeeeEEEEecchhhhhhcc--cHHHHHHHhc
Confidence 11111 12458899999999998766 4444433321
Q ss_pred -hhccC---CCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecC-------------------C----------------
Q psy10478 160 -LRLPL---PDVPILAVTATATPVVIDDICTSLMLRDPNIINTG-------------------F---------------- 200 (451)
Q Consensus 160 -l~~~~---~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~-------------------~---------------- 200 (451)
+...- ...+.++.|||+..-....+.+.+ +.-|..+... .
T Consensus 390 qip~~tsdg~rlq~~vCsatlh~feVkk~~erv-mhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~v 468 (725)
T KOG0349|consen 390 QIPHMTSDGFRLQSPVCSATLHIFEVKKVGERV-MHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKV 468 (725)
T ss_pred cchhhhcCCcccccceeeeEEeEEEeeehhhhh-ccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCc
Confidence 11111 246788999997643322222221 1112111110 0
Q ss_pred -CCCceEEEEEecchhHHHHHHH---------HHhhccCCCCcEEEEcCChhHHHHHHHHHHHCC---CCeeeecCCCCH
Q psy10478 201 -DRPNLYLAASVKQDDIMADLRK---------LTNFENQFEGSTIIYCPTKVICEKVCDVLSRNG---IQNRPYHAHISL 267 (451)
Q Consensus 201 -~~~~l~~~~~~~~~~~~~~L~~---------~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~---~~v~~~h~~l~~ 267 (451)
.+.|+...-. ..+....-.+ .++.+ .-.++||||.|+..|+.|.+.+.+.| +.+.++||+..+
T Consensus 469 h~kdn~~pg~~--Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP 544 (725)
T KOG0349|consen 469 HTKDNLLPGQV--SPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKP 544 (725)
T ss_pred ccccccccccC--CCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCCh
Confidence 0011100000 0011111111 12222 55789999999999999999999874 789999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeec
Q psy10478 268 KQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKT 337 (451)
Q Consensus 268 ~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~ 337 (451)
.||.+.++.|+.+.++.||||++++||+|+..+-++|+..+|.+...|+||+||.||+.+-|.+|.++..
T Consensus 545 ~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 545 DERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999764
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=3.3e-21 Score=205.84 Aligned_cols=239 Identities=21% Similarity=0.213 Sum_probs=193.9
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR 115 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~ 115 (451)
.|....++.-.+.+|...+++.+++|+++|||+|.--|..+-
T Consensus 671 PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv-------------------------------------- 712 (1139)
T COG1197 671 PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDV-------------------------------------- 712 (1139)
T ss_pred CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCc--------------------------------------
Confidence 345666777888999999999999999999999987665432
Q ss_pred cCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeE
Q psy10478 116 LPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNI 195 (451)
Q Consensus 116 ~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~ 195 (451)
.+++++++||||-|++.- .-. ..|.. ...++-++-||||+-|.+.. +...|+++-.+
T Consensus 713 ------------~FkdLGLlIIDEEqRFGV---k~K---EkLK~---Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSv 769 (1139)
T COG1197 713 ------------KFKDLGLLIIDEEQRFGV---KHK---EKLKE---LRANVDVLTLSATPIPRTLN--MSLSGIRDLSV 769 (1139)
T ss_pred ------------EEecCCeEEEechhhcCc---cHH---HHHHH---HhccCcEEEeeCCCCcchHH--HHHhcchhhhh
Confidence 125899999999998732 111 22333 34679999999999999988 88889998888
Q ss_pred EecCC-CCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC--CCCeeeecCCCCHHHHHH
Q psy10478 196 INTGF-DRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN--GIQNRPYHAHISLKQRKE 272 (451)
Q Consensus 196 ~~~~~-~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~--~~~v~~~h~~l~~~~R~~ 272 (451)
+..++ +|-.+...+...++.. +.+.+......++++...+|.++..+.+++.|++. ..++..-||.|+..+-+.
T Consensus 770 I~TPP~~R~pV~T~V~~~d~~~---ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~ 846 (1139)
T COG1197 770 IATPPEDRLPVKTFVSEYDDLL---IREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEE 846 (1139)
T ss_pred ccCCCCCCcceEEEEecCChHH---HHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHH
Confidence 87654 4555655555544332 33333333348999999999999999999999987 567889999999999999
Q ss_pred HHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCcEEEEEeecc
Q psy10478 273 IHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK-DLSAYYQEIGRAGRDGLSSVCYTFYKTA 338 (451)
Q Consensus 273 ~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 338 (451)
++.+|.+|+.+|||||.+.+.|||+|+++.+|.-+..+ ..++++|..||+||..+.+.|+++|.+.
T Consensus 847 vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 847 VMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred HHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999999999999999999999998877665 8999999999999999999999999864
No 82
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.86 E-value=3.4e-21 Score=214.03 Aligned_cols=210 Identities=18% Similarity=0.250 Sum_probs=144.2
Q ss_pred hhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccccCCC
Q psy10478 40 HFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP 119 (451)
Q Consensus 40 ~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (451)
..++|+.+..++...++.+.+|..+||++||.++..+. . .+
T Consensus 156 ~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~---~---~l--------------------------------- 196 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNY---D---EL--------------------------------- 196 (1171)
T ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHH---H---Hh---------------------------------
Confidence 35678888887777777788888999999999876421 1 12
Q ss_pred CchhhhccccCcccEEEEccccccccCC---------CCcHHH-HHHHH-------------------HhhccC-CCCC-
Q psy10478 120 DVPILFLSRIPRIVLIAIDEAHCVSQWG---------HDFRPS-YRCLS-------------------ELRLPL-PDVP- 168 (451)
Q Consensus 120 ~~~~~~l~~l~~l~~vViDEah~~~~~g---------~~fr~~-~~~l~-------------------~l~~~~-~~~~- 168 (451)
. .+++++||||||++++++ .+|.+. ...+. ...... ...+
T Consensus 197 -------~--~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 267 (1171)
T TIGR01054 197 -------G--PKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRG 267 (1171)
T ss_pred -------c--CCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCc
Confidence 0 159999999999999854 226553 22211 111122 2334
Q ss_pred -EEEEEeeC-ChHHHHHHHHhcCCCCCeEEecCCCC---CceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCCh--
Q psy10478 169 -ILAVTATA-TPVVIDDICTSLMLRDPNIINTGFDR---PNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTK-- 241 (451)
Q Consensus 169 -~v~lSAT~-~~~~~~~i~~~l~l~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~-- 241 (451)
++++|||. +......+. .+...+..+... .++........ .....|..+++. .+.++||||+|+
T Consensus 268 ~li~~SAT~~p~~~~~~l~-----r~ll~~~v~~~~~~~r~I~~~~~~~~-~~~~~L~~ll~~---l~~~~IVFv~t~~~ 338 (1171)
T TIGR01054 268 CLIVSSATGRPRGKRAKLF-----RELLGFEVGGGSDTLRNVVDVYVEDE-DLKETLLEIVKK---LGTGGIVYVSIDYG 338 (1171)
T ss_pred EEEEEeCCCCccccHHHHc-----ccccceEecCccccccceEEEEEecc-cHHHHHHHHHHH---cCCCEEEEEecccc
Confidence 56789995 443332222 222222222211 23222211111 223456666654 356899999999
Q ss_pred -hHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEE----ccccccccccCC-ccEEEEeCCCC
Q psy10478 242 -VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVA----TCAFGMGIDKPD-VRCVIHYGAPK 310 (451)
Q Consensus 242 -~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiD~p~-v~~VI~~~~p~ 310 (451)
+.|+.+++.|.+.|+++..+||+++ +.+++.|++|+++|||| |++++||||+|+ |++||+||+|+
T Consensus 339 ~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 339 KEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999999999999999999999997 37899999999999999 489999999999 89999999997
No 83
>KOG0329|consensus
Probab=99.86 E-value=1.8e-22 Score=180.44 Aligned_cols=236 Identities=21% Similarity=0.333 Sum_probs=162.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhh
Q psy10478 8 NDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIV 87 (451)
Q Consensus 8 ~~~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~ 87 (451)
.+||+.-+|..-.+.+.++.+--. .+.|++ |.....-.. .+ ....+|+++||++++..- +.. .+
T Consensus 118 htrelafqi~~ey~rfskymP~vk------vaVFfG-G~~Ikkdee---~l-k~~PhivVgTPGrilALv--r~k--~l- 181 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVK------VSVFFG-GLFIKKDEE---LL-KNCPHIVVGTPGRILALV--RNR--SL- 181 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCce------EEEEEc-ceeccccHH---HH-hCCCeEEEcCcHHHHHHH--Hhc--cC-
Confidence 367888888877777777766422 144544 444332122 22 337899999999997521 111 11
Q ss_pred hhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCC
Q psy10478 88 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 167 (451)
Q Consensus 88 ~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~ 167 (451)
.++++..+|+|||+.++++- ++|.+...+ ++..+++.
T Consensus 182 ----------------------------------------~lk~vkhFvlDEcdkmle~l-DMrRDvQEi--fr~tp~~K 218 (387)
T KOG0329|consen 182 ----------------------------------------NLKNVKHFVLDECDKMLEQL-DMRRDVQEI--FRMTPHEK 218 (387)
T ss_pred ----------------------------------------chhhcceeehhhHHHHHHHH-HHHHHHHHH--hhcCcccc
Confidence 13579999999999998753 467777776 55566789
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCC-Cce----EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChh
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDR-PNL----YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKV 242 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~-~~l----~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~ 242 (451)
|++.+|||++.+.+. +.+.+ +.+|..+...... -.+ .|.+..+..++...+.+++... .-.+++||+.|..
T Consensus 219 QvmmfsatlskeiRp-vC~kF-mQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~L--eFNQVvIFvKsv~ 294 (387)
T KOG0329|consen 219 QVMMFSATLSKEIRP-VCHKF-MQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVL--EFNQVVIFVKSVQ 294 (387)
T ss_pred eeeeeeeecchhhHH-HHHhh-hcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh--hhcceeEeeehhh
Confidence 999999999988765 34433 4566443332111 111 2233333445555566665554 5679999998876
Q ss_pred HHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhccc
Q psy10478 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRA 322 (451)
Q Consensus 243 ~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRa 322 (451)
.. + | .-+ +|||++++||+|+..|+.|+|||+|.+..+|+||+|||
T Consensus 295 Rl---------------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rA 339 (387)
T KOG0329|consen 295 RL---------------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 339 (387)
T ss_pred hh---------------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhh
Confidence 51 0 2 123 89999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEeecccHH
Q psy10478 323 GRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 323 gR~g~~g~~i~l~~~~d~~ 341 (451)
||.|..|.++.|++.++-.
T Consensus 340 grfGtkglaitfvs~e~da 358 (387)
T KOG0329|consen 340 GRFGTKGLAITFVSDENDA 358 (387)
T ss_pred hccccccceeehhcchhhH
Confidence 9999999999998865443
No 84
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.9e-20 Score=197.99 Aligned_cols=168 Identities=20% Similarity=0.180 Sum_probs=138.7
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEE----EEecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLA----ASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+.+||+|+..+. +.+.+.. +-.++..++++|..... +......+...+...+......+.++||||+|++.
T Consensus 365 kl~GmTGTa~t~~-~e~~~~Y---~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEE-KEFFEVY---NMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHH-HHHHHHh---CCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 4679999985433 4454444 34567778888865432 22233567777887776654478999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccccc---CCcc-----EEEEeCCCCCHHHH
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDK---PDVR-----CVIHYGAPKDLSAY 315 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~---p~v~-----~VI~~~~p~s~~~y 315 (451)
++.++..|.+.|+++..+||.+...++..+...+..| +|+|||++++||+|+ |+|. +||+++.|.+...|
T Consensus 441 se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y 518 (790)
T PRK09200 441 SETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVD 518 (790)
T ss_pred HHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHH
Confidence 9999999999999999999999998888888877766 799999999999999 7999 99999999999999
Q ss_pred HHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 316 YQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 316 ~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
.||+||+||.|.+|.++.|++.+|.-
T Consensus 519 ~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 519 LQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred HHhhccccCCCCCeeEEEEEcchHHH
Confidence 99999999999999999999876643
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.84 E-value=1.1e-19 Score=195.54 Aligned_cols=285 Identities=16% Similarity=0.179 Sum_probs=174.4
Q ss_pred cchhhhhhcCCCChhhhcCcCccccC-CCeeEEEeCccccccchhhHhhhhh----h-hhhhcccceeccccCCCCcc--
Q psy10478 35 KYLLNHFKGSSVTMAESQVPPDKCCD-NCRQVVYMTPEYVTNNTSFLSRIPR----I-VLIAIDEAHCVSQWGHDFRP-- 106 (451)
Q Consensus 35 ~~i~a~~~~s~~~~~e~~~~~~~~~~-~~~~vl~~tPe~l~~~~~~~~~l~~----~-~~~~~de~~~~~~~~~~~~~-- 106 (451)
..++-+.+++|+|.+-...+...+.. +.-+|+|+.|.+...+. ..+++.. . .-..+-.+|........|..
T Consensus 303 l~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~-m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~ 381 (878)
T PRK09694 303 LTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANA-MLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLK 381 (878)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHH-HHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhh
Confidence 45677889999998865544332223 34589999999998776 4443322 1 00112223332221111110
Q ss_pred ------------------------hhhcccccccCCCCchhhhc--------cccC-cccEEEEccccccccCCCCcHHH
Q psy10478 107 ------------------------SYRCLSELRLPLPDVPILFL--------SRIP-RIVLIAIDEAHCVSQWGHDFRPS 153 (451)
Q Consensus 107 ------------------------~~~~~~~l~~~~~~~~~~~l--------~~l~-~l~~vViDEah~~~~~g~~fr~~ 153 (451)
....+..+.++|....+... +.++ .-++|||||+|.+..+ +...
T Consensus 382 ~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD~y---m~~l 458 (878)
T PRK09694 382 SRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYDAY---MYGL 458 (878)
T ss_pred cccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCCHH---HHHH
Confidence 01123677777776666322 1111 1248999999987432 1222
Q ss_pred HHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCC--------CeEE----------ecCCC----CCceEEEEEe
Q psy10478 154 YRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRD--------PNII----------NTGFD----RPNLYLAASV 211 (451)
Q Consensus 154 ~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~--------~~~~----------~~~~~----~~~l~~~~~~ 211 (451)
+..+...... .+.++|+||||+|...++.+.+.++... |.+. ..... .....+.+..
T Consensus 459 L~~~L~~l~~-~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 537 (878)
T PRK09694 459 LEAVLKAQAQ-AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEP 537 (878)
T ss_pred HHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEe
Confidence 2223222222 3688999999999998888777554221 1110 00000 0011111111
Q ss_pred c--ch-hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCC---CCeeeecCCCCHHHHH----HHHHHh-hcC
Q psy10478 212 K--QD-DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNG---IQNRPYHAHISLKQRK----EIHGLF-VKD 280 (451)
Q Consensus 212 ~--~~-~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~---~~v~~~h~~l~~~~R~----~~~~~f-~~g 280 (451)
. .. .....+.+.+......+++++|||||++.++.+++.|++.+ ..+..+||.++..+|. ++++.| ++|
T Consensus 538 ~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g 617 (878)
T PRK09694 538 ICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNG 617 (878)
T ss_pred eccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcC
Confidence 1 10 11122222222222367899999999999999999999864 6799999999999994 466677 556
Q ss_pred C---ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCC
Q psy10478 281 L---IKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 281 ~---~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 327 (451)
+ ..|||||+++++|+|+ +++++|....| +..|+||+||+||.+.
T Consensus 618 ~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 618 KRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 5 4799999999999999 68999998888 7899999999999875
No 86
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.84 E-value=7.7e-20 Score=192.74 Aligned_cols=125 Identities=22% Similarity=0.237 Sum_probs=112.6
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccc
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi 295 (451)
.++.|...+......+.++||||+|++.++.+++.|.+.|+.+..+||+++..+|.+++..|++|++.|+|||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 34555555555445788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEeC-----CCCCHHHHHHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 296 DKPDVRCVIHYG-----APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 296 D~p~v~~VI~~~-----~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
|+|++++||+++ .|.+..+|+||+||+||. ..|.+++|++..+..
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~ 556 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDS 556 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHH
Confidence 999999999988 799999999999999998 589999998866544
No 87
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.83 E-value=2.2e-19 Score=188.36 Aligned_cols=167 Identities=16% Similarity=0.151 Sum_probs=138.7
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEE----EEecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLA----ASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
++.+||+|+..+ ..++.+.. +-.++..++++|..... +......+...+...+......+.++||||+|+..
T Consensus 361 kl~GmTGTa~~~-~~Ef~~iY---~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~ 436 (762)
T TIGR03714 361 KLSGMTGTGKVA-EKEFIETY---SLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEM 436 (762)
T ss_pred hhcccCCCChhH-HHHHHHHh---CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHH
Confidence 467999998543 34455443 44567888888876543 22233567788888777655588999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccC---------CccEEEEeCCCCCHHH
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP---------DVRCVIHYGAPKDLSA 314 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p---------~v~~VI~~~~p~s~~~ 314 (451)
++.++..|.+.|+++..+||.+...++..+..+++.| .|+|||++++||+|+| ++.+|++++.|....+
T Consensus 437 se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid 514 (762)
T TIGR03714 437 SEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD 514 (762)
T ss_pred HHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH
Confidence 9999999999999999999999999988888777777 7999999999999999 9999999999998877
Q ss_pred HHHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 315 YYQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 315 y~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
.||+||+||.|.+|.++.|++.+|.-
T Consensus 515 -~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 515 -LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred -HHhhhcccCCCCceeEEEEEccchhh
Confidence 99999999999999999999987653
No 88
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.83 E-value=2.1e-19 Score=182.75 Aligned_cols=270 Identities=20% Similarity=0.248 Sum_probs=172.3
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCC-Ccchhhcc
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHD-FRPSYRCL 111 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~-~~~~~~~~ 111 (451)
.+.+++...+++|+|.-....+... ..++||++|...+..+ |.+.+....... + .. +.++.. .+...
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~~~----~~~~Lvlv~~~~L~~Q-w~~~~~~~~~~~-~--~~-g~~~~~~~~~~~--- 122 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIAEL----KRSTLVLVPTKELLDQ-WAEALKKFLLLN-D--EI-GIYGGGEKELEP--- 122 (442)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHh----cCCEEEEECcHHHHHH-HHHHHHHhcCCc-c--cc-ceecCceeccCC---
Confidence 6778888999999997654433322 3349999999998877 755444331110 0 11 112211 11111
Q ss_pred cccccCCCCchhhh---cccc-CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHh
Q psy10478 112 SELRLPLPDVPILF---LSRI-PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187 (451)
Q Consensus 112 ~~l~~~~~~~~~~~---l~~l-~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~ 187 (451)
..+.+++-+..... .... ..+++||+||||+++. +.+..+...... ..++++||||++......+...
T Consensus 123 ~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a------~~~~~~~~~~~~--~~~~LGLTATp~R~D~~~~~~l 194 (442)
T COG1061 123 AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA------PSYRRILELLSA--AYPRLGLTATPEREDGGRIGDL 194 (442)
T ss_pred CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc------HHHHHHHHhhhc--ccceeeeccCceeecCCchhHH
Confidence 12333332222221 1111 2699999999998864 344444333221 2228999999875442112222
Q ss_pred cCCCCCeEEecC--------CCCCceEEEEEec-c-------------------------------------hhHHHHHH
Q psy10478 188 LMLRDPNIINTG--------FDRPNLYLAASVK-Q-------------------------------------DDIMADLR 221 (451)
Q Consensus 188 l~l~~~~~~~~~--------~~~~~l~~~~~~~-~-------------------------------------~~~~~~L~ 221 (451)
..+-.+.++..+ .-.|...+.+... . ..+...+.
T Consensus 195 ~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (442)
T COG1061 195 FDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVR 274 (442)
T ss_pred HHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHH
Confidence 222223333322 1122222222210 0 11122223
Q ss_pred HHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCcc
Q psy10478 222 KLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVR 301 (451)
Q Consensus 222 ~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~ 301 (451)
.++.... .+.+++|||.+..+++.++..+...++ +..+.|..+..+|..+++.|+.|++++||++.++.+|+|+|+++
T Consensus 275 ~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~ 352 (442)
T COG1061 275 GLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDAD 352 (442)
T ss_pred HHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCc
Confidence 3333333 578999999999999999999998888 89999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCC
Q psy10478 302 CVIHYGAPKDLSAYYQEIGRAGR 324 (451)
Q Consensus 302 ~VI~~~~p~s~~~y~Qr~GRagR 324 (451)
++|......|...|.||+||.-|
T Consensus 353 ~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 353 VLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999
No 89
>KOG0354|consensus
Probab=99.83 E-value=4.2e-19 Score=183.03 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=95.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC---CCCeeee--------cCCCCHHHHHHHHHHhhcCCceEEEEccccccccccC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN---GIQNRPY--------HAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~---~~~v~~~--------h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p 298 (451)
+..++||||.+|..|..+.++|.+. |++...+ ..+|++.++.++++.|++|+++|||||+++++|+|++
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 5678999999999999999999842 3333333 3489999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 299 ~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
.++.||.||...|+...+||.|| ||.- .|.++++++.....
T Consensus 492 ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~~ 532 (746)
T KOG0354|consen 492 ECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEVI 532 (746)
T ss_pred cccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchhHH
Confidence 99999999999999999999999 9984 78888888854443
No 90
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.1e-19 Score=190.13 Aligned_cols=308 Identities=16% Similarity=0.146 Sum_probs=217.9
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceecc---ccCCCCcchhh
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVS---QWGHDFRPSYR 109 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~---~~~~~~~~~~~ 109 (451)
....+....++||+|......+.+.++.| -++|++.||..+.++.+.++-..++ ..+...|... +-...|+....
T Consensus 217 ~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS~Ls~~er~~~W~~~~~ 294 (730)
T COG1198 217 FAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG-AKVAVLHSGLSPGERYRVWRRARR 294 (730)
T ss_pred ccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhC-CChhhhcccCChHHHHHHHHHHhc
Confidence 45566688899999988877777777777 5999999999999883333333343 4445555442 22244777777
Q ss_pred cccccccCCCCchhhhccccCcccEEEEccccccccCCC-CcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhc
Q psy10478 110 CLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGH-DFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSL 188 (451)
Q Consensus 110 ~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~-~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l 188 (451)
.-..+++++....+..+. ++++|||||-|.-+.... ..+..-+.++.++....++|+|+-|||++-+........
T Consensus 295 G~~~vVIGtRSAlF~Pf~---~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g- 370 (730)
T COG1198 295 GEARVVIGTRSALFLPFK---NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESG- 370 (730)
T ss_pred CCceEEEEechhhcCchh---hccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcC-
Confidence 778999999988887665 599999999998764322 245555778888888899999999999988776544221
Q ss_pred CCCCCeEEec-----CCCCCceEEEEEecchh-----HHHHHHHHHhhccCCCCcEEEEcCChhH---------------
Q psy10478 189 MLRDPNIINT-----GFDRPNLYLAASVKQDD-----IMADLRKLTNFENQFEGSTIIYCPTKVI--------------- 243 (451)
Q Consensus 189 ~l~~~~~~~~-----~~~~~~l~~~~~~~~~~-----~~~~L~~~l~~~~~~~~~~iVF~~t~~~--------------- 243 (451)
....+.. ...-|++.+........ ....|.+.++.....+.++|+|.|.+..
T Consensus 371 ---~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~C 447 (730)
T COG1198 371 ---KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAEC 447 (730)
T ss_pred ---ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccC
Confidence 0111111 11123333333222211 3356666676666688999999987665
Q ss_pred ---------------------------------------------HHHHHHHHHHC--CCCeeeecCCCCHH--HHHHHH
Q psy10478 244 ---------------------------------------------CEKVCDVLSRN--GIQNRPYHAHISLK--QRKEIH 274 (451)
Q Consensus 244 ---------------------------------------------~~~l~~~L~~~--~~~v~~~h~~l~~~--~R~~~~ 274 (451)
++++.+.|.+. +.++..+.++.... .-+..+
T Consensus 448 p~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l 527 (730)
T COG1198 448 PNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLL 527 (730)
T ss_pred CCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHH
Confidence 46666666665 56677777776543 346788
Q ss_pred HHhhcCCceEEEEccccccccccCCccEEEEeCCCC------------CHHHHHHHhcccCCCCCCcEEEEEeecccHHH
Q psy10478 275 GLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK------------DLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK 342 (451)
Q Consensus 275 ~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~ 342 (451)
+.|.+|+.+|||+|++++.|.|+|++..|...|... +...+.|-+|||||.+++|.+++-....|...
T Consensus 528 ~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~ 607 (730)
T COG1198 528 DQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPA 607 (730)
T ss_pred HHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHH
Confidence 999999999999999999999999999987655332 56788999999999999999988877777666
Q ss_pred HhhhhcC
Q psy10478 343 NNMIFQP 349 (451)
Q Consensus 343 ~~~~~~~ 349 (451)
++.+...
T Consensus 608 i~~~~~~ 614 (730)
T COG1198 608 IQALKRG 614 (730)
T ss_pred HHHHHhc
Confidence 6655554
No 91
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=4.6e-19 Score=188.07 Aligned_cols=122 Identities=24% Similarity=0.259 Sum_probs=109.4
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccc
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGID 296 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD 296 (451)
+..|...+......+.++||||+|++.++.+++.|.+.|+++..+||+++..+|..+++.|+.|++.|+|||+.+++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 44555555444447889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCC-----CCCHHHHHHHhcccCCCCCCcEEEEEeeccc
Q psy10478 297 KPDVRCVIHYGA-----PKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339 (451)
Q Consensus 297 ~p~v~~VI~~~~-----p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 339 (451)
+|++++||+++. |.+..+|+||+||+||. ..|.+++|++..+
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~ 558 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKIT 558 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCC
Confidence 999999999874 78999999999999996 6899999988543
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.82 E-value=5.8e-19 Score=164.50 Aligned_cols=272 Identities=18% Similarity=0.169 Sum_probs=180.1
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhh-hhcccceeccccCCCCcchhhcc
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVL-IAIDEAHCVSQWGHDFRPSYRCL 111 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~-~~~de~~~~~~~~~~~~~~~~~~ 111 (451)
+...++-|+.++|+|.=-+.-+...+ +.+.+|.++||-.-..-+ +..++++..- ..++..| ++- +.+-.
T Consensus 116 k~~~lv~AV~GaGKTEMif~~i~~al-~~G~~vciASPRvDVclE-l~~Rlk~aF~~~~I~~Ly------g~S-~~~fr- 185 (441)
T COG4098 116 KEDTLVWAVTGAGKTEMIFQGIEQAL-NQGGRVCIASPRVDVCLE-LYPRLKQAFSNCDIDLLY------GDS-DSYFR- 185 (441)
T ss_pred cCcEEEEEecCCCchhhhHHHHHHHH-hcCCeEEEecCcccchHH-HHHHHHHhhccCCeeeEe------cCC-chhcc-
Confidence 44556677888888865544444444 445799999997666554 5555544311 1122222 122 22222
Q ss_pred cccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCC
Q psy10478 112 SELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191 (451)
Q Consensus 112 ~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~ 191 (451)
..++++|...++.+.+. ++++||||+|.+.--.. +. ...+.-...-++...+.+|||++.....++...
T Consensus 186 ~plvVaTtHQLlrFk~a---FD~liIDEVDAFP~~~d---~~-L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g---- 254 (441)
T COG4098 186 APLVVATTHQLLRFKQA---FDLLIIDEVDAFPFSDD---QS-LQYAVKKARKKEGATIYLTATPTKKLERKILKG---- 254 (441)
T ss_pred ccEEEEehHHHHHHHhh---ccEEEEeccccccccCC---HH-HHHHHHHhhcccCceEEEecCChHHHHHHhhhC----
Confidence 77888888888888776 99999999998753211 11 222222223357889999999998776655432
Q ss_pred CCeEEec-------CCCCCceEEEEEecc----hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC-C-CCe
Q psy10478 192 DPNIINT-------GFDRPNLYLAASVKQ----DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN-G-IQN 258 (451)
Q Consensus 192 ~~~~~~~-------~~~~~~l~~~~~~~~----~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~-~-~~v 258 (451)
+-..+.. +...|...+.-.... ...-..|..+++.....+.+++||++++...++++..|++. + ..+
T Consensus 255 ~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i 334 (441)
T COG4098 255 NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETI 334 (441)
T ss_pred CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccce
Confidence 1111211 111222211111100 11223677788877778999999999999999999999554 3 456
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCC--CCHHHHHHHhcccCCCCC
Q psy10478 259 RPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP--KDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 259 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p--~s~~~y~Qr~GRagR~g~ 327 (451)
+.+|+. ...|.+..++|++|++.+|++|.+++||+.+|+|++.+.-.-. .+-+.++|.+||+||.-.
T Consensus 335 ~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 335 ASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLE 403 (441)
T ss_pred eeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCc
Confidence 788886 3578899999999999999999999999999999987753322 488999999999999754
No 93
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.82 E-value=4.4e-19 Score=185.08 Aligned_cols=168 Identities=17% Similarity=0.097 Sum_probs=139.4
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEE----ecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAAS----VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+.+||+|+..+ ...+.+..+ -.++..++++|....... .....+...+.+.+......+.++||||+|+..
T Consensus 342 kl~GmTGTa~te-~~E~~~iY~---l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~ 417 (745)
T TIGR00963 342 KLSGMTGTAKTE-EEEFEKIYN---LEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEK 417 (745)
T ss_pred hhhccCCCcHHH-HHHHHHHhC---CCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 467899998644 344444443 346777888886644321 122456777777665556689999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCC-------ccEEEEeCCCCCHHHHH
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD-------VRCVIHYGAPKDLSAYY 316 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~-------v~~VI~~~~p~s~~~y~ 316 (451)
++.+++.|.+.|+++..+||. +.+|+..+..|..+...|+|||+++|||+|++. .-+||+++.|.|...|.
T Consensus 418 se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~ 495 (745)
T TIGR00963 418 SELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDN 495 (745)
T ss_pred HHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHH
Confidence 999999999999999999998 789999999999999999999999999999998 45999999999999999
Q ss_pred HHhcccCCCCCCcEEEEEeecccHH
Q psy10478 317 QEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 317 Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
|+.||+||.|.+|.+..|++.+|.-
T Consensus 496 q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 496 QLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred HHhccccCCCCCcceEEEEeccHHH
Confidence 9999999999999999999887643
No 94
>KOG0922|consensus
Probab=99.81 E-value=7.4e-19 Score=177.09 Aligned_cols=235 Identities=18% Similarity=0.297 Sum_probs=168.5
Q ss_pred CccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccE
Q psy10478 55 PDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVL 134 (451)
Q Consensus 55 ~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~ 134 (451)
.+..-+.+++|.|+|.+.|+... +.+. .|+++++
T Consensus 133 Fed~ts~~TrikymTDG~LLRE~-----l~Dp-----------------------------------------~LskYsv 166 (674)
T KOG0922|consen 133 FEDSTSKDTRIKYMTDGMLLREI-----LKDP-----------------------------------------LLSKYSV 166 (674)
T ss_pred ecccCCCceeEEEecchHHHHHH-----hcCC-----------------------------------------ccccccE
Confidence 44455778999999999997633 2221 2367999
Q ss_pred EEEccccccccCCCCcHHHH--HHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCC-ceEEEEEe
Q psy10478 135 IAIDEAHCVSQWGHDFRPSY--RCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRP-NLYLAASV 211 (451)
Q Consensus 135 vViDEah~~~~~g~~fr~~~--~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~-~l~~~~~~ 211 (451)
|||||||.-+ ...++ ..|..+.+..++..++.||||+..+....+ ++ .-|.+...+..-| .+.|....
T Consensus 167 IIlDEAHERs-----l~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~y---F~-~a~i~~i~GR~fPVei~y~~~p 237 (674)
T KOG0922|consen 167 IILDEAHERS-----LHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEY---FN-NAPILTIPGRTFPVEILYLKEP 237 (674)
T ss_pred EEEechhhhh-----hHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHH---hc-CCceEeecCCCCceeEEeccCC
Confidence 9999999643 22222 234455556678899999999987654433 22 2233322222222 23333322
Q ss_pred cchhHHHHHHHHHhhc-cCCCCcEEEEcCChhHHHHHHHHHHHC----C----CCeeeecCCCCHHHHHHHHHHhhcCCc
Q psy10478 212 KQDDIMADLRKLTNFE-NQFEGSTIIYCPTKVICEKVCDVLSRN----G----IQNRPYHAHISLKQRKEIHGLFVKDLI 282 (451)
Q Consensus 212 ~~~~~~~~L~~~l~~~-~~~~~~~iVF~~t~~~~~~l~~~L~~~----~----~~v~~~h~~l~~~~R~~~~~~f~~g~~ 282 (451)
..+..-+.+...+..+ ..+.+-+|||....++.+.+++.|.+. + .-+..+||.|+.+++.++++.-..|.-
T Consensus 238 ~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~R 317 (674)
T KOG0922|consen 238 TADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKR 317 (674)
T ss_pred chhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcc
Confidence 2233333333333322 136778999999999999999999875 1 125689999999999999998888999
Q ss_pred eEEEEccccccccccCCccEEEEeCC------------------CCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHh
Q psy10478 283 KVVVATCAFGMGIDKPDVRCVIHYGA------------------PKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNN 344 (451)
Q Consensus 283 ~iLVaT~~~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~ 344 (451)
+|++||++++..+.+|+|++||+-|. |-|.++-.||+|||||.| +|.|+-+|+.+++.++.
T Consensus 318 KvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~~ 396 (674)
T KOG0922|consen 318 KVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKMP 396 (674)
T ss_pred eEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhcc
Confidence 99999999999999999999997664 338899999999999998 99999999999987654
Q ss_pred h
Q psy10478 345 M 345 (451)
Q Consensus 345 ~ 345 (451)
.
T Consensus 397 ~ 397 (674)
T KOG0922|consen 397 L 397 (674)
T ss_pred c
Confidence 3
No 95
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.81 E-value=4.1e-19 Score=188.59 Aligned_cols=304 Identities=18% Similarity=0.227 Sum_probs=197.9
Q ss_pred HHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhh-hhhhhcccceeccccCCC-
Q psy10478 26 YLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPR-IVLIAIDEAHCVSQWGHD- 103 (451)
Q Consensus 26 ~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~-~~~~~~de~~~~~~~~~~- 103 (451)
+.+....+...|+.+-++||+|..-=...++..-.+...|.++=|=++..-. ..+++.. ++ ...+...|-.
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArs-vA~RvAeel~------~~~G~~VGY~i 130 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARS-VAERVAEELG------EKLGETVGYSI 130 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHH-HHHHHHHHhC------CCcCceeeEEE
Confidence 3444445677888899999998764343444433445688888898875432 3332221 10 0111122211
Q ss_pred -CcchhhcccccccCCCCchhhhcc---ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCC-CCCEEEEEeeCCh
Q psy10478 104 -FRPSYRCLSELRLPLPDVPILFLS---RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP-DVPILAVTATATP 178 (451)
Q Consensus 104 -~~~~~~~~~~l~~~~~~~~~~~l~---~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~-~~~~v~lSAT~~~ 178 (451)
|.+.......+..-|.+.++..+. .|+.+++|||||||+-+-.. ||.-. .+..+....+ +..+|.||||+..
T Consensus 131 Rfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~t-DilLg--llk~~~~~rr~DLKiIimSATld~ 207 (845)
T COG1643 131 RFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNT-DILLG--LLKDLLARRRDDLKLIIMSATLDA 207 (845)
T ss_pred EeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHH-HHHHH--HHHHHHhhcCCCceEEEEecccCH
Confidence 222222233444455555544332 27889999999999765211 12111 1233233334 7999999999987
Q ss_pred HHHHHHHHhcCCCCCeEEecC-CCCCceEEEEEecchh-HHHHHHHHHhhc-cCCCCcEEEEcCChhHHHHHHHHHHH--
Q psy10478 179 VVIDDICTSLMLRDPNIINTG-FDRPNLYLAASVKQDD-IMADLRKLTNFE-NQFEGSTIIYCPTKVICEKVCDVLSR-- 253 (451)
Q Consensus 179 ~~~~~i~~~l~l~~~~~~~~~-~~~~~l~~~~~~~~~~-~~~~L~~~l~~~-~~~~~~~iVF~~t~~~~~~l~~~L~~-- 253 (451)
+. +.+.++. -|.+...+ ...-.++|......+. ....+...+... ....+.+|||.+...+.+.+++.|.+
T Consensus 208 ~r---fs~~f~~-apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~ 283 (845)
T COG1643 208 ER---FSAYFGN-APVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAE 283 (845)
T ss_pred HH---HHHHcCC-CCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcc
Confidence 64 3444432 33332222 2222344433222333 444555544433 23678999999999999999999998
Q ss_pred --CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC------------------CHH
Q psy10478 254 --NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK------------------DLS 313 (451)
Q Consensus 254 --~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------------s~~ 313 (451)
....+..+||.|+.+++.++++--..|+-+|++||++++.++.+|+|++||+-|.-+ |.+
T Consensus 284 l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqA 363 (845)
T COG1643 284 LGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKA 363 (845)
T ss_pred ccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechh
Confidence 347789999999999999998888788777999999999999999999999877543 788
Q ss_pred HHHHHhcccCCCCCCcEEEEEeecccHHHHh
Q psy10478 314 AYYQEIGRAGRDGLSSVCYTFYKTADFTKNN 344 (451)
Q Consensus 314 ~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~ 344 (451)
+.-||.|||||.+ +|.|+-+|+.++...+.
T Consensus 364 sA~QRaGRAGR~~-pGicyRLyse~~~~~~~ 393 (845)
T COG1643 364 SADQRAGRAGRTG-PGICYRLYSEEDFLAFP 393 (845)
T ss_pred hhhhhccccccCC-CceEEEecCHHHHHhcc
Confidence 9999999999997 99999999997776443
No 96
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=9e-19 Score=184.24 Aligned_cols=167 Identities=19% Similarity=0.176 Sum_probs=138.9
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEE----ecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAAS----VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
++.+||+|+..+ ...+.+..+ -.++..++++|....... .....+...+.+.+......+.|+||||+|+..
T Consensus 377 kl~GmTGTa~~e-~~Ef~~iY~---l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 377 KLSGMTGTAKTE-EEEFREIYN---MEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred hhhccCCCCHHH-HHHHHHHhC---CCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 467899998643 344444443 346778888887653322 223567778888886666689999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccccc---CCcc-----EEEEeCCCCCHHHH
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDK---PDVR-----CVIHYGAPKDLSAY 315 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~---p~v~-----~VI~~~~p~s~~~y 315 (451)
++.++..|.+.|+++..+||++...++..+..+++.|. |+|||+++|||+|+ ++|. +||+++.|.|...|
T Consensus 453 se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~ 530 (796)
T PRK12906 453 SERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRID 530 (796)
T ss_pred HHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHH
Confidence 99999999999999999999999888888888877776 99999999999999 4899 99999999999999
Q ss_pred HHHhcccCCCCCCcEEEEEeecccH
Q psy10478 316 YQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 316 ~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
.|+.||+||.|.+|.+..|++.+|-
T Consensus 531 ~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 531 NQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHHhhhhccCCCCcceEEEEeccch
Confidence 9999999999999999999988753
No 97
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=7.8e-19 Score=148.67 Aligned_cols=120 Identities=33% Similarity=0.524 Sum_probs=111.2
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccc
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMG 294 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~G 294 (451)
.+...+..++......++++||||++...++.+++.|.+.+..+..+||+++..+|..+.+.|.++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 56777777777665468899999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEE
Q psy10478 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334 (451)
Q Consensus 295 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l 334 (451)
+|+|++++||+++.|.+...|.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887653
No 98
>KOG0951|consensus
Probab=99.80 E-value=5e-19 Score=186.95 Aligned_cols=310 Identities=15% Similarity=0.172 Sum_probs=207.8
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCC----------eeEEEeCccccccch---hhHhhhhhhhhhhcccceecccc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNC----------RQVVYMTPEYVTNNT---SFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~----------~~vl~~tPe~l~~~~---~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
.+-...|-+++|+|.-....+++++..+. ++|+|..|-+.+... .|.+++..+++.+.. .
T Consensus 326 EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~E-------l 398 (1674)
T KOG0951|consen 326 ENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLE-------L 398 (1674)
T ss_pred CcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEE-------e
Confidence 34445666888888877777777666443 499999999998765 244555555443332 1
Q ss_pred CCCCcchhhcc--cccccCCCCchhhhccc------cCcccEEEEcccccccc-CCCCcHHHHHHH-HHhhccCCCCCEE
Q psy10478 101 GHDFRPSYRCL--SELRLPLPDVPILFLSR------IPRIVLIAIDEAHCVSQ-WGHDFRPSYRCL-SELRLPLPDVPIL 170 (451)
Q Consensus 101 ~~~~~~~~~~~--~~l~~~~~~~~~~~l~~------l~~l~~vViDEah~~~~-~g~~fr~~~~~l-~~l~~~~~~~~~v 170 (451)
+.+-...+..+ ....+.||+.+-..-+. .+-++++||||.|.+-+ .|........+. ........++.++
T Consensus 399 TgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlV 478 (1674)
T KOG0951|consen 399 TGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLV 478 (1674)
T ss_pred cccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceee
Confidence 22222222222 45667788877332221 23588999999998843 342211111121 1111223478899
Q ss_pred EEEeeCChHHHHHHHHhcCCCCCeEEe-cCCCCC-ceEEEEEe---cc-hhHHHHHHH----HHhhccCCCCcEEEEcCC
Q psy10478 171 AVTATATPVVIDDICTSLMLRDPNIIN-TGFDRP-NLYLAASV---KQ-DDIMADLRK----LTNFENQFEGSTIIYCPT 240 (451)
Q Consensus 171 ~lSAT~~~~~~~~i~~~l~l~~~~~~~-~~~~~~-~l~~~~~~---~~-~~~~~~L~~----~l~~~~~~~~~~iVF~~t 240 (451)
++|||+|+-. |+...+....+.++. .+..|| ++.+.+.. +. ...++.+.+ -+-.+. ...++|||+.+
T Consensus 479 GLSATLPNy~--DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~a-gk~qVLVFVHs 555 (1674)
T KOG0951|consen 479 GLSATLPNYE--DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHA-GKNQVLVFVHS 555 (1674)
T ss_pred eecccCCchh--hhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhC-CCCcEEEEEEe
Confidence 9999999855 778877766654443 334444 34333322 22 112222222 122222 44899999999
Q ss_pred hhHHHHHHHHHHH-------------------------------------CCCCeeeecCCCCHHHHHHHHHHhhcCCce
Q psy10478 241 KVICEKVCDVLSR-------------------------------------NGIQNRPYHAHISLKQRKEIHGLFVKDLIK 283 (451)
Q Consensus 241 ~~~~~~l~~~L~~-------------------------------------~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~ 283 (451)
++++-+.|++++. ..++++.+|+||+..+|..+++.|.+|.++
T Consensus 556 RkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iq 635 (1674)
T KOG0951|consen 556 RKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQ 635 (1674)
T ss_pred chHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCcee
Confidence 9999999988872 145688999999999999999999999999
Q ss_pred EEEEccccccccccCCccEEE----EeCCC------CCHHHHHHHhcccCCCC--CCcEEEEEeecccHHHHhhhhcCCC
Q psy10478 284 VVVATCAFGMGIDKPDVRCVI----HYGAP------KDLSAYYQEIGRAGRDG--LSSVCYTFYKTADFTKNNMIFQPNL 351 (451)
Q Consensus 284 iLVaT~~~~~GiD~p~v~~VI----~~~~p------~s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~~~~~~~~~~~~ 351 (451)
|+|+|..+++|+|+|.-.++| .|++- .++.+..||.|||||.+ ..|..++....+++.....++++.+
T Consensus 636 vlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qL 715 (1674)
T KOG0951|consen 636 VLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQL 715 (1674)
T ss_pred EEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcC
Confidence 999999999999999877766 24543 38899999999999976 4588899888888888888888776
Q ss_pred CC
Q psy10478 352 ND 353 (451)
Q Consensus 352 ~~ 353 (451)
+.
T Consensus 716 pi 717 (1674)
T KOG0951|consen 716 PI 717 (1674)
T ss_pred CC
Confidence 65
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.79 E-value=1e-18 Score=186.85 Aligned_cols=300 Identities=20% Similarity=0.234 Sum_probs=189.8
Q ss_pred HHHHHHhhhhhcccchhhhhhcCCCC-hhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 22 RVEKYLELRTCRRKYLLNHFKGSSVT-MAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 22 q~~~~~~~~~~~~~~i~a~~~~s~~~-~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
|.++...+.. +.+.+++|-+++|+| .+|+...+.. ..+.+++|+||-++++++.+++++..++-+ +...+..
T Consensus 124 Q~~a~~~Ler-~esVlV~ApTssGKTvVaeyAi~~al--~~~qrviYTsPIKALsNQKyrdl~~~fgdv----~~~vGL~ 196 (1041)
T COG4581 124 QQEAIAILER-GESVLVCAPTSSGKTVVAEYAIALAL--RDGQRVIYTSPIKALSNQKYRDLLAKFGDV----ADMVGLM 196 (1041)
T ss_pred HHHHHHHHhC-CCcEEEEccCCCCcchHHHHHHHHHH--HcCCceEeccchhhhhhhHHHHHHHHhhhh----hhhccce
Confidence 4455555544 444455667777777 5666544432 334579999999999999788877766211 1211222
Q ss_pred CCC--CcchhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 101 GHD--FRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 101 ~~~--~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
+.| .++...++......+.+..+.....+..+..||+||+|.+.+.... ..+..+ ++..+..+++++||||.++
T Consensus 197 TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG--~VWEE~--Ii~lP~~v~~v~LSATv~N 272 (1041)
T COG4581 197 TGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERG--VVWEEV--IILLPDHVRFVFLSATVPN 272 (1041)
T ss_pred ecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccc--hhHHHH--HHhcCCCCcEEEEeCCCCC
Confidence 222 5555666655555555555555555678999999999999864321 233333 2233457899999999987
Q ss_pred HHHHHHHHhcCC--CCCeEEecCCCCC-ceEEEEEec----------ch---h----HHHHHH-----------------
Q psy10478 179 VVIDDICTSLML--RDPNIINTGFDRP-NLYLAASVK----------QD---D----IMADLR----------------- 221 (451)
Q Consensus 179 ~~~~~i~~~l~l--~~~~~~~~~~~~~-~l~~~~~~~----------~~---~----~~~~L~----------------- 221 (451)
.. .+..|++. ..+..+.....|| ++...+... .. . ....+.
T Consensus 273 ~~--EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 350 (1041)
T COG4581 273 AE--EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRY 350 (1041)
T ss_pred HH--HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccc
Confidence 65 34555542 2333333322332 222211111 00 0 000011
Q ss_pred ---------------------HHHhhccCCCCcEEEEcCChhHHHHHHHHHHH---------------------------
Q psy10478 222 ---------------------KLTNFENQFEGSTIIYCPTKVICEKVCDVLSR--------------------------- 253 (451)
Q Consensus 222 ---------------------~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~--------------------------- 253 (451)
..+.. ...-++|+|+-|+..|+..+..+..
T Consensus 351 a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~e 428 (1041)
T COG4581 351 ARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEE 428 (1041)
T ss_pred cccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChh
Confidence 11111 1445899999999999988777761
Q ss_pred -CCC-------------CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCC---------CC
Q psy10478 254 -NGI-------------QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA---------PK 310 (451)
Q Consensus 254 -~~~-------------~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~---------p~ 310 (451)
.++ .+..+|+||-+..|..+...|..|.++|++||.++++|+|.|.= .|+.... .-
T Consensus 429 d~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar-tvv~~~l~K~dG~~~r~L 507 (1041)
T COG4581 429 DRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR-TVVFTSLSKFDGNGHRWL 507 (1041)
T ss_pred hhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc-ceeeeeeEEecCCceeec
Confidence 111 24579999999999999999999999999999999999999954 4444332 23
Q ss_pred CHHHHHHHhcccCCCCCC--cEEEEEeec
Q psy10478 311 DLSAYYQEIGRAGRDGLS--SVCYTFYKT 337 (451)
Q Consensus 311 s~~~y~Qr~GRagR~g~~--g~~i~l~~~ 337 (451)
+..+|.|+.|||||.|.. |.+++...+
T Consensus 508 ~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 508 SPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ChhHHHHhhhhhccccccccceEEEecCC
Confidence 889999999999999964 777766443
No 100
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=5e-18 Score=179.81 Aligned_cols=168 Identities=15% Similarity=0.099 Sum_probs=138.5
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEE----EecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAA----SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+-+||+|+..+.. ++.+.. +-.++..+.++|...... ......+...+.+.+......+.++||||+|+..
T Consensus 535 kLaGMTGTA~te~~-Ef~~iY---~L~Vv~IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~ 610 (1025)
T PRK12900 535 KLAGMTGTAETEAS-EFFEIY---KLDVVVIPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEV 610 (1025)
T ss_pred hhcccCCCChhHHH-HHHHHh---CCcEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHH
Confidence 35689999865443 344433 445777888888764332 1222567888888887666689999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccC---CccE-----EEEeCCCCCHHHH
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP---DVRC-----VIHYGAPKDLSAY 315 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p---~v~~-----VI~~~~p~s~~~y 315 (451)
++.+++.|.+.|+++..+|+ .+.+|+..+..|..+...|+|||+++|||+|++ .|.. ||++..|.|...|
T Consensus 611 sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid 688 (1025)
T PRK12900 611 SETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRID 688 (1025)
T ss_pred HHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHH
Confidence 99999999999999999997 588999999999999999999999999999999 5643 4889999999999
Q ss_pred HHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 316 YQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 316 ~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
.|+.||+||.|.+|.++.|++.+|.-
T Consensus 689 ~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 689 RQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred HHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999999999999999999987654
No 101
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.76 E-value=2.6e-18 Score=132.18 Aligned_cols=78 Identities=42% Similarity=0.627 Sum_probs=75.7
Q ss_pred HHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCC
Q psy10478 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326 (451)
Q Consensus 249 ~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 326 (451)
++|++.++.+..+||+++..+|..+++.|.+++..|||||+++++|+|+|++++||++++|.+...|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999987
No 102
>KOG0950|consensus
Probab=99.75 E-value=9.8e-18 Score=174.42 Aligned_cols=214 Identities=22% Similarity=0.314 Sum_probs=145.7
Q ss_pred cCcccEEEEccccccccCCCCcHHHHHHHHHhh--ccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCC---
Q psy10478 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR--LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRP--- 203 (451)
Q Consensus 129 l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~--~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~--- 203 (451)
+..+++|||||-|.+.+-|.+.--.. .+.++. ..-...++|+||||+++.. .+..++. ..+.. ...||
T Consensus 339 ~~~~g~vvVdElhmi~d~~rg~~lE~-~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~---A~~y~-t~fRPv~L 411 (1008)
T KOG0950|consen 339 LDFLGMVVVDELHMIGDKGRGAILEL-LLAKILYENLETSVQIIGMSATIPNNS--LLQDWLD---AFVYT-TRFRPVPL 411 (1008)
T ss_pred ccccCcEEEeeeeeeeccccchHHHH-HHHHHHHhccccceeEeeeecccCChH--HHHHHhh---hhhee-cccCcccc
Confidence 35699999999999998765422211 122221 1122467999999998744 3444443 11111 11111
Q ss_pred -------ceEEEEEecchhHHH----------------HHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHH-------
Q psy10478 204 -------NLYLAASVKQDDIMA----------------DLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR------- 253 (451)
Q Consensus 204 -------~l~~~~~~~~~~~~~----------------~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~------- 253 (451)
...|... ...... .+..+.......+.++||||++++.|+.++..+..
T Consensus 412 ~E~ik~G~~i~~~~--r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~ 489 (1008)
T KOG0950|consen 412 KEYIKPGSLIYESS--RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIK 489 (1008)
T ss_pred hhccCCCcccccch--hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhh
Confidence 1111111 111111 22222223333566799999999999998866542
Q ss_pred -------------------------------CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccE
Q psy10478 254 -------------------------------NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC 302 (451)
Q Consensus 254 -------------------------------~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~ 302 (451)
..+.++++|+|++.++|+.+...|++|-+.|++||++++.|+|.|..++
T Consensus 490 ~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRV 569 (1008)
T KOG0950|consen 490 SEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRV 569 (1008)
T ss_pred hhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCccee
Confidence 1346889999999999999999999999999999999999999998888
Q ss_pred EEEe---C-CCCCHHHHHHHhcccCCCCC--CcEEEEEeecccHHHHhhhhcCCC
Q psy10478 303 VIHY---G-APKDLSAYYQEIGRAGRDGL--SSVCYTFYKTADFTKNNMIFQPNL 351 (451)
Q Consensus 303 VI~~---~-~p~s~~~y~Qr~GRagR~g~--~g~~i~l~~~~d~~~~~~~~~~~~ 351 (451)
+|-. + .+.+..+|.||+|||||.|- .|.+++++.+.+......++....
T Consensus 570 IiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~ 624 (1008)
T KOG0950|consen 570 IIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPL 624 (1008)
T ss_pred EEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccc
Confidence 8742 2 33488899999999999984 588999999999887777766653
No 103
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.2e-16 Score=156.90 Aligned_cols=212 Identities=23% Similarity=0.260 Sum_probs=149.7
Q ss_pred CCchhhhccccCcccEEEEccccccc-cCCCCcHHHHHH---HHHhhccCC----------------CCCEEEEEeeCCh
Q psy10478 119 PDVPILFLSRIPRIVLIAIDEAHCVS-QWGHDFRPSYRC---LSELRLPLP----------------DVPILAVTATATP 178 (451)
Q Consensus 119 ~~~~~~~l~~l~~l~~vViDEah~~~-~~g~~fr~~~~~---l~~l~~~~~----------------~~~~v~lSAT~~~ 178 (451)
...|...++.|..=-++||||.|... +.+.-|..+..+ |...--.+| ..|++.+|||+.+
T Consensus 319 Ge~P~tL~DYfp~d~Ll~IDESHvTvPQi~gMynGDrsRK~~LVeyGFRLPSAlDNRPL~feEf~~~~~q~i~VSATPg~ 398 (663)
T COG0556 319 GEPPYTLFDYFPDDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEYGFRLPSALDNRPLKFEEFEAKIPQTIYVSATPGD 398 (663)
T ss_pred CcCCCcHHHhCCcceEEEEeccccchHhhhchhcccHHHHHHHHHhcCcCcccccCCCCCHHHHHHhcCCEEEEECCCCh
Confidence 34455566666667799999999643 433323333222 211111111 2578999999987
Q ss_pred HHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCe
Q psy10478 179 VVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQN 258 (451)
Q Consensus 179 ~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v 258 (451)
...+.-.. .+-+..+--.+.-.|.+.... .. ..+++|..-+......+.+++|-+-|++.||.|.++|.+.|+++
T Consensus 399 ~E~e~s~~--~vveQiIRPTGLlDP~ievRp--~~-~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv 473 (663)
T COG0556 399 YELEQSGG--NVVEQIIRPTGLLDPEIEVRP--TK-GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKV 473 (663)
T ss_pred HHHHhccC--ceeEEeecCCCCCCCceeeec--CC-CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceE
Confidence 65431100 000111111223334333322 22 23455555555544578999999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC-----CHHHHHHHhcccCCCCCCcEEEE
Q psy10478 259 RPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK-----DLSAYYQEIGRAGRDGLSSVCYT 333 (451)
Q Consensus 259 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-----s~~~y~Qr~GRagR~g~~g~~i~ 333 (451)
..+|++...-+|.+++.+++.|.++|||+-+.+-+|+|+|.|.+|..+|..+ |-.+++|-+|||+|.- .|.+++
T Consensus 474 ~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~GkvIl 552 (663)
T COG0556 474 RYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVIL 552 (663)
T ss_pred EeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc-CCeEEE
Confidence 9999999999999999999999999999999999999999999999888654 8899999999999985 688888
Q ss_pred Eee
Q psy10478 334 FYK 336 (451)
Q Consensus 334 l~~ 336 (451)
+.+
T Consensus 553 YAD 555 (663)
T COG0556 553 YAD 555 (663)
T ss_pred Ech
Confidence 754
No 104
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.72 E-value=1e-16 Score=177.41 Aligned_cols=94 Identities=22% Similarity=0.337 Sum_probs=83.3
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC------CC---CeeeecCCCCHHHHHHHHHHhhcCCc-eEEEEccccccccccCCc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN------GI---QNRPYHAHISLKQRKEIHGLFVKDLI-KVVVATCAFGMGIDKPDV 300 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~------~~---~v~~~h~~l~~~~R~~~~~~f~~g~~-~iLVaT~~~~~GiD~p~v 300 (451)
++++||||.++.+|+.+++.|.+. ++ .+..+||+.+ ++.++++.|+++.. +|+|+++++++|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 479999999999999999988763 22 4567899875 56789999999987 599999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhcccCCCC
Q psy10478 301 RCVIHYGAPKDLSAYYQEIGRAGRDG 326 (451)
Q Consensus 301 ~~VI~~~~p~s~~~y~Qr~GRagR~g 326 (451)
.+||.+.+++|...|+|++||+.|..
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999964
No 105
>KOG0923|consensus
Probab=99.72 E-value=1.3e-16 Score=159.68 Aligned_cols=227 Identities=20% Similarity=0.286 Sum_probs=164.5
Q ss_pred CccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccE
Q psy10478 55 PDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVL 134 (451)
Q Consensus 55 ~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~ 134 (451)
.+.+-+.++.+=|+|.++|+. +++... .|+.+++
T Consensus 348 FEdcTSekTvlKYMTDGmLlR-----EfL~ep-----------------------------------------dLasYSV 381 (902)
T KOG0923|consen 348 FEDCTSEKTVLKYMTDGMLLR-----EFLSEP-----------------------------------------DLASYSV 381 (902)
T ss_pred eccccCcceeeeeecchhHHH-----HHhccc-----------------------------------------cccceeE
Confidence 444556777888999999865 444332 2357999
Q ss_pred EEEccccccccCCCCcHHH--HHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCc--eEEEEE
Q psy10478 135 IAIDEAHCVSQWGHDFRPS--YRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPN--LYLAAS 210 (451)
Q Consensus 135 vViDEah~~~~~g~~fr~~--~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~--l~~~~~ 210 (451)
|||||||.-- ...+ +..+..+....|+..++..|||+..+-. ...+ .+..++..+..|-+ ++|...
T Consensus 382 iiiDEAHERT-----L~TDILfgLvKDIar~RpdLKllIsSAT~DAekF---S~fF--DdapIF~iPGRRyPVdi~Yt~~ 451 (902)
T KOG0923|consen 382 IIVDEAHERT-----LHTDILFGLVKDIARFRPDLKLLISSATMDAEKF---SAFF--DDAPIFRIPGRRYPVDIFYTKA 451 (902)
T ss_pred EEeehhhhhh-----hhhhHHHHHHHHHHhhCCcceEEeeccccCHHHH---HHhc--cCCcEEeccCcccceeeecccC
Confidence 9999999632 2222 2234444455589999999999987643 3333 45556666555533 344433
Q ss_pred ecchhHHHHHHHHHhhc-cCCCCcEEEEcCChhHHHHHHHHHHHC----C-----CCeeeecCCCCHHHHHHHHHHhhcC
Q psy10478 211 VKQDDIMADLRKLTNFE-NQFEGSTIIYCPTKVICEKVCDVLSRN----G-----IQNRPYHAHISLKQRKEIHGLFVKD 280 (451)
Q Consensus 211 ~~~~~~~~~L~~~l~~~-~~~~~~~iVF~~t~~~~~~l~~~L~~~----~-----~~v~~~h~~l~~~~R~~~~~~f~~g 280 (451)
+..+..-..+..++..+ .++.+-+|||....++.+...+.|... | +-+..+|++++.+.+.+|++---.|
T Consensus 452 PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g 531 (902)
T KOG0923|consen 452 PEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG 531 (902)
T ss_pred CchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC
Confidence 33344444444444433 247789999999988887777766643 2 4478899999999999999999999
Q ss_pred CceEEEEccccccccccCCccEEEEeCC------------------CCCHHHHHHHhcccCCCCCCcEEEEEeecc
Q psy10478 281 LIKVVVATCAFGMGIDKPDVRCVIHYGA------------------PKDLSAYYQEIGRAGRDGLSSVCYTFYKTA 338 (451)
Q Consensus 281 ~~~iLVaT~~~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 338 (451)
--+|++||++++..+.+++|.+||+-|+ |-|.++-.||+|||||.| +|.|+-+|+..
T Consensus 532 aRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 532 ARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred ceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 9999999999999999999999997664 337889999999999998 99999999843
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.70 E-value=2.4e-16 Score=169.67 Aligned_cols=297 Identities=19% Similarity=0.168 Sum_probs=182.7
Q ss_pred cchhhhhhcCCCChhhhcCcCccccC---CCeeEEEeCccccccchhhHhhhhhhhhhhcccc--eec--cccCCCCcc-
Q psy10478 35 KYLLNHFKGSSVTMAESQVPPDKCCD---NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEA--HCV--SQWGHDFRP- 106 (451)
Q Consensus 35 ~~i~a~~~~s~~~~~e~~~~~~~~~~---~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~--~~~--~~~~~~~~~- 106 (451)
..+.-+-+|+|+|.+-.........+ ...+++|+.|-+...+..............+... |.. ..|......
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 295 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQD 295 (733)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccc
Confidence 45667889999998876666655555 4789999999998876634343333333333333 222 111111110
Q ss_pred ------hhhcc----cccccCCCCchhhhcccc--------CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCC
Q psy10478 107 ------SYRCL----SELRLPLPDVPILFLSRI--------PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP 168 (451)
Q Consensus 107 ------~~~~~----~~l~~~~~~~~~~~l~~l--------~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~ 168 (451)
..... -.....+|.....+.... -..+++|+||+|.+.+.. .-.....+..+.. .-+.+
T Consensus 296 ~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~--~~~~l~~~i~~l~-~~g~~ 372 (733)
T COG1203 296 ILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET--MLAALLALLEALA-EAGVP 372 (733)
T ss_pred cceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc--hHHHHHHHHHHHH-hCCCC
Confidence 00000 001111111111100000 124689999999987653 2222222222111 23899
Q ss_pred EEEEEeeCChHHHHHHHHhcCCCCCeEEecC----CCCCceEEEEEecchhH-HHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 169 ILAVTATATPVVIDDICTSLMLRDPNIINTG----FDRPNLYLAASVKQDDI-MADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 169 ~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~----~~~~~l~~~~~~~~~~~-~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
+++||||+|+...+.+...++-........+ .+.+.+.-......... ...+...+......+++++|.|||+..
T Consensus 373 ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~ 452 (733)
T COG1203 373 VLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDR 452 (733)
T ss_pred EEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHH
Confidence 9999999999998888777654333322222 12222211110000010 012344444445588999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhh----cCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHh
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFV----KDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEI 319 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~----~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~ 319 (451)
|.++++.|+..+..+..+||.+...+|.+.++.+. .+...|+|||++.+.|+|+. .+++|- -+..+.+.+||+
T Consensus 453 Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~ 529 (733)
T COG1203 453 AIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRA 529 (733)
T ss_pred HHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHH
Confidence 99999999998878999999999999998888644 56788999999999999984 666553 345588999999
Q ss_pred cccCCCC--CCcEEEEEeec
Q psy10478 320 GRAGRDG--LSSVCYTFYKT 337 (451)
Q Consensus 320 GRagR~g--~~g~~i~l~~~ 337 (451)
||++|.| ..|..+++...
T Consensus 530 GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 530 GRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred HHHhhcccccCCceeEeecc
Confidence 9999999 56766666543
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.69 E-value=2.8e-16 Score=171.12 Aligned_cols=115 Identities=22% Similarity=0.211 Sum_probs=100.6
Q ss_pred HHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC---CceEEEEccccccccc
Q psy10478 220 LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD---LIKVVVATCAFGMGID 296 (451)
Q Consensus 220 L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g---~~~iLVaT~~~~~GiD 296 (451)
|..++......+.++|||+......+.+..+|...|+....+||+++..+|..+++.|.+. ..-+|++|.+.|.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 3344444444678999999999999999999999999999999999999999999999753 3457899999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEE
Q psy10478 297 KPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334 (451)
Q Consensus 297 ~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l 334 (451)
+...++||+||+|+++....|++||+-|-|+...+.++
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 99999999999999999999999999999987655443
No 108
>KOG0926|consensus
Probab=99.68 E-value=1.4e-16 Score=162.34 Aligned_cols=241 Identities=19% Similarity=0.259 Sum_probs=165.6
Q ss_pred cCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCc
Q psy10478 52 QVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPR 131 (451)
Q Consensus 52 ~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~ 131 (451)
....+.-....++|.|+|.+.|+... -.++ .|.+
T Consensus 339 qIRfd~ti~e~T~IkFMTDGVLLrEi-----~~Df-----------------------------------------lL~k 372 (1172)
T KOG0926|consen 339 QIRFDGTIGEDTSIKFMTDGVLLREI-----ENDF-----------------------------------------LLTK 372 (1172)
T ss_pred EEEeccccCCCceeEEecchHHHHHH-----HHhH-----------------------------------------hhhh
Confidence 44455555677899999999997632 2222 1246
Q ss_pred ccEEEEccccccccCCCCcHHHHHHHHHhhccCC-------CCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCc
Q psy10478 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP-------DVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPN 204 (451)
Q Consensus 132 l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~-------~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~ 204 (451)
++.|||||||.-+-...-.-..+.++..++..+. ...+|.||||+.-.....-...+.+.+| ++.+....-+
T Consensus 373 YSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfP 451 (1172)
T KOG0926|consen 373 YSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFP 451 (1172)
T ss_pred ceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCc
Confidence 9999999999865432222233345555554432 3568999999865443222233334444 6666555544
Q ss_pred eEEEEEecc--hhHHHHHHHHHhhcc-CCCCcEEEEcCChhHHHHHHHHHHHC---------------------------
Q psy10478 205 LYLAASVKQ--DDIMADLRKLTNFEN-QFEGSTIIYCPTKVICEKVCDVLSRN--------------------------- 254 (451)
Q Consensus 205 l~~~~~~~~--~~~~~~L~~~l~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~--------------------------- 254 (451)
..+.+...+ +...++..+..+.+. -+.+.+|||+....+++++++.|++.
T Consensus 452 VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~ 531 (1172)
T KOG0926|consen 452 VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDI 531 (1172)
T ss_pred eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhh
Confidence 555444433 333344444333321 17789999999999999999999831
Q ss_pred ------------------------------------------------------------------------CCCeeeec
Q psy10478 255 ------------------------------------------------------------------------GIQNRPYH 262 (451)
Q Consensus 255 ------------------------------------------------------------------------~~~v~~~h 262 (451)
..-|..++
T Consensus 532 ~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLY 611 (1172)
T KOG0926|consen 532 GDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLY 611 (1172)
T ss_pred ccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehh
Confidence 11255677
Q ss_pred CCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC------------------CHHHHHHHhcccCC
Q psy10478 263 AHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK------------------DLSAYYQEIGRAGR 324 (451)
Q Consensus 263 ~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Qr~GRagR 324 (451)
+-++.+.+.++++.--.|.--|+|||++++..+.+|+|++||+.|.-+ |.++--||+|||||
T Consensus 612 SLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGR 691 (1172)
T KOG0926|consen 612 SLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGR 691 (1172)
T ss_pred hhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCC
Confidence 778888888888888889888999999999999999999999877654 55666899999999
Q ss_pred CCCCcEEEEEeecccH
Q psy10478 325 DGLSSVCYTFYKTADF 340 (451)
Q Consensus 325 ~g~~g~~i~l~~~~d~ 340 (451)
.| +|+|+-+|++.-+
T Consensus 692 tg-pGHcYRLYSSAVf 706 (1172)
T KOG0926|consen 692 TG-PGHCYRLYSSAVF 706 (1172)
T ss_pred CC-CCceeehhhhHHh
Confidence 98 9999999987533
No 109
>KOG0924|consensus
Probab=99.68 E-value=3.9e-16 Score=156.60 Aligned_cols=201 Identities=21% Similarity=0.299 Sum_probs=141.1
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCC-ceEEE
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRP-NLYLA 208 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~-~l~~~ 208 (451)
.+++.||+||||.-+-.. --.+..+........+..+|.+|||+... .+...+| .-|.+...+-.-| .+.|.
T Consensus 467 ~kYSviImDEAHERslNt---DilfGllk~~larRrdlKliVtSATm~a~---kf~nfFg-n~p~f~IpGRTyPV~~~~~ 539 (1042)
T KOG0924|consen 467 DKYSVIIMDEAHERSLNT---DILFGLLKKVLARRRDLKLIVTSATMDAQ---KFSNFFG-NCPQFTIPGRTYPVEIMYT 539 (1042)
T ss_pred hheeEEEechhhhcccch---HHHHHHHHHHHHhhccceEEEeeccccHH---HHHHHhC-CCceeeecCCccceEEEec
Confidence 479999999999765321 11222333344445689999999999764 4455565 2233222221112 22333
Q ss_pred EEecchhHHHHHHHHHhhcc-CCCCcEEEEcCChhHHHHHHHHHHH----C------CCCeeeecCCCCHHHHHHHHHHh
Q psy10478 209 ASVKQDDIMADLRKLTNFEN-QFEGSTIIYCPTKVICEKVCDVLSR----N------GIQNRPYHAHISLKQRKEIHGLF 277 (451)
Q Consensus 209 ~~~~~~~~~~~L~~~l~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~----~------~~~v~~~h~~l~~~~R~~~~~~f 277 (451)
-.+..+..-..+.+.+..+. ...+.+|||....+..+-.+..+.. . ++.+..+++.|+.+.+.+++..-
T Consensus 540 k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a 619 (1042)
T KOG0924|consen 540 KTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKA 619 (1042)
T ss_pred cCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccC
Confidence 22223344444555544443 2457899999988776665555443 2 57799999999999999999988
Q ss_pred hcCCceEEEEccccccccccCCccEEEEeCC------------------CCCHHHHHHHhcccCCCCCCcEEEEEeecc
Q psy10478 278 VKDLIKVVVATCAFGMGIDKPDVRCVIHYGA------------------PKDLSAYYQEIGRAGRDGLSSVCYTFYKTA 338 (451)
Q Consensus 278 ~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 338 (451)
..|.-+|+|||++++..+.+|++.+||..|. |-|.+.-.||+|||||.| +|.|+-+|+..
T Consensus 620 ~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 620 EGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred CCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 8899999999999999999999999998764 447788899999999998 99999999864
No 110
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=6.4e-15 Score=156.04 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=137.2
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEE----EEecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLA----ASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+.+||+|+..+ ...+.+.. +-.++..++++|..... +......+...+...+......+.|+||||+|+..
T Consensus 367 kl~GmTGTa~te-~~E~~~iY---~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~ 442 (830)
T PRK12904 367 KLAGMTGTADTE-AEEFREIY---NLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEK 442 (830)
T ss_pred hhcccCCCcHHH-HHHHHHHh---CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 467899999644 34444444 34577788888876543 22223567888888887755588999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCc-----------------------
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDV----------------------- 300 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v----------------------- 300 (451)
++.+++.|.+.|+++..+||. +.+|+..+..|..+...|+|||+++|||+|++==
T Consensus 443 se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~ 520 (830)
T PRK12904 443 SELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIK 520 (830)
T ss_pred HHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHH
Confidence 999999999999999999995 7899999999999999999999999999999632
Q ss_pred ---------------cEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 301 ---------------RCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 301 ---------------~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
=+||....|.|..---|-.|||||-|.||.+..|++-+|-
T Consensus 521 ~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 521 AEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 1688888999999999999999999999999999887654
No 111
>KOG0920|consensus
Probab=99.63 E-value=2.8e-15 Score=159.08 Aligned_cols=206 Identities=24% Similarity=0.296 Sum_probs=146.5
Q ss_pred cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCc----
Q psy10478 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPN---- 204 (451)
Q Consensus 129 l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~---- 204 (451)
+.++.+||+||+|.-+... ||--.+ +..+....|+.++++||||+..+... ..++ .-|.+...+..-|.
T Consensus 285 l~~vthiivDEVHER~i~~-DflLi~--lk~lL~~~p~LkvILMSAT~dae~fs---~YF~-~~pvi~i~grtfpV~~~f 357 (924)
T KOG0920|consen 285 LSGVTHIIVDEVHERSINT-DFLLIL--LKDLLPRNPDLKVILMSATLDAELFS---DYFG-GCPVITIPGRTFPVKEYF 357 (924)
T ss_pred cccCceeeeeeEEEccCCc-ccHHHH--HHHHhhhCCCceEEEeeeecchHHHH---HHhC-CCceEeecCCCcchHHHH
Confidence 3579999999999876543 344333 23345556899999999999855433 3333 22222111111000
Q ss_pred ---------------eEE-------------EEEe--cchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC
Q psy10478 205 ---------------LYL-------------AASV--KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254 (451)
Q Consensus 205 ---------------l~~-------------~~~~--~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~ 254 (451)
-.+ .+.. .....+..+...+... ...+.+|||.+...+...+.+.|...
T Consensus 358 LEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~-~~~GaILVFLPG~~eI~~~~~~L~~~ 436 (924)
T KOG0920|consen 358 LEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDER-EFEGAILVFLPGWEEILQLKELLEVN 436 (924)
T ss_pred HHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccC-CCCceEEEEcCCHHHHHHHHHHhhhc
Confidence 000 0000 1123344455555444 36789999999999999999999753
Q ss_pred -------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC-----------------
Q psy10478 255 -------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK----------------- 310 (451)
Q Consensus 255 -------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~----------------- 310 (451)
.+-+..+|+.|+..+++.++..--.|.-+|++||++++.+|.++||-+||+.+.-+
T Consensus 437 ~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~w 516 (924)
T KOG0920|consen 437 LPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSW 516 (924)
T ss_pred cccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheee
Confidence 25678899999999999999999999999999999999999999999999866433
Q ss_pred -CHHHHHHHhcccCCCCCCcEEEEEeecccHHHH
Q psy10478 311 -DLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKN 343 (451)
Q Consensus 311 -s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~ 343 (451)
|.+.-.||.|||||.- +|.|+-+|+...+..+
T Consensus 517 vSkAna~QR~GRAGRv~-~G~cy~L~~~~~~~~~ 549 (924)
T KOG0920|consen 517 VSKANAKQRRGRAGRVR-PGICYHLYTRSRYEKL 549 (924)
T ss_pred ccccchHHhcccccCcc-CCeeEEeechhhhhhc
Confidence 5667789999999994 8999999998776654
No 112
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.4e-15 Score=117.40 Aligned_cols=81 Identities=40% Similarity=0.567 Sum_probs=77.6
Q ss_pred HHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCC
Q psy10478 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRD 325 (451)
Q Consensus 246 ~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 325 (451)
.+++.|.+.++.+..+||++++++|..+++.|.++...+|++|+++++|+|+|+++.||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy10478 326 G 326 (451)
Q Consensus 326 g 326 (451)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 113
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=2.2e-14 Score=152.28 Aligned_cols=167 Identities=17% Similarity=0.107 Sum_probs=136.5
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEE----EEecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLA----ASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+-+||+|+..+. ..+.+.. +-.++..+.++|..... +......+...+.+.+......+.|+||||+|+..
T Consensus 381 kLsGMTGTa~te~-~Ef~~iY---~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTEA-YEFQQIY---NLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhHH-HHHHHHh---CCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 4668999986543 3444444 44577888888876432 22223567777877777767799999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCC------------------------
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD------------------------ 299 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~------------------------ 299 (451)
++.+++.|.+.|+++..+||.+...++..+.+.|+.|. |+|||+++|||+|+.=
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999994 9999999999999851
Q ss_pred ---------c-----cEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 300 ---------V-----RCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 300 ---------v-----~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
| =+||-...+.|..-=-|-.|||||-|.||.+..|++-+|-
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1 1678788888888889999999999999999999887654
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=2.9e-14 Score=150.88 Aligned_cols=167 Identities=15% Similarity=0.095 Sum_probs=136.8
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEE----EecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAA----SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+.+||+|+..+. ..+.+.. +-.++..+.++|...... ......+..++.+.+......+.++||||+|+..
T Consensus 386 kL~GMTGTa~te~-~Ef~~iY---~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 386 KLAGMTGTADTEA-FEFQHIY---GLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred HhhcccCCChHHH-HHHHHHh---CCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 4668999986643 3344444 445777888888654332 1222567777777777766789999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCC------------------------
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD------------------------ 299 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~------------------------ 299 (451)
++.++..|...|+++..+|+.++..++..+.+.|+.|. |+|||+++|||+|+.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999851
Q ss_pred --------c-----cEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 300 --------V-----RCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 300 --------v-----~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
| =+||-...+.|..-=-|-.|||||-|.||.+..|++-+|-
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 1688888888988889999999999999999999887664
No 115
>KOG4150|consensus
Probab=99.57 E-value=1.7e-14 Score=142.28 Aligned_cols=211 Identities=16% Similarity=0.159 Sum_probs=151.1
Q ss_pred cccEEEEcccccccc-CCCCcHHHHHHHHHhhccC---CCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCC-CCCce
Q psy10478 131 RIVLIAIDEAHCVSQ-WGHDFRPSYRCLSELRLPL---PDVPILAVTATATPVVIDDICTSLMLRDPNIINTGF-DRPNL 205 (451)
Q Consensus 131 ~l~~vViDEah~~~~-~g~~fr~~~~~l~~l~~~~---~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~-~~~~l 205 (451)
...++++||+|...- .|......++.+..+..-+ .+.+++-.+||....++. .....++.+..++.... ....-
T Consensus 412 ~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~K 490 (1034)
T KOG4150|consen 412 EELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSEK 490 (1034)
T ss_pred HHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCccc
Confidence 366789999997642 2332344555555554433 367788888888666542 35556677666654322 22222
Q ss_pred EEEEEecc---------hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC----C----CCeeeecCCCCHH
Q psy10478 206 YLAASVKQ---------DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN----G----IQNRPYHAHISLK 268 (451)
Q Consensus 206 ~~~~~~~~---------~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~----~----~~v~~~h~~l~~~ 268 (451)
.+.++... +.++.+...++.+....+-++|-||.+++.|+-+....++. + -.+..|.||...+
T Consensus 491 ~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~ 570 (1034)
T KOG4150|consen 491 LFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAE 570 (1034)
T ss_pred eEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchh
Confidence 33333221 33344444444444447889999999999999887776643 1 2366799999999
Q ss_pred HHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEee--cccHHH
Q psy10478 269 QRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK--TADFTK 342 (451)
Q Consensus 269 ~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~--~~d~~~ 342 (451)
+|++++..+-.|++.-++||++++.|||+..++.|++.|+|.|++.+.|..|||||..+++.++.+.. |-|...
T Consensus 571 DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y 646 (1034)
T KOG4150|consen 571 DRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYY 646 (1034)
T ss_pred hHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999888766654 444443
No 116
>KOG0385|consensus
Probab=99.47 E-value=2e-13 Score=139.28 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCC---ceEEEEccccc
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDL---IKVVVATCAFG 292 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~---~~iLVaT~~~~ 292 (451)
++..|.+++......|.+||||..-....+-+..++.-.++....+.|+++.++|...++.|.... .-.|++|-+.|
T Consensus 472 Km~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGG 551 (971)
T KOG0385|consen 472 KMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGG 551 (971)
T ss_pred ceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccc
Confidence 344455555555558899999999999899999988889999999999999999999999998654 44889999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEE
Q psy10478 293 MGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334 (451)
Q Consensus 293 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l 334 (451)
.|||+...++||.||..+++..=+|..-||-|-|+...+.+|
T Consensus 552 LGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 552 LGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred cccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 999999999999999999999999999999999987665554
No 117
>KOG0953|consensus
Probab=99.46 E-value=1.1e-12 Score=129.70 Aligned_cols=272 Identities=18% Similarity=0.176 Sum_probs=158.3
Q ss_pred hhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhh----hhcccceeccccCCCCcchhhccccc
Q psy10478 39 NHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVL----IAIDEAHCVSQWGHDFRPSYRCLSEL 114 (451)
Q Consensus 39 a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~----~~~de~~~~~~~~~~~~~~~~~~~~l 114 (451)
++-++||+|-...+ .+..+++| +|+.|-+|+..+ ....+...++ ++..|.... ...+.+..-..+..+-
T Consensus 197 ~GPTNSGKTy~ALq-rl~~aksG----vycGPLrLLA~E-V~~r~na~gipCdL~TGeE~~~~-~~~~~~a~hvScTVEM 269 (700)
T KOG0953|consen 197 VGPTNSGKTYRALQ-RLKSAKSG----VYCGPLRLLAHE-VYDRLNALGIPCDLLTGEERRFV-LDNGNPAQHVSCTVEM 269 (700)
T ss_pred eCCCCCchhHHHHH-HHhhhccc----eecchHHHHHHH-HHHHhhhcCCCccccccceeeec-CCCCCcccceEEEEEE
Confidence 44577777765432 23445555 999999999876 6665544422 111111100 0001111111111111
Q ss_pred ccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCe
Q psy10478 115 RLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPN 194 (451)
Q Consensus 115 ~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~ 194 (451)
. +--..++..||||.++|.+..+.|...-..|+.... .+.+-+ .|.+.+-+.+.+.+....
T Consensus 270 ~-----------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad---EiHLCG-----epsvldlV~~i~k~TGd~ 330 (700)
T KOG0953|consen 270 V-----------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD---EIHLCG-----EPSVLDLVRKILKMTGDD 330 (700)
T ss_pred e-----------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhh---hhhccC-----CchHHHHHHHHHhhcCCe
Confidence 1 111368899999999998644333332222221110 111111 133333333333333332
Q ss_pred EEecCCCCCc-eEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCCHHHHHH
Q psy10478 195 IINTGFDRPN-LYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHISLKQRKE 272 (451)
Q Consensus 195 ~~~~~~~~~~-l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~~~~R~~ 272 (451)
+.....+|-+ +. ..+.+..-++.. .+|..++ |-|++..-.+...+.+.|.. +++++|+++++.|.+
T Consensus 331 vev~~YeRl~pL~---------v~~~~~~sl~nl-k~GDCvV--~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~a 398 (700)
T KOG0953|consen 331 VEVREYERLSPLV---------VEETALGSLSNL-KPGDCVV--AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLA 398 (700)
T ss_pred eEEEeecccCcce---------ehhhhhhhhccC-CCCCeEE--EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHH
Confidence 2222222211 11 011122222221 1444433 44678888888999888765 999999999999999
Q ss_pred HHHHhhc--CCceEEEEccccccccccCCccEEEEeCCCC---------CHHHHHHHhcccCCCCCC---cEEEEEeecc
Q psy10478 273 IHGLFVK--DLIKVVVATCAFGMGIDKPDVRCVIHYGAPK---------DLSAYYQEIGRAGRDGLS---SVCYTFYKTA 338 (451)
Q Consensus 273 ~~~~f~~--g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~---------s~~~y~Qr~GRagR~g~~---g~~i~l~~~~ 338 (451)
--..|.+ ++.+||||||+.|||+|+ +|+.||.++.-+ +..+..|-+|||||.|.. |.+..+ ..+
T Consensus 399 QA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl-~~e 476 (700)
T KOG0953|consen 399 QAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL-HSE 476 (700)
T ss_pred HHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe-eHh
Confidence 9999997 899999999999999999 699999888653 788999999999998743 554444 667
Q ss_pred cHHHHhhhhcCC
Q psy10478 339 DFTKNNMIFQPN 350 (451)
Q Consensus 339 d~~~~~~~~~~~ 350 (451)
|+..++..++..
T Consensus 477 DL~~L~~~l~~p 488 (700)
T KOG0953|consen 477 DLKLLKRILKRP 488 (700)
T ss_pred hHHHHHHHHhCC
Confidence 888888888754
No 118
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.43 E-value=4.7e-12 Score=133.78 Aligned_cols=241 Identities=10% Similarity=-0.010 Sum_probs=157.5
Q ss_pred hhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccccCC
Q psy10478 39 NHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118 (451)
Q Consensus 39 a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (451)
.+.+||+.+..++...|..+.+|+.+|+++|...++.+.
T Consensus 217 v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvFaP~----------------------------------------- 255 (665)
T PRK14873 217 VAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVFAPV----------------------------------------- 255 (665)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEEecc-----------------------------------------
Confidence 667999999999999999999999999999999998754
Q ss_pred CCchhhhccccCcccEEEEccccccccC-CCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCC--C-CCe
Q psy10478 119 PDVPILFLSRIPRIVLIAIDEAHCVSQW-GHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML--R-DPN 194 (451)
Q Consensus 119 ~~~~~~~l~~l~~l~~vViDEah~~~~~-g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l--~-~~~ 194 (451)
.++++|||||-|.-+.. ....+..-+.+..++....++++|+.|||++-+........... . ...
T Consensus 256 -----------~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~~g~~~~~~~~~~ 324 (665)
T PRK14873 256 -----------EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVESGWAHDLVAPRP 324 (665)
T ss_pred -----------CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHhcCcceeeccccc
Confidence 57999999999976632 22234445678878888889999999999998876543322110 0 000
Q ss_pred EEecCCCCCceEEEEEec--------c--hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHH-----------------
Q psy10478 195 IINTGFDRPNLYLAASVK--------Q--DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKV----------------- 247 (451)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~--------~--~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l----------------- 247 (451)
.. ....|.+.+.-... . ......+.+.+++....+ ++|||.|.+..+..+
T Consensus 325 ~~--~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~ 401 (665)
T PRK14873 325 VV--RARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLACARCRTPARCRHCTGP 401 (665)
T ss_pred cc--cCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEhhhCcCeeECCCCCCc
Confidence 11 11223333332111 0 012234555555555467 999999987764433
Q ss_pred ------------------------------------------HHHHHHC--CCCeeeecCCCCHHHHHHHHHHhhcCCce
Q psy10478 248 ------------------------------------------CDVLSRN--GIQNRPYHAHISLKQRKEIHGLFVKDLIK 283 (451)
Q Consensus 248 ------------------------------------------~~~L~~~--~~~v~~~h~~l~~~~R~~~~~~f~~g~~~ 283 (451)
.+.|.+. +.++..+ +++.+++.|. ++.+
T Consensus 402 L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~-------d~d~~l~~~~-~~~~ 473 (665)
T PRK14873 402 LGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS-------GGDQVVDTVD-AGPA 473 (665)
T ss_pred eeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE-------ChHHHHHhhc-cCCC
Confidence 2222222 1122211 2345777886 5899
Q ss_pred EEEEcc----ccccccccCCccEEEEeCC------CC------CHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhh
Q psy10478 284 VVVATC----AFGMGIDKPDVRCVIHYGA------PK------DLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIF 347 (451)
Q Consensus 284 iLVaT~----~~~~GiD~p~v~~VI~~~~------p~------s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~ 347 (451)
|||+|+ ++. +++..|+..|. |. +...+.|-+||+||.+.+|.+++...++. ..++.+.
T Consensus 474 IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~~-~~~~~l~ 547 (665)
T PRK14873 474 LVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESSL-PTVQALI 547 (665)
T ss_pred EEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCC-HHHHHHH
Confidence 999999 555 36777776553 22 46677899999999999999998865443 4444444
Q ss_pred c
Q psy10478 348 Q 348 (451)
Q Consensus 348 ~ 348 (451)
.
T Consensus 548 ~ 548 (665)
T PRK14873 548 R 548 (665)
T ss_pred h
Confidence 3
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.42 E-value=6.8e-13 Score=139.54 Aligned_cols=209 Identities=16% Similarity=0.238 Sum_probs=142.8
Q ss_pred hcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccccCCCCc
Q psy10478 42 KGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 121 (451)
Q Consensus 42 ~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (451)
+||..+..+....++++.+|.++|+++|-..|..+. +.|...
T Consensus 161 yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~---e~L~~~----------------------------------- 202 (1187)
T COG1110 161 YHSALPTKEKEEALERIESGDFDILITTSQFLSKRF---EELSKL----------------------------------- 202 (1187)
T ss_pred eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhH---HHhccc-----------------------------------
Confidence 899999999999999999999999999998887643 333322
Q ss_pred hhhhccccCcccEEEEccccccccCCCC---------cHH--------------HH------HHHHHh---------hcc
Q psy10478 122 PILFLSRIPRIVLIAIDEAHCVSQWGHD---------FRP--------------SY------RCLSEL---------RLP 163 (451)
Q Consensus 122 ~~~~l~~l~~l~~vViDEah~~~~~g~~---------fr~--------------~~------~~l~~l---------~~~ 163 (451)
++++|++|.+|.++.-+.. |.. .+ .++... ...
T Consensus 203 ---------kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r 273 (1187)
T COG1110 203 ---------KFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKR 273 (1187)
T ss_pred ---------CCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 6888888888876543211 111 00 011100 112
Q ss_pred CCCCCEEEEEeeCChHH-HHHH-HHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCC-
Q psy10478 164 LPDVPILAVTATATPVV-IDDI-CTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPT- 240 (451)
Q Consensus 164 ~~~~~~v~lSAT~~~~~-~~~i-~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t- 240 (451)
.....++..|||..+.- +..+ ...++..-..- ...-|......+.. .....+.++++. -+.-+|||++.
T Consensus 274 ~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~--~~~LRNIvD~y~~~---~~~e~~~elvk~---lG~GgLIfV~~d 345 (1187)
T COG1110 274 RKLGILVVSSATGKPRGSRLKLFRELLGFEVGSG--GEGLRNIVDIYVES---ESLEKVVELVKK---LGDGGLIFVPID 345 (1187)
T ss_pred cCCceEEEeeccCCCCCchHHHHHHHhCCccCcc--chhhhheeeeeccC---ccHHHHHHHHHH---hCCCeEEEEEcH
Confidence 23466889999987644 2223 33444332110 00011111111111 344556666665 56789999999
Q ss_pred --hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEc----cccccccccCC-ccEEEEeCCCC
Q psy10478 241 --KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT----CAFGMGIDKPD-VRCVIHYGAPK 310 (451)
Q Consensus 241 --~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT----~~~~~GiD~p~-v~~VI~~~~p~ 310 (451)
++.++++++.|+++|+++..+|+. ..+.++.|..|++++||+. .++-||+|+|. ++++|.+|.|+
T Consensus 346 ~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 346 YGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred HhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 999999999999999999999994 3788999999999999986 57999999995 68999999995
No 120
>KOG0949|consensus
Probab=99.38 E-value=6.1e-12 Score=131.35 Aligned_cols=77 Identities=29% Similarity=0.331 Sum_probs=64.6
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeC-CCCCHHHHHHHhcccCCCCCC--cEEEEE
Q psy10478 258 NRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG-APKDLSAYYQEIGRAGRDGLS--SVCYTF 334 (451)
Q Consensus 258 v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~-~p~s~~~y~Qr~GRagR~g~~--g~~i~l 334 (451)
+..+|++|...+|..++-.|+.|...||+||.+++-|||.|.-++|+-.| +.-++-.|.|++|||||.|-. |.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 56799999999999999999999999999999999999999555555444 334888999999999999854 555444
No 121
>KOG0925|consensus
Probab=99.36 E-value=2.2e-11 Score=118.77 Aligned_cols=196 Identities=21% Similarity=0.312 Sum_probs=131.9
Q ss_pred cCcccEEEEccccccccCCCCcHHHH--HHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCC-ce
Q psy10478 129 IPRIVLIAIDEAHCVSQWGHDFRPSY--RCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRP-NL 205 (451)
Q Consensus 129 l~~l~~vViDEah~~~~~g~~fr~~~--~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~-~l 205 (451)
+++++.||+||||.-. ...+. ..+.......|+..+|.||||+...-.+ ..+ .++.++.++...| .+
T Consensus 157 l~~y~viiLDeahERt-----lATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq---~yf--~n~Pll~vpg~~PvEi 226 (699)
T KOG0925|consen 157 LGRYGVIILDEAHERT-----LATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQ---RYF--GNAPLLAVPGTHPVEI 226 (699)
T ss_pred cccccEEEechhhhhh-----HHHHHHHHHHHHHHhhCCCceEEEeecccchHHHH---HHh--CCCCeeecCCCCceEE
Confidence 6789999999999643 22222 2234444445899999999999765433 333 2444454443333 23
Q ss_pred EEEEEecchhHHHHHHHHHhhcc-CCCCcEEEEcCChhHHHHHHHHHHHC---------CCCeeeecCCCCHHHHHHHHH
Q psy10478 206 YLAASVKQDDIMADLRKLTNFEN-QFEGSTIIYCPTKVICEKVCDVLSRN---------GIQNRPYHAHISLKQRKEIHG 275 (451)
Q Consensus 206 ~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~---------~~~v~~~h~~l~~~~R~~~~~ 275 (451)
+|......+..-..+...+..+. ...+.++||....++.+..++.+... ..+|..+| +.++..+++
T Consensus 227 ~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFe 302 (699)
T KOG0925|consen 227 FYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFE 302 (699)
T ss_pred EecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccC
Confidence 33333333333334444443332 25788999999999988888877632 25677777 455555555
Q ss_pred Hhhc---C--CceEEEEccccccccccCCccEEEEeCC------------------CCCHHHHHHHhcccCCCCCCcEEE
Q psy10478 276 LFVK---D--LIKVVVATCAFGMGIDKPDVRCVIHYGA------------------PKDLSAYYQEIGRAGRDGLSSVCY 332 (451)
Q Consensus 276 ~f~~---g--~~~iLVaT~~~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i 332 (451)
.... | .-+|+|+|++++..+.++.|.+||+-|+ |-|..+-.||.|||||.. +|.|+
T Consensus 303 p~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~-pGkcf 381 (699)
T KOG0925|consen 303 PAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCF 381 (699)
T ss_pred CCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC-CCceE
Confidence 4332 2 3469999999999999999999998664 448889999999999984 99999
Q ss_pred EEeeccc
Q psy10478 333 TFYKTAD 339 (451)
Q Consensus 333 ~l~~~~d 339 (451)
-+|+.+-
T Consensus 382 rLYte~~ 388 (699)
T KOG0925|consen 382 RLYTEEA 388 (699)
T ss_pred EeecHHh
Confidence 9998754
No 122
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=4.2e-11 Score=126.16 Aligned_cols=166 Identities=16% Similarity=0.104 Sum_probs=125.6
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEE----ecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAAS----VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+-+||+|+..+. ..+.+.. +-.++..++++|....... .....+..++.+.+......+.|+||.|.|++.
T Consensus 363 kLsGMTGTA~te~-~Ef~~iY---~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~ 438 (925)
T PRK12903 363 KLSGMTGTAKTEE-QEFIDIY---NMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVED 438 (925)
T ss_pred hhhccCCCCHHHH-HHHHHHh---CCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 4678999986543 3444433 4457788888887654321 223566777777777666689999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC-CceEEEEccccccccccCCcc--------EEEEeCCCCCHHH
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD-LIKVVVATCAFGMGIDKPDVR--------CVIHYGAPKDLSA 314 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiD~p~v~--------~VI~~~~p~s~~~ 314 (451)
++.++..|.+.|++...+++.-...|- .++. ..| .-.|.|||+++|||.|+.=-. +||....|.|..-
T Consensus 439 SE~ls~~L~~~gi~h~vLNAk~~e~EA-~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRI 515 (925)
T PRK12903 439 SETLHELLLEANIPHTVLNAKQNAREA-EIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRI 515 (925)
T ss_pred HHHHHHHHHHCCCCceeecccchhhHH-HHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHH
Confidence 999999999999999999886432222 2222 345 446999999999999995222 8999999999888
Q ss_pred HHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 315 YYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 315 y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
--|..||+||.|.+|.+..|.+-+|-
T Consensus 516 DnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 516 DNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred HHHHhcccccCCCCCcceEEEecchH
Confidence 88999999999999999888886653
No 123
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.30 E-value=4.5e-11 Score=127.80 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=75.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHH---------------------HHHHHHHHhhc-CCce
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLK---------------------QRKEIHGLFVK-DLIK 283 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~---------------------~R~~~~~~f~~-g~~~ 283 (451)
+.+++|||.++.+|..+.+.|.+. +.....+++..+.+ ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 589999999999999999998765 23455566554322 22467888976 6889
Q ss_pred EEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCC
Q psy10478 284 VVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRD 325 (451)
Q Consensus 284 iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 325 (451)
|||.++++..|+|.|.+.+++...+-++. .++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999999987776664 589999999993
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=2.6e-10 Score=118.61 Aligned_cols=166 Identities=18% Similarity=0.132 Sum_probs=126.5
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEE----EEecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLA----ASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+.+||+|+.... +.+.+..++ .++..++++|..... +......+...+.+.+......+.|+||.+.|+..
T Consensus 364 kLsGMTGTa~t~~-~Ef~~iY~l---~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAG-EQLRQFYDL---GVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHH-HHHHHHhCC---cEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 4679999996543 445555543 367788888876443 22223567777777776666699999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCC-ceEEEEccccccccccC----------Cc-----cEEEEeC
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDL-IKVVVATCAFGMGIDKP----------DV-----RCVIHYG 307 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~p----------~v-----~~VI~~~ 307 (451)
++.++..|.+.|++...+++.-...| .+++. ..|+ -.|.|||+++|||.|+. .| =+||-..
T Consensus 440 SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTe 516 (764)
T PRK12326 440 SEELAERLRAAGVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTG 516 (764)
T ss_pred HHHHHHHHHhCCCcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEecc
Confidence 99999999999999999998744333 22222 2343 35999999999999985 22 2788899
Q ss_pred CCCCHHHHHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 308 ~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
.|.|..---|-.|||||-|.+|.+..|++-+|-
T Consensus 517 rheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 517 RHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred CCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 999999999999999999999999999886654
No 125
>KOG0384|consensus
Probab=99.24 E-value=2.9e-11 Score=129.23 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=100.3
Q ss_pred cCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc---CCceEEEEccccccccccCCccEEE
Q psy10478 228 NQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK---DLIKVVVATCAFGMGIDKPDVRCVI 304 (451)
Q Consensus 228 ~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~---g~~~iLVaT~~~~~GiD~p~v~~VI 304 (451)
...|.+||||..-+...+-|+++|...+++...+.|++..+.|+.+++.|.. ...-.|.||-+.|-|||+...+.||
T Consensus 696 k~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVI 775 (1373)
T KOG0384|consen 696 KEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVI 775 (1373)
T ss_pred hcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEE
Confidence 3467899999999999999999999999999999999999999999999985 4566999999999999999999999
Q ss_pred EeCCCCCHHHHHHHhcccCCCCCCcEE--EEEeecc
Q psy10478 305 HYGAPKDLSAYYQEIGRAGRDGLSSVC--YTFYKTA 338 (451)
Q Consensus 305 ~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~l~~~~ 338 (451)
.||..+++..=+|..-||-|-|+...+ +-|++..
T Consensus 776 IFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 776 IFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 999999999999999999999987554 4445544
No 126
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=4.2e-10 Score=120.02 Aligned_cols=166 Identities=17% Similarity=0.114 Sum_probs=125.1
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEE----EecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAA----SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
++.+||+|+..+ ...+.+..+ -.++..+.++|...... ......+...+.+-+......+.|+||-|.|+..
T Consensus 505 kl~GmTGTa~~e-~~Ef~~iY~---l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~ 580 (970)
T PRK12899 505 KLAGMTGTAITE-SREFKEIYN---LYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEV 580 (970)
T ss_pred hhcccCCCCHHH-HHHHHHHhC---CCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 577999998554 344555444 35777888888654322 1122466677777666666689999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCC-ceEEEEccccccccccC---Ccc-----EEEEeCCCCCHHH
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDL-IKVVVATCAFGMGIDKP---DVR-----CVIHYGAPKDLSA 314 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~p---~v~-----~VI~~~~p~s~~~ 314 (451)
.+.++..|.+.|++...+++.-...|-.-+- ..|+ -.|.|||+++|||.|+. .|. +||....|.|..-
T Consensus 581 se~ls~~L~~~gi~h~vLNak~~~~Ea~iia---~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Ri 657 (970)
T PRK12899 581 SEKLSRILRQNRIEHTVLNAKNHAQEAEIIA---GAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRI 657 (970)
T ss_pred HHHHHHHHHHcCCcceecccchhhhHHHHHH---hcCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHH
Confidence 9999999999999998888874333322222 2343 46999999999999984 222 7888899999999
Q ss_pred HHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 315 YYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 315 y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
-.|-.||+||-|.+|.+..|++-+|-
T Consensus 658 d~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 658 DRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred HHHHhcccccCCCCCceeEEEEcchH
Confidence 99999999999999999999887653
No 127
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=8.2e-10 Score=118.18 Aligned_cols=167 Identities=16% Similarity=0.118 Sum_probs=126.2
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEE----EecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAA----SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+-+||+|+..+. ..+.... +-.++..+.++|...... ......++.++.+.+......+.|+||-+.|+..
T Consensus 565 kLsGMTGTA~tea-~Ef~~IY---~L~Vv~IPTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~ 640 (1112)
T PRK12901 565 KLAGMTGTAETEA-GEFWDIY---KLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEI 640 (1112)
T ss_pred hhcccCCCCHHHH-HHHHHHh---CCCEEECCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHH
Confidence 3568999986543 3344444 345778888888764432 1122567778887777777799999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccC---Cc-----cEEEEeCCCCCHHHH
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP---DV-----RCVIHYGAPKDLSAY 315 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p---~v-----~~VI~~~~p~s~~~y 315 (451)
.+.+++.|...|++...+++.....|-.-+-++=+ .-.|-|||+++|||.|+. .| =+||-...+.|..--
T Consensus 641 SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID 718 (1112)
T PRK12901 641 SELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVD 718 (1112)
T ss_pred HHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHH
Confidence 99999999999999888888754444333333222 335999999999999985 22 378888999999999
Q ss_pred HHHhcccCCCCCCcEEEEEeecccH
Q psy10478 316 YQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 316 ~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
-|-.|||||-|.+|.+..|++-+|-
T Consensus 719 ~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 719 RQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred HHHhcccccCCCCCcceEEEEcccH
Confidence 9999999999999999998887653
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=1.2e-09 Score=116.30 Aligned_cols=166 Identities=17% Similarity=0.144 Sum_probs=124.7
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEE----EEecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLA----ASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+-+||+|+..+. ..+.+.. +-.++..+.++|..... +......+...+.+-+......+.|+||-+.|+..
T Consensus 386 kLsGMTGTa~te~-~Ef~~iY---~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 386 KLSGMTGTADTEA-FEFRQIY---GLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hhccCCCCCHHHH-HHHHHHh---CCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 4678999986544 3444443 44577788888865322 22223567778887777777799999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC-CceEEEEccccccccccC------------------------
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD-LIKVVVATCAFGMGIDKP------------------------ 298 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g-~~~iLVaT~~~~~GiD~p------------------------ 298 (451)
.+.++..|.+.|++...+++.....|-. ++. ..| .-.|.|||+++|||.|+.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~ 538 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIK 538 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHH
Confidence 9999999999999888888764433322 222 345 345999999999999993
Q ss_pred --------Ccc-----EEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 299 --------DVR-----CVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 299 --------~v~-----~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
.|. +||-...|.|..-=-|-.|||||-|.||.+..|++-+|-
T Consensus 539 ~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 539 ADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 121 688888999998899999999999999999999887654
No 129
>KOG0387|consensus
Probab=99.09 E-value=2.3e-09 Score=110.58 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHH-HCCCCeeeecCCCCHHHHHHHHHHhhcCCce--EEEEccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLS-RNGIQNRPYHAHISLKQRKEIHGLFVKDLIK--VVVATCA 290 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~-~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~--iLVaT~~ 290 (451)
..++..+..++......+.++|+|..|+.....+...|. ..|+....+.|..+...|..++++|.+++.- .|++|.+
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 346777888887777789999999999999999999999 5799999999999999999999999987644 7789999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEE
Q psy10478 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334 (451)
Q Consensus 291 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l 334 (451)
.|-|+|+...+.||.||+.++++.=.|..-||-|-|+.-.+++|
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 99999999999999999999999999999999999987555444
No 130
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.08 E-value=2.9e-10 Score=118.26 Aligned_cols=106 Identities=15% Similarity=0.260 Sum_probs=81.0
Q ss_pred HHHHHHHhh--ccCCCCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhc-CC-ceEEEEc
Q psy10478 218 ADLRKLTNF--ENQFEGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVK-DL-IKVVVAT 288 (451)
Q Consensus 218 ~~L~~~l~~--~~~~~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~-g~-~~iLVaT 288 (451)
..+..++.. ....-+|+||||.+..+|+.+...|.+. |--+..+.|+-.. -+..++.|.. .+ -+|.|+.
T Consensus 411 r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~Iaitv 488 (875)
T COG4096 411 RELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQALIDNFIDKEKYPRIAITV 488 (875)
T ss_pred HHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHHHHHHHhcCCCCceEEeh
Confidence 344455554 2323679999999999999999999875 2335566665433 3344555554 33 3488888
Q ss_pred cccccccccCCccEEEEeCCCCCHHHHHHHhcccCCC
Q psy10478 289 CAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRD 325 (451)
Q Consensus 289 ~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 325 (451)
+++..|||+|.|..++.+..-.|..-|.||+||+-|.
T Consensus 489 dlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 489 DLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999999999999999999885
No 131
>KOG1123|consensus
Probab=99.07 E-value=5.4e-10 Score=109.63 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=123.1
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEec-----------
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINT----------- 198 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~----------- 198 (451)
..++++++||+|.+.... ||..+..+.. ..-+++|||+-.+.-+ |...-.+-.|.+...
T Consensus 421 ~EWGllllDEVHvvPA~M--FRRVlsiv~a-------HcKLGLTATLvREDdK-I~DLNFLIGPKlYEAnWmdL~~kGhI 490 (776)
T KOG1123|consen 421 REWGLLLLDEVHVVPAKM--FRRVLSIVQA-------HCKLGLTATLVREDDK-ITDLNFLIGPKLYEANWMDLQKKGHI 490 (776)
T ss_pred CeeeeEEeehhccchHHH--HHHHHHHHHH-------HhhccceeEEeecccc-ccccceeecchhhhccHHHHHhCCce
Confidence 479999999999987643 6665544422 3448999998654311 111111112211111
Q ss_pred ----------C-------------CCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCC
Q psy10478 199 ----------G-------------FDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNG 255 (451)
Q Consensus 199 ----------~-------------~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~ 255 (451)
+ ..+..+-|. ....++..-.-+|+.+...+.++|||..+.-.....|-.|.
T Consensus 491 A~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyv---MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~--- 564 (776)
T KOG1123|consen 491 AKVQCAEVWCPMTPEFYREYLRENTRKRMLLYV---MNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG--- 564 (776)
T ss_pred eEEeeeeeecCCCHHHHHHHHhhhhhhhheeee---cCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC---
Confidence 0 001111121 23456666777777777799999999999877776666554
Q ss_pred CCeeeecCCCCHHHHHHHHHHhhc-CCceEEEEccccccccccCCccEEEEeCCCC-CHHHHHHHhcccCCC
Q psy10478 256 IQNRPYHAHISLKQRKEIHGLFVK-DLIKVVVATCAFGMGIDKPDVRCVIHYGAPK-DLSAYYQEIGRAGRD 325 (451)
Q Consensus 256 ~~v~~~h~~l~~~~R~~~~~~f~~-g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~ 325 (451)
--+++|..++.+|.+|++.|+. ..++.++-+.+....||+|..++.|+..... |..+=.||.||.-|+
T Consensus 565 --KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 565 --KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRA 634 (776)
T ss_pred --CceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHH
Confidence 3467999999999999999995 5788899999999999999999999877654 778889999998775
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.02 E-value=8.2e-09 Score=109.66 Aligned_cols=124 Identities=15% Similarity=0.067 Sum_probs=88.4
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEE----EecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAA----SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+.+||+|+..+ ...+.+.. +-.++..++++|...... ......+...+.+.+......+.|+||-|.|+..
T Consensus 361 kL~GMTGTa~te-~~Ef~~iY---~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~ 436 (870)
T CHL00122 361 KLSGMTGTAKTE-ELEFEKIY---NLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEK 436 (870)
T ss_pred hhcccCCCCHHH-HHHHHHHh---CCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHH
Confidence 467899998553 34444444 445777888888764432 1222456667777666666699999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCH-HHHHHHHHHhhcCC-ceEEEEcccccccccc
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISL-KQRKEIHGLFVKDL-IKVVVATCAFGMGIDK 297 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~-~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~ 297 (451)
++.++..|.+.|++...+++.-.. +.-.+++.. .|+ -.|.|||+++|||.|+
T Consensus 437 SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 437 SELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred HHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCe
Confidence 999999999999999999996322 222233332 343 4599999999999997
No 133
>KOG0389|consensus
Probab=98.94 E-value=1e-08 Score=105.75 Aligned_cols=124 Identities=17% Similarity=0.159 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCC--ceEEEEcccccc
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDL--IKVVVATCAFGM 293 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~--~~iLVaT~~~~~ 293 (451)
+...|..++......|.+++||..--...+-|...|..+++....+.|...-.+|+.+++.|...+ .-.|.+|-+.|-
T Consensus 762 K~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~ 841 (941)
T KOG0389|consen 762 KCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGF 841 (941)
T ss_pred hHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcc
Confidence 334444455444557899999999999999999999999999999999999999999999998764 337889999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcE--EEEEeeccc
Q psy10478 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSV--CYTFYKTAD 339 (451)
Q Consensus 294 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~--~i~l~~~~d 339 (451)
|||+...++||.+|...++-.=.|.--||-|.|+.-. ++-+++..-
T Consensus 842 GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 842 GINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred eecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 9999999999999999999889999999999997644 444555543
No 134
>KOG0390|consensus
Probab=98.93 E-value=2e-08 Score=105.82 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=73.4
Q ss_pred CCCCeeeecCCCCHHHHHHHHHHhhcCCce---EEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcE
Q psy10478 254 NGIQNRPYHAHISLKQRKEIHGLFVKDLIK---VVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSV 330 (451)
Q Consensus 254 ~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~---iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 330 (451)
.|+.+..+||.|+..+|+.+.+.|.+..-. .|.+|.+.|.||++-+.+.||.+|++++++.=.|.++||-|+|+.-.
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~ 697 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKP 697 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcce
Confidence 488899999999999999999999974433 66678899999999999999999999999999999999999999887
Q ss_pred EEEE
Q psy10478 331 CYTF 334 (451)
Q Consensus 331 ~i~l 334 (451)
|++|
T Consensus 698 v~iY 701 (776)
T KOG0390|consen 698 VYIY 701 (776)
T ss_pred EEEE
Confidence 7776
No 135
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=6.2e-08 Score=103.00 Aligned_cols=125 Identities=15% Similarity=0.089 Sum_probs=89.4
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEE----ecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAAS----VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+.+||+|+..+. ..+.+.. +-.++..+.++|....... .....+...+.+.+......+.|+||-+.|++.
T Consensus 376 kLsGMTGTa~te~-~Ef~~iY---~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~ 451 (939)
T PRK12902 376 KLAGMTGTAKTEE-VEFEKTY---KLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEK 451 (939)
T ss_pred hhcccCCCCHHHH-HHHHHHh---CCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHH
Confidence 4678999985443 3344444 4457788888887644322 222566777777777666689999999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCC-CCHHHHHHHHHHhhcCC-ceEEEEccccccccccC
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAH-ISLKQRKEIHGLFVKDL-IKVVVATCAFGMGIDKP 298 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~-l~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~p 298 (451)
.+.++..|.+.|++...+++. ...+.-.+|+.. .|+ -.|-|||+++|||.|+.
T Consensus 452 SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 452 SELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 999999999999999999996 232222233332 443 35999999999999873
No 136
>KOG0951|consensus
Probab=98.81 E-value=7.8e-08 Score=103.62 Aligned_cols=302 Identities=15% Similarity=0.156 Sum_probs=186.0
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCc--chhhcc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFR--PSYRCL 111 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~--~~~~~~ 111 (451)
.+-++++-.+++++.-....++. .....+++|.+|--......+..+-.+++.. ..+.....|..-. ......
T Consensus 1160 d~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~---~G~~~~~l~ge~s~~lkl~~~ 1234 (1674)
T KOG0951|consen 1160 DNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL---LGLRIVKLTGETSLDLKLLQK 1234 (1674)
T ss_pred ceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccc---cCceEEecCCccccchHHhhh
Confidence 34444555666666443233332 3456789999997665433333333333211 1122223333322 224445
Q ss_pred cccccCCCCchhhhccccCcccEEEEccccccccC-CCCcHHH--HHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhc
Q psy10478 112 SELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQW-GHDFRPS--YRCLSELRLPLPDVPILAVTATATPVVIDDICTSL 188 (451)
Q Consensus 112 ~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~-g~~fr~~--~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l 188 (451)
.++.+.||..+-+.. ....+++.|.||.|.+... |..+.-. .+.+.. +...++.++++|..+.+.- ++ +
T Consensus 1235 ~~vii~tpe~~d~lq-~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~--q~~k~ir~v~ls~~lana~--d~---i 1306 (1674)
T KOG0951|consen 1235 GQVIISTPEQWDLLQ-SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS--QLEKKIRVVALSSSLANAR--DL---I 1306 (1674)
T ss_pred cceEEechhHHHHHh-hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH--HHHhheeEEEeehhhccch--hh---c
Confidence 788899999887764 6688999999999998732 2111111 122211 1234788999998776532 32 6
Q ss_pred CCCCCeEEecCCCC-C-ceEEEEEecc----hhHHH----HHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC----
Q psy10478 189 MLRDPNIINTGFDR-P-NLYLAASVKQ----DDIMA----DLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN---- 254 (451)
Q Consensus 189 ~l~~~~~~~~~~~~-~-~l~~~~~~~~----~~~~~----~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~---- 254 (451)
|.....+++.+..+ | ++.+.+.... ..... -....+......+++++||++++++|..++..|-..
T Consensus 1307 g~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~ 1386 (1674)
T KOG0951|consen 1307 GASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHAD 1386 (1674)
T ss_pred cccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccC
Confidence 77777777765544 3 2333333222 11111 111223333447899999999999998876654310
Q ss_pred ------------------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeC---------
Q psy10478 255 ------------------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG--------- 307 (451)
Q Consensus 255 ------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~--------- 307 (451)
..+...=|-+++..+...+...|..|.+.|+|...- -+|+-.. ...||..|
T Consensus 1387 ~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~ 1464 (1674)
T KOG0951|consen 1387 EPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEH 1464 (1674)
T ss_pred cHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceeeccccc
Confidence 111112288999999999999999999999987765 7776553 33444322
Q ss_pred --CCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhhcCCCCC
Q psy10478 308 --APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLND 353 (451)
Q Consensus 308 --~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~~~~~~~ 353 (451)
.+.+++...|++|+|.| .|.|+++....+...+++++.+.+|-
T Consensus 1465 ~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lPv 1509 (1674)
T KOG0951|consen 1465 SYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLPV 1509 (1674)
T ss_pred ccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCch
Confidence 34578999999999988 46899999999999999999998765
No 137
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.81 E-value=8.9e-08 Score=105.71 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=107.6
Q ss_pred CCEEEEEeeCChH-HHHHHHHhcCCCCCeEEec---CCC-CCceEEEEEe--------cchhHHHHHHHHHhhc-cCCCC
Q psy10478 167 VPILAVTATATPV-VIDDICTSLMLRDPNIINT---GFD-RPNLYLAASV--------KQDDIMADLRKLTNFE-NQFEG 232 (451)
Q Consensus 167 ~~~v~lSAT~~~~-~~~~i~~~l~l~~~~~~~~---~~~-~~~l~~~~~~--------~~~~~~~~L~~~l~~~-~~~~~ 232 (451)
.++|++|||++.. ..+.+.+.+|+.+...... +++ ..+..+.+.. ..+...+.+...+... ...++
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g 675 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSP 675 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 4588999999743 2456678888865433222 222 1122222110 0112222333333221 11567
Q ss_pred cEEEEcCChhHHHHHHHHHHHCC--CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCcc--EEEEeCC
Q psy10478 233 STIIYCPTKVICEKVCDVLSRNG--IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVR--CVIHYGA 308 (451)
Q Consensus 233 ~~iVF~~t~~~~~~l~~~L~~~~--~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~--~VI~~~~ 308 (451)
++|||++|.+..+.++..|.... .....+..+.. ..|.++++.|++++..||+||+.+.+|||+|+.. .||..++
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~L 754 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRL 754 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCC
Confidence 99999999999999999997621 12223333333 5789999999999999999999999999999876 5667776
Q ss_pred CC------------------------------CHHHHHHHhcccCCCCCCcEEEEEeec
Q psy10478 309 PK------------------------------DLSAYYQEIGRAGRDGLSSVCYTFYKT 337 (451)
Q Consensus 309 p~------------------------------s~~~y~Qr~GRagR~g~~g~~i~l~~~ 337 (451)
|. ....+.|.+||.=|.....-++++.++
T Consensus 755 Pf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 755 PFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 63 123457889999998754334444443
No 138
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.77 E-value=8.1e-08 Score=103.68 Aligned_cols=91 Identities=24% Similarity=0.239 Sum_probs=70.6
Q ss_pred EEEEcCChhHHHHHHHHHHHC------CCCeeeecCCCCHHHHHHHHHHh----------------------hc----CC
Q psy10478 234 TIIYCPTKVICEKVCDVLSRN------GIQNRPYHAHISLKQRKEIHGLF----------------------VK----DL 281 (451)
Q Consensus 234 ~iVF~~t~~~~~~l~~~L~~~------~~~v~~~h~~l~~~~R~~~~~~f----------------------~~----g~ 281 (451)
++|-.++++.+-.++..|... .+.+.+||+..+...|..+++.+ .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 478888888888888888754 24578899999888887777553 12 46
Q ss_pred ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCC
Q psy10478 282 IKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 282 ~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 327 (451)
..|+|+|++.+.|+|+ |.+.+| .-|.++.+.+|++||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 6799999999999997 344443 457789999999999999874
No 139
>KOG1000|consensus
Probab=98.73 E-value=1.7e-07 Score=92.31 Aligned_cols=107 Identities=14% Similarity=0.208 Sum_probs=95.1
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC-CceE-EEEccccccccccCCccEEEEe
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD-LIKV-VVATCAFGMGIDKPDVRCVIHY 306 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g-~~~i-LVaT~~~~~GiD~p~v~~VI~~ 306 (451)
.++.|.+|||.-....+.+...+.+.++....+.|..+..+|...-+.|+.. +++| +++-.+.++|+++...+.|+..
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 4678999999999999999999999999999999999999999999999964 5554 3456788999999999999999
Q ss_pred CCCCCHHHHHHHhcccCCCCCCcEEEEEe
Q psy10478 307 GAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335 (451)
Q Consensus 307 ~~p~s~~~y~Qr~GRagR~g~~g~~i~l~ 335 (451)
.+++++.-++|.-.|+-|.|+.+.+.+.|
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeEEE
Confidence 99999999999999999999886655444
No 140
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.68 E-value=2.8e-09 Score=94.14 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=96.3
Q ss_pred hcccchhhhhhcCCCChhhhcCcCccccCC-CeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcc---h
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCCDN-CRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRP---S 107 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~-~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~---~ 107 (451)
.+.+.++.+..++|+|......+.+.+.++ ..+++|++|.+.+..+ ....+...... ...+.. .+..+... .
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q-~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 88 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQ-QFERLRKFFSN--TNVRVV-LLHGGQSISEDQ 88 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHH-HHHHHHHHTTT--TTSSEE-EESTTSCHHHHH
T ss_pred cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccc-ccccccccccc--cccccc-cccccccccccc
Confidence 456678899999999998877777777665 3599999999987665 44444333111 011111 11111111 1
Q ss_pred ---hhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChH
Q psy10478 108 ---YRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPV 179 (451)
Q Consensus 108 ---~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~ 179 (451)
...-..+.+.||......... +.++++||+||+|.+..++ ++..+..+.......++.+++++|||+++.
T Consensus 89 ~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~ 165 (169)
T PF00270_consen 89 REVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRLKRFKNIQIILLSATLPSN 165 (169)
T ss_dssp HHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSHTTTTSEEEEEESSSTHH
T ss_pred cccccccccccccCcchhhccccccccccccceeeccCccccccccc--HHHHHHHHHHHhcCCCCCcEEEEeeCCChh
Confidence 123477888888887766653 4569999999999999875 788887776665555678999999999943
No 141
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.59 E-value=6.4e-06 Score=82.64 Aligned_cols=219 Identities=14% Similarity=0.146 Sum_probs=145.3
Q ss_pred cCcccEEEEccccccc--cCCCCcHHHHHHHHH------------hhccC------CCCCEEEEEeeCChHHHHHHHHhc
Q psy10478 129 IPRIVLIAIDEAHCVS--QWGHDFRPSYRCLSE------------LRLPL------PDVPILAVTATATPVVIDDICTSL 188 (451)
Q Consensus 129 l~~l~~vViDEah~~~--~~g~~fr~~~~~l~~------------l~~~~------~~~~~v~lSAT~~~~~~~~i~~~l 188 (451)
|+.+.++|||.||.++ .|.| ....+..+.. ++..+ .=.|.+++|+..+|+...-+.+..
T Consensus 159 LSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~ 237 (442)
T PF06862_consen 159 LSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHC 237 (442)
T ss_pred hheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhC
Confidence 4679999999999876 4543 2222211111 11100 125799999999998765444422
Q ss_pred CC-CCCeEEe-----------cCCCCCceEEEEEecc-----hhHHHH----HHHHHhhccCCCCcEEEEcCChhHHHHH
Q psy10478 189 ML-RDPNIIN-----------TGFDRPNLYLAASVKQ-----DDIMAD----LRKLTNFENQFEGSTIIYCPTKVICEKV 247 (451)
Q Consensus 189 ~l-~~~~~~~-----------~~~~~~~l~~~~~~~~-----~~~~~~----L~~~l~~~~~~~~~~iVF~~t~~~~~~l 247 (451)
.- .....+. ....-+..+..+.... +..++. +...+.. ....+.+|||++|--+=-.+
T Consensus 238 ~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRl 316 (442)
T PF06862_consen 238 QNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRL 316 (442)
T ss_pred cCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHH
Confidence 21 1111111 1111122233222211 222222 2222221 23678899999999999999
Q ss_pred HHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc--cccccccCCccEEEEeCCCCCHHHHHHHhcccCCC
Q psy10478 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA--FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRD 325 (451)
Q Consensus 248 ~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~--~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 325 (451)
-++|++.++....+|-..+..+-.++-..|.+|+.++|+-|.= +=+=..+.+++.||.|++|..+.-|...++-.+..
T Consensus 317 RN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~ 396 (442)
T PF06862_consen 317 RNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDES 396 (442)
T ss_pred HHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999999963 33556677899999999999988777776544443
Q ss_pred C------CCcEEEEEeecccHHHHhhhhcC
Q psy10478 326 G------LSSVCYTFYKTADFTKNNMIFQP 349 (451)
Q Consensus 326 g------~~g~~i~l~~~~d~~~~~~~~~~ 349 (451)
. ..+.|.++|+.-|...++.++..
T Consensus 397 ~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 397 SGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred ccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 3 25789999999999888887765
No 142
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.53 E-value=2.5e-06 Score=93.35 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=105.4
Q ss_pred CCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCce-EEEEE---e-----cchhHHHHHHHHHhhccCCCCcEEEE
Q psy10478 167 VPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNL-YLAAS---V-----KQDDIMADLRKLTNFENQFEGSTIIY 237 (451)
Q Consensus 167 ~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l-~~~~~---~-----~~~~~~~~L~~~l~~~~~~~~~~iVF 237 (451)
.++|++|||++-....++.+.+|+........+++..+- .+.+. . ..+...+.+.+.+......+++++|+
T Consensus 574 ~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVL 653 (820)
T PRK07246 574 CKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVL 653 (820)
T ss_pred CeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 367899999963222237888888654433332222111 11110 0 01222334444432222367899999
Q ss_pred cCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccC--CccEEEEeCCCC-----
Q psy10478 238 CPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP--DVRCVIHYGAPK----- 310 (451)
Q Consensus 238 ~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p--~v~~VI~~~~p~----- 310 (451)
++|.+..+.+++.|....+.+ ...|.-. .+.++++.|++++..||++|..+.+|||+| +...||..++|-
T Consensus 654 FtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~d 730 (820)
T PRK07246 654 FNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPED 730 (820)
T ss_pred ECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCC
Confidence 999999999999997665444 4444222 256689999999889999999999999997 456667666652
Q ss_pred -------------------------CHHHHHHHhcccCCCCC-CcEEEEEeec
Q psy10478 311 -------------------------DLSAYYQEIGRAGRDGL-SSVCYTFYKT 337 (451)
Q Consensus 311 -------------------------s~~~y~Qr~GRagR~g~-~g~~i~l~~~ 337 (451)
-...+.|-+||.=|... .|. ++++++
T Consensus 731 P~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v~ilD~ 782 (820)
T PRK07246 731 PFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-VLILDR 782 (820)
T ss_pred HHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-EEEECC
Confidence 12356799999999865 454 444444
No 143
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.53 E-value=8.1e-08 Score=87.70 Aligned_cols=150 Identities=16% Similarity=0.082 Sum_probs=89.8
Q ss_pred hcccchhhhhhcCCCChhhhcCcCccccC----CCeeEEEeCccccccchhhHhhhhhhhh---hhcccceeccccCCCC
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCCD----NCRQVVYMTPEYVTNNTSFLSRIPRIVL---IAIDEAHCVSQWGHDF 104 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~~----~~~~vl~~tPe~l~~~~~~~~~l~~~~~---~~~de~~~~~~~~~~~ 104 (451)
.+++.++.+.+++|+|......+.+.+.. ++.+++|++|.+.+..+ ....+..+.. +.+...+.... ....
T Consensus 35 ~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 112 (203)
T cd00268 35 SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQ-IAEVARKLGKHTNLKVVVIYGGTS-IDKQ 112 (203)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHH-HHHHHHHHhccCCceEEEEECCCC-HHHH
Confidence 36788888889999987644444444333 35789999999887665 4443333211 00111111000 0011
Q ss_pred cchhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 105 RPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
...+..-..+.+.||+.....+.. +.+++++|+||+|.+.+.+ |...+..+... ..++.+++++|||+++..
T Consensus 113 ~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~--~~~~~~~~~~~--l~~~~~~~~~SAT~~~~~ 188 (203)
T cd00268 113 IRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG--FEDQIREILKL--LPKDRQTLLFSATMPKEV 188 (203)
T ss_pred HHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC--hHHHHHHHHHh--CCcccEEEEEeccCCHHH
Confidence 111222346777888766554432 4678999999999988655 66666555332 224789999999999877
Q ss_pred HHHHHHh
Q psy10478 181 IDDICTS 187 (451)
Q Consensus 181 ~~~i~~~ 187 (451)
...+...
T Consensus 189 ~~~~~~~ 195 (203)
T cd00268 189 RDLARKF 195 (203)
T ss_pred HHHHHHH
Confidence 5544443
No 144
>COG4889 Predicted helicase [General function prediction only]
Probab=98.52 E-value=6.5e-08 Score=100.78 Aligned_cols=95 Identities=15% Similarity=0.271 Sum_probs=78.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHH---------------CCCCeeeecCCCCHHHHHHHHH---HhhcCCceEEEEcccccc
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSR---------------NGIQNRPYHAHISLKQRKEIHG---LFVKDLIKVVVATCAFGM 293 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~---------------~~~~v~~~h~~l~~~~R~~~~~---~f~~g~~~iLVaT~~~~~ 293 (451)
.++|-||.+++....+++.+.. ..+.+..+.|.|...+|...+. .|...+++||-..-.+++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 4678899999998888777653 1244566778899888855544 355678999998999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHhcccCCCC
Q psy10478 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326 (451)
Q Consensus 294 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 326 (451)
|+|+|.++.||.+++-.++.+.+|.+||.-|..
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999974
No 145
>KOG0386|consensus
Probab=98.51 E-value=2.9e-07 Score=97.47 Aligned_cols=122 Identities=13% Similarity=0.135 Sum_probs=104.6
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCC---ceEEEEcccc
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDL---IKVVVATCAF 291 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~---~~iLVaT~~~ 291 (451)
.++..|.+++......+.+++.||.-..--.-+..+|.-.++....+.|....++|-..++.|..-. ...|.+|-+.
T Consensus 710 GKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstrag 789 (1157)
T KOG0386|consen 710 GKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAG 789 (1157)
T ss_pred cHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeeccc
Confidence 4455556666555568899999999988888899999988999999999999999999999998644 3478899999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 292 GMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 292 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
+.|+|+...+.||.||..+++-...|+--||-|-|+...+-++..
T Consensus 790 glglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 790 GLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred ccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 999999999999999999999999999999999998766655543
No 146
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.50 E-value=1.3e-06 Score=92.28 Aligned_cols=286 Identities=15% Similarity=0.155 Sum_probs=160.1
Q ss_pred cchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCC-CCcchhhcccc
Q psy10478 35 KYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGH-DFRPSYRCLSE 113 (451)
Q Consensus 35 ~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~-~~~~~~~~~~~ 113 (451)
..++.+..|+|+|.+-.....+.+.+...++|++|--+-+..+ +...+....+. +..+ ...-.. .... +....
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~s-L~~rf~~~~l~--gFv~-Y~d~~~~~i~~--~~~~r 124 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKS-LAERFKKAGLS--GFVN-YLDSDDYIIDG--RPYDR 124 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHH-HHHHHhhcCCC--ccee-eeccccccccc--cccCe
Confidence 3445666788888776665555556677899999987777655 55555432110 0000 000000 0000 00011
Q ss_pred cccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHH----HhhccCC-CCCEEEEEeeCChHHHHHHHHhc
Q psy10478 114 LRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLS----ELRLPLP-DVPILAVTATATPVVIDDICTSL 188 (451)
Q Consensus 114 l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~----~l~~~~~-~~~~v~lSAT~~~~~~~~i~~~l 188 (451)
+.+...+..-.....+.++++|||||+-.+... -|.+.+++.. .+..... ...+|++-||+.....+.+...-
T Consensus 125 LivqIdSL~R~~~~~l~~yDvVIIDEv~svL~q--L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~R 202 (824)
T PF02399_consen 125 LIVQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQ--LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCR 202 (824)
T ss_pred EEEEehhhhhcccccccccCEEEEehHHHHHHH--HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhC
Confidence 111111111111122456999999999866531 1333332221 1222223 45688999999999887666543
Q ss_pred CCCCCeEEecCCCCCc-----eEEE------------------------------------EEecchhHHHHHHHHHhhc
Q psy10478 189 MLRDPNIINTGFDRPN-----LYLA------------------------------------ASVKQDDIMADLRKLTNFE 227 (451)
Q Consensus 189 ~l~~~~~~~~~~~~~~-----l~~~------------------------------------~~~~~~~~~~~L~~~l~~~ 227 (451)
+-.+-.++......++ ..+. ........+..|..-+
T Consensus 203 p~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L--- 279 (824)
T PF02399_consen 203 PDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARL--- 279 (824)
T ss_pred CCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHH---
Confidence 3333233322111110 0000 0000012223333333
Q ss_pred cCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccE--EEE
Q psy10478 228 NQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC--VIH 305 (451)
Q Consensus 228 ~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~--VI~ 305 (451)
..|+++-||+.|...++.+++.....+.++..++|.-+.. .+ +.| ++.+|++=|++++.|+++.+..+ |.-
T Consensus 280 -~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~ 352 (824)
T PF02399_consen 280 -NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ESW--KKYDVVIYTPVITVGLSFEEKHFDSMFA 352 (824)
T ss_pred -hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-ccc--cceeEEEEeceEEEEeccchhhceEEEE
Confidence 2778888999999999999999999988999998876655 22 223 67899999999999999975533 332
Q ss_pred eCCC----CCHHHHHHHhcccCCCCCCcEEEEEeeccc
Q psy10478 306 YGAP----KDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339 (451)
Q Consensus 306 ~~~p----~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 339 (451)
|=-| .+..+.+|++||.-.-. ..+.+++++...
T Consensus 353 yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~~ 389 (824)
T PF02399_consen 353 YVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDASG 389 (824)
T ss_pred EecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEeccc
Confidence 3112 35677999999985444 566777777653
No 147
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.49 E-value=4.6e-06 Score=92.85 Aligned_cols=171 Identities=16% Similarity=0.156 Sum_probs=107.8
Q ss_pred CCEEEEEeeCChHH-HHHHHHhcCCCCC--eEEe--cCCCCC-ceEEEEEe-c-------chhHHHHHHHHHhhc-cCCC
Q psy10478 167 VPILAVTATATPVV-IDDICTSLMLRDP--NIIN--TGFDRP-NLYLAASV-K-------QDDIMADLRKLTNFE-NQFE 231 (451)
Q Consensus 167 ~~~v~lSAT~~~~~-~~~i~~~l~l~~~--~~~~--~~~~~~-~l~~~~~~-~-------~~~~~~~L~~~l~~~-~~~~ 231 (451)
.++|++|||++... .+.+.+.+|+.+. .... .+++.. +..+.+.. . .+...+.+.+.+... ...+
T Consensus 673 ~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~~~ 752 (928)
T PRK08074 673 KSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKATK 752 (928)
T ss_pred CcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 35789999997532 3445678888642 1222 223321 22121111 0 012223344333222 1256
Q ss_pred CcEEEEcCChhHHHHHHHHHHHCCC--CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCc--cEEEEeC
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSRNGI--QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDV--RCVIHYG 307 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~~~~--~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v--~~VI~~~ 307 (451)
++++||.+|.+..+.+++.|..... ....+.-+++...|.++++.|++++-.||++|..+.+|||+|+- +.||..+
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~k 832 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVR 832 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEec
Confidence 7999999999999999999986532 12223334444568899999999988999999999999999964 7888877
Q ss_pred CCC------------------------------CHHHHHHHhcccCCCCCCcEEEEEeec
Q psy10478 308 APK------------------------------DLSAYYQEIGRAGRDGLSSVCYTFYKT 337 (451)
Q Consensus 308 ~p~------------------------------s~~~y~Qr~GRagR~g~~g~~i~l~~~ 337 (451)
+|- ....+.|-+||.=|....--++++.++
T Consensus 833 LPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~ 892 (928)
T PRK08074 833 LPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 892 (928)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecC
Confidence 663 123447889999998754334444444
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.43 E-value=5.6e-06 Score=89.34 Aligned_cols=167 Identities=17% Similarity=0.176 Sum_probs=103.2
Q ss_pred CCEEEEEeeCChH-HHHHHHHhcCCCC---CeEEec--CCCCCc-eEEEEE-----e-cchhHHHHHHHHHhhccCCCCc
Q psy10478 167 VPILAVTATATPV-VIDDICTSLMLRD---PNIINT--GFDRPN-LYLAAS-----V-KQDDIMADLRKLTNFENQFEGS 233 (451)
Q Consensus 167 ~~~v~lSAT~~~~-~~~~i~~~l~l~~---~~~~~~--~~~~~~-l~~~~~-----~-~~~~~~~~L~~~l~~~~~~~~~ 233 (451)
..+|++|||+++. ..+.+.+.+|+.+ ...+.. +++..+ ..+.+. . ......+.+.+.+......++.
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~~~gg 536 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLEKHKG 536 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC
Confidence 4578999999863 3456678889864 333332 222211 111111 0 1122233344433322224455
Q ss_pred EEEEcCChhHHHHHHHHHHHC-CCCeeeecCCCCHHHHHHHHHHhh----cCCceEEEEccccccccccCC--ccEEEEe
Q psy10478 234 TIIYCPTKVICEKVCDVLSRN-GIQNRPYHAHISLKQRKEIHGLFV----KDLIKVVVATCAFGMGIDKPD--VRCVIHY 306 (451)
Q Consensus 234 ~iVF~~t~~~~~~l~~~L~~~-~~~v~~~h~~l~~~~R~~~~~~f~----~g~~~iLVaT~~~~~GiD~p~--v~~VI~~ 306 (451)
++||++|.+..+.++..|... +.. ...+|.. .|..+++.|+ .|+..||++|..+.+|||+|+ ++.||..
T Consensus 537 ~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~ 612 (697)
T PRK11747 537 SLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIIT 612 (697)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEE
Confidence 899999999999999998753 333 3445542 4677776666 467789999999999999986 6889988
Q ss_pred CCCC----C--------------------------HHHHHHHhcccCCCCCCcEEEEEeec
Q psy10478 307 GAPK----D--------------------------LSAYYQEIGRAGRDGLSSVCYTFYKT 337 (451)
Q Consensus 307 ~~p~----s--------------------------~~~y~Qr~GRagR~g~~g~~i~l~~~ 337 (451)
++|. + ...+.|-+||.=|....--.+++.++
T Consensus 613 kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 613 KIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcc
Confidence 8763 1 12346888999887644223444443
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.30 E-value=1.1e-05 Score=87.00 Aligned_cols=165 Identities=18% Similarity=0.222 Sum_probs=103.3
Q ss_pred CCEEEEEeeCChHH-HHHHHHhcCCCCCe-EEec-C-CCCCce-EEEEEe--cc-h--hHHHHHHHHHhhc-cCCCCcEE
Q psy10478 167 VPILAVTATATPVV-IDDICTSLMLRDPN-IINT-G-FDRPNL-YLAASV--KQ-D--DIMADLRKLTNFE-NQFEGSTI 235 (451)
Q Consensus 167 ~~~v~lSAT~~~~~-~~~i~~~l~l~~~~-~~~~-~-~~~~~l-~~~~~~--~~-~--~~~~~L~~~l~~~-~~~~~~~i 235 (451)
..+|++|||+++.. ...+....++.... .+.. + ++.... ...+.. .. . .....+...+... ...+++++
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 483 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPGGVL 483 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCCCEE
Confidence 56899999997754 34456666555444 1211 1 111111 111110 01 1 2333333322221 12556999
Q ss_pred EEcCChhHHHHHHHHHHHCCCC-eeeecCCCCHHHHHHHHHHhhcCCc-eEEEEccccccccccCCc--cEEEEeCCCC-
Q psy10478 236 IYCPTKVICEKVCDVLSRNGIQ-NRPYHAHISLKQRKEIHGLFVKDLI-KVVVATCAFGMGIDKPDV--RCVIHYGAPK- 310 (451)
Q Consensus 236 VF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~~~~R~~~~~~f~~g~~-~iLVaT~~~~~GiD~p~v--~~VI~~~~p~- 310 (451)
||++|....+.+++.+...... ....+|..+ +...++.|..+.- .++|+|..+.+|||+|+- +.||..+.|.
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred EEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCC
Confidence 9999999999999999977542 445555544 4477888877655 899999999999999865 7788888764
Q ss_pred -----------------------------CHHHHHHHhcccCCCCCC-cEEEEE
Q psy10478 311 -----------------------------DLSAYYQEIGRAGRDGLS-SVCYTF 334 (451)
Q Consensus 311 -----------------------------s~~~y~Qr~GRagR~g~~-g~~i~l 334 (451)
.+..+.|.+||+=|.-.. |..+++
T Consensus 561 ~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 561 NPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 245668999999996543 444444
No 150
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.29 E-value=5.4e-06 Score=88.16 Aligned_cols=164 Identities=17% Similarity=0.169 Sum_probs=113.6
Q ss_pred EEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEE----ecchhHHHHHHHHHhhccCCCCcEEEEcCChhHH
Q psy10478 169 ILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAAS----VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVIC 244 (451)
Q Consensus 169 ~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~ 244 (451)
+.+||+|+..+..+ +.. +-.-.++..+.++|.+..... .....++.++...+......+.|+||-+.+++..
T Consensus 367 l~gmTGTa~te~~E-F~~---iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~S 442 (822)
T COG0653 367 LAGMTGTADTEEEE-FDV---IYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKS 442 (822)
T ss_pred hcCCCCcchhhhhh-hhh---ccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecc
Confidence 45777777655433 222 234456677777877643322 1225677778887777777999999999999999
Q ss_pred HHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCc-eEEEEccccccccccC---Ccc--------EEEEeCCCCCH
Q psy10478 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLI-KVVVATCAFGMGIDKP---DVR--------CVIHYGAPKDL 312 (451)
Q Consensus 245 ~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~-~iLVaT~~~~~GiD~p---~v~--------~VI~~~~p~s~ 312 (451)
+.+.+.|.+.|++...+.+.-...+=+.+-. .|.. -|-|||+++|+|-|+. +.. +||-...-.|.
T Consensus 443 E~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESR 519 (822)
T COG0653 443 ELLSKLLRKAGIPHNVLNAKNHAREAEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESR 519 (822)
T ss_pred hhHHHHHHhcCCCceeeccccHHHHHHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhh
Confidence 9999999999999877777655333322222 3433 4889999999999984 221 34444444454
Q ss_pred HHHHHHhcccCCCCCCcEEEEEeeccc
Q psy10478 313 SAYYQEIGRAGRDGLSSVCYTFYKTAD 339 (451)
Q Consensus 313 ~~y~Qr~GRagR~g~~g~~i~l~~~~d 339 (451)
.-=-|-.||+||.|.+|.+..|++-+|
T Consensus 520 RIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 520 RIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHHHHhhcccccCCCcchhhhhhhhHH
Confidence 444699999999999999887776554
No 151
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.22 E-value=4.3e-06 Score=73.91 Aligned_cols=105 Identities=26% Similarity=0.323 Sum_probs=72.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCC--CeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc--ccccccccCC--ccEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGI--QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC--AFGMGIDKPD--VRCV 303 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~--~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~--~~~~GiD~p~--v~~V 303 (451)
.++.++||++|....+.+.+.+..... ....+.. +..++..+++.|++++-.||+|+. .+.+|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 568999999999999999999987632 2233333 355788999999999999999999 9999999996 6789
Q ss_pred EEeCCCC----C--------------------------HHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 304 IHYGAPK----D--------------------------LSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 304 I~~~~p~----s--------------------------~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
|..++|. + .....|.+||+-|....--++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 9999884 1 1233688999999876533444444
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.16 E-value=6.2e-05 Score=81.76 Aligned_cols=168 Identities=17% Similarity=0.182 Sum_probs=104.9
Q ss_pred CCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCC--CCCceEEEE-Ee-------------c-chhHHHHHHHHHhhc-c
Q psy10478 167 VPILAVTATATPVVIDDICTSLMLRDPNIINTGF--DRPNLYLAA-SV-------------K-QDDIMADLRKLTNFE-N 228 (451)
Q Consensus 167 ~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~--~~~~l~~~~-~~-------------~-~~~~~~~L~~~l~~~-~ 228 (451)
..++++|||++|.. .+...||+..+.....+. ...++...+ .. . .......+...+... .
T Consensus 442 ~svil~SgTL~p~~--~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~ 519 (705)
T TIGR00604 442 RSVILASGTLSPLD--AFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSK 519 (705)
T ss_pred CEEEEecccCCcHH--HHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhh
Confidence 45899999998854 557778876544332211 111221111 11 0 022334444444332 2
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHCCC------CeeeecCCCCHHHHHHHHHHhhc----CCceEEEEc--cccccccc
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRNGI------QNRPYHAHISLKQRKEIHGLFVK----DLIKVVVAT--CAFGMGID 296 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~v~~~h~~l~~~~R~~~~~~f~~----g~~~iLVaT--~~~~~GiD 296 (451)
..++.++||.+|-...+.+.+.+.+.+. .-..+.-+-...++..+++.|.. |+-.||+|+ ..+++|||
T Consensus 520 ~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 520 IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 2568899999999999999998876532 01122222222578889999964 456799999 88999999
Q ss_pred cCC--ccEEEEeCCCC-CH------------------------------HHHHHHhcccCCCCCCcEEEEEee
Q psy10478 297 KPD--VRCVIHYGAPK-DL------------------------------SAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 297 ~p~--v~~VI~~~~p~-s~------------------------------~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
+++ .+.||..++|. ++ ....|.+||+=|....--++++++
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD 672 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLD 672 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 987 58999999886 10 123588899999865433445544
No 153
>KOG0388|consensus
Probab=98.02 E-value=2.3e-05 Score=80.65 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCce-EEEEcccccc
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIK-VVVATCAFGM 293 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~-iLVaT~~~~~ 293 (451)
.++..|..++......+.++|+|..--+..+-+.++|.-.++....+.|+....+|..+..+|+..++- .|.+|-+.|.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 344445555555555889999999999999999999999999999999999999999999999986554 6789999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEE
Q psy10478 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVC 331 (451)
Q Consensus 294 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 331 (451)
|||+...+.||.||..+++..-.|.+.||-|.|+.-.+
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdv 1145 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDV 1145 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccce
Confidence 99999999999999999999999999999999976443
No 154
>KOG0391|consensus
Probab=98.02 E-value=5.9e-05 Score=81.43 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCC--ceEEEEcccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDL--IKVVVATCAF 291 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~--~~iLVaT~~~ 291 (451)
-.+++.|.-++......+.++|||+.-.+..+-|..+|.-+|+....+.|..+-++|+...++|..+. ...|.+|-..
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 35666677677666668999999999999999999999999999999999999999999999999764 3467799999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcE--EEEEeec
Q psy10478 292 GMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSV--CYTFYKT 337 (451)
Q Consensus 292 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~--~i~l~~~ 337 (451)
+.|||+-..+.||.||..+++..-.|.--||-|-|+.-. .+-|++.
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 999999999999999999987766666666666665433 3444443
No 155
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.99 E-value=0.0002 Score=75.57 Aligned_cols=157 Identities=15% Similarity=0.058 Sum_probs=105.9
Q ss_pred CCEEEEEeeCChHH------HHHHHHhcCCCCCeEE-ecCCC----CCc--eEEEEEe------cch-------------
Q psy10478 167 VPILAVTATATPVV------IDDICTSLMLRDPNII-NTGFD----RPN--LYLAASV------KQD------------- 214 (451)
Q Consensus 167 ~~~v~lSAT~~~~~------~~~i~~~l~l~~~~~~-~~~~~----~~~--l~~~~~~------~~~------------- 214 (451)
.++|+.|||+.... .+.+.+.+|+...... ..+++ +.. +-|.... ...
T Consensus 372 ~~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~ 451 (636)
T TIGR03117 372 HGAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAE 451 (636)
T ss_pred CeEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcch
Confidence 36899999997644 5788899998654332 23445 333 2222210 001
Q ss_pred -----hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc----CCceEE
Q psy10478 215 -----DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK----DLIKVV 285 (451)
Q Consensus 215 -----~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~----g~~~iL 285 (451)
...+.+..++.. .++.++|.+.|....+.+++.|...--....+.|..+ .+...++.|++ |...||
T Consensus 452 ~~~~~~~~~~~~~~~~~---~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL 526 (636)
T TIGR03117 452 RTWLENVSLSTAAILRK---AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVL 526 (636)
T ss_pred hhHHHHHHHHHHHHHHH---cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEE
Confidence 133444555544 6789999999999999999999764223445566543 35667888887 478999
Q ss_pred EEcccccccccc----------CCccEEEEeCCCC-------------------------CHHHHHHHhcccCCCCCC
Q psy10478 286 VATCAFGMGIDK----------PDVRCVIHYGAPK-------------------------DLSAYYQEIGRAGRDGLS 328 (451)
Q Consensus 286 VaT~~~~~GiD~----------p~v~~VI~~~~p~-------------------------s~~~y~Qr~GRagR~g~~ 328 (451)
++|+.|-+|||+ ..++.||...+|- ....+.|-+||.=|....
T Consensus 527 ~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D 604 (636)
T TIGR03117 527 IAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDM 604 (636)
T ss_pred EeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCC
Confidence 999999999999 2478898877662 134557888998887653
No 156
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.97 E-value=5e-05 Score=84.64 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=104.2
Q ss_pred hHHHHHHHHH-hhccCCCC--cEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC--CceEEEEcc
Q psy10478 215 DIMADLRKLT-NFENQFEG--STIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD--LIKVVVATC 289 (451)
Q Consensus 215 ~~~~~L~~~l-~~~~~~~~--~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g--~~~iLVaT~ 289 (451)
.+...+.+++ ......+. +++||+......+-+...|...++....++|+++...|...++.|.++ ..-.+++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666666 44444666 999999999999999999999998899999999999999999999986 444777788
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEE
Q psy10478 290 AFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334 (451)
Q Consensus 290 ~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l 334 (451)
+.+.|+|.-..++||++|..+++....|...|+-|.|+...+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999977665544
No 157
>KOG0392|consensus
Probab=97.92 E-value=4.3e-05 Score=82.98 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=89.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCC---CCeeeecCCCCHHHHHHHHHHhhcC-CceEEE-EccccccccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNG---IQNRPYHAHISLKQRKEIHGLFVKD-LIKVVV-ATCAFGMGIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~---~~v~~~h~~l~~~~R~~~~~~f~~g-~~~iLV-aT~~~~~GiD~p~v~~VI 304 (451)
.+.+++|||.-+...+-+.+-|.+.- +....+.|+.++.+|.++.++|.++ .++||+ +|.+.|-|+|+.+.+.||
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVV 1418 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVV 1418 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEE
Confidence 35689999999999999998887653 3344789999999999999999998 778665 778999999999999999
Q ss_pred EeCCCCCHHHHHHHhcccCCCCCCcEE
Q psy10478 305 HYGAPKDLSAYYQEIGRAGRDGLSSVC 331 (451)
Q Consensus 305 ~~~~p~s~~~y~Qr~GRagR~g~~g~~ 331 (451)
.++=.+++..=+|.+-||-|-|++-.+
T Consensus 1419 FvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1419 FVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred EEecCCCchhhHHHHHHHHhhcCceee
Confidence 999999999899999999999976543
No 158
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.79 E-value=4e-06 Score=70.65 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=57.6
Q ss_pred cCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccC------CCCcch--hhccccc
Q psy10478 43 GSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWG------HDFRPS--YRCLSEL 114 (451)
Q Consensus 43 ~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~------~~~~~~--~~~~~~l 114 (451)
++|+|-.-.....++..+.+.++|++.|.+.+... ..+.|++..+ ...+.+- +..-.. +.....+
T Consensus 14 GaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~e-m~~aL~~~~~------~~~t~~~~~~~~g~~~i~vMc~at~~~~ 86 (148)
T PF07652_consen 14 GAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEE-MYEALKGLPV------RFHTNARMRTHFGSSIIDVMCHATYGHF 86 (148)
T ss_dssp TSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHH-HHHHTTTSSE------EEESTTSS----SSSSEEEEEHHHHHHH
T ss_pred CCCCcccccHHHHHHHHHccCeEEEecccHHHHHH-HHHHHhcCCc------ccCceeeeccccCCCcccccccHHHHHH
Confidence 56777654444445545556899999999998766 5555555411 1111111 000000 1111111
Q ss_pred ccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 115 RLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 115 ~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
... | .++.++++||+||||....+.-.++..+..+.. .....+|+||||+|...
T Consensus 87 ~~~-p-------~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~----~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 87 LLN-P-------CRLKNYDVIIMDECHFTDPTSIAARGYLRELAE----SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp HHT-S-------SCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH----TTS-EEEEEESS-TT--
T ss_pred hcC-c-------ccccCccEEEEeccccCCHHHHhhheeHHHhhh----ccCeeEEEEeCCCCCCC
Confidence 111 1 224689999999999764332223333333222 24567999999998754
No 159
>KOG0921|consensus
Probab=97.66 E-value=4.8e-05 Score=80.19 Aligned_cols=114 Identities=20% Similarity=0.362 Sum_probs=94.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC 302 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~ 302 (451)
-.+.++||.+--...-.|..+|... .+.+...|+.+...+..++.+....|..++++.|.+....+.+.++.+
T Consensus 642 i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 642 IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred CccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeE
Confidence 5678999999999999999988764 356888999999999999999999999999999999999999999888
Q ss_pred EEEeCCCC------------------CHHHHHHHhcccCCCCCCcEEEEEeecccHHHHh
Q psy10478 303 VIHYGAPK------------------DLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNN 344 (451)
Q Consensus 303 VI~~~~p~------------------s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~ 344 (451)
||..+.-+ |.....|+.||+||. ++|.|..+.+..-+....
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF~~l~ 780 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARFEALE 780 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHHHHHHH
Confidence 88654322 566789999999997 478888887765555444
No 160
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.65 E-value=7.7e-05 Score=66.76 Aligned_cols=146 Identities=17% Similarity=0.213 Sum_probs=80.2
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCC-CeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccC-CC----Ccch
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDN-CRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWG-HD----FRPS 107 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~-~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~-~~----~~~~ 107 (451)
...++.+..++|+|..-...+.+.+..+ ..+++|++|...+..+ +...+....... ..... ..++ .. +...
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~ 101 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQ-WAEELKKLGPSL-GLKVV-GLYGGDSKREQLRKL 101 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHH-HHHHHHHHhccC-CeEEE-EEeCCcchHHHHHHH
Confidence 5566677788898886555555554443 4579999997766554 444443321000 00000 0111 00 0101
Q ss_pred hhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHH
Q psy10478 108 YRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDD 183 (451)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~ 183 (451)
......+...+++........ ..+++++|+||+|.+.... +...+..+.... .+..+++++|||++......
T Consensus 102 ~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~--~~~~~~v~~saT~~~~~~~~ 177 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGG--FGDQLEKLLKLL--PKNVQLLLLSATPPEEIENL 177 (201)
T ss_pred hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCC--cHHHHHHHHHhC--CccceEEEEecCCchhHHHH
Confidence 111114445554444333322 2468899999999998642 556665553322 46788999999998766554
Q ss_pred HHH
Q psy10478 184 ICT 186 (451)
Q Consensus 184 i~~ 186 (451)
...
T Consensus 178 ~~~ 180 (201)
T smart00487 178 LEL 180 (201)
T ss_pred HHH
Confidence 333
No 161
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.51 E-value=6.2e-05 Score=63.24 Aligned_cols=134 Identities=21% Similarity=0.153 Sum_probs=69.9
Q ss_pred hhhhhhcCCCChhhhcCcCccccC-CCeeEEEeCccccccchhhHhhhhhhhh--hhcccceeccccCCCCcchhhcccc
Q psy10478 37 LLNHFKGSSVTMAESQVPPDKCCD-NCRQVVYMTPEYVTNNTSFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSE 113 (451)
Q Consensus 37 i~a~~~~s~~~~~e~~~~~~~~~~-~~~~vl~~tPe~l~~~~~~~~~l~~~~~--~~~de~~~~~~~~~~~~~~~~~~~~ 113 (451)
++..-.++|+|..-.....+.... ...+++|++|...+..+ +...+....- ..+...+. .....+.......-..
T Consensus 4 ~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (144)
T cd00046 4 LLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQ-VAERLKELFGEGIKVGYLIG-GTSIKQQEKLLSGKTD 81 (144)
T ss_pred EEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHH-HHHHHHHHhhCCcEEEEEec-CcchhHHHHHhcCCCC
Confidence 344556777775443333333322 44689999999988766 4444443311 11111110 0000100011123345
Q ss_pred cccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeC
Q psy10478 114 LRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATA 176 (451)
Q Consensus 114 l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~ 176 (451)
+...+++........ ...++++||||+|.+.... +.... ........+..+++++|||+
T Consensus 82 i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 82 IVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred EEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 555666655444432 2479999999999987533 22221 11223345678899999996
No 162
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00022 Score=73.99 Aligned_cols=41 Identities=66% Similarity=1.228 Sum_probs=37.8
Q ss_pred hhhcccceeccccCCCCcchhhcccccccCCCCchhhhccc
Q psy10478 88 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSR 128 (451)
Q Consensus 88 ~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 128 (451)
++++|||||.++|||+|||+|+.+..+...+|+.|++.++.
T Consensus 134 l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTA 174 (590)
T COG0514 134 LVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTA 174 (590)
T ss_pred eEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeC
Confidence 46899999999999999999999999999999999888854
No 163
>KOG0353|consensus
Probab=97.42 E-value=2e-05 Score=75.41 Aligned_cols=58 Identities=43% Similarity=0.748 Sum_probs=50.4
Q ss_pred hhhhhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEEccccccc
Q psy10478 85 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVS 144 (451)
Q Consensus 85 ~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~ 144 (451)
.+.++++||+||++||||+|+++|+.+..+.+++|+.|++.+.. .-.--|+|.+..++
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iiglta--tatn~vl~d~k~il 272 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTA--TATNHVLDDAKDIL 272 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeeh--hhhcchhhHHHHHH
Confidence 34568999999999999999999999999999999999999987 55556788887665
No 164
>KOG1015|consensus
Probab=97.25 E-value=0.0008 Score=71.70 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=97.5
Q ss_pred HHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHH----------------------CCCCeeeecCCCCHHHHHHHHHH
Q psy10478 219 DLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR----------------------NGIQNRPYHAHISLKQRKEIHGL 276 (451)
Q Consensus 219 ~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~----------------------~~~~v~~~h~~l~~~~R~~~~~~ 276 (451)
.|.++++....-|.+.|||..|....+-+..+|.- .|.....+.|.....+|+...+.
T Consensus 1130 LLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~ 1209 (1567)
T KOG1015|consen 1130 LLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEE 1209 (1567)
T ss_pred hHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHH
Confidence 35556655555789999999999888888888762 24567788999999999999999
Q ss_pred hhcC---Cce-EEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEE
Q psy10478 277 FVKD---LIK-VVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334 (451)
Q Consensus 277 f~~g---~~~-iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l 334 (451)
|.+- +.+ .||+|-+.+.|||+-..+.||.||..+++.--.|-+=|+-|.|+..-+++|
T Consensus 1210 FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1210 FNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred hcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9864 222 899999999999999999999999999999999999999999987766665
No 165
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.19 E-value=0.0044 Score=52.94 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=53.5
Q ss_pred eecCCCCHHHHHHHHHHhhcCC-ceEEEEccccccccccCCc--cEEEEeCCCC----C---------------------
Q psy10478 260 PYHAHISLKQRKEIHGLFVKDL-IKVVVATCAFGMGIDKPDV--RCVIHYGAPK----D--------------------- 311 (451)
Q Consensus 260 ~~h~~l~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~p~v--~~VI~~~~p~----s--------------------- 311 (451)
.+.-+.+..+...+++.|.+.. ..||++|..+.+|||+|+- +.||..++|. +
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3444455556788888998754 3799999889999999974 6888888774 1
Q ss_pred ------HHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 312 ------LSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 312 ------~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
.....|.+||+=|....--++++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1234688899988765433444443
No 166
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.15 E-value=0.00028 Score=62.71 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=32.5
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhh
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRI 83 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l 83 (451)
....+..+.+|+|+|.--...+.+... +++|++|..-+..+ +...+
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q-~~~~~ 70 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQ-WYDEF 70 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHH-HHHHH
T ss_pred CCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHH-HHHHH
Confidence 566777889999999775543333332 99999999877666 55555
No 167
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.10 E-value=0.0042 Score=53.14 Aligned_cols=92 Identities=26% Similarity=0.315 Sum_probs=57.7
Q ss_pred HHHHHHHHHCCC---CeeeecCCCCHHHHHHHHHHhhcCCc---eEEEEccc--cccccccCC--ccEEEEeCCCC----
Q psy10478 245 EKVCDVLSRNGI---QNRPYHAHISLKQRKEIHGLFVKDLI---KVVVATCA--FGMGIDKPD--VRCVIHYGAPK---- 310 (451)
Q Consensus 245 ~~l~~~L~~~~~---~v~~~h~~l~~~~R~~~~~~f~~g~~---~iLVaT~~--~~~GiD~p~--v~~VI~~~~p~---- 310 (451)
+.+++.+.+.+. ....+.-+....+..++++.|++..- .||+++.- +++|||+|+ .+.||..++|.
T Consensus 5 ~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~ 84 (142)
T smart00491 5 EQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPD 84 (142)
T ss_pred HHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCC
Confidence 445555554432 12223322333345678888886543 69998887 999999997 47899888774
Q ss_pred C---------------------------HHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 311 D---------------------------LSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 311 s---------------------------~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
+ .....|.+||+=|....--++++++
T Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 85 SPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 1233688899999865433444444
No 168
>KOG0352|consensus
Probab=96.88 E-value=0.00019 Score=70.07 Aligned_cols=43 Identities=56% Similarity=1.008 Sum_probs=38.3
Q ss_pred hhhhhcccceeccccCCCCcchhhcccccccCCCCchhhhccc
Q psy10478 86 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSR 128 (451)
Q Consensus 86 ~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 128 (451)
+..++|||+||.+||||||+|+|..+..++...|+.+.+.|..
T Consensus 142 L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTA 184 (641)
T KOG0352|consen 142 LRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTA 184 (641)
T ss_pred eeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeec
Confidence 4568999999999999999999999999999999988776643
No 169
>KOG1002|consensus
Probab=96.82 E-value=0.0075 Score=60.31 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=93.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC-Cce-EEEEccccccccccCCccEEEEeC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD-LIK-VVVATCAFGMGIDKPDVRCVIHYG 307 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g-~~~-iLVaT~~~~~GiD~p~v~~VI~~~ 307 (451)
..-+.|||..--...+-+.-.|.+.|+.+..+-|+|++..|...++.|+++ .++ .||+-.+.|..+|+...+.|+.+|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 456789999999999999999999999999999999999999999999986 344 567778999999999999999999
Q ss_pred CCCCHHHHHHHhcccCCCCC--CcEEEEEeec
Q psy10478 308 APKDLSAYYQEIGRAGRDGL--SSVCYTFYKT 337 (451)
Q Consensus 308 ~p~s~~~y~Qr~GRagR~g~--~g~~i~l~~~ 337 (451)
+=++++--+|...|.-|-|+ |-.++.|+-.
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 99999999999999888885 4455555443
No 170
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.57 E-value=0.02 Score=62.57 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=38.8
Q ss_pred EEccccccccccCC----------------------c----------cEEEEeCCCCCHHHHHH--HhcccCCCCCCcEE
Q psy10478 286 VATCAFGMGIDKPD----------------------V----------RCVIHYGAPKDLSAYYQ--EIGRAGRDGLSSVC 331 (451)
Q Consensus 286 VaT~~~~~GiD~p~----------------------v----------~~VI~~~~p~s~~~y~Q--r~GRagR~g~~g~~ 331 (451)
|+|+....|+|+|. + ++||.|++-.+..--+| ++||.|| ++.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r---~~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLR---PLRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCC---CcEE
Confidence 77888889999997 5 89999998777666666 6666555 4667
Q ss_pred EEEeecccHH
Q psy10478 332 YTFYKTADFT 341 (451)
Q Consensus 332 i~l~~~~d~~ 341 (451)
++++...-.+
T Consensus 508 yfL~y~~S~E 517 (814)
T TIGR00596 508 YFLYYGGSIE 517 (814)
T ss_pred EEEEECCcHH
Confidence 7766554443
No 171
>KOG2340|consensus
Probab=96.38 E-value=0.024 Score=57.28 Aligned_cols=118 Identities=17% Similarity=0.170 Sum_probs=93.9
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc--cccccccCCccEEEEeCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA--FGMGIDKPDVRCVIHYGA 308 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~--~~~GiD~p~v~~VI~~~~ 308 (451)
...+|||.++--.=-.+-.++++.++....+|--.+...-.++-+-|-.|+..+|+-|.- +=+-.++.+|+.||.|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 345799999999989999999999888777777777777777788899999999999964 446788999999999999
Q ss_pred CCCHH---HHHHHhcccCCCC----CCcEEEEEeecccHHHHhhhhc
Q psy10478 309 PKDLS---AYYQEIGRAGRDG----LSSVCYTFYKTADFTKNNMIFQ 348 (451)
Q Consensus 309 p~s~~---~y~Qr~GRagR~g----~~g~~i~l~~~~d~~~~~~~~~ 348 (451)
|..+. +++.+.+|+.-.| ....|.++|+.-|...+..++.
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 99865 4467777764333 3467889999888777766554
No 172
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.05 E-value=0.031 Score=58.32 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=65.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~ 307 (451)
.++++||.++++.-+.++++.|++. +..+..+||+++..+|.++.....+|+.+|+|+|...-. ..++++.+||.-+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 6789999999999999999999875 778999999999999999999999999999999964332 4567888887544
No 173
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.00 E-value=0.04 Score=59.69 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=66.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~ 307 (451)
.++++||.++++..+.++.+.|++. |..+..+||+++..+|.+......+|+.+|+|+|.... -..+.++.+||.-+
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 5789999999999999999999874 78899999999999999999999999999999997432 25567888888654
No 174
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.93 E-value=0.02 Score=54.23 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=49.2
Q ss_pred HHHHHhhcCCceEEEEccccccccccCC--------ccEEEEeCCCCCHHHHHHHhcccCCCCCC
Q psy10478 272 EIHGLFVKDLIKVVVATCAFGMGIDKPD--------VRCVIHYGAPKDLSAYYQEIGRAGRDGLS 328 (451)
Q Consensus 272 ~~~~~f~~g~~~iLVaT~~~~~GiD~p~--------v~~VI~~~~p~s~~~y~Qr~GRagR~g~~ 328 (451)
...+.|.+|+.+|+|-|++.+.||.+.. -++-|.+.+|+|....+|..||+-|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 4456899999999999999999998763 24557789999999999999999999974
No 175
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.89 E-value=0.026 Score=61.24 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=66.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-FGMGIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiD~p~v~~VI 304 (451)
.+.+++|.++|+.-|.+.++.+++. |+.+..+||+++..+|.++++.+.+|+.+|+|+|.. +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 6789999999999999888877654 688999999999999999999999999999999974 45567888999887
Q ss_pred E
Q psy10478 305 H 305 (451)
Q Consensus 305 ~ 305 (451)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 176
>KOG4439|consensus
Probab=95.85 E-value=0.066 Score=56.03 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=88.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc--CCceEE-EEccccccccccCCccEEEEe
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK--DLIKVV-VATCAFGMGIDKPDVRCVIHY 306 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~--g~~~iL-VaT~~~~~GiD~p~v~~VI~~ 306 (451)
...+++|...-.....-+...|.+.|.....+||.....+|+.+++.|.. |..+|+ ++=.+.|.|+|+-..+++|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 55666666666666667778888889999999999999999999999984 445654 456788999999999999999
Q ss_pred CCCCCHHHHHHHhcccCCCCCCcEEEEE
Q psy10478 307 GAPKDLSAYYQEIGRAGRDGLSSVCYTF 334 (451)
Q Consensus 307 ~~p~s~~~y~Qr~GRagR~g~~g~~i~l 334 (451)
|+.++++.=-|..-|.-|.|+...+++.
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999999987766654
No 177
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.75 E-value=0.037 Score=59.34 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC-C-CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN-G-IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG 292 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~-~-~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~ 292 (451)
.+.+....++......++++||.++.+..+.++.+.|++. | ..+..+|+++++.+|.+......+|+.+|+|+|-.+
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA- 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA- 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-
Confidence 3444455555555557899999999999999999999876 4 679999999999999999999999999999999542
Q ss_pred cccccCCccEEEEeC
Q psy10478 293 MGIDKPDVRCVIHYG 307 (451)
Q Consensus 293 ~GiD~p~v~~VI~~~ 307 (451)
.=.-+++...||..+
T Consensus 251 vFaP~~~LgLIIvdE 265 (665)
T PRK14873 251 VFAPVEDLGLVAIWD 265 (665)
T ss_pred EEeccCCCCEEEEEc
Confidence 223445666666433
No 178
>KOG0351|consensus
Probab=95.75 E-value=0.0017 Score=71.35 Aligned_cols=43 Identities=60% Similarity=1.154 Sum_probs=38.9
Q ss_pred hhhhhcccceeccccCCCCcchhhcccccccCCCCchhhhccc
Q psy10478 86 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSR 128 (451)
Q Consensus 86 ~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 128 (451)
+.+.++|||||.++|||+||++|+.+..++..+|+.|++.++.
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTA 428 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTA 428 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeeh
Confidence 4568899999999999999999999999999999988887744
No 179
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.40 E-value=0.052 Score=59.18 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=58.9
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC----C-CCeee-ecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN----G-IQNRP-YHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~----~-~~v~~-~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
+..+..+.-.. .++++++.++|..-+.++++.|.+. + ..+.. |||.|+..++++++++|.+|..+|+|+|+.
T Consensus 113 fg~~~sl~~a~--kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 113 FGLLMSLYLAK--KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHh--cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 44444443333 7799999999999999999988865 2 33333 999999999999999999999999999976
Q ss_pred cc
Q psy10478 291 FG 292 (451)
Q Consensus 291 ~~ 292 (451)
+-
T Consensus 191 FL 192 (1187)
T COG1110 191 FL 192 (1187)
T ss_pred HH
Confidence 43
No 180
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.20 E-value=0.09 Score=56.58 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=65.8
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc-cccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG-MGIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~-~GiD~p~v~~VI 304 (451)
.+.+++|.++|+.-+++.++.+++. |+.+..+||+++..+|..+++...+|+.+|+|+|..+- ..+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 5779999999999999988877653 78999999999999999999999999999999997543 457778888887
Q ss_pred E
Q psy10478 305 H 305 (451)
Q Consensus 305 ~ 305 (451)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 181
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.12 E-value=0.16 Score=57.00 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=39.8
Q ss_pred hhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCC
Q psy10478 277 FVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRD 325 (451)
Q Consensus 277 f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 325 (451)
......++||-++++-.|+|-|.+... -+|-|.---.++|.+-|+.|.
T Consensus 589 ~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 589 LKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred CcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccC
Confidence 345788999999999999999977655 467777777889999999995
No 182
>KOG1133|consensus
Probab=95.02 E-value=0.75 Score=48.47 Aligned_cols=120 Identities=21% Similarity=0.275 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHhhc-cCCCCcEEEEcCChhHHHHHHHHHHHCCC-------CeeeecCCCCHHHHHHHHHHhh----cCC
Q psy10478 214 DDIMADLRKLTNFE-NQFEGSTIIYCPTKVICEKVCDVLSRNGI-------QNRPYHAHISLKQRKEIHGLFV----KDL 281 (451)
Q Consensus 214 ~~~~~~L~~~l~~~-~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-------~v~~~h~~l~~~~R~~~~~~f~----~g~ 281 (451)
...+..|...+... ..-++.+++|.+|.+....+.+.+...|+ +-.++-..-+ -..+++.+. .|.
T Consensus 611 ~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 611 PEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGR 687 (821)
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCC
Confidence 34444554444332 11347899999999999999998886643 2333433333 234455444 455
Q ss_pred ceEEEEc--cccccccccCCc--cEEEEeCCCCC------------------------H--------HHHHHHhcccCCC
Q psy10478 282 IKVVVAT--CAFGMGIDKPDV--RCVIHYGAPKD------------------------L--------SAYYQEIGRAGRD 325 (451)
Q Consensus 282 ~~iLVaT--~~~~~GiD~p~v--~~VI~~~~p~s------------------------~--------~~y~Qr~GRagR~ 325 (451)
-.+|.|. .-+++|||+.|- +.||..|+|.. . ...-|-+|||=|.
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566665 578999999763 78998888751 1 1234888999888
Q ss_pred CCCcEEEEEee
Q psy10478 326 GLSSVCYTFYK 336 (451)
Q Consensus 326 g~~g~~i~l~~ 336 (451)
-+.=-++++++
T Consensus 768 ~~DYA~i~LlD 778 (821)
T KOG1133|consen 768 RKDYASIYLLD 778 (821)
T ss_pred hccceeEEEeh
Confidence 76555555544
No 183
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.059 Score=57.96 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC-CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN-GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG 292 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~-~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~ 292 (451)
..+.+....++......|+++||.++-+..+.++...|+.+ |.++..+|+++++.+|.....+..+|+.+|+|+|-.+-
T Consensus 228 SGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl 307 (730)
T COG1198 228 SGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL 307 (730)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh
Confidence 34445555555555558899999999999999999999876 88999999999999999999999999999999994321
Q ss_pred cccccCCccEEE
Q psy10478 293 MGIDKPDVRCVI 304 (451)
Q Consensus 293 ~GiD~p~v~~VI 304 (451)
-.=+++...||
T Consensus 308 -F~Pf~~LGLII 318 (730)
T COG1198 308 -FLPFKNLGLII 318 (730)
T ss_pred -cCchhhccEEE
Confidence 12234455554
No 184
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=94.98 E-value=0.017 Score=55.65 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=31.3
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhc
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSL 188 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l 188 (451)
++++||+||+|.+-... ...+..+.. +.....+++|||+......++...+
T Consensus 134 ~~~~vIvDEaH~~k~~~---s~~~~~l~~----l~~~~~~lLSgTP~~n~~~dl~~~l 184 (299)
T PF00176_consen 134 KWDRVIVDEAHRLKNKD---SKRYKALRK----LRARYRWLLSGTPIQNSLEDLYSLL 184 (299)
T ss_dssp EEEEEEETTGGGGTTTT---SHHHHHHHC----CCECEEEEE-SS-SSSGSHHHHHHH
T ss_pred cceeEEEeccccccccc---ccccccccc----cccceEEeeccccccccccccccch
Confidence 58999999999985433 123333322 3366779999998776555554433
No 185
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.54 E-value=0.21 Score=55.76 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=65.8
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-ccccccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-AFGMGIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-~~~~GiD~p~v~~VI 304 (451)
.+.+++|.++|+.-|.+.++.+++. ++.+..++|+.+..++.++++.+.+|+.+|+|+|. .+...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 5689999999999999999887764 67788999999999999999999999999999997 444567888888887
Q ss_pred E
Q psy10478 305 H 305 (451)
Q Consensus 305 ~ 305 (451)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 186
>KOG0952|consensus
Probab=94.53 E-value=0.02 Score=62.36 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=100.5
Q ss_pred hhhcCCCC-hhhhcCcCccccCCCeeEEEeCccccccch---hhHhhhhhhhhhhcccceeccccCCCCcchhhcc--cc
Q psy10478 40 HFKGSSVT-MAESQVPPDKCCDNCRQVVYMTPEYVTNNT---SFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCL--SE 113 (451)
Q Consensus 40 ~~~~s~~~-~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~---~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~--~~ 113 (451)
+-.+++.+ .+|.......-..++.+++|++|.+.+... .|...+...+.-+ .....+..+++..+ .+
T Consensus 950 ~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~-------ie~tgd~~pd~~~v~~~~ 1022 (1230)
T KOG0952|consen 950 APTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKV-------IELTGDVTPDVKAVREAD 1022 (1230)
T ss_pred CCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCcee-------EeccCccCCChhheecCc
Confidence 33445554 334444444445667899999999887544 1333222111111 12234445554444 56
Q ss_pred cccCCCCchhhhccc------cCcccEEEEccccccccCCCCcHHHHHHHHHhhcc------CCCCCEEEEEeeCChHHH
Q psy10478 114 LRLPLPDVPILFLSR------IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP------LPDVPILAVTATATPVVI 181 (451)
Q Consensus 114 l~~~~~~~~~~~l~~------l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~------~~~~~~v~lSAT~~~~~~ 181 (451)
+.+.+|..+.-..+. +..++++|+||.|++.+. .-|.+..+. .+.. .+.++++++|--+.. .
T Consensus 1023 ~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~---rgPVle~iv-sr~n~~s~~t~~~vr~~glsta~~n--a 1096 (1230)
T KOG0952|consen 1023 IVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED---RGPVLEVIV-SRMNYISSQTEEPVRYLGLSTALAN--A 1096 (1230)
T ss_pred eEEcccccccCccccccchhhhccccceeecccccccCC---CcceEEEEe-eccccCccccCcchhhhhHhhhhhc--c
Confidence 777777777665542 557999999999998653 113222111 1111 123445554433222 3
Q ss_pred HHHHHhcCCCCCeEEecCCCCCc-----------eEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHH
Q psy10478 182 DDICTSLMLRDPNIINTGFDRPN-----------LYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDV 250 (451)
Q Consensus 182 ~~i~~~l~l~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~ 250 (451)
.++..+++..+..-+ .+..+|. .+|..... .....-.+.++.+. +..+++||+.++.....-+..
T Consensus 1097 ~dla~wl~~~~~~nf-~~svrpvp~~~~i~gfp~~~~cprm~--smnkpa~qaik~~s-p~~p~lifv~srrqtrlta~~ 1172 (1230)
T KOG0952|consen 1097 NDLADWLNIKDMYNF-RPSVRPVPLEVHIDGFPGQHYCPRMM--SMNKPAFQAIKTHS-PIKPVLIFVSSRRQTRLTALD 1172 (1230)
T ss_pred HHHHHHhCCCCcCCC-CcccccCCceEeecCCCchhcchhhh--hcccHHHHHHhcCC-CCCceEEEeecccccccchHh
Confidence 477888887654111 1112221 12221111 11122233444443 889999999998887655554
Q ss_pred HH
Q psy10478 251 LS 252 (451)
Q Consensus 251 L~ 252 (451)
|-
T Consensus 1173 li 1174 (1230)
T KOG0952|consen 1173 LI 1174 (1230)
T ss_pred HH
Confidence 43
No 187
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.53 E-value=0.19 Score=52.83 Aligned_cols=76 Identities=24% Similarity=0.257 Sum_probs=65.9
Q ss_pred CCCcEEEEcCChhHHHH----HHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEK----VCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-FGMGIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~----l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiD~p~v~~VI 304 (451)
.|.++.+-++|.--|++ +.++|...|+.+..+.|.+....|.++++...+|+++++|+|-+ +...+++.+..+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 78899999999655554 55566667999999999999999999999999999999999975 56789999999988
Q ss_pred E
Q psy10478 305 H 305 (451)
Q Consensus 305 ~ 305 (451)
.
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 4
No 188
>KOG0701|consensus
Probab=94.33 E-value=0.031 Score=64.27 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=79.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHHCC-CCeeeecCCCCH-----------HHHHHHHHHhhcCCceEEEEccccccccccCC
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSRNG-IQNRPYHAHISL-----------KQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~~~-~~v~~~h~~l~~-----------~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~ 299 (451)
-..|+||+.+..+..+.+.+++.. ..+..+.|.+.+ -.+.+++..|...++.+|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 467999999999999998888763 334445555432 23667888899999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhcccCCCC
Q psy10478 300 VRCVIHYGAPKDLSAYYQEIGRAGRDG 326 (451)
Q Consensus 300 v~~VI~~~~p~s~~~y~Qr~GRagR~g 326 (451)
++.|+.++.|....+|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997753
No 189
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=94.01 E-value=0.62 Score=48.95 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=29.2
Q ss_pred CeeEEEeCccccccchh-hHhhhhhhhhhhcccceeccccC
Q psy10478 62 CRQVVYMTPEYVTNNTS-FLSRIPRIVLIAIDEAHCVSQWG 101 (451)
Q Consensus 62 ~~~vl~~tPe~l~~~~~-~~~~l~~~~~~~~de~~~~~~~~ 101 (451)
+.+|+++||+++..... ..-.+.++.++++||+|....||
T Consensus 246 ~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g 286 (518)
T PLN00206 246 GVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG 286 (518)
T ss_pred CCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc
Confidence 47999999999865220 11235667789999999887776
No 190
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.82 E-value=0.18 Score=57.64 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=64.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-ccccccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-AFGMGIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-~~~~GiD~p~v~~VI 304 (451)
.+.+++|.++|+.-+.++++.+.+. ++.+..++|+.+..++..+++.+.+|..+|+|+|. .+...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 5789999999999999999888753 46788899999999999999999999999999996 444556777888876
Q ss_pred E
Q psy10478 305 H 305 (451)
Q Consensus 305 ~ 305 (451)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 191
>KOG0383|consensus
Probab=92.22 E-value=0.19 Score=53.59 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=59.4
Q ss_pred HHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc---CCceEEEEccccccc
Q psy10478 220 LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK---DLIKVVVATCAFGMG 294 (451)
Q Consensus 220 L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~---g~~~iLVaT~~~~~G 294 (451)
|...++.....+.+++||..-....+-+..++...+ ....+.|..+..+|+.+++.|.. ...-.|.+|.+.|.|
T Consensus 620 l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 620 LLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 444444445578899999998888888888888778 78889999999999999999983 345588899887765
No 192
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=92.17 E-value=4.9 Score=44.13 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=81.2
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccc---cchhhHhhhhhhhhhhcccceec--cccCCCCcchh
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVT---NNTSFLSRIPRIVLIAIDEAHCV--SQWGHDFRPSY 108 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~---~~~~~~~~l~~~~~~~~de~~~~--~~~~~~~~~~~ 108 (451)
.-++....-+|.++..++..... .-++||++|||.|. ++.++++.|.++..+++||.|-. +.-|....-..
T Consensus 99 ~~G~~v~vRhGDT~~~er~r~~~----~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~L 174 (814)
T COG1201 99 ELGIEVAVRHGDTPQSEKQKMLK----NPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSL 174 (814)
T ss_pred HcCCccceecCCCChHHhhhccC----CCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhH
Confidence 33445577889999888766553 36899999999884 44458889999988999999955 34454444433
Q ss_pred hcccccc--------cCC---CCchhhhc------------cccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCC
Q psy10478 109 RCLSELR--------LPL---PDVPILFL------------SRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP 165 (451)
Q Consensus 109 ~~~~~l~--------~~~---~~~~~~~l------------~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~ 165 (451)
..+..+. .+| |.....++ ..-+++++-|+.-.+.+...++.+...|..+..+.+.
T Consensus 175 eRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~-- 252 (814)
T COG1201 175 ERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK-- 252 (814)
T ss_pred HHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh--
Confidence 3332221 111 11111111 1123455555555554444455566677777666554
Q ss_pred CCCEEEEEee
Q psy10478 166 DVPILAVTAT 175 (451)
Q Consensus 166 ~~~~v~lSAT 175 (451)
....+.|+-|
T Consensus 253 ~~ttLIF~NT 262 (814)
T COG1201 253 HRTTLIFTNT 262 (814)
T ss_pred cCcEEEEEeC
Confidence 2356777776
No 193
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.79 E-value=0.85 Score=51.12 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=67.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-ccccccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-AFGMGIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-~~~~GiD~p~v~~VI 304 (451)
.++++.|.++|---|++-++.++++ ++++..+..-.+.++...+++.+.+|+++|+|+|- .++.+|-+.|+..+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 7899999999998888887777765 67788888889999999999999999999999994 788999999999987
Q ss_pred E
Q psy10478 305 H 305 (451)
Q Consensus 305 ~ 305 (451)
.
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 3
No 194
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.75 E-value=0.96 Score=47.42 Aligned_cols=68 Identities=21% Similarity=0.379 Sum_probs=55.3
Q ss_pred EEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-cccCCccE
Q psy10478 234 TIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGMG-IDKPDVRC 302 (451)
Q Consensus 234 ~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v~~ 302 (451)
+||.++|++-|.++++.+... ++.+..++||++...+...++ .| .+|||||+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999888754 467889999999877665444 46 89999995 56666 88888888
Q ss_pred EEE
Q psy10478 303 VIH 305 (451)
Q Consensus 303 VI~ 305 (451)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 874
No 195
>KOG1016|consensus
Probab=91.68 E-value=0.48 Score=50.38 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=90.3
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHCCCC------------------eeeecCCCCHHHHHHHHHHhhcC--Cc-eEEEE
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRNGIQ------------------NRPYHAHISLKQRKEIHGLFVKD--LI-KVVVA 287 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~------------------v~~~h~~l~~~~R~~~~~~f~~g--~~-~iLVa 287 (451)
+-+.++|||..+....+.+.+.|.+..++ ..-+.|..+..+|++.+++|.+. -. -++++
T Consensus 717 ~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlflls 796 (1387)
T KOG1016|consen 717 QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLS 796 (1387)
T ss_pred ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeeh
Confidence 45788999999999998898888865221 23457788889999999999863 22 37889
Q ss_pred ccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeeccc
Q psy10478 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339 (451)
Q Consensus 288 T~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 339 (451)
|-+...|||+-..+.+|.|+..++..--.|.+-|.-|-|++..|+++---.|
T Consensus 797 trag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 797 TRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred hccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 9999999999888889999999988888999999999999888888744333
No 196
>PRK14701 reverse gyrase; Provisional
Probab=91.50 E-value=0.46 Score=56.17 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=54.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
.+.+++|.++|+.-+.++++.|+.. ++.+..+||+++..++.++++.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 5678999999999999999988873 466789999999999999999999999999999975
No 197
>KOG1513|consensus
Probab=91.16 E-value=0.2 Score=53.35 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=44.4
Q ss_pred HHhhcCCceEEEEccccccccccCCccEE--------EEeCCCCCHHHHHHHhcccCCCCC
Q psy10478 275 GLFVKDLIKVVVATCAFGMGIDKPDVRCV--------IHYGAPKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 275 ~~f~~g~~~iLVaT~~~~~GiD~p~v~~V--------I~~~~p~s~~~y~Qr~GRagR~g~ 327 (451)
++|.+|+-.|-|-+.+++-||-+..-+.| |-+.+|+|...-+|..||+-|..+
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 35778888888888999999988766555 457899999999999999999864
No 198
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=91.03 E-value=0.12 Score=56.57 Aligned_cols=110 Identities=9% Similarity=0.001 Sum_probs=65.8
Q ss_pred hhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc-CCCCc--
Q psy10478 29 LRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW-GHDFR-- 105 (451)
Q Consensus 29 ~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~-~~~~~-- 105 (451)
....+++.+.-+-+|+|+|.+....++..+..|+ .++++||.+-+... ..+.+..+.-.. ....+... |.+..
T Consensus 103 ~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~-~v~IVTpTrELA~Q-dae~m~~L~k~l--GLsV~~i~GG~~~~eq 178 (970)
T PRK12899 103 AIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK-PVHLVTVNDYLAQR-DCEWVGSVLRWL--GLTTGVLVSGSPLEKR 178 (970)
T ss_pred hhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC-CeEEEeCCHHHHHH-HHHHHHHHHhhc--CCeEEEEeCCCCHHHH
Confidence 3344566777778999999998888777666664 46777888877644 333332221000 00111111 11111
Q ss_pred -chhhcccccccCCCCch-hhhccc-----------cCcccEEEEccccccc
Q psy10478 106 -PSYRCLSELRLPLPDVP-ILFLSR-----------IPRIVLIAIDEAHCVS 144 (451)
Q Consensus 106 -~~~~~~~~l~~~~~~~~-~~~l~~-----------l~~l~~vViDEah~~~ 144 (451)
..+ ..+++.+||++. +..+.. ...+.++||||||.++
T Consensus 179 ~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 179 KEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 123 378999999999 655543 1245799999999876
No 199
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=90.15 E-value=0.15 Score=55.76 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=39.4
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCcccccc-----chhhHhhhhhhhhhhcccceec
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTN-----NTSFLSRIPRIVLIAIDEAHCV 97 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~-----~~~~~~~l~~~~~~~~de~~~~ 97 (451)
.+.++.++|+.+..++..+. .+.+|+++||+++.. ...|...+..+.++++||+|..
T Consensus 108 ~i~v~~~~Gdt~~~~r~~i~-----~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~ 169 (742)
T TIGR03817 108 GVRPATYDGDTPTEERRWAR-----EHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY 169 (742)
T ss_pred CeEEEEEeCCCCHHHHHHHh-----cCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc
Confidence 34556677777765543222 236999999998853 2235566888899999999975
No 200
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.43 E-value=2.7 Score=37.75 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=52.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----ccc-ccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FGM-GIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~-GiD~p~ 299 (451)
.+.++||.++++..+.+.+..+... ++.+..++|+.+..+...... +..+|+|+|.- +.. -.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 5678999999999999888777654 677889999988766543332 66789999942 222 256677
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 777764
No 201
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.40 E-value=0.81 Score=52.60 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=52.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCe---eeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQN---RPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v---~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
.+.+++|.++|+.-+.++++.+.+. ++.+ ..+||+++..++....+.+.+|..+|+|+|+.
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4688999999999999998888764 3333 36899999999999999999999999999974
No 202
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=89.23 E-value=0.44 Score=45.67 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=31.9
Q ss_pred cEEEEccccccccCCC---CcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 133 VLIAIDEAHCVSQWGH---DFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 133 ~~vViDEah~~~~~g~---~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
.+||+||||..-.... .....-..+..+...+|+.+++.+|||...+.
T Consensus 174 gvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 174 GVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred ceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 4899999998764321 01112233455677789999999999975443
No 203
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=89.16 E-value=0.36 Score=52.28 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=13.1
Q ss_pred CcccEEEEccccccc
Q psy10478 130 PRIVLIAIDEAHCVS 144 (451)
Q Consensus 130 ~~l~~vViDEah~~~ 144 (451)
.++.++||||||.++
T Consensus 194 r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 194 RPFNYVIVDEVDSVL 208 (762)
T ss_pred ccCcEEEEecHhhHh
Confidence 468899999999985
No 204
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=89.03 E-value=0.71 Score=50.77 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=40.4
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHH-hhccCCCCCEEEEEeeCCh-----HHHHHHHHhcCCCCC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSE-LRLPLPDVPILAVTATATP-----VVIDDICTSLMLRDP 193 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~-l~~~~~~~~~v~lSAT~~~-----~~~~~i~~~l~l~~~ 193 (451)
..+..+||||||++... +... .|.+ +++..+..-+.+|||.+.. .-...+++.|++...
T Consensus 30 ~~itgiiv~~Ahr~~~~---~~ea--FI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk~L~i~~v 94 (814)
T TIGR00596 30 ELITGILVLRADRIIES---SQEA--FILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMRNLFLRHV 94 (814)
T ss_pred HHccEEEEeeccccccc---ccHH--HHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHHHhCcCeE
Confidence 47999999999998642 2222 2332 4444455567899999876 346788888887753
No 205
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=88.86 E-value=2.2 Score=39.81 Aligned_cols=87 Identities=14% Similarity=0.107 Sum_probs=64.1
Q ss_pred CCCeeeecCCCCHHHHHHHHHHhhcCC----ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccC-CCCCCc
Q psy10478 255 GIQNRPYHAHISLKQRKEIHGLFVKDL----IKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAG-RDGLSS 329 (451)
Q Consensus 255 ~~~v~~~h~~l~~~~R~~~~~~f~~g~----~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag-R~g~~g 329 (451)
++.+..++++.+.+. -.|.++. ..|+|+=+.++||+.+++..+......++...++.||.=--| |.|=..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 577777777655433 3344443 789999999999999999999999999998888888764455 666677
Q ss_pred EEEEEeecccHHHHhhh
Q psy10478 330 VCYTFYKTADFTKNNMI 346 (451)
Q Consensus 330 ~~i~l~~~~d~~~~~~~ 346 (451)
.|-++.+++-...+..+
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 88888766555544443
No 206
>KOG1001|consensus
Probab=88.61 E-value=0.17 Score=54.20 Aligned_cols=102 Identities=19% Similarity=0.125 Sum_probs=90.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCce--EEEEccccccccccCCccEEEEeCCC
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIK--VVVATCAFGMGIDKPDVRCVIHYGAP 309 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~--iLVaT~~~~~GiD~p~v~~VI~~~~p 309 (451)
++++||+.-.....-+...|...++....|.|.|+...|.+.+..|..+... .+++..+.+.|+|+-...+|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 5999999999999999999998899999999999999999999999965432 55678999999999999999999999
Q ss_pred CCHHHHHHHhcccCCCCCCcEEEE
Q psy10478 310 KDLSAYYQEIGRAGRDGLSSVCYT 333 (451)
Q Consensus 310 ~s~~~y~Qr~GRagR~g~~g~~i~ 333 (451)
+++..--|.+-||-|-|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999997655444
No 207
>KOG0347|consensus
Probab=88.60 E-value=1 Score=46.22 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=55.2
Q ss_pred CCCc--EEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----ccccc---
Q psy10478 230 FEGS--TIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FGMGI--- 295 (451)
Q Consensus 230 ~~~~--~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~Gi--- 295 (451)
.+.+ .||+++|++-|-++...|... ++.+..+.|||....++++++. .-.|+|||+- +..+-
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhh
Confidence 4455 999999999999999988865 8899999999998888888775 6679999952 22221
Q ss_pred -ccCCccEEE
Q psy10478 296 -DKPDVRCVI 304 (451)
Q Consensus 296 -D~p~v~~VI 304 (451)
++.++++.|
T Consensus 336 ~~~k~vkcLV 345 (731)
T KOG0347|consen 336 GNFKKVKCLV 345 (731)
T ss_pred hhhhhceEEE
Confidence 455666665
No 208
>KOG0331|consensus
Probab=88.46 E-value=2.5 Score=43.77 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=69.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-cccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGMG-IDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~ 299 (451)
.+..+||.++|++-|.++.+.+.+. ++...+++|+.+...+..-++ ..++|+|||. .+.+| +|+..
T Consensus 164 ~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~ 239 (519)
T KOG0331|consen 164 DGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSR 239 (519)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccc
Confidence 3566999999999999999988876 355889999998766554443 3468999994 56666 57888
Q ss_pred ccEEEE--------eCCCCCHHHHHHHhcccCC
Q psy10478 300 VRCVIH--------YGAPKDLSAYYQEIGRAGR 324 (451)
Q Consensus 300 v~~VI~--------~~~p~s~~~y~Qr~GRagR 324 (451)
++++|. .|+-..+...++.++|.-|
T Consensus 240 v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 240 VTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 888874 4555577788888888777
No 209
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.42 E-value=1.4 Score=45.59 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=62.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc-cc------cc-ccCCcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAF-GM------GI-DKPDVR 301 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~-~~------Gi-D~p~v~ 301 (451)
.++.+||.+++++-+......|...|+.+..++++.+..++..++..+.+|+.+++++|+-. .. .+ ...++.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 35679999999999999999999999999999999999999999999999999999999632 11 12 445677
Q ss_pred EEEE
Q psy10478 302 CVIH 305 (451)
Q Consensus 302 ~VI~ 305 (451)
+||.
T Consensus 130 ~iVi 133 (470)
T TIGR00614 130 LIAV 133 (470)
T ss_pred EEEE
Confidence 7663
No 210
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=87.36 E-value=2 Score=45.94 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=54.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.++.++|.++++.-++.....|+..|+.+..+|++++..++..+...+..|..++++.|.
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 346789999999999988999999999999999999999999999999999999999885
No 211
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.05 E-value=2.4 Score=45.67 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=53.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cccc-ccccC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGM-GIDKP 298 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p 298 (451)
...++||.|+|+.-+.++++.+... ++.+..+||+.+.+.+...+ .+..+|+|+|. .+.+ .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchh
Confidence 4568999999999999998877653 67888999998766554433 24578999994 3333 36788
Q ss_pred CccEEEE
Q psy10478 299 DVRCVIH 305 (451)
Q Consensus 299 ~v~~VI~ 305 (451)
++.+||.
T Consensus 149 ~l~~lVl 155 (629)
T PRK11634 149 KLSGLVL 155 (629)
T ss_pred hceEEEe
Confidence 8888874
No 212
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=86.26 E-value=0.9 Score=49.67 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCC-hhhhcCcCccccCCCeeEEEeCccccc
Q psy10478 10 SEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVT-MAESQVPPDKCCDNCRQVVYMTPEYVT 74 (451)
Q Consensus 10 ~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~-~~e~~~~~~~~~~~~~~vl~~tPe~l~ 74 (451)
+++..+..+-+.++...+. +.++.+.|+.+ ..++.... ..+|+|+||.++.
T Consensus 129 ~~LA~qd~e~~~~l~~~lG--------l~v~~i~g~~~~~~~r~~~y------~~dIvygT~~~l~ 180 (790)
T PRK09200 129 DYLAKRDAEEMGQVYEFLG--------LTVGLNFSDIDDASEKKAIY------EADIIYTTNSELG 180 (790)
T ss_pred HHHHHHHHHHHHHHHhhcC--------CeEEEEeCCCCcHHHHHHhc------CCCEEEECCcccc
Confidence 4455555444444444433 34555666666 55544322 3689999999994
No 213
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=86.19 E-value=0.29 Score=54.28 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=74.4
Q ss_pred HHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCcccccc-----chhhHhhhhhhhhhhcccce
Q psy10478 21 KRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTN-----NTSFLSRIPRIVLIAIDEAH 95 (451)
Q Consensus 21 ~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~-----~~~~~~~l~~~~~~~~de~~ 95 (451)
+|.+.+.++...--..+.+..++|.+...+++ .+..+..+||+++|.|+.. ...|.-++..+..+|+||+|
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 44444444433222256788888988888765 3446679999999999865 22477777888899999999
Q ss_pred ec-cccCCCCcchhhccccccc------------CCCCchhhhccccCcccEEE-Ecccc
Q psy10478 96 CV-SQWGHDFRPSYRCLSELRL------------PLPDVPILFLSRIPRIVLIA-IDEAH 141 (451)
Q Consensus 96 ~~-~~~~~~~~~~~~~~~~l~~------------~~~~~~~~~l~~l~~l~~vV-iDEah 141 (451)
.. +-.|.+..-..+.+.+... +|-+.+-.+...+.+...-+ +||..
T Consensus 206 tYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g 265 (851)
T COG1205 206 TYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDG 265 (851)
T ss_pred eccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCC
Confidence 88 6777776666555544443 33333333333344444444 77765
No 214
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=85.33 E-value=2.9 Score=42.72 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=53.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHH----CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc------cccccccCCc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSR----NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA------FGMGIDKPDV 300 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~----~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~------~~~GiD~p~v 300 (451)
+.++||.++|++-+.++++.+.. .++.+..++|+.+...+...+ .+..+|+|+|.- ....++..++
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 46799999999999988876664 367899999999877665444 356789999962 2245677888
Q ss_pred cEEEE
Q psy10478 301 RCVIH 305 (451)
Q Consensus 301 ~~VI~ 305 (451)
++||.
T Consensus 149 ~~lVi 153 (434)
T PRK11192 149 ETLIL 153 (434)
T ss_pred CEEEE
Confidence 88875
No 215
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=85.07 E-value=2 Score=44.28 Aligned_cols=71 Identities=13% Similarity=0.248 Sum_probs=54.1
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccc-cccccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFG-MGIDKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~-~GiD~p~ 299 (451)
..++||.|+|++-+.++++.++.. ++.+..++|+.+...+...++ +..+|+|+|. .+. ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 447999999999999999888753 577889999998766554333 5678999994 333 3567888
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 148 l~~lVi 153 (460)
T PRK11776 148 LNTLVL 153 (460)
T ss_pred CCEEEE
Confidence 888874
No 216
>KOG0345|consensus
Probab=84.88 E-value=0.49 Score=47.56 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=51.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhh-Hhhh--h
Q psy10478 8 NDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSF-LSRI--P 84 (451)
Q Consensus 8 ~~~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~-~~~l--~ 84 (451)
++||+..||.+++..+-.-++ .+.+..+.||.+..+- +...++....|+++||++|+.-..- ...+ +
T Consensus 87 PTRELa~QI~~V~~~F~~~l~-------~l~~~l~vGG~~v~~D---i~~fkee~~nIlVgTPGRL~di~~~~~~~l~~r 156 (567)
T KOG0345|consen 87 PTRELARQIREVAQPFLEHLP-------NLNCELLVGGRSVEED---IKTFKEEGPNILVGTPGRLLDILQREAEKLSFR 156 (567)
T ss_pred CcHHHHHHHHHHHHHHHHhhh-------ccceEEEecCccHHHH---HHHHHHhCCcEEEeCchhHHHHHhchhhhcccc
Confidence 467777777777766654422 2234455566554432 3344556789999999999862211 1113 3
Q ss_pred hhhhhhcccceeccccC
Q psy10478 85 RIVLIAIDEAHCVSQWG 101 (451)
Q Consensus 85 ~~~~~~~de~~~~~~~~ 101 (451)
.+.+++.|||+-...+|
T Consensus 157 sLe~LVLDEADrLldmg 173 (567)
T KOG0345|consen 157 SLEILVLDEADRLLDMG 173 (567)
T ss_pred ccceEEecchHhHhccc
Confidence 67788999998666555
No 217
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.51 E-value=2.8 Score=44.57 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=53.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cccc--ccccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGM--GIDKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~--GiD~p~ 299 (451)
..++||.++|++-+.++++.+.+. ++.+..+||+.+...+...+ .+..+|||+|. .+.. .+++..
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l----~~~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL----QQGVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH----hCCCCEEEECHHHHHHHHHhccccchhh
Confidence 468999999999999998877754 67789999999877655444 34678999994 3322 366777
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
++++|.
T Consensus 160 v~~lVi 165 (572)
T PRK04537 160 CEICVL 165 (572)
T ss_pred eeeeEe
Confidence 777764
No 218
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.30 E-value=4.1 Score=41.50 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=52.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----c-ccccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----F-GMGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~-~~GiD~p~ 299 (451)
.+.++||.++|++-|.++++.+... ++.+..++|+.+.......+ .+..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~ 157 (423)
T PRK04837 82 NQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL----ESGVDILIGTTGRLIDYAKQNHINLGA 157 (423)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3467999999999999987766543 78888999998765544333 345789999962 2 23567788
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+.++|.
T Consensus 158 v~~lVi 163 (423)
T PRK04837 158 IQVVVL 163 (423)
T ss_pred ccEEEE
Confidence 888875
No 219
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=81.77 E-value=5.1 Score=41.36 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=52.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc------ccccccccCCcc
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC------AFGMGIDKPDVR 301 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~------~~~~GiD~p~v~ 301 (451)
.++||.++|++-|.++.+.+... ++.+..++|+.+.......+ .+..+|+|+|. .....+++.+++
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 47999999999999998887754 56778889998866543322 36789999995 224456788888
Q ss_pred EEEE
Q psy10478 302 CVIH 305 (451)
Q Consensus 302 ~VI~ 305 (451)
+||.
T Consensus 152 ~lVi 155 (456)
T PRK10590 152 ILVL 155 (456)
T ss_pred EEEe
Confidence 8874
No 220
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=81.20 E-value=2.9 Score=32.22 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=32.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
.+.++++||.+-..+...+..|+..|+.+..+.||+.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 5678999999988888999999999998889999975
No 221
>KOG1132|consensus
Probab=80.61 E-value=54 Score=36.20 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=47.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHHC-------CCCeeeecCCCCHHHHHHHHHHhh--------cCCceEEEEccccccccc
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSRN-------GIQNRPYHAHISLKQRKEIHGLFV--------KDLIKVVVATCAFGMGID 296 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~~-------~~~v~~~h~~l~~~~R~~~~~~f~--------~g~~~iLVaT~~~~~GiD 296 (451)
...|||.++-..-+++...+... +.+-..+--. +..+-.+++..|- .|-.-..||=-..++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 44999999988777775555432 1111111111 2222233333333 234457788889999999
Q ss_pred cCC--ccEEEEeCCCC
Q psy10478 297 KPD--VRCVIHYGAPK 310 (451)
Q Consensus 297 ~p~--v~~VI~~~~p~ 310 (451)
+.| -+.||..|+|.
T Consensus 641 FsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPY 656 (945)
T ss_pred ccccCCceeEEecCCC
Confidence 975 47899999875
No 222
>PRK09401 reverse gyrase; Reviewed
Probab=80.53 E-value=3.9 Score=47.18 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=56.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCC----CCe--eeecCCCCHHHHHHHHHHhhcCCceEEEEccccc----cccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNG----IQN--RPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG----MGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~----~~v--~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~----~GiD~p~ 299 (451)
.+.+++|.++|+.-+.++++.+.+.+ +.+ ...|++++..++.+..+.+.+|..+|+|+|.-.- ..+....
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~ 201 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKK 201 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 57899999999999999999988753 333 3456667778888888899999999999995211 1333344
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
++++|.
T Consensus 202 ~~~lVv 207 (1176)
T PRK09401 202 FDFVFV 207 (1176)
T ss_pred cCEEEE
Confidence 777663
No 223
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=79.89 E-value=6 Score=42.48 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=54.1
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+.+||.+++++-+......|...|+.+..++++.+.+++..+...+.+|+++++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 46799999999999999999999999999999999999999999999999999999884
No 224
>KOG0339|consensus
Probab=79.30 E-value=6.2 Score=40.43 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=51.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHH----CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cc-ccccccCCcc
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSR----NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AF-GMGIDKPDVR 301 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~----~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~-~~GiD~p~v~ 301 (451)
.=.+|.|+|++.|.++....++ .|+.+..+|||.+..++...++ ...-++|||+ ++ -.++|+..+.
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS 372 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVS 372 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeee
Confidence 3357788999998887655544 4788999999999988877665 4567999995 22 2467888888
Q ss_pred EEEE
Q psy10478 302 CVIH 305 (451)
Q Consensus 302 ~VI~ 305 (451)
+.|.
T Consensus 373 ~LV~ 376 (731)
T KOG0339|consen 373 YLVL 376 (731)
T ss_pred EEEE
Confidence 7663
No 225
>PTZ00110 helicase; Provisional
Probab=78.12 E-value=6.5 Score=41.61 Aligned_cols=71 Identities=10% Similarity=0.142 Sum_probs=51.6
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-cccCCc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGMG-IDKPDV 300 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v 300 (451)
+..+||.++|++-|.++.+.+.+. ++.+...+|+.+.......+ .. ..+|+|+|. .+..+ +++..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l---~~-~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL---RR-GVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH---Hc-CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 556999999999999998888865 46777888888765443332 33 468999995 44444 567788
Q ss_pred cEEEE
Q psy10478 301 RCVIH 305 (451)
Q Consensus 301 ~~VI~ 305 (451)
++||.
T Consensus 279 ~~lVi 283 (545)
T PTZ00110 279 TYLVL 283 (545)
T ss_pred cEEEe
Confidence 87764
No 226
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=76.99 E-value=3.7 Score=32.22 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
++.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 6678999999988899999999999999888889875
No 227
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=76.75 E-value=7.9 Score=44.05 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=52.8
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc--CCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK--DLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~--g~~~iLVaT~ 289 (451)
.++.+||.+++++-+..-...|...|+.+..+.|+++..++..++..+.. |+++||++|+
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 35689999999999886666677789999999999999999999998877 8999999997
No 228
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=76.60 E-value=8.8 Score=39.79 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=53.1
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----c-ccccccCCc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----F-GMGIDKPDV 300 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~-~~GiD~p~v 300 (451)
..++||.++|++-+.++.+.++.. ++.+..++|+.+..... +.+..+..+|+|+|.- . ...+.+.++
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l 238 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHLDMV 238 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 467999999999999988877754 67888999998755433 3455677899999952 1 224566777
Q ss_pred cEEEE
Q psy10478 301 RCVIH 305 (451)
Q Consensus 301 ~~VI~ 305 (451)
++||.
T Consensus 239 ~~lVi 243 (475)
T PRK01297 239 EVMVL 243 (475)
T ss_pred ceEEe
Confidence 77764
No 229
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=75.43 E-value=3.4 Score=36.60 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=23.2
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
..+++|||||=.+. -|.+.++ ....+.++||.|...
T Consensus 90 ~~DlliVDEAAaIp------~p~L~~l------l~~~~~vv~stTi~G 125 (177)
T PF05127_consen 90 QADLLIVDEAAAIP------LPLLKQL------LRRFPRVVFSTTIHG 125 (177)
T ss_dssp --SCEEECTGGGS-------HHHHHHH------HCCSSEEEEEEEBSS
T ss_pred CCCEEEEechhcCC------HHHHHHH------HhhCCEEEEEeeccc
Confidence 46899999998773 2334333 245677899999753
No 230
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=75.12 E-value=1.9 Score=37.96 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=12.9
Q ss_pred cccEEEEccccccccC
Q psy10478 131 RIVLIAIDEAHCVSQW 146 (451)
Q Consensus 131 ~l~~vViDEah~~~~~ 146 (451)
+-.+|||||||.+.+.
T Consensus 145 ~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 145 KDNIVIFDEAHNLEDA 160 (174)
T ss_dssp CCEEEEETTGGGCGGG
T ss_pred cCcEEEEecccchHHH
Confidence 4569999999998753
No 231
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=74.65 E-value=13 Score=40.39 Aligned_cols=55 Identities=9% Similarity=0.112 Sum_probs=46.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH----CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR----NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~----~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
.+.++.|.++|..-|.+.++++.. .|+.+..+.|+++..+|..... .+|+++|..
T Consensus 96 ~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 96 TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 567899999999988888887765 4899999999999888776653 689999986
No 232
>KOG0338|consensus
Probab=74.31 E-value=11 Score=38.80 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=58.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-------cccccccC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-------FGMGIDKP 298 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-------~~~GiD~p 298 (451)
.-.++||.|+|++-+-+++...++. .+.+...-||++-..++.++. ...+|+|||+- -+.++|+.
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCcccc
Confidence 4567999999999888877766654 678888999999887777664 45689999963 35677777
Q ss_pred CccEEEEeCCCC
Q psy10478 299 DVRCVIHYGAPK 310 (451)
Q Consensus 299 ~v~~VI~~~~p~ 310 (451)
++.+.|.-....
T Consensus 327 siEVLvlDEADR 338 (691)
T KOG0338|consen 327 SIEVLVLDEADR 338 (691)
T ss_pred ceeEEEechHHH
Confidence 887777644443
No 233
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=73.78 E-value=24 Score=37.97 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=52.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH----CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR----NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~----~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI 304 (451)
.+.+++|.++|+.-|.+.++.+.. .|+.+..+.|+++..+|+... ..+|+++|+. +-|+|.=.-+.+.
T Consensus 143 ~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDyLrd~~~~ 214 (656)
T PRK12898 143 AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDYLRDRLAL 214 (656)
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhhccccccc
Confidence 678999999999999888777765 489999999999987766543 4589999975 6777765444443
No 234
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=73.59 E-value=6.9 Score=30.44 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=31.8
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
.+.++++||++-..+...+..|...|+ ++..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 677899999998888899999999998 5888888874
No 235
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=72.91 E-value=5.5 Score=30.52 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=33.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.++||||.+-..+..++..|...|+. +..+.||+.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 6789999999989999999999999987 888899874
No 236
>KOG0391|consensus
Probab=71.71 E-value=3.3 Score=46.44 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=30.5
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
.++.++|+||||.+-.|-. ..+..+.. +..-+.+++|+|+-....-++
T Consensus 736 krWqyLvLDEaqnIKnfks---qrWQAlln----fnsqrRLLLtgTPLqNslmEL 783 (1958)
T KOG0391|consen 736 KRWQYLVLDEAQNIKNFKS---QRWQALLN----FNSQRRLLLTGTPLQNSLMEL 783 (1958)
T ss_pred hccceeehhhhhhhcchhH---HHHHHHhc----cchhheeeecCCchhhHHHHH
Confidence 3799999999999976532 12223322 234567899999765544333
No 237
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=70.10 E-value=4.5 Score=38.93 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=24.8
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccC--CCCCEEEE
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL--PDVPILAV 172 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~--~~~~~v~l 172 (451)
-+++++||||.|.++... .+..-..+..++... -++|+|++
T Consensus 144 ~~vrmLIIDE~H~lLaGs--~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGS--YRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred cCCcEEEeechHHHhccc--HHHHHHHHHHHHHHhhccCCCeEEe
Confidence 378999999999988744 333322222222222 26778866
No 238
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=69.79 E-value=26 Score=29.95 Aligned_cols=71 Identities=15% Similarity=0.296 Sum_probs=50.3
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHH-HHHHHHHHhhcCCceEEEEccc-----cc-cccccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLK-QRKEIHGLFVKDLIKVVVATCA-----FG-MGIDKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~-~R~~~~~~f~~g~~~iLVaT~~-----~~-~GiD~p~ 299 (451)
..++|+.++++..++++.+.+... ++.+..+|++.+.. +....+ .++.+|+|+|.. +. ..+++.+
T Consensus 44 ~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~~ 119 (169)
T PF00270_consen 44 DARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINISR 119 (169)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGTT
T ss_pred CceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhcccccccccccc
Confidence 459999999999999999888875 35788899998854 222223 677899999942 22 2235566
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 120 ~~~iVi 125 (169)
T PF00270_consen 120 LSLIVI 125 (169)
T ss_dssp ESEEEE
T ss_pred ceeecc
Confidence 666664
No 239
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=69.44 E-value=7 Score=32.07 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=33.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCC--CeeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGI--QNRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~--~v~~~h~~l~~ 267 (451)
.+.++++||++-..+...+..|...|+ .+..+.||+..
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 678899999998889999999999999 58899999843
No 240
>PTZ00424 helicase 45; Provisional
Probab=69.34 E-value=1.8 Score=43.66 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=28.7
Q ss_pred CeeEEEeCccccccchh-hHhhhhhhhhhhcccceeccccC
Q psy10478 62 CRQVVYMTPEYVTNNTS-FLSRIPRIVLIAIDEAHCVSQWG 101 (451)
Q Consensus 62 ~~~vl~~tPe~l~~~~~-~~~~l~~~~~~~~de~~~~~~~~ 101 (451)
..+|+++||+++..... -...+.++.++++||+|+...++
T Consensus 146 ~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~ 186 (401)
T PTZ00424 146 GVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG 186 (401)
T ss_pred CCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc
Confidence 36899999999875321 11246677889999999876554
No 241
>PRK13766 Hef nuclease; Provisional
Probab=69.23 E-value=14 Score=40.82 Aligned_cols=75 Identities=27% Similarity=0.318 Sum_probs=55.8
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-CC---CeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc------ccccccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-GI---QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC------AFGMGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-~~---~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~------~~~~GiD~p~ 299 (451)
.++++||.|+|+..+++..+.+++. +. .+..++|+.+..+|..+.. ..+|+|+|. .+..-+++.+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChhh
Confidence 6789999999999998888888764 33 6888999999888765443 247999995 2334456778
Q ss_pred ccEEEEeCCC
Q psy10478 300 VRCVIHYGAP 309 (451)
Q Consensus 300 v~~VI~~~~p 309 (451)
+++||.-...
T Consensus 132 ~~liVvDEaH 141 (773)
T PRK13766 132 VSLLIFDEAH 141 (773)
T ss_pred CcEEEEECCc
Confidence 8888754443
No 242
>KOG0329|consensus
Probab=69.06 E-value=16 Score=34.22 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=65.3
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc----c--cccccccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC----A--FGMGIDKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~----~--~~~GiD~p~ 299 (451)
.-.++|.|.|++-|-++.+..... ++++..+.||++-..-.+.++. -..|+|+|+ + -.+.+++.+
T Consensus 110 ~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~ 185 (387)
T KOG0329|consen 110 QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKN 185 (387)
T ss_pred eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhh
Confidence 346899999999999887765532 6789999999987666655543 556999996 2 345678888
Q ss_pred ccEEEEeCCCC-----CHHHHHHHhcccCCCCCC
Q psy10478 300 VRCVIHYGAPK-----DLSAYYQEIGRAGRDGLS 328 (451)
Q Consensus 300 v~~VI~~~~p~-----s~~~y~Qr~GRagR~g~~ 328 (451)
+.+-+.-.+.+ ++..-+|.+=|+--.+++
T Consensus 186 vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQ 219 (387)
T KOG0329|consen 186 VKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQ 219 (387)
T ss_pred cceeehhhHHHHHHHHHHHHHHHHHhhcCcccce
Confidence 88776544443 333446777776555443
No 243
>KOG0330|consensus
Probab=68.10 E-value=25 Score=35.04 Aligned_cols=83 Identities=11% Similarity=0.176 Sum_probs=59.8
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc--
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-- 290 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-- 290 (451)
+..|..++... ....++|.++|++-|.++++.+... |+.+..+-||++.......+ ..+..|||||.-
T Consensus 117 LPIl~~LL~~p--~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L----~kkPhilVaTPGrL 190 (476)
T KOG0330|consen 117 LPILQRLLQEP--KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQL----SKKPHILVATPGRL 190 (476)
T ss_pred HHHHHHHHcCC--CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHh----hcCCCEEEeCcHHH
Confidence 34455555533 4577999999999999999998876 67889999999855433222 345678999952
Q ss_pred ---c--ccccccCCccEEEE
Q psy10478 291 ---F--GMGIDKPDVRCVIH 305 (451)
Q Consensus 291 ---~--~~GiD~p~v~~VI~ 305 (451)
+ ..|+.+..+++.|.
T Consensus 191 ~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 191 WDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred HHHHHhccCccHHHhHHHhh
Confidence 2 57888888887663
No 244
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=67.20 E-value=8.5 Score=29.85 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=31.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
.+.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 3568999999987888889999999998777888874
No 245
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=67.18 E-value=7.5 Score=42.99 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccc
Q psy10478 10 SEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVT 74 (451)
Q Consensus 10 ~~i~~~~~~~~~q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~ 74 (451)
++|.....+.+..+...+.+ .+....++.+..++.... ..+|+|+||..+-
T Consensus 133 dyLA~RD~e~m~~l~~~lGl--------sv~~i~~~~~~~~r~~~Y------~~dI~YgT~~e~g 183 (908)
T PRK13107 133 DYLARRDAENNRPLFEFLGL--------TVGINVAGLGQQEKKAAY------NADITYGTNNEFG 183 (908)
T ss_pred HHHHHHHHHHHHHHHHhcCC--------eEEEecCCCCHHHHHhcC------CCCeEEeCCCccc
Confidence 45555555555555555444 233445555554433332 4699999999983
No 246
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=66.81 E-value=13 Score=29.33 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=31.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
...++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 5678999999988888999999999975 777888764
No 247
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=66.74 E-value=7.6 Score=30.51 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=31.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
++.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 6678999999977888888999999985 777888864
No 248
>KOG1513|consensus
Probab=66.48 E-value=7.2 Score=42.14 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=28.2
Q ss_pred cEEEEccccccccC----CCCcHHHHHHHHHhhccCCCCCEEEEEeeC
Q psy10478 133 VLIAIDEAHCVSQW----GHDFRPSYRCLSELRLPLPDVPILAVTATA 176 (451)
Q Consensus 133 ~~vViDEah~~~~~----g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~ 176 (451)
++||+||||.--.. |..-...=..+..+...+|+..+|..|||-
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATG 454 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATG 454 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccC
Confidence 58999999975321 111111123455567778999999999984
No 249
>KOG4439|consensus
Probab=66.36 E-value=4 Score=43.39 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=27.8
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
.+..||+||||.+-.... ..-..+..+ ......++|+|+-....-|+
T Consensus 463 ~W~RVILDEAH~IrN~~t---q~S~AVC~L----~a~~RWclTGTPiqNn~~Dv 509 (901)
T KOG4439|consen 463 AWSRVILDEAHNIRNSNT---QCSKAVCKL----SAKSRWCLTGTPIQNNLWDV 509 (901)
T ss_pred hHHHhhhhhhhhhcccch---hHHHHHHHH----hhcceeecccCccccchhHH
Confidence 477899999998854221 111223333 34455789999865443333
No 250
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=65.19 E-value=6.2 Score=42.95 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=43.0
Q ss_pred CCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCC
Q psy10478 280 DLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRD 325 (451)
Q Consensus 280 g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 325 (451)
...+.|++-.++-+|.|-|+|=.++-+....|..+=.|.+||+-|-
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 4578999999999999999999999999999999999999999994
No 251
>KOG0335|consensus
Probab=65.04 E-value=14 Score=37.84 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=49.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEc-----cccccc-cccCCc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT-----CAFGMG-IDKPDV 300 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT-----~~~~~G-iD~p~v 300 (451)
...+||+.+|++-+.++++.-++. +..+...+|+.+ ......+....++|+||| +++++| |.++++
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~----~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~ 227 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTD----LGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNC 227 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcc----hhhhhhhhccCccEEEecCchhhhhhhcceeehhhC
Confidence 367999999999999999887765 456666777733 223334556788999999 456665 455566
Q ss_pred cEEE
Q psy10478 301 RCVI 304 (451)
Q Consensus 301 ~~VI 304 (451)
+++|
T Consensus 228 k~~v 231 (482)
T KOG0335|consen 228 KFLV 231 (482)
T ss_pred cEEE
Confidence 6554
No 252
>PRK08727 hypothetical protein; Validated
Probab=64.38 E-value=6.5 Score=36.53 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.6
Q ss_pred CcccEEEEccccccccCC
Q psy10478 130 PRIVLIAIDEAHCVSQWG 147 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g 147 (451)
.+.++|||||+|.+..+.
T Consensus 92 ~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 92 EGRSLVALDGLESIAGQR 109 (233)
T ss_pred hcCCEEEEeCcccccCCh
Confidence 468899999999887543
No 253
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=64.35 E-value=3.8 Score=39.48 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=12.2
Q ss_pred cccEEEEcccccccc
Q psy10478 131 RIVLIAIDEAHCVSQ 145 (451)
Q Consensus 131 ~l~~vViDEah~~~~ 145 (451)
.-.++||||||.+.+
T Consensus 236 ~~~~lIiDEAHnL~d 250 (289)
T smart00488 236 KDSIVIFDEAHNLDN 250 (289)
T ss_pred cccEEEEeCccChHH
Confidence 357999999998853
No 254
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=64.35 E-value=3.8 Score=39.48 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=12.2
Q ss_pred cccEEEEcccccccc
Q psy10478 131 RIVLIAIDEAHCVSQ 145 (451)
Q Consensus 131 ~l~~vViDEah~~~~ 145 (451)
.-.++||||||.+.+
T Consensus 236 ~~~~lIiDEAHnL~d 250 (289)
T smart00489 236 KDSIVIFDEAHNLDN 250 (289)
T ss_pred cccEEEEeCccChHH
Confidence 357999999998853
No 255
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=63.95 E-value=19 Score=36.96 Aligned_cols=75 Identities=28% Similarity=0.336 Sum_probs=58.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-CC---CeeeecCCCCHHHHHHHHHHhhcCCceEEEEc------cccccccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-GI---QNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT------CAFGMGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-~~---~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT------~~~~~GiD~p~ 299 (451)
.++++|+..+|+--+.+-++.+.+. |+ .+..+.|..++++|.... .+ .+|+||| |+.+-=+|..+
T Consensus 57 ~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w---~~--~kVfvaTPQvveNDl~~Grid~~d 131 (542)
T COG1111 57 FGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELW---AK--KKVFVATPQVVENDLKAGRIDLDD 131 (542)
T ss_pred cCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHH---hh--CCEEEeccHHHHhHHhcCccChHH
Confidence 4458999999999998888888765 44 577999999999998754 33 3699999 45555589999
Q ss_pred ccEEEEeCCC
Q psy10478 300 VRCVIHYGAP 309 (451)
Q Consensus 300 v~~VI~~~~p 309 (451)
+.++|.-...
T Consensus 132 v~~lifDEAH 141 (542)
T COG1111 132 VSLLIFDEAH 141 (542)
T ss_pred ceEEEechhh
Confidence 9998864443
No 256
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=63.32 E-value=11 Score=30.16 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.4
Q ss_pred CCCcEEEEcCCh--hHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTK--VICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~--~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
.+.+++|||++- ..+..++..|...|+.+..+.|++.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 678899999975 3688889999999998888999874
No 257
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.93 E-value=15 Score=39.40 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=29.5
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
++.+++||||+|.|.. .....|.+.++..+..-+++|..|-+..+...|.
T Consensus 123 gr~KViIIDEah~Ls~------~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN------HAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred CCceEEEEEChHhcCH------HHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 4688999999999864 2334444444444544455555555444444443
No 258
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=62.70 E-value=98 Score=28.81 Aligned_cols=99 Identities=10% Similarity=0.083 Sum_probs=67.2
Q ss_pred CCCcEEEEcCC------------hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc---CCceEEEEccccccc
Q psy10478 230 FEGSTIIYCPT------------KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK---DLIKVVVATCAFGMG 294 (451)
Q Consensus 230 ~~~~~iVF~~t------------~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~---g~~~iLVaT~~~~~G 294 (451)
+.+.+||+.|. ...++.+++.|++.|+.|. .+.+++..+-.+.++.|.+ ....++|+. .++.|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 45566676663 5779999999999999875 5778888888888888885 334444444 67788
Q ss_pred cccCCccEEEEeC-CCCCHHHHHHHhc--ccC-CCCCCcEEEEE
Q psy10478 295 IDKPDVRCVIHYG-APKDLSAYYQEIG--RAG-RDGLSSVCYTF 334 (451)
Q Consensus 295 iD~p~v~~VI~~~-~p~s~~~y~Qr~G--Rag-R~g~~g~~i~l 334 (451)
.. +.++-.| .+-++.+.++... ++- -.|++...++-
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kPKl~~iq 125 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQ 125 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhccCCCccccCCCcEEEEE
Confidence 65 6677666 5567777877775 332 22455544443
No 259
>KOG0350|consensus
Probab=62.30 E-value=22 Score=36.52 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=58.2
Q ss_pred HHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHH-HHHHHHHHhhcCCceEEEEccc----
Q psy10478 220 LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLK-QRKEIHGLFVKDLIKVVVATCA---- 290 (451)
Q Consensus 220 L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~-~R~~~~~~f~~g~~~iLVaT~~---- 290 (451)
+.+++....-+.-+++|.++++.-+-+++..+... |..|....|.-+-+ |-.+....-...+++|||+|+.
T Consensus 204 IVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVD 283 (620)
T KOG0350|consen 204 IVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVD 283 (620)
T ss_pred HHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHH
Confidence 34444443234568999999999999999999875 55666666654432 2222233333456799999963
Q ss_pred ---cccccccCCccEEEE
Q psy10478 291 ---FGMGIDKPDVRCVIH 305 (451)
Q Consensus 291 ---~~~GiD~p~v~~VI~ 305 (451)
...|+|+.+.++.|.
T Consensus 284 Hl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 284 HLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred hccCCCCcchhhceEEEe
Confidence 367999999998774
No 260
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=62.09 E-value=13 Score=29.22 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=32.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~~ 267 (451)
.+.++++||++-..+...+..|.+.|+. +..+.||+..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 5778999999988889999999999885 7788998753
No 261
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=61.82 E-value=15 Score=29.35 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=31.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC--eeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ--NRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~--v~~~h~~l~~ 267 (451)
.+.+++|||.+-..+...+..|...|+. +..+.||+..
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 4578999999988888889999999984 7888999753
No 262
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=61.59 E-value=20 Score=29.70 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=31.8
Q ss_pred CCCCcEEEEcC-ChhHHHHHHHHHHHCCCCeeeecCCCCH
Q psy10478 229 QFEGSTIIYCP-TKVICEKVCDVLSRNGIQNRPYHAHISL 267 (451)
Q Consensus 229 ~~~~~~iVF~~-t~~~~~~l~~~L~~~~~~v~~~h~~l~~ 267 (451)
.+..+++|||. +-..+...+..|+..|+.+..+.||+..
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 36788999997 4566778888888889999999999753
No 263
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=61.43 E-value=9.5 Score=29.83 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=31.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
...+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 6778999999877788888999999976 778888864
No 264
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=61.21 E-value=52 Score=29.12 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=43.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC--CCCeeeecCCCCHHHHHHHHHHhhcCCceEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN--GIQNRPYHAHISLKQRKEIHGLFVKDLIKVV 285 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~--~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iL 285 (451)
.+.++-++-.+...++.+++.|++. ++.+..+||..++++...+.+.......++|
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 4567777777788889999999876 6776677999988888888888877665554
No 265
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=61.17 E-value=23 Score=27.13 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=31.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.+++|||++-..+...+..|...|+. +..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 6789999999999999999999999874 777888763
No 266
>PF13173 AAA_14: AAA domain
Probab=61.11 E-value=6.1 Score=32.73 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=21.8
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEE
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVT 173 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lS 173 (451)
+-.+|+|||+|.+.+|. .....+ ....++.++++.+
T Consensus 61 ~~~~i~iDEiq~~~~~~----~~lk~l---~d~~~~~~ii~tg 96 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWE----DALKFL---VDNGPNIKIILTG 96 (128)
T ss_pred CCcEEEEehhhhhccHH----HHHHHH---HHhccCceEEEEc
Confidence 46789999999997654 333333 3333455555443
No 267
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=61.06 E-value=13 Score=28.88 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=31.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
...++++||++-..+...+..|.+.|+ .+..++|++.
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 567899999998888889999998877 5777899864
No 268
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.29 E-value=17 Score=38.91 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=28.2
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVI 181 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~ 181 (451)
++.+++||||+|.++. ..+..+.+..+..|+..++.|.+|-+....
T Consensus 123 g~~KV~IIDEvh~Ls~------~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 123 GRFKVFMIDEVHMLTN------TAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCceEEEEEChhhCCH------HHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 4688999999999864 234445444455555445555556544443
No 269
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=60.20 E-value=39 Score=37.66 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=46.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH----CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR----NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~----~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
.+..+.|.++|..-|.+.++++.. .|+.+..++|+++..+|.... ..+|+++|+.
T Consensus 122 ~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 566899999999999888888775 388999999999998886655 4689999964
No 270
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=59.79 E-value=51 Score=32.74 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=68.7
Q ss_pred HHHHHHHHhhccCCCCcEEEEcC---------ChhHHHHHHHHHHHCCCCee--eecCCCCHHH-HHHHHHHhhcCCceE
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCP---------TKVICEKVCDVLSRNGIQNR--PYHAHISLKQ-RKEIHGLFVKDLIKV 284 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~---------t~~~~~~l~~~L~~~~~~v~--~~h~~l~~~~-R~~~~~~f~~g~~~i 284 (451)
++.|.+.+.. ...+.+|.|| |+++.+.+.+...++|+.+. -+|+++--.. +-........+-.+.
T Consensus 147 ~~~LE~~~~~---~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~ 223 (388)
T COG1168 147 FDALEKAFVD---ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADN 223 (388)
T ss_pred HHHHHHHHhc---CCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcc
Confidence 4566665553 3458999998 78888889999999987765 4788775433 222222222232344
Q ss_pred EEEccccccccccCCccEE-EEeCCCCCHHHHHHHhcccCCCCC
Q psy10478 285 VVATCAFGMGIDKPDVRCV-IHYGAPKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 285 LVaT~~~~~GiD~p~v~~V-I~~~~p~s~~~y~Qr~GRagR~g~ 327 (451)
.++..+.+.+.|++.+.+- +...-+.....|..|+-|.++.|-
T Consensus 224 ~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~ 267 (388)
T COG1168 224 SITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGP 267 (388)
T ss_pred eEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCC
Confidence 4555566888999877653 233444455778888887777763
No 271
>KOG0298|consensus
Probab=59.07 E-value=17 Score=41.50 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=71.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCce-EEEEccccccccccCCccEEEEeCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIK-VVVATCAFGMGIDKPDVRCVIHYGA 308 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~-iLVaT~~~~~GiD~p~v~~VI~~~~ 308 (451)
...++|||+.--..-+-+...+...++.....-+ .+.-...+..|.+ ++ .++-+...+-|+|+-+..+|+..++
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 6689999998777666666666655554332222 2233445555655 44 5667889999999999999999999
Q ss_pred CCCHHHHHHHhcccCCCCCCcE
Q psy10478 309 PKDLSAYYQEIGRAGRDGLSSV 330 (451)
Q Consensus 309 p~s~~~y~Qr~GRagR~g~~g~ 330 (451)
-.+...-.|.+||.-|-|+.-.
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccc
Confidence 9999999999999999997643
No 272
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=58.25 E-value=17 Score=28.03 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=29.2
Q ss_pred CCCcEEEEcCC--hhHHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPT--KVICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t--~~~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
+..+++|||.+ +..+...+..|...|+ .+..+.||+.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 46789999998 4557788889998886 4777888874
No 273
>PLN02955 8-amino-7-oxononanoate synthase
Probab=58.02 E-value=42 Score=34.77 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=33.3
Q ss_pred CcEE-EEcCChhHHHHHHHHHHHCCCCee----------------eecCCCCHHHHHHHHHHhh
Q psy10478 232 GSTI-IYCPTKVICEKVCDVLSRNGIQNR----------------PYHAHISLKQRKEIHGLFV 278 (451)
Q Consensus 232 ~~~i-VF~~t~~~~~~l~~~L~~~~~~v~----------------~~h~~l~~~~R~~~~~~f~ 278 (451)
.+++ |++.+...+..+++.|.+.|+-+. .+++..+.++-+...+.+.
T Consensus 393 sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~ 456 (476)
T PLN02955 393 SPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALS 456 (476)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHH
Confidence 3443 677888889999999999876432 3667777777776666654
No 274
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=57.69 E-value=16 Score=29.52 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=31.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
++.++++||++-..+..++..|+..|+. +..|.|++.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 6778999999988888899999999984 778888763
No 275
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.14 E-value=20 Score=37.63 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=24.6
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~ 177 (451)
++.+++||||+|.+.. ..+..+.+..+.+|+.-.+.+.+|-+
T Consensus 118 ~~~kV~iIDE~~~ls~------~a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 118 GRFKVYLIDEVHMLSG------HSFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred CCcEEEEEEChHhcCH------HHHHHHHHHHhccCCCeEEEEEECCh
Confidence 4688999999999864 23344444445555433344444533
No 276
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.96 E-value=17 Score=37.55 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.4
Q ss_pred CcccEEEEcccccccc
Q psy10478 130 PRIVLIAIDEAHCVSQ 145 (451)
Q Consensus 130 ~~l~~vViDEah~~~~ 145 (451)
++..++||||||.+..
T Consensus 120 g~~KV~IIDEah~Ls~ 135 (484)
T PRK14956 120 GKYKVYIIDEVHMLTD 135 (484)
T ss_pred CCCEEEEEechhhcCH
Confidence 4678999999999864
No 277
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=56.38 E-value=16 Score=39.92 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=26.3
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
++.+++||||+|.|... .+..|.+.++..+..-.++|++|-...+
T Consensus 118 gr~KVIIIDEah~LT~~------A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH------AFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred CCceEEEEeChhhCCHH------HHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 46889999999998642 2333333344444444455555544433
No 278
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=56.36 E-value=71 Score=27.97 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC--CCCeee-ecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN--GIQNRP-YHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~--~~~v~~-~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
+.+..+.+.... .+.++-++-.+.+.++.+++.|++. ++.+.. +|+.+..++...+++.......++++
T Consensus 33 dl~~~ll~~~~~---~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 33 DLMPALLELAAQ---KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred HHHHHHHHHHHH---cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 344444444433 5678888888888899999888876 666655 78888888877788888777666553
No 279
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=55.89 E-value=20 Score=39.79 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=27.1
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPV 179 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~ 179 (451)
++.+++||||+|.|.. .....|.++++..+..-+++|..|-...
T Consensus 119 ~~~KV~IIDEad~lt~------~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP------QGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCceEEEEechhhcCH------HHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 4788999999999964 2344455555555544444444454433
No 280
>PRK08181 transposase; Validated
Probab=55.67 E-value=19 Score=34.26 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.3
Q ss_pred cCcccEEEEccccccc
Q psy10478 129 IPRIVLIAIDEAHCVS 144 (451)
Q Consensus 129 l~~l~~vViDEah~~~ 144 (451)
+.+.+++||||.+...
T Consensus 165 l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 165 LDKFDLLILDDLAYVT 180 (269)
T ss_pred HhcCCEEEEecccccc
Confidence 4579999999999764
No 281
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=55.57 E-value=13 Score=30.52 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=22.3
Q ss_pred ccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeC
Q psy10478 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATA 176 (451)
Q Consensus 132 l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~ 176 (451)
..+|||||+|.+. . ...+..|..+.. .++.+ +.+++|+
T Consensus 88 ~~~lviDe~~~l~--~---~~~l~~l~~l~~-~~~~~-vvl~G~~ 125 (131)
T PF13401_consen 88 VVLLVIDEADHLF--S---DEFLEFLRSLLN-ESNIK-VVLVGTP 125 (131)
T ss_dssp EEEEEEETTHHHH--T---HHHHHHHHHHTC-SCBEE-EEEEESS
T ss_pred CeEEEEeChHhcC--C---HHHHHHHHHHHh-CCCCe-EEEEECh
Confidence 3689999999974 1 455555555443 22333 4555554
No 282
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=55.53 E-value=1e+02 Score=28.76 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=60.8
Q ss_pred CCCcEEEEcCC-----------hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC----CceEEEEccccccc
Q psy10478 230 FEGSTIIYCPT-----------KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD----LIKVVVATCAFGMG 294 (451)
Q Consensus 230 ~~~~~iVF~~t-----------~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g----~~~iLVaT~~~~~G 294 (451)
+.+-+||+.|. ...++.|++.|++.|+.|. .+-+++..+-.+.++.|.+. ..+++|+. .++.|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 56667787775 4689999999999999775 57788988888888888763 34555555 67888
Q ss_pred cccCCccEEEEeCC-CCCHHHHHHHh
Q psy10478 295 IDKPDVRCVIHYGA-PKDLSAYYQEI 319 (451)
Q Consensus 295 iD~p~v~~VI~~~~-p~s~~~y~Qr~ 319 (451)
. ...++-.|- +-++.+.....
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 3 356665554 44666666665
No 283
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=55.50 E-value=68 Score=28.14 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC--CCCee-eecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN--GIQNR-PYHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~--~~~v~-~~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
+.+..+...... .+.++-++-.+-+.++.++..|++. ++.+. .+||.++.++...+.+.......++|+
T Consensus 35 dl~~~l~~~~~~---~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 35 DLFPDLLRRAEQ---RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 344444444433 5677788888888889999999887 66665 566778888899999988877766554
No 284
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=55.27 E-value=24 Score=30.65 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=32.6
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICT 186 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~ 186 (451)
+..+++||||||.|.. .....|.+.++.+|..-++.|+++-+..+...+..
T Consensus 101 ~~~KviiI~~ad~l~~------~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE------EAQNALLKTLEEPPENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp SSSEEEEEETGGGS-H------HHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT
T ss_pred CCceEEEeehHhhhhH------HHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh
Confidence 3688999999998853 33445555666677666677777766665555543
No 285
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=54.04 E-value=18 Score=28.41 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=30.5
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
+.++++||.+-..+...+..|...|+. +..+.||+.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 568999999888888889999999985 778889874
No 286
>KOG0342|consensus
Probab=53.86 E-value=44 Score=34.32 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=40.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+-.+||.|+|++-|-+.+..+++. ++.+..+-||.. |..-.+.+.. .+++||||+
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~---~~~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNN---FSVEADKLVK-GCNILIATP 213 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCcc---chHHHHHhhc-cccEEEeCC
Confidence 5667999999999988877666543 566777777754 3333344455 789999996
No 287
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=53.57 E-value=1.4e+02 Score=29.56 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.5
Q ss_pred CcccEEEEcccccccc
Q psy10478 130 PRIVLIAIDEAHCVSQ 145 (451)
Q Consensus 130 ~~l~~vViDEah~~~~ 145 (451)
...++|||||||.+..
T Consensus 82 ~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRT 97 (352)
T ss_pred CcCCEEEEehhHhhhh
Confidence 4799999999999987
No 288
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=53.21 E-value=14 Score=41.47 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=42.3
Q ss_pred CceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCC
Q psy10478 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRD 325 (451)
Q Consensus 281 ~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~ 325 (451)
..+.|++-+++.+|.|.|++-.+.-+....|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 678999999999999999999999999999999999999999885
No 289
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=52.57 E-value=50 Score=26.45 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=41.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCC---CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNG---IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~---~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
..++++|.|++...+++....+.... ..+..+++........ ........++++|.-
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 56899999999999998888777654 6788888876655444 223456678888754
No 290
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=52.15 E-value=39 Score=26.49 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=28.5
Q ss_pred CCCCcEEEEcCChhHHHHHHHH-----HHHCCC-CeeeecCCCC
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDV-----LSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~-----L~~~~~-~v~~~h~~l~ 266 (451)
.....+|+||.+-......+.. |...|+ .+..+.||+.
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 3667799999766666665555 788887 8889999864
No 291
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=52.02 E-value=38 Score=28.82 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=31.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
...+++|+|.+-..+..++..|...|+ ++..+.||+.
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 567899999998888888889998887 7899999974
No 292
>KOG1001|consensus
Probab=51.84 E-value=23 Score=38.42 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=33.0
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcC
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLM 189 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~ 189 (451)
.+-.+|+||||.+..... ..+. ....+.....-.+|+|+.....+++...+.
T Consensus 254 ~w~Riildea~~ikn~~t---q~~~----a~~~L~a~~RWcLtgtPiqn~~~~lysl~~ 305 (674)
T KOG1001|consen 254 KWLRIVLDEAHTIKNKDT---QIFK----AVCQLDAKYRWCLTGTPIQNNLDELYSLFK 305 (674)
T ss_pred eEEEEEeccccccCCcch---Hhhh----hheeeccceeeeecCChhhhhHHHHHHHHH
Confidence 466899999999986441 1221 112223444568899998887777665544
No 293
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=51.68 E-value=39 Score=27.38 Aligned_cols=37 Identities=5% Similarity=0.108 Sum_probs=31.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
+..++++||++-..+...+..|...|+. +..+.||+.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 6678999999988899999999999975 666888875
No 294
>PLN03025 replication factor C subunit; Provisional
Probab=51.22 E-value=26 Score=34.18 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=27.9
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
+.+++||||+|.+.... -..+....+.+++...+.++++........+.
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 57899999999985422 22333334444544455666665444433333
No 295
>PLN02160 thiosulfate sulfurtransferase
Probab=51.18 E-value=25 Score=29.57 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=32.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
++.++++||.+=..+...+..|...|+. +..|.||+.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 5678999999999999999999999985 777888874
No 296
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=51.07 E-value=66 Score=30.42 Aligned_cols=88 Identities=11% Similarity=0.148 Sum_probs=54.7
Q ss_pred HHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccC-
Q psy10478 220 LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP- 298 (451)
Q Consensus 220 L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p- 298 (451)
+.+++.....+.-++||++.....+-...+.+++..-.+..+.|..... -..+ +...++.+.++-..+|..++
T Consensus 51 IskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~ED-p~~i-----~~~aDi~~~~D~~~~G~~i~~ 124 (275)
T PF12683_consen 51 ISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHED-PEVI-----SSAADIVVNPDEISRGYTIVW 124 (275)
T ss_dssp HHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S--HHHH-----HHHSSEEEE--HHHHHHHHHH
T ss_pred HHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcCC-HHHH-----hhccCeEeccchhhccHHHHH
Confidence 3344333334778999999999988888888888877788888775432 1111 23358999999999999886
Q ss_pred -----CccEEEEeCCCCCHH
Q psy10478 299 -----DVRCVIHYGAPKDLS 313 (451)
Q Consensus 299 -----~v~~VI~~~~p~s~~ 313 (451)
..+..||+.+|..++
T Consensus 125 ~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 125 AAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp HHHHTT-S-EEEEEETTGGG
T ss_pred HHHHcCCceEEEEechhhcc
Confidence 567889999998543
No 297
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.03 E-value=33 Score=35.67 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=29.2
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
++.+++||||+|.+.. ..+..+.+..+.+|..-++.+.+|-.......+
T Consensus 115 ~~~KVvIIDEah~Ls~------~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI 163 (491)
T PRK14964 115 SKFKVYIIDEVHMLSN------SAFNALLKTLEEPAPHVKFILATTEVKKIPVTI 163 (491)
T ss_pred CCceEEEEeChHhCCH------HHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHH
Confidence 4688999999998864 234445445555554444555556544443333
No 298
>COG1204 Superfamily II helicase [General function prediction only]
Probab=51.01 E-value=46 Score=36.75 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=52.5
Q ss_pred HHhhccCCCCcEEEEcCChhHHHHHHHHHH---HCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc----ccccc-
Q psy10478 223 LTNFENQFEGSTIIYCPTKVICEKVCDVLS---RNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC----AFGMG- 294 (451)
Q Consensus 223 ~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~---~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~----~~~~G- 294 (451)
+++...+.+++++-.||++.-|++.++.+. ..|++|..++|+++..... -++.+|+|+|. .+.|-
T Consensus 68 i~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~-------l~~~~ViVtT~EK~Dsl~R~~ 140 (766)
T COG1204 68 ILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDER-------LARYDVIVTTPEKLDSLTRKR 140 (766)
T ss_pred HHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchhh-------hccCCEEEEchHHhhHhhhcC
Confidence 333333246899999999999999999888 6799999999998743311 25678999993 22222
Q ss_pred cc-cCCccEEE
Q psy10478 295 ID-KPDVRCVI 304 (451)
Q Consensus 295 iD-~p~v~~VI 304 (451)
.+ +.+|++||
T Consensus 141 ~~~~~~V~lvV 151 (766)
T COG1204 141 PSWIEEVDLVV 151 (766)
T ss_pred cchhhcccEEE
Confidence 22 23677775
No 299
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=50.95 E-value=36 Score=40.37 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=54.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH----------------CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc---
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR----------------NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA--- 290 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~----------------~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~--- 290 (451)
.+.++|+.++++.-+..+.+.|+. .++.+..+||+.+..+|.+.++ ...+|||+|.-
T Consensus 36 ~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~ 111 (1490)
T PRK09751 36 KTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLY 111 (1490)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHH
Confidence 356899999999999888887752 2578889999999998876443 46689999952
Q ss_pred --cc-cc-cccCCccEEEE
Q psy10478 291 --FG-MG-IDKPDVRCVIH 305 (451)
Q Consensus 291 --~~-~G-iD~p~v~~VI~ 305 (451)
+. .+ ..+.++++||.
T Consensus 112 ~LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 112 LMLTSRARETLRGVETVII 130 (1490)
T ss_pred HHHhhhhhhhhccCCEEEE
Confidence 22 22 35788999874
No 300
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=50.58 E-value=23 Score=28.78 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=31.0
Q ss_pred CCCcEEEEcCC-hhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPT-KVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t-~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.++++||++ -..+...+..|...|+. +..+.|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 67789999999 57888888999999976 888888874
No 301
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.24 E-value=34 Score=36.45 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=27.1
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
++.+++||||+|.+.. ..+..|.+..+..|..-++.+..|-+..+
T Consensus 117 ~~~KVvIIDEah~Lt~------~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 117 SRYRIFIVDEAHMVTT------AGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred CCceEEEEECCCcCCH------HHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 4688999999999864 23444544555555444444444544433
No 302
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=50.13 E-value=24 Score=38.00 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=25.9
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPV 179 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~ 179 (451)
++.+++||||+|++.. .....|.+..+.+|+.-++++..|-+..
T Consensus 118 g~~KV~IIDEah~Ls~------~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 118 GRFKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred CCCEEEEEechHhCCH------HHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 4688999999999864 2334444444554443344444444333
No 303
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=50.07 E-value=3.9 Score=38.81 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR 115 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~ 115 (451)
++..+...++.+..++....+. +|+|+|...+.-.. ++..+..-....+.
T Consensus 146 Glsv~~~~~~~~~~~r~~~Y~~------dI~Y~t~~~~~fD~-Lrd~~~~~~~~~~~----------------------- 195 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREAYAA------DIVYGTNSEFGFDY-LRDNLALSKNEQVQ----------------------- 195 (266)
T ss_dssp T--EEEEETTTEHHHHHHHHHS------SEEEEEHHHHHHHH-HHHTT-SSGGG--S-----------------------
T ss_pred hhccccCccccCHHHHHHHHhC------cccccccchhhHHH-HHHHHhhccchhcc-----------------------
Q ss_pred cCCCCchhhhccccCcccEEEEccccccc
Q psy10478 116 LPLPDVPILFLSRIPRIVLIAIDEAHCVS 144 (451)
Q Consensus 116 ~~~~~~~~~~l~~l~~l~~vViDEah~~~ 144 (451)
..+.++||||+|.++
T Consensus 196 --------------r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 196 --------------RGFDFAIVDEVDSIL 210 (266)
T ss_dssp --------------SSSSEEEECTHHHHT
T ss_pred --------------CCCCEEEEeccceEE
No 304
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=49.94 E-value=9.5 Score=39.73 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.1
Q ss_pred CcccEEEEccccccccCC
Q psy10478 130 PRIVLIAIDEAHCVSQWG 147 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g 147 (451)
++.+..||||+|+++..+
T Consensus 118 ~ryKVyiIDEvHMLS~~a 135 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQA 135 (515)
T ss_pred ccceEEEEecHHhhhHHH
Confidence 579999999999997533
No 305
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=49.57 E-value=1.8e+02 Score=25.50 Aligned_cols=134 Identities=10% Similarity=0.048 Sum_probs=65.5
Q ss_pred EEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecch
Q psy10478 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQD 214 (451)
Q Consensus 135 vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~ 214 (451)
.|+|-...-...=.+-+..+.. +.. .+.++...|-|..|+....+++.+++........+. ...+-.......
T Consensus 35 ~v~D~~g~~v~lypdv~~iL~~---L~~--~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~--~~~F~~~eI~~g 107 (169)
T PF12689_consen 35 VVVDSRGEEVSLYPDVPEILQE---LKE--RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPL--IEYFDYLEIYPG 107 (169)
T ss_dssp -EEETT--EE---TTHHHHHHH---HHH--CT--EEEEE--S-HHHHHHHHHHTT-C------------CCECEEEESSS
T ss_pred EEEeCCCCEEEeCcCHHHHHHH---HHH--CCCEEEEEECCCChHHHHHHHHhcCCCccccccccc--hhhcchhheecC
Confidence 6777665543311112223333 332 688899999999999999999999887211111111 111111233335
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK 279 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~ 279 (451)
.+...+.++.+...-+....|.|=+-....+.+. +.|+.+.....||+.+.=++-++.|++
T Consensus 108 sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~----~lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 108 SKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVS----KLGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp -HHHHHHHHHHHH---GGGEEEEES-HHHHHHHH----TTT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhcCCChhHEEEecCchhcceeeE----ecCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 6777777776665445566666666555555543 378888888889998888888887764
No 306
>KOG0389|consensus
Probab=49.50 E-value=70 Score=34.96 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=45.0
Q ss_pred HhhccCCCCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcC--CceEEEEccccccc
Q psy10478 224 TNFENQFEGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKD--LIKVVVATCAFGMG 294 (451)
Q Consensus 224 l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g--~~~iLVaT~~~~~G 294 (451)
+.... ..++-||.|++--- -.||++. .+.+..|||. +.+|.++-..+..+ .++|||+|=-+..|
T Consensus 442 Lkq~g-~~gpHLVVvPsSTl----eNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 442 LKQIG-NPGPHLVVVPSSTL----ENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred HHHcC-CCCCcEEEecchhH----HHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 33333 47888999987543 3333332 4679999997 58999999998876 78899999544433
No 307
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.80 E-value=35 Score=36.79 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=25.8
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
++.+++||||+|++... ....+.+.....++.-.+.+++|-+...
T Consensus 117 gk~KV~IIDEVh~LS~~------A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH------SFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred CCcEEEEEechHhcCHH------HHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 46789999999988642 2333444444444433444555544433
No 308
>KOG0388|consensus
Probab=48.74 E-value=17 Score=38.90 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=35.0
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCC
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~ 193 (451)
++.+.|+|||+.+-.-. ...+..|..+ .-.-.+++|+|+-....+++-..|..--|
T Consensus 695 KWQYMILDEAQAIKSSs---S~RWKtLLsF----~cRNRLLLTGTPIQNsMqELWALLHFIMP 750 (1185)
T KOG0388|consen 695 KWQYMILDEAQAIKSSS---SSRWKTLLSF----KCRNRLLLTGTPIQNSMQELWALLHFIMP 750 (1185)
T ss_pred hhhheehhHHHHhhhhh---hhHHHHHhhh----hccceeeecCCccchHHHHHHHHHHHHhh
Confidence 68899999999885322 1223333222 23446899999987776666555544333
No 309
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=48.29 E-value=91 Score=33.83 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=28.7
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
..+++|+|||+.+.. +.+..+.-+... .+.+++++|.+-+...
T Consensus 294 ~~DLLIVDEAAfI~~------~~l~aIlP~l~~-~~~k~IiISS~~~~~s 336 (752)
T PHA03333 294 NPDLVIVDEAAFVNP------GALLSVLPLMAV-KGTKQIHISSPVDADS 336 (752)
T ss_pred CCCEEEEECcccCCH------HHHHHHHHHHcc-CCCceEEEeCCCCcch
Confidence 579999999998743 344444333333 4788888888865443
No 310
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=47.82 E-value=42 Score=29.65 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=24.3
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEee
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTAT 175 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT 175 (451)
+...++||||+|.+.. .....+....+..++..++.+.++
T Consensus 95 ~~~kviiide~~~l~~------~~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 95 SGRRVVIIEDAERMNE------AAANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred CCeEEEEEechhhhCH------HHHHHHHHHhcCCCCCeEEEEEEC
Confidence 4678999999998853 223334444455554445555554
No 311
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.76 E-value=32 Score=38.45 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=26.5
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVI 181 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~ 181 (451)
++.+++||||||.|.. .....|.+.++.+|..-++++..|-+..+.
T Consensus 118 gk~KViIIDEAh~LT~------eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR------SSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred CCcEEEEEechHhcCH------HHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 4688999999999853 334444444454444333444444444433
No 312
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=47.54 E-value=33 Score=34.07 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=25.6
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
++..++||||||.+.. .....|.+..+.+|...++++.++.+.
T Consensus 140 g~~rVviIDeAd~l~~------~aanaLLk~LEEpp~~~~fiLit~~~~ 182 (351)
T PRK09112 140 GNWRIVIIDPADDMNR------NAANAILKTLEEPPARALFILISHSSG 182 (351)
T ss_pred CCceEEEEEchhhcCH------HHHHHHHHHHhcCCCCceEEEEECChh
Confidence 5688999999998853 223334444455555445444444443
No 313
>KOG0334|consensus
Probab=47.30 E-value=50 Score=37.01 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=44.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+.=+||.|+|++.+.++.+++++. ++.+...+|+....+. +...++| ..|+|||.
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~q---iaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQ---IAELKRG-AEIVVCTP 496 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHH---HHHHhcC-CceEEecc
Confidence 4555899999999999998887754 8889999998775544 5566678 88999994
No 314
>PRK00254 ski2-like helicase; Provisional
Probab=47.27 E-value=60 Score=35.69 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=49.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH---CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-cccCCc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR---NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGMG-IDKPDV 300 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~---~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v 300 (451)
.+.++|+.++++.-+.+.++.+.. .|+.+..++|+.+...+ + .+..+|+|+|. .+..+ ..+.++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~------~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE------W-LGKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh------h-hccCCEEEEcHHHHHHHHhCCchhhhcC
Confidence 467899999999999999887764 47889999999875422 1 24578999994 22222 235677
Q ss_pred cEEEE
Q psy10478 301 RCVIH 305 (451)
Q Consensus 301 ~~VI~ 305 (451)
++||.
T Consensus 140 ~lvVi 144 (720)
T PRK00254 140 KLVVA 144 (720)
T ss_pred CEEEE
Confidence 77763
No 315
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.15 E-value=35 Score=36.59 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=26.6
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVI 181 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~ 181 (451)
++..+|||||+|.+.. .....|....+..+...++++.+|-+....
T Consensus 118 g~~kVIIIDEad~Lt~------~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 118 GRYKVFIIDEAHMLTR------EAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEEEChHhCCH------HHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 4678999999998852 233444444444444444555555444433
No 316
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=47.02 E-value=45 Score=26.37 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=31.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
...+++|+|.+-..+...+..|+..|+. +..+.|++.
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 6678999999888888889999999985 777888874
No 317
>KOG0346|consensus
Probab=46.80 E-value=48 Score=33.66 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=47.5
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHC------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccccc
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRN------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGMGID 296 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~GiD 296 (451)
..+..++|.++|++-|.+++..+.+. .+.+.-+.++|+..+.. .+..+...|+|+|+ .++.|+.
T Consensus 91 e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~~ll~~~~~~~~ 165 (569)
T KOG0346|consen 91 EQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDLPDIVVATPAKLLRHLAAGVL 165 (569)
T ss_pred cccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccCCCeEEeChHHHHHHHhhccc
Confidence 45678999999999999998888764 35566667777765544 45567889999996 4666763
No 318
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=46.68 E-value=37 Score=27.14 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=30.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
.+.++++||++-..+...+..|.+.|+....+.||+.
T Consensus 59 ~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 59 KNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 4567999999988888899999999987666667754
No 319
>PRK02362 ski2-like helicase; Provisional
Probab=46.59 E-value=48 Score=36.55 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=49.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC---CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-cccCCc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN---GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGMG-IDKPDV 300 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~---~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v 300 (451)
.++++++.+|+++-+.+.++.+... |+.+..++|+.+.... . -+..+|+|||. .+..+ ..+.++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~--l~~~~IiV~Tpek~~~llr~~~~~l~~v 138 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----W--LGDNDIIVATSEKVDSLLRNGAPWLDDI 138 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----c--cCCCCEEEECHHHHHHHHhcChhhhhhc
Confidence 5789999999999999999888865 7889999998764331 1 14568999994 22222 224577
Q ss_pred cEEEE
Q psy10478 301 RCVIH 305 (451)
Q Consensus 301 ~~VI~ 305 (451)
++||.
T Consensus 139 ~lvVi 143 (737)
T PRK02362 139 TCVVV 143 (737)
T ss_pred CEEEE
Confidence 77764
No 320
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=46.56 E-value=37 Score=25.25 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
...++|+||.+...+..++..|...|+ .+..+-||+.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 778999999998899999999999974 4667777764
No 321
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=46.53 E-value=74 Score=35.60 Aligned_cols=67 Identities=6% Similarity=0.000 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcCChhHH----HHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCPTKVIC----EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~t~~~~----~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
....|..++... .|.++-|.+++.--| +.+...+...|+.+..+.+++++.+|+.+.. .+|+.+|..
T Consensus 110 LvA~l~a~l~al--~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 110 LVGTLAVYLNAL--SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred HHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 344455555544 788898999886544 5555555567999999999999999998886 789999975
No 322
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=46.47 E-value=1.1e+02 Score=22.02 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=37.1
Q ss_pred EEEEc-CChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC-CceEEE
Q psy10478 234 TIIYC-PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD-LIKVVV 286 (451)
Q Consensus 234 ~iVF~-~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g-~~~iLV 286 (451)
+.||. ++...|..+..+|.+.++....+.-...++.+++..+..... .+++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 45665 567889999999999999988888877766666655444322 444444
No 323
>PRK06893 DNA replication initiation factor; Validated
Probab=46.43 E-value=18 Score=33.41 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=29.0
Q ss_pred cCcccEEEEccccccccCCCCcHHHHHH-HHHhhccCCCCCEEEEEeeCChHHH
Q psy10478 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRC-LSELRLPLPDVPILAVTATATPVVI 181 (451)
Q Consensus 129 l~~l~~vViDEah~~~~~g~~fr~~~~~-l~~l~~~~~~~~~v~lSAT~~~~~~ 181 (451)
+.+.++++|||+|.+.... .+...+.. +..... .+.+++++|++.++...
T Consensus 89 ~~~~dlLilDDi~~~~~~~-~~~~~l~~l~n~~~~--~~~~illits~~~p~~l 139 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNE-EWELAIFDLFNRIKE--QGKTLLLISADCSPHAL 139 (229)
T ss_pred cccCCEEEEeChhhhcCCh-HHHHHHHHHHHHHHH--cCCcEEEEeCCCChHHc
Confidence 3568999999999875321 12222222 222221 24567788888877654
No 324
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=44.68 E-value=83 Score=34.98 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=44.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHH----HCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLS----RNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~----~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
.+.++-|.++|..-|.+-++++. ..|+.+..+.|+++..+|..... .+|+++|..
T Consensus 121 ~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 121 TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 56678899999877777666665 45899999999999999888753 689999953
No 325
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=43.91 E-value=38 Score=36.45 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=32.9
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhc
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSL 188 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l 188 (451)
+++++|||||+.+.. ..+..+.-+... .+.+++.+|.|-+......+...+
T Consensus 352 tfDLLIVDEAqFIk~------~al~~ilp~l~~-~n~k~I~ISS~Ns~~~sTSFL~nL 402 (738)
T PHA03368 352 DFNLLFVDEANFIRP------DAVQTIMGFLNQ-TNCKIIFVSSTNTGKASTSFLYNL 402 (738)
T ss_pred cccEEEEechhhCCH------HHHHHHHHHHhc-cCccEEEEecCCCCccchHHHHhh
Confidence 699999999998753 233333222222 288899999997665544444444
No 326
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=43.26 E-value=47 Score=33.55 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=30.7
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
++.+++||||+|.+... ....+.+..+.+|...++++++|-+......|.
T Consensus 116 ~~~kViiIDead~m~~~------aanaLLk~LEep~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 116 GRWRIVVIEDADRLTER------AANALLKAVEEPPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred CCcEEEEEechhhcCHH------HHHHHHHHhhcCCCCCeEEEEECChHHChHHHH
Confidence 46789999999998532 223344444555555666777766555544443
No 327
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=43.15 E-value=67 Score=29.70 Aligned_cols=72 Identities=11% Similarity=0.021 Sum_probs=41.4
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCee---eecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNR---PYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~---~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+.|.+++......++++++++... ..+.+.+.|++.|+.+. .|.............+.+.++.+++++-|+
T Consensus 104 ~e~L~~~~~~~~~~~~~vL~~rg~~-~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S 178 (240)
T PRK09189 104 GVRLAETVAAALAPTARLLYLAGRP-RAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYS 178 (240)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCc-ccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeC
Confidence 3445555443323566666666554 44899999999987643 454332222334555667777666555443
No 328
>PRK06526 transposase; Provisional
Probab=43.14 E-value=18 Score=34.05 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.2
Q ss_pred cCcccEEEEccccccc
Q psy10478 129 IPRIVLIAIDEAHCVS 144 (451)
Q Consensus 129 l~~l~~vViDEah~~~ 144 (451)
+.+.+++||||+|...
T Consensus 157 l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 157 LGRYPLLIVDEVGYIP 172 (254)
T ss_pred hccCCEEEEcccccCC
Confidence 4578999999999764
No 329
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=42.58 E-value=1.3e+02 Score=21.74 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=38.3
Q ss_pred cEEEEcC-ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy10478 233 STIIYCP-TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVA 287 (451)
Q Consensus 233 ~~iVF~~-t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVa 287 (451)
++.||.. +...|..+..+|.+.|+....+.=...+..+.++.+.-..+.+++++-
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 4556654 488899999999999999888877666666666555544445555543
No 330
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=42.36 E-value=1.3e+02 Score=29.51 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
......+.+++... ...+.-|||.+-..|--+...+.+.|+.
T Consensus 221 ~~g~~~~~~ll~~~--~~~ptAif~~nD~~Alg~l~~~~~~g~~ 262 (333)
T COG1609 221 ESGYEAAERLLARG--EPRPTAIFCANDLMALGALRALRELGLR 262 (333)
T ss_pred HHHHHHHHHHHhcC--CCCCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 34455666666543 2228999999999999999888887654
No 331
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=42.07 E-value=48 Score=35.24 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=25.4
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
++..++||||+|.+.. .....|......+|..-++.+.+|-+.
T Consensus 118 ~~~kViIIDE~~~Lt~------~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 118 AKYKVYIIDEVHMLST------GAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred CCeEEEEEECcccCCH------HHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 4688999999998864 233344444444444434455555443
No 332
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=42.06 E-value=28 Score=27.32 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=32.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCee-eecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNR-PYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~-~~h~~l~ 266 (451)
..++++|||.+-......+..|++.|+... .+.|++.
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 678999999999999999999999998776 6777764
No 333
>PRK05320 rhodanese superfamily protein; Provisional
Probab=41.97 E-value=35 Score=32.21 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=33.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~~ 267 (451)
.++++++||.+=..++..+..|++.|+. +..+.||+..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 5678999999999999999999999985 8888999743
No 334
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.85 E-value=48 Score=35.37 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=26.5
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
++.+++||||+|.+.. .....|.+.++.+|..-++.+.+|-+..+
T Consensus 118 ~~~KVvIIdev~~Lt~------~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 118 SRYKIFIIDEVHMLST------NAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred CCceEEEEEChhhCCH------HHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 4688999999998864 22344444455555443444444544433
No 335
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=41.85 E-value=47 Score=26.31 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=29.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
...++++||++-..+...+..|.+.|+.....-||+.
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 4567899999988899999999999987544447653
No 336
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=41.73 E-value=36 Score=29.56 Aligned_cols=49 Identities=20% Similarity=0.162 Sum_probs=28.3
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEe-eCChHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTA-TATPVVI 181 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSA-T~~~~~~ 181 (451)
+.++++|+||+=....+|.--...+ ..+....|...-+.+|+ .+|++..
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v---~~ll~~rp~~~evIlTGr~~p~~l~ 143 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEV---VDLLKAKPEDLELVLTGRNAPKELI 143 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHH---HHHHHcCCCCCEEEEECCCCCHHHH
Confidence 5799999999988877774222222 22333334444455555 4555443
No 337
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.09 E-value=57 Score=33.98 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=24.4
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEee
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTAT 175 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT 175 (451)
++..++||||||.+.. .....+......+|...++.+.+|
T Consensus 118 ~~~KVvIIDEad~Lt~------~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 118 GKYKVYIIDEAHMLTK------EAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred CCeeEEEEEChhhcCH------HHHHHHHHHHhcCCCCeEEEEEEC
Confidence 4678999999998853 233444444455554445555444
No 338
>KOG0741|consensus
Probab=41.07 E-value=53 Score=34.32 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=28.8
Q ss_pred CcccEEEEccccccccC---CCCcHHHHHH-HHHhh-ccCCCCCEEEEEeeCC
Q psy10478 130 PRIVLIAIDEAHCVSQW---GHDFRPSYRC-LSELR-LPLPDVPILAVTATAT 177 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~---g~~fr~~~~~-l~~l~-~~~~~~~~v~lSAT~~ 177 (451)
+.++.||+|+...+.+| |..|.....+ |..+. +.+|+-.-++.-+|-+
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS 649 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTS 649 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEeccc
Confidence 57999999999999998 4344444332 33333 3344444444444443
No 339
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=41.02 E-value=37 Score=34.95 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.5
Q ss_pred cCcccEEEEccccccc
Q psy10478 129 IPRIVLIAIDEAHCVS 144 (451)
Q Consensus 129 l~~l~~vViDEah~~~ 144 (451)
+.+.+++||||+|.+.
T Consensus 204 ~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 204 ICQNDVLIIDDVQFLS 219 (450)
T ss_pred hccCCEEEEecccccc
Confidence 3578999999999875
No 340
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=41.01 E-value=47 Score=34.96 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=24.8
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~ 177 (451)
++.+++||||||.+.. .....|......+|..-.+.+++|-+
T Consensus 116 ~~~KVvIIDEad~Lt~------~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 116 ARFKIFIIDEVHMLTK------EAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred CCeEEEEEECcccCCH------HHHHHHHHHHhhcCCceEEEEEECCh
Confidence 4688999999998854 23334444444445433444444543
No 341
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=40.46 E-value=1.3e+02 Score=25.73 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=45.5
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCC-----CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEc-----cccccc-cccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNG-----IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT-----CAFGMG-IDKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~-----~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT-----~~~~~G-iD~p~ 299 (451)
..++++.+++...+.++...+.... .....+++... ......+.++...++++| +.+..+ .+...
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~ 129 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSN 129 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhH
Confidence 5789999999999988888887654 33445555443 333445556666899998 333332 35555
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
++++|.
T Consensus 130 ~~~iIi 135 (201)
T smart00487 130 VDLVIL 135 (201)
T ss_pred CCEEEE
Confidence 666654
No 342
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=40.32 E-value=1.3e+02 Score=25.74 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=37.1
Q ss_pred cEEEEcCC-------hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHh
Q psy10478 233 STIIYCPT-------KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLF 277 (451)
Q Consensus 233 ~~iVF~~t-------~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f 277 (451)
+++||+.| ...+..+...|.+.++....+.=+++.+.++++.+.+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 46788876 8899999999999999988888888888888766544
No 343
>PRK01415 hypothetical protein; Validated
Probab=39.92 E-value=38 Score=31.81 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~~ 267 (451)
.++++++||.+=..++..+..|.+.|+. +..+.||+..
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 6778999999999999999999999985 8889998753
No 344
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.88 E-value=52 Score=30.57 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=25.1
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
.+.+.+++.. ...+..|||.+-..+..+.+.|.+.|+.
T Consensus 164 ~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 201 (269)
T cd06281 164 FDATRALLAL---PDRPTAIIAGGTQVLVGVLRALREAGLR 201 (269)
T ss_pred HHHHHHHHcC---CCCCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 3445555543 2345677888877787888888887653
No 345
>KOG0340|consensus
Probab=39.55 E-value=47 Score=32.76 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=42.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+-=.+||.+|++-+-++++.|... +.++..+.|+++.-.....+ ..+-.++|||.
T Consensus 74 ~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L----~~rPHvVvatP 133 (442)
T KOG0340|consen 74 YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAIL----SDRPHVVVATP 133 (442)
T ss_pred CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhc----ccCCCeEecCc
Confidence 3445799999999999999999865 57899999998754433333 45567888884
No 346
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=39.42 E-value=1.5e+02 Score=23.04 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=40.1
Q ss_pred cEEEEcCChhH-----HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccc-ccCCcc
Q psy10478 233 STIIYCPTKVI-----CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI-DKPDVR 301 (451)
Q Consensus 233 ~~iVF~~t~~~-----~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi-D~p~v~ 301 (451)
++++-|.+=-. +..+.+.|.+.|+.+...|...+.-+ ... ...+++++|.-+...+ |+|-+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~------~~~-~~~D~iv~t~~~~~~~~~ip~~~ 71 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIE------TYM-DGVHLICTTARVDRSFGDIPLVH 71 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHh------hhc-CCCCEEEECCccccccCCCCEEE
Confidence 68899986432 45666777888999888886654211 111 4468999987666655 355433
No 347
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.39 E-value=42 Score=34.82 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=12.8
Q ss_pred CcccEEEEccccccc
Q psy10478 130 PRIVLIAIDEAHCVS 144 (451)
Q Consensus 130 ~~l~~vViDEah~~~ 144 (451)
++..++||||+|.+.
T Consensus 116 ~~~kVvIIDE~h~Lt 130 (472)
T PRK14962 116 GKYKVYIIDEVHMLT 130 (472)
T ss_pred CCeEEEEEEChHHhH
Confidence 467899999999885
No 348
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=38.91 E-value=63 Score=30.82 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=36.7
Q ss_pred HHHHHHHhhc-cCCCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 218 ADLRKLTNFE-NQFEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 218 ~~L~~~l~~~-~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
+.|..++... ...+.++|+||++-..+-.++..|...|+. +..|.|++.
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 3444444332 235678999999988888899999988985 889999975
No 349
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=38.89 E-value=42 Score=29.18 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=30.2
Q ss_pred CCCcEEEEcCChh-HHHHHHHHHHHCCCC-eeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKV-ICEKVCDVLSRNGIQ-NRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~-~~~~l~~~L~~~~~~-v~~~h~~l~~ 267 (451)
++.++|+||.+-. .+...+..|...|+. +..+.||+..
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~a 154 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDG 154 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHH
Confidence 6789999999853 566788888999986 7788999753
No 350
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=38.24 E-value=40 Score=29.73 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=28.4
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPV 179 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~ 179 (451)
+.+++||+||+=....+|.--... +..+....|...-+.+|+.-.|.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~---v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEE---VVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHH---HHHHHHhCCCCCEEEEECCCCCH
Confidence 579999999999888877322222 22333344544456666654443
No 351
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=37.82 E-value=1.8e+02 Score=22.15 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCcEEEEcC------ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHH
Q psy10478 230 FEGSTIIYCP------TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275 (451)
Q Consensus 230 ~~~~~iVF~~------t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~ 275 (451)
...+++||.. ....|..+.+.|.+.++....+.=....+.+....+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 4579999975 578899999999999987766654444444444443
No 352
>KOG1131|consensus
Probab=37.49 E-value=2.5e+02 Score=29.49 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=63.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCCCC--e----eeecCCCCHHHHHHHHHHhh----cCCce--EEEEccccccccccC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNGIQ--N----RPYHAHISLKQRKEIHGLFV----KDLIK--VVVATCAFGMGIDKP 298 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~~~--v----~~~h~~l~~~~R~~~~~~f~----~g~~~--iLVaT~~~~~GiD~p 298 (451)
++..+.|..+--.-+.+.......|+- + ..+-+.-+..|-.-.++..+ +|+-. .=||-.-.++|||+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 455677888877777777666655431 0 12222222222233333333 34444 445678899999998
Q ss_pred Ccc--EEEEeCCCCCH------------------------------HHHHHHhcccCCCCCCcEEEEEeecc
Q psy10478 299 DVR--CVIHYGAPKDL------------------------------SAYYQEIGRAGRDGLSSVCYTFYKTA 338 (451)
Q Consensus 299 ~v~--~VI~~~~p~s~------------------------------~~y~Qr~GRagR~g~~g~~i~l~~~~ 338 (451)
+-. .||.++.|.-. ..-.|-.||+-|.- .-.+++++..+
T Consensus 610 hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~K-~dYg~mI~aDk 680 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRGK-TDYGLMIFADK 680 (755)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhcc-ccceeeEeeeh
Confidence 776 89999999721 12247889998864 44555555443
No 353
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=37.47 E-value=2.3e+02 Score=30.86 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=62.8
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-CCC-eeee-------------------------cCCCCHHHHHHHHHHhhcCCc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-GIQ-NRPY-------------------------HAHISLKQRKEIHGLFVKDLI 282 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-~~~-v~~~-------------------------h~~l~~~~R~~~~~~f~~g~~ 282 (451)
.+.++||.++++..|.+++..|+.. +-. |..| ...--...|..++..+.+++-
T Consensus 53 ~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~~R~~al~~L~~~~~ 132 (655)
T TIGR00631 53 VNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRHSATRSLLERRD 132 (655)
T ss_pred hCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999998765 223 4433 011112567888888888777
Q ss_pred eEEEEccccccccccC----CccEEEEeCCCCCHHHHHHHhccc
Q psy10478 283 KVVVATCAFGMGIDKP----DVRCVIHYGAPKDLSAYYQEIGRA 322 (451)
Q Consensus 283 ~iLVaT~~~~~GiD~p----~v~~VI~~~~p~s~~~y~Qr~GRa 322 (451)
.|+|||-..-.|+=-| .....+..|-.-+...+..+.-..
T Consensus 133 ~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv~~ 176 (655)
T TIGR00631 133 VIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVEL 176 (655)
T ss_pred eEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHHHc
Confidence 7888886556776444 345666777777777776655433
No 354
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.37 E-value=70 Score=32.28 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=25.3
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
++.+++||||+|.+.. .....+....+.++...++.+.++-..
T Consensus 126 ~~~kvvIIdea~~l~~------~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 126 GRYRVYIIDEVHMLSI------AAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred CCeEEEEEeChhhCCH------HHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 4678999999998864 223344444444444445555555333
No 355
>KOG0343|consensus
Probab=37.22 E-value=70 Score=33.54 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=41.8
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
..|-.+||..+|++-|-++.+.|.+. ++.+..+-||..-+ .+.-+=..++|||||+
T Consensus 139 ~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 139 TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 36678999999999999999999875 46677777876533 2222335678999995
No 356
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=37.20 E-value=24 Score=31.93 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=10.1
Q ss_pred cccEEEEccccccc
Q psy10478 131 RIVLIAIDEAHCVS 144 (451)
Q Consensus 131 ~l~~vViDEah~~~ 144 (451)
.+++||||||=.+.
T Consensus 192 ~~d~vIvDEAsq~~ 205 (236)
T PF13086_consen 192 KFDVVIVDEASQIT 205 (236)
T ss_dssp --SEEEETTGGGS-
T ss_pred cCCEEEEeCCCCcc
Confidence 58999999998764
No 357
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=36.92 E-value=47 Score=29.83 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=29.1
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPV 179 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~ 179 (451)
+.+++||+||.=....+|. -+.-. +..+....|...-|.+|+.-.|.
T Consensus 114 ~~ydlvVLDEi~~Al~~gl--i~~ee-vi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGY--LDVEE-VLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred CCCCEEEEehhhHHHHCCC--ccHHH-HHHHHHcCCCCCEEEEECCCCCH
Confidence 5799999999998888883 33322 22233334544556667654444
No 358
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=36.85 E-value=60 Score=35.31 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=24.5
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPV 179 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~ 179 (451)
++.+++||||+|.+.. ..+..|.+.....++.-.+++++|-+..
T Consensus 118 gk~KVIIIDEad~Ls~------~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK------SAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred CCcEEEEEECccccCH------HHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 4678999999998753 2233343334444433344444454433
No 359
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.82 E-value=67 Score=32.01 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.2
Q ss_pred CcccEEEEcccccccc
Q psy10478 130 PRIVLIAIDEAHCVSQ 145 (451)
Q Consensus 130 ~~l~~vViDEah~~~~ 145 (451)
++..++||||+|.+..
T Consensus 118 ~~~kviIIDEa~~l~~ 133 (363)
T PRK14961 118 SRFKVYLIDEVHMLSR 133 (363)
T ss_pred CCceEEEEEChhhcCH
Confidence 3578999999998864
No 360
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=36.82 E-value=18 Score=41.97 Aligned_cols=37 Identities=24% Similarity=0.143 Sum_probs=29.0
Q ss_pred CCCeeEEEeCccccccchhhHhhhhhhhhhhccccee
Q psy10478 60 DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHC 96 (451)
Q Consensus 60 ~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~ 96 (451)
+.+++|+|+||++|+........+..+..+++||+|-
T Consensus 161 s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHE 197 (1294)
T PRK11131 161 SDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHE 197 (1294)
T ss_pred CCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccc
Confidence 3468999999999987542334578888999999993
No 361
>PRK13767 ATP-dependent helicase; Provisional
Probab=36.79 E-value=72 Score=35.98 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=49.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH---------------C-CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR---------------N-GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-FG 292 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~---------------~-~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~ 292 (451)
.+.++|+.+++++-+.++.+.|.+ . ++.+...||+.+..++.+.+. ....|+|+|+- +.
T Consensus 83 ~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L~ 158 (876)
T PRK13767 83 DKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESLA 158 (876)
T ss_pred CCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHHH
Confidence 345699999999998877664431 1 557889999999888876553 45689999962 11
Q ss_pred ----c-cc--ccCCccEEEE
Q psy10478 293 ----M-GI--DKPDVRCVIH 305 (451)
Q Consensus 293 ----~-Gi--D~p~v~~VI~ 305 (451)
. .. .+.++++||.
T Consensus 159 ~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 159 ILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHhcChhHHHHHhcCCEEEE
Confidence 1 11 3567888874
No 362
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=36.73 E-value=63 Score=33.86 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.4
Q ss_pred CcccEEEEcccccccc
Q psy10478 130 PRIVLIAIDEAHCVSQ 145 (451)
Q Consensus 130 ~~l~~vViDEah~~~~ 145 (451)
++..++||||+|.+..
T Consensus 127 ~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 127 GKHKIFIIDEVHMLSK 142 (507)
T ss_pred CCcEEEEEEChhhcCH
Confidence 4678999999998864
No 363
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=36.62 E-value=2.1e+02 Score=26.81 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=41.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-CCCee-eecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-GIQNR-PYHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-~~~v~-~~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
.+.++-++=.+...++.+++.|++. ++.+. .+||-.++++...+.+.......++|+
T Consensus 104 ~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~ 162 (243)
T PRK03692 104 EGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVT 162 (243)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 4567777777778889999988764 66654 567778777778888888877766553
No 364
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=36.18 E-value=49 Score=27.06 Aligned_cols=37 Identities=8% Similarity=-0.043 Sum_probs=28.6
Q ss_pred CCCcEEEEcC-ChhHHHHHHHHHHHC------------CC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCP-TKVICEKVCDVLSRN------------GI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~-t~~~~~~l~~~L~~~------------~~-~v~~~h~~l~ 266 (451)
...++++||. +-..+...+..|+.. |+ .+..+.||+.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 6778999997 777788888888864 54 5778888864
No 365
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=36.14 E-value=77 Score=30.97 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=36.6
Q ss_pred HHHHHHHhhc-cCCCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 218 ADLRKLTNFE-NQFEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 218 ~~L~~~l~~~-~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
++|..++... ...+.++|+||++-..+-.++-.|+..|+. +..|.|++.
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 4455555432 336779999999987787888888888975 889999874
No 366
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=35.33 E-value=1.1e+02 Score=28.31 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=26.9
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
.+.+..++.. ...+..|||.+-..+..+.+.|++.|+.
T Consensus 165 ~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 202 (268)
T cd06270 165 YAAMQELLAR---GAPFTAVFCANDEMAAGAISALREHGIS 202 (268)
T ss_pred HHHHHHHHhC---CCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 4445555543 2346789999988888999999887653
No 367
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=35.32 E-value=55 Score=29.24 Aligned_cols=15 Identities=40% Similarity=0.368 Sum_probs=11.6
Q ss_pred cccEEEEcccccccc
Q psy10478 131 RIVLIAIDEAHCVSQ 145 (451)
Q Consensus 131 ~l~~vViDEah~~~~ 145 (451)
.=+++||||||.+..
T Consensus 79 ~~~liviDEa~~~~~ 93 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFP 93 (193)
T ss_dssp TT-EEEETTGGGTSB
T ss_pred CCcEEEEECChhhcC
Confidence 457999999998764
No 368
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=35.28 E-value=75 Score=29.83 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCC
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGI 256 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~ 256 (451)
.++.+.+.++ +++.+.+|+++.++++++.+.|++.|+
T Consensus 177 ~le~~~~~Lk----pgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 177 VLEHVSDALK----PGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred HHHHHHHHhC----CCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 3444444444 889999999999999999999998754
No 369
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=34.34 E-value=75 Score=34.08 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=24.5
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATA 176 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~ 176 (451)
++.+++||||+|.+.. .....|.+..+.+|..-++.|.+|-
T Consensus 131 a~~KVvIIDEad~Ls~------~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 131 ARYKVYIIDEVHMLST------AAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred CCcEEEEEEChHhCCH------HHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 4688999999999864 2344444444444444344444443
No 370
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=34.28 E-value=55 Score=29.05 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=28.8
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEee-CChHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTAT-ATPVV 180 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT-~~~~~ 180 (451)
+.+++||+||.=....+|. -+.-. +..+....|...-+.+|+- +|++.
T Consensus 114 ~~~dlvVLDEi~~Al~~gl--i~~ee-Vl~~L~~rp~~~evILTGR~~p~~L 162 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGL--IPETE-VLEFLEKRPSHVDVILTGPEMPESL 162 (178)
T ss_pred CCCCEEEEehhHHHHHCCC--ccHHH-HHHHHHhCCCCCEEEEECCCCCHHH
Confidence 5799999999998888773 33222 2233333454445666665 44444
No 371
>PHA02558 uvsW UvsW helicase; Provisional
Probab=34.23 E-value=21 Score=37.34 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=27.2
Q ss_pred CeeEEEeCccccccchhhHhhhhhhhhhhcccceecc
Q psy10478 62 CRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVS 98 (451)
Q Consensus 62 ~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~ 98 (451)
..+|+++||+++.... ...+.++.++++||+|...
T Consensus 201 ~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~~~ 235 (501)
T PHA02558 201 DAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHLFT 235 (501)
T ss_pred CCCEEEeeHHHHhhch--hhhccccCEEEEEchhccc
Confidence 3589999999987532 3356788899999999764
No 372
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.21 E-value=74 Score=34.24 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=29.9
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVI 181 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~ 181 (451)
++.+++||||+|.+.. .....+......+|...++.+++|-.....
T Consensus 120 ~~~KVvIIdea~~Ls~------~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQ------AAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred CCcEEEEEECcccCCH------HHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 5688999999999864 234445555666666666666666444333
No 373
>PRK04132 replication factor C small subunit; Provisional
Probab=34.11 E-value=70 Score=35.72 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=27.8
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHH
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVI 181 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~ 181 (451)
+..++||||||.+.. .....|......+++.-.+.+.++.+....
T Consensus 630 ~~KVvIIDEaD~Lt~------~AQnALLk~lEep~~~~~FILi~N~~~kIi 674 (846)
T PRK04132 630 SFKIIFLDEADALTQ------DAQQALRRTMEMFSSNVRFILSCNYSSKII 674 (846)
T ss_pred CCEEEEEECcccCCH------HHHHHHHHHhhCCCCCeEEEEEeCChhhCc
Confidence 468999999999863 233345555555554445566666554443
No 374
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=34.01 E-value=2.9e+02 Score=26.02 Aligned_cols=65 Identities=8% Similarity=0.044 Sum_probs=45.1
Q ss_pred HHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC--CCCeee-ecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 222 KLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN--GIQNRP-YHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 222 ~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~--~~~v~~-~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
.+++....++.++-++=.+...+++.+..|++. +..+.. +||-.++.+.+.++++....+.+||.
T Consensus 99 ~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~ 166 (253)
T COG1922 99 ALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILL 166 (253)
T ss_pred HHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEE
Confidence 333333334566666667778888888888876 345554 45888888888899998887777664
No 375
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=34.00 E-value=2e+02 Score=28.56 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=37.5
Q ss_pred CCCcEEEEcC-ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhh
Q psy10478 230 FEGSTIIYCP-TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFV 278 (451)
Q Consensus 230 ~~~~~iVF~~-t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~ 278 (451)
.+.+++|||. +-..+..++..|...|+.+..+.||+..- |...++.+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 5678999995 55678888999999999999999998654 455555554
No 376
>KOG0337|consensus
Probab=33.87 E-value=1.4e+02 Score=30.28 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=50.8
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHCC----CCeeeecCCCCHHHHHHHHHHhh--cCCceEEEEcc------ccccccc
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRNG----IQNRPYHAHISLKQRKEIHGLFV--KDLIKVVVATC------AFGMGID 296 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~~----~~v~~~h~~l~~~~R~~~~~~f~--~g~~~iLVaT~------~~~~GiD 296 (451)
+.+-+++|..+|++-+.+.-+.+++.| .....+.|+-+. .++|. ++.-+|++||. .+.|-++
T Consensus 88 ~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~------eeqf~~l~~npDii~ATpgr~~h~~vem~l~ 161 (529)
T KOG0337|consen 88 QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSI------EEQFILLNENPDIIIATPGRLLHLGVEMTLT 161 (529)
T ss_pred ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchH------HHHHHHhccCCCEEEecCceeeeeehheecc
Confidence 567899999999999999988888764 334434444333 33343 35668999995 3556677
Q ss_pred cCCccEEEEeC
Q psy10478 297 KPDVRCVIHYG 307 (451)
Q Consensus 297 ~p~v~~VI~~~ 307 (451)
+..|.+||.-.
T Consensus 162 l~sveyVVfdE 172 (529)
T KOG0337|consen 162 LSSVEYVVFDE 172 (529)
T ss_pred ccceeeeeehh
Confidence 78899998533
No 377
>PRK10329 glutaredoxin-like protein; Provisional
Probab=33.77 E-value=2e+02 Score=21.51 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=38.5
Q ss_pred cEEEEc-CChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 233 STIIYC-PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 233 ~~iVF~-~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
++.+|. ++.-.|..+.++|.+.|+....+.-+..++.+..... .....+++++--+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~ 58 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGD 58 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECC
Confidence 466777 5678899999999999998887777766655554433 2334566666543
No 378
>KOG4166|consensus
Probab=33.49 E-value=2.6e+02 Score=28.39 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=58.4
Q ss_pred HHHHHHHHHHCCCCeeee-cCCCCHHHHHHHHHHhhcCCceEEEEcccccccc-c---------------------cCCc
Q psy10478 244 CEKVCDVLSRNGIQNRPY-HAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI-D---------------------KPDV 300 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~-h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~Gi-D---------------------~p~v 300 (451)
.+++++.+.....++.+. ||-+...+--..+.+|. ...+|=|+|...+.|- | +.+.
T Consensus 288 i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fs-er~qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~a 366 (675)
T KOG4166|consen 288 IEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFS-ERTQIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHA 366 (675)
T ss_pred HHHHHHHHHhccCceEEeCcccccCCcchHHHHHHH-HhhcCcceehhhcccCcCCCCchhhhhhcccccceehhhhhcc
Confidence 455666666655555544 33344444444555553 3457888888877762 1 1233
Q ss_pred cEEEEeC------CCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHH
Q psy10478 301 RCVIHYG------APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKN 343 (451)
Q Consensus 301 ~~VI~~~------~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~ 343 (451)
++++-++ ...+++.|.-++-||+-.|+.|....=+++.+..+.
T Consensus 367 DLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~rggIiHfdispknIgKv 415 (675)
T KOG4166|consen 367 DLILAFGVRFDDRVTGNLSAFAPRARRAAAEGRGGIIHFDISPKNIGKV 415 (675)
T ss_pred ceeEEecceeccccccchhhhChhhhhhhhcccCceEEEecCHHHhCcc
Confidence 3444333 334788888888888777777766666666655443
No 379
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=33.32 E-value=1.1e+02 Score=25.80 Aligned_cols=48 Identities=4% Similarity=-0.080 Sum_probs=31.7
Q ss_pred HHHHHHhhc-cCCCCcEEEEcCC---hhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 219 DLRKLTNFE-NQFEGSTIIYCPT---KVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 219 ~L~~~l~~~-~~~~~~~iVF~~t---~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.+++... .....++||||.+ -..+-.+.-.|+..|.. +..|.|++.
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 344444332 2367899999986 34455666677777854 778999865
No 380
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.31 E-value=75 Score=33.48 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.5
Q ss_pred CcccEEEEcccccccc
Q psy10478 130 PRIVLIAIDEAHCVSQ 145 (451)
Q Consensus 130 ~~l~~vViDEah~~~~ 145 (451)
++.+++||||+|.+..
T Consensus 118 ~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 118 GRFKVYIIDEVHMLSK 133 (527)
T ss_pred CCceEEEEcCcccCCH
Confidence 4678999999998864
No 381
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=33.25 E-value=53 Score=25.53 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCCe----eeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 245 EKVCDVLSRNGIQN----RPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 245 ~~l~~~L~~~~~~v----~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
+..+++|++.|+.+ ...+.+-...-+..+.+.+++|+++.+|.|..
T Consensus 20 ~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 20 EGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred hHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 44567788889883 33333323334457999999999988887753
No 382
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=33.23 E-value=9 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.002 Sum_probs=32.0
Q ss_pred cchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCc
Q psy10478 35 KYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTP 70 (451)
Q Consensus 35 ~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tP 70 (451)
.++.+..++|+++..++..+++...++..+||++|-
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~ 41 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATD 41 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESC
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeec
Confidence 456688899999999999999999999999999993
No 383
>PRK08084 DNA replication initiation factor; Provisional
Probab=33.21 E-value=44 Score=30.98 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=28.7
Q ss_pred CcccEEEEccccccccCCCCcHHHH-HHHHHhhccCCCCCEEEEEeeCChHH----HHHHHHhc
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVV----IDDICTSL 188 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~-~~l~~l~~~~~~~~~v~lSAT~~~~~----~~~i~~~l 188 (451)
.+.++++|||+|.+.... .+...+ ..+..... .+...+++|++.++.. ..++...+
T Consensus 96 ~~~dlliiDdi~~~~~~~-~~~~~lf~l~n~~~e--~g~~~li~ts~~~p~~l~~~~~~L~SRl 156 (235)
T PRK08084 96 EQLSLVCIDNIECIAGDE-LWEMAIFDLYNRILE--SGRTRLLITGDRPPRQLNLGLPDLASRL 156 (235)
T ss_pred hhCCEEEEeChhhhcCCH-HHHHHHHHHHHHHHH--cCCCeEEEeCCCChHHcCcccHHHHHHH
Confidence 357899999999875311 122222 22222221 2333466677766554 34555544
No 384
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=33.00 E-value=81 Score=30.92 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=30.5
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
+..+++||||||.+.. .....+.+..+.+|+.-++.++++-+......+
T Consensus 109 ~~~kvviI~~a~~~~~------~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 109 SNKKVYIIEHADKMTA------SAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred cCceEEEeehHhhhCH------HHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 4678999999998853 233455555666666556666665444443333
No 385
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=32.72 E-value=2.4e+02 Score=21.97 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=32.6
Q ss_pred CCCcEEEEcC------ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHH
Q psy10478 230 FEGSTIIYCP------TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275 (451)
Q Consensus 230 ~~~~~iVF~~------t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~ 275 (451)
...+++||.. +...|..+.+.|.+.|+....+.=.-.++.+....+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~ 61 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKE 61 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 4579999964 578889999999999987766554444555554443
No 386
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=31.90 E-value=78 Score=31.64 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=26.2
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~ 177 (451)
+...++||||+|.+.. .....|.+..+..|...++++++.-+
T Consensus 140 ~~~kVviIDead~m~~------~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTADEMNA------NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechHhcCH------HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 4678999999998743 33344555555556555555554443
No 387
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.71 E-value=27 Score=38.23 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.4
Q ss_pred cEEEEcccccccc
Q psy10478 133 VLIAIDEAHCVSQ 145 (451)
Q Consensus 133 ~~vViDEah~~~~ 145 (451)
.+|||||||.+.+
T Consensus 222 ~ivI~DEAHNL~d 234 (705)
T TIGR00604 222 SIVIFDEAHNLDN 234 (705)
T ss_pred CEEEEECccchHH
Confidence 6899999999864
No 388
>KOG1133|consensus
Probab=31.56 E-value=38 Score=36.36 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=11.5
Q ss_pred ccEEEEcccccccc
Q psy10478 132 IVLIAIDEAHCVSQ 145 (451)
Q Consensus 132 l~~vViDEah~~~~ 145 (451)
=++|||||||.+.+
T Consensus 349 dsIvIiDEAHNlid 362 (821)
T KOG1133|consen 349 DSIVIIDEAHNLID 362 (821)
T ss_pred ccEEEEechhHHHH
Confidence 45899999998764
No 389
>PRK05642 DNA replication initiation factor; Validated
Probab=31.39 E-value=57 Score=30.22 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=24.9
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPV 179 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~ 179 (451)
.+.+++|||++|.+.... .+...+-.+-..+ ..+...+++|+|.++.
T Consensus 96 ~~~d~LiiDDi~~~~~~~-~~~~~Lf~l~n~~--~~~g~~ilits~~~p~ 142 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKA-DWEEALFHLFNRL--RDSGRRLLLAASKSPR 142 (234)
T ss_pred hhCCEEEEechhhhcCCh-HHHHHHHHHHHHH--HhcCCEEEEeCCCCHH
Confidence 467899999999775221 1222222221111 1223457777776654
No 390
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=31.25 E-value=60 Score=31.69 Aligned_cols=38 Identities=18% Similarity=0.415 Sum_probs=33.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~~ 267 (451)
+++++++||.+-..++..+.+|.+.|+. +..+.||+..
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 6789999999999999999999999985 8889999754
No 391
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=31.11 E-value=26 Score=37.99 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.2
Q ss_pred cccEEEEccccccccCC
Q psy10478 131 RIVLIAIDEAHCVSQWG 147 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g 147 (451)
.-.++|+||||++.++.
T Consensus 220 ~~~v~v~DEAH~l~d~a 236 (654)
T COG1199 220 ENDVVVFDEAHNLPDIA 236 (654)
T ss_pred cccEEEEeccccchHHH
Confidence 47799999999998754
No 392
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.95 E-value=95 Score=33.46 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=24.6
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~ 177 (451)
++.+++||||||.+.. .....|....+..+..-++++.++-+
T Consensus 120 ~~~KViIIDEad~Lt~------~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 120 ARWKVYVIDECHMLST------AAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred CCceEEEEECccccCH------HHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 4678999999998854 22334444444444444444554543
No 393
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=30.93 E-value=97 Score=32.98 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=25.2
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~ 177 (451)
++.+++||||+|.+.. .....+......+|..-++.+.+|-.
T Consensus 118 ~~~KVvIIDEa~~Ls~------~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 118 SRYRVYIIDEVHMLSN------SAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred CCCEEEEEEChhhcCH------HHHHHHHHhhccCCCCEEEEEecCCh
Confidence 5788999999998864 23334444444444444444544543
No 394
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.87 E-value=99 Score=32.73 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=24.0
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATA 176 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~ 176 (451)
++.+++||||+|.+... ....+....+.+|+.-++.+..|-
T Consensus 118 g~~kViIIDEa~~ls~~------a~naLLK~LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQ------SFNALLKTLEEPPEYVKFILATTD 158 (546)
T ss_pred CCcEEEEEechhhccHH------HHHHHHHHHhcCCCCceEEEEECC
Confidence 46789999999998642 233444444555544334443343
No 395
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=30.44 E-value=1.3e+02 Score=29.15 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCe
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQN 258 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v 258 (451)
.+.+..++.. ......|||.+-..+..+...|.+.|+.+
T Consensus 231 ~~~~~~~l~~---~~~~~ai~~~nd~~A~g~~~~l~~~g~~v 269 (342)
T PRK10014 231 AEAITALLRH---NPTISAVVCYNETIAMGAWFGLLRAGRQS 269 (342)
T ss_pred HHHHHHHHcC---CCCCCEEEECCcHHHHHHHHHHHHcCCCC
Confidence 3445555543 33567899999999888888888876544
No 396
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=30.40 E-value=97 Score=30.42 Aligned_cols=50 Identities=10% Similarity=0.079 Sum_probs=30.0
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
+..+++||||||.|.. .....+.+..+.+|..-+++++++-+......|.
T Consensus 105 ~~~kv~iI~~a~~m~~------~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~ 154 (328)
T PRK05707 105 GGRKVVLIEPAEAMNR------NAANALLKSLEEPSGDTVLLLISHQPSRLLPTIK 154 (328)
T ss_pred CCCeEEEECChhhCCH------HHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHH
Confidence 4688999999999854 3334454455555554455556555444444433
No 397
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=30.16 E-value=4.3e+02 Score=25.55 Aligned_cols=136 Identities=8% Similarity=0.075 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHhhc-----cCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHH------------H
Q psy10478 214 DDIMADLRKLTNFE-----NQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG------------L 276 (451)
Q Consensus 214 ~~~~~~L~~~l~~~-----~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~------------~ 276 (451)
..|+..|..++... ...+-+++|.+++.+..+-+...|...++....+.|....++....-. .
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSK 174 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccc
Confidence 45666666666554 446778999999999999999999988888888888766554443330 0
Q ss_pred h-hc--CCceEEEEccc-cccc----cccCCccEEEEeCCCCCH-HHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhh
Q psy10478 277 F-VK--DLIKVVVATCA-FGMG----IDKPDVRCVIHYGAPKDL-SAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIF 347 (451)
Q Consensus 277 f-~~--g~~~iLVaT~~-~~~G----iD~p~v~~VI~~~~p~s~-~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~ 347 (451)
. .. ....|-.+|+. +... .+-.+++.||-+|.--+. ...+|.+=..+|.+...-.+.++...-.+.+....
T Consensus 175 ~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~nSiEHi~L~~ 254 (297)
T PF11496_consen 175 KKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSNSIEHIELCF 254 (297)
T ss_dssp -------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETTSHHHHHHHH
T ss_pred cccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCCCHHHHHHHc
Confidence 0 11 23344444443 3332 233478899999976432 34555553334433445556666555555554444
Q ss_pred cC
Q psy10478 348 QP 349 (451)
Q Consensus 348 ~~ 349 (451)
..
T Consensus 255 ~~ 256 (297)
T PF11496_consen 255 PK 256 (297)
T ss_dssp TT
T ss_pred cC
Confidence 33
No 398
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=30.03 E-value=85 Score=32.29 Aligned_cols=51 Identities=12% Similarity=0.239 Sum_probs=26.9
Q ss_pred cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHH
Q psy10478 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVID 182 (451)
Q Consensus 129 l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~ 182 (451)
+.+.++++|||+|.+..+...-...+..+..+.. .+. .+++|++.++....
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k-~IIlts~~~p~~l~ 250 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGK-LIVISSTCAPQDLK 250 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCC-cEEEecCCCHHHHh
Confidence 4578999999999886432211222222222221 233 45556665554433
No 399
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=29.88 E-value=97 Score=30.40 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=32.1
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
++.+++|||+||.|.. ..-..+.+..+-+|..-+++++++-+......|.
T Consensus 106 g~~KV~iI~~a~~m~~------~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 106 GGNKVVYIQGAERLTE------AAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred CCceEEEEechhhhCH------HHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 4688999999999854 2334455555666655566666665555544443
No 400
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=29.58 E-value=95 Score=34.01 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=25.7
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
++.+++||||||.+.. .....|......+|..-++.+.+|-+.
T Consensus 117 g~~KV~IIDEa~~LT~------~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 117 SKYKIYIIDEVHMLSK------SAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred CCCEEEEEEChhhCCH------HHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 4688999999998853 234444444455554444455545433
No 401
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=29.30 E-value=95 Score=33.21 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=27.3
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
++.+++||||||.+.. .....|......+|...++.+.+|-+...
T Consensus 118 ~~~KVIIIDEad~Lt~------~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 118 FKYKVYIIDEAHMLST------SAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred CCcEEEEEechHhCCH------HHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 3567899999998853 23344545555555555555555544433
No 402
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=29.25 E-value=92 Score=31.17 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=20.8
Q ss_pred ccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEE
Q psy10478 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVT 173 (451)
Q Consensus 132 l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lS 173 (451)
-+.+.|||+|++. -..|..|.+..+. +-.|++.|.
T Consensus 279 pGVLFIDEvHmLD------iEcFsfLnralEs-~~sPiiIlA 313 (398)
T PF06068_consen 279 PGVLFIDEVHMLD------IECFSFLNRALES-ELSPIIILA 313 (398)
T ss_dssp E-EEEEESGGGSB------HHHHHHHHHHHTS-TT--EEEEE
T ss_pred cceEEecchhhcc------HHHHHHHHHHhcC-CCCcEEEEe
Confidence 3689999999873 3455566555443 456776654
No 403
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=29.15 E-value=64 Score=36.46 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=28.4
Q ss_pred chhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 121 VPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 121 ~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
.|+..+.. .=-+||+||.|.+...+ ..+..|..+ .| .-++.+|||.+.
T Consensus 193 ~p~~~i~~--~~PivIiDEPh~~~~~~----k~~~~i~~l---np-l~~lrysAT~~~ 240 (986)
T PRK15483 193 SPVDALAA--TRPVVIIDEPHRFPRDN----KFYQAIEAL---KP-QMIIRFGATFPD 240 (986)
T ss_pred ChHHHHHh--CCCEEEEECCCCCCcch----HHHHHHHhc---Cc-ccEEEEeeecCC
Confidence 34444444 23479999999986432 234444332 22 336779999976
No 404
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=29.03 E-value=75 Score=24.31 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=28.0
Q ss_pred HHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 248 ~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
+++|++.|+.+...|..... .+..+.+.+++|+++.+|.|..
T Consensus 23 a~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 56677888876433333321 1245888999999998888753
No 405
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=28.95 E-value=3.9e+02 Score=29.01 Aligned_cols=94 Identities=12% Similarity=0.174 Sum_probs=61.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-CCC-eeee--------------------cCC--CC---HHHHHHHHHHhhcCCc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-GIQ-NRPY--------------------HAH--IS---LKQRKEIHGLFVKDLI 282 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-~~~-v~~~--------------------h~~--l~---~~~R~~~~~~f~~g~~ 282 (451)
.+.++||.+++...++.++..|... +-. |..| +.. -+ ...|..++..+.+++.
T Consensus 56 ~~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~~R~~~l~~L~~~~~ 135 (652)
T PRK05298 56 LQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRHSATKSLLERRD 135 (652)
T ss_pred hCCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHHHHHHHHHHHHhCCC
Confidence 3568999999999999999888765 222 4333 000 11 3568888998888776
Q ss_pred eEEEEccccccccccC----CccEEEEeCCCCCHHHHHHHhcccC
Q psy10478 283 KVVVATCAFGMGIDKP----DVRCVIHYGAPKDLSAYYQEIGRAG 323 (451)
Q Consensus 283 ~iLVaT~~~~~GiD~p----~v~~VI~~~~p~s~~~y~Qr~GRag 323 (451)
.|+|+|..+-.++=-| +-...+..|-.-+...+..+.-..|
T Consensus 136 ~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~~G 180 (652)
T PRK05298 136 VIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVDLQ 180 (652)
T ss_pred EEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHHcC
Confidence 7888775444665444 3445667777777777766654443
No 406
>PF13245 AAA_19: Part of AAA domain
Probab=28.83 E-value=1.2e+02 Score=22.44 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=29.7
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecC
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHA 263 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~ 263 (451)
...+..++......+++++|.+.|+..++.+.+.| ..+.. +..+|+
T Consensus 28 ~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl-~~~~~~~~T~h~ 74 (76)
T PF13245_consen 28 AARIAELLAARADPGKRVLVLAPTRAAADELRERL-GLGVPFAMTIHS 74 (76)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH-cCCCcchhhHHH
Confidence 33444444322123788999999999999999988 33333 555554
No 407
>PRK06921 hypothetical protein; Provisional
Probab=28.71 E-value=1.5e+02 Score=28.17 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=11.7
Q ss_pred cCcccEEEEccccc
Q psy10478 129 IPRIVLIAIDEAHC 142 (451)
Q Consensus 129 l~~l~~vViDEah~ 142 (451)
+.+.++|||||.|.
T Consensus 175 ~~~~dlLiIDDl~~ 188 (266)
T PRK06921 175 MKKVEVLFIDDLFK 188 (266)
T ss_pred hcCCCEEEEecccc
Confidence 35799999999965
No 408
>PRK11054 helD DNA helicase IV; Provisional
Probab=28.58 E-value=8.1e+02 Score=26.83 Aligned_cols=72 Identities=15% Similarity=0.038 Sum_probs=37.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHHC---CCCeeeecCCCCHHHHHHHHHHhh--cCCceEEEEccccccccccCCccEEEEe
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSRN---GIQNRPYHAHISLKQRKEIHGLFV--KDLIKVVVATCAFGMGIDKPDVRCVIHY 306 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~~---~~~v~~~h~~l~~~~R~~~~~~f~--~g~~~iLVaT~~~~~GiD~p~v~~VI~~ 306 (451)
.+.+..+.+ ...+.+.+.+.+. +..+..+.-. ...+...++.+. -....|-+.|--.+.|+.+ ++||.+
T Consensus 535 ~p~v~~~~~-~~~~~il~~l~~~~~~~~~I~IL~R~--~~~~~~~l~~~~~~~~~~~i~~~T~h~sKGLEf---D~ViI~ 608 (684)
T PRK11054 535 KKAVTLLPE-DQLEALLDKLSGYAKPDERILLLARY--HHLRPALLDKAATRWPKLQIDFMTIHASKGQQA---DYVIIL 608 (684)
T ss_pred CceEEEeCC-HHHHHHHHHHHHhhcCCCcEEEEEec--hhhHHHHHHHHHhhcccCCeEEEehhhhcCCcC---CEEEEe
Confidence 344444444 3555666666542 3344443321 112222333322 1234688999999999874 677776
Q ss_pred CCC
Q psy10478 307 GAP 309 (451)
Q Consensus 307 ~~p 309 (451)
|+.
T Consensus 609 g~~ 611 (684)
T PRK11054 609 GLQ 611 (684)
T ss_pred cCC
Confidence 653
No 409
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=28.55 E-value=46 Score=28.46 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=27.5
Q ss_pred HHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCC
Q psy10478 219 DLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNG 255 (451)
Q Consensus 219 ~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~ 255 (451)
.|.+++++....+.++||..+|+-.+++++++|+..+
T Consensus 21 vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 21 VLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp HHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred ccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCC
Confidence 3555555555588999999999999999999998553
No 410
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=28.40 E-value=1.1e+02 Score=29.97 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=30.7
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
++.+++|||+||.|.. ..-..+.+..+.+|..-++++.+.-+......|.
T Consensus 112 g~~kV~iI~~ae~m~~------~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 112 GIAQVVIVDPADAINR------AACNALLKTLEEPSPGRYLWLISAQPARLPATIR 161 (319)
T ss_pred CCcEEEEeccHhhhCH------HHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH
Confidence 4688999999999853 3334455555666655555555554444444443
No 411
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=28.37 E-value=26 Score=38.37 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=33.2
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccch
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNT 77 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~ 77 (451)
...++=|-+|.|+|.++.....-.+...+-+|||.|....+..+
T Consensus 50 ~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQ 93 (697)
T PRK11747 50 RILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQ 93 (697)
T ss_pred ceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence 45666778899999998877765544455689999999888655
No 412
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=28.30 E-value=68 Score=28.27 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=24.8
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
+.+++||+||+=....+|. -+.- .+..+....|...-+.+|+--.+..
T Consensus 95 ~~~dlvILDEi~~a~~~gl--l~~~-~v~~~l~~rp~~~evVlTGR~~~~~ 142 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGL--LSEE-EVLDLLENRPESLEVVLTGRNAPEE 142 (172)
T ss_dssp TT-SEEEEETHHHHHHTTS--S-HH-HHHHHHHTS-TT-EEEEE-SS--HH
T ss_pred CCCCEEEEcchHHHhHCCC--ccHH-HHHHHHHcCCCCeEEEEECCCCCHH
Confidence 4799999999998888773 2222 2333333334445566666544433
No 413
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=28.30 E-value=92 Score=34.75 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=35.0
Q ss_pred CCcEEEEc-CChhHHHHHHHHHHHC---------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCc
Q psy10478 231 EGSTIIYC-PTKVICEKVCDVLSRN---------------------------GIQNRPYHAHISLKQRKEIHGLFVKDLI 282 (451)
Q Consensus 231 ~~~~iVF~-~t~~~~~~l~~~L~~~---------------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~ 282 (451)
..+.|||+ +++.-+.++++.+.+. ++.+..++||.+.+.... .. ....
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~---~l-~~~p 136 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWM---LD-PHRP 136 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHH---hc-CCCC
Confidence 34567766 8887777766655432 256788899987553322 22 2456
Q ss_pred eEEEEc
Q psy10478 283 KVVVAT 288 (451)
Q Consensus 283 ~iLVaT 288 (451)
.|||+|
T Consensus 137 ~IIVgT 142 (844)
T TIGR02621 137 AVIVGT 142 (844)
T ss_pred cEEEEC
Confidence 899999
No 414
>PRK08116 hypothetical protein; Validated
Probab=27.94 E-value=96 Score=29.42 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.4
Q ss_pred cCcccEEEEccccc
Q psy10478 129 IPRIVLIAIDEAHC 142 (451)
Q Consensus 129 l~~l~~vViDEah~ 142 (451)
+.+.+++||||.+.
T Consensus 176 l~~~dlLviDDlg~ 189 (268)
T PRK08116 176 LVNADLLILDDLGA 189 (268)
T ss_pred hcCCCEEEEecccC
Confidence 45789999999964
No 415
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=27.88 E-value=1.7e+02 Score=27.49 Aligned_cols=88 Identities=9% Similarity=0.195 Sum_probs=55.6
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCC---CCeeeecCC-CCHHHHHHHHHHhhcCCceEEEEcc-----cccc-ccccCCc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNG---IQNRPYHAH-ISLKQRKEIHGLFVKDLIKVVVATC-----AFGM-GIDKPDV 300 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~---~~v~~~h~~-l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p~v 300 (451)
...+||.|.+--.|-.+.+.|+... ..++-+.+. +.-++....+ ..+.+.|.|+|+ .+.. .+.+.++
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L---~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLL---KKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHH---HhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 3558899999999999999998762 344444443 3444444433 457899999995 2333 3455566
Q ss_pred cEEE------------EeCCCCCHHHHHHHhcc
Q psy10478 301 RCVI------------HYGAPKDLSAYYQEIGR 321 (451)
Q Consensus 301 ~~VI------------~~~~p~s~~~y~Qr~GR 321 (451)
.+|| .+|.|.+...+++..++
T Consensus 203 ~~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL~~ 235 (252)
T PF14617_consen 203 KRIVLDWSYLDQKKRSIFDIPETREDLWKLLYK 235 (252)
T ss_pred eEEEEcCCccccccccccccHHHHHHHHHHHhh
Confidence 6665 25566666666665554
No 416
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=27.82 E-value=99 Score=26.21 Aligned_cols=82 Identities=11% Similarity=-0.002 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEE-ccccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVA-TCAFG 292 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVa-T~~~~ 292 (451)
..+...+..++.+....+.+++|+|.+...++.+-+.|=...-....=|+-.... ......|+++ ++.
T Consensus 12 ~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~~-- 80 (142)
T PRK05728 12 SALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPGK-- 80 (142)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCCC--
Confidence 3456667777777777899999999999999999888865433333345432211 0234578887 221
Q ss_pred cccccCCccEEEEeCC
Q psy10478 293 MGIDKPDVRCVIHYGA 308 (451)
Q Consensus 293 ~GiD~p~v~~VI~~~~ 308 (451)
-+.+.-+++||.+.
T Consensus 81 --~~~~~~~~LinL~~ 94 (142)
T PRK05728 81 --RNANHRDLLINLDG 94 (142)
T ss_pred --CCCCCCcEEEECCC
Confidence 23344567887764
No 417
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=27.70 E-value=1.1e+02 Score=30.22 Aligned_cols=50 Identities=8% Similarity=0.077 Sum_probs=31.6
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
++.+++|||+||.|.. ..-..+.+..+-+|..-++++.++-+......|.
T Consensus 131 ~~~kV~iI~~ae~m~~------~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~ 180 (342)
T PRK06964 131 GGARVVVLYPAEALNV------AAANALLKTLEEPPPGTVFLLVSARIDRLLPTIL 180 (342)
T ss_pred CCceEEEEechhhcCH------HHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHH
Confidence 5688999999999853 3334454555566655566666665555544443
No 418
>PRK01172 ski2-like helicase; Provisional
Probab=27.60 E-value=2e+02 Score=31.38 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=46.8
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH---CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-cccCCc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR---NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGMG-IDKPDV 300 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~---~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v 300 (451)
.++++|+.+|++.-+.+.++.+.+ .|..+...+|+.+...+ +. +..+|+|+|. .+.++ ..+.++
T Consensus 64 ~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~------~~-~~~dIiv~Tpek~~~l~~~~~~~l~~v 136 (674)
T PRK01172 64 AGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD------FI-KRYDVVILTSEKADSLIHHDPYIINDV 136 (674)
T ss_pred hCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh------hh-ccCCEEEECHHHHHHHHhCChhHHhhc
Confidence 457899999999999998887764 47788888888764321 11 3458999996 12222 235567
Q ss_pred cEEEE
Q psy10478 301 RCVIH 305 (451)
Q Consensus 301 ~~VI~ 305 (451)
++||.
T Consensus 137 ~lvVi 141 (674)
T PRK01172 137 GLIVA 141 (674)
T ss_pred CEEEE
Confidence 77763
No 419
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=27.59 E-value=83 Score=28.22 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEee-CChHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTAT-ATPVVI 181 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT-~~~~~~ 181 (451)
.++++||+||.--.+.+|. -+. ..+..+....|.-.-|.+|+. ++++..
T Consensus 121 ~~ydlviLDEl~~al~~g~--l~~-eeV~~~l~~kP~~~~vIiTGr~ap~~li 170 (198)
T COG2109 121 GKYDLVILDELNYALRYGL--LPL-EEVVALLKARPEHTHVIITGRGAPPELI 170 (198)
T ss_pred CCCCEEEEehhhHHHHcCC--CCH-HHHHHHHhcCCCCcEEEEECCCCCHHHH
Confidence 4699999999998887773 332 223333344455556666665 444443
No 420
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=27.19 E-value=1.4e+02 Score=20.85 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=36.7
Q ss_pred EEEc-CChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy10478 235 IIYC-PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVA 287 (451)
Q Consensus 235 iVF~-~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVa 287 (451)
.+|. +....|..+...|.+.++....+.-.-.+..+....+.+..+.+++++-
T Consensus 3 ~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred EEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 3444 5577888888889988887777765555555666666676667777764
No 421
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=26.82 E-value=3.4e+02 Score=21.86 Aligned_cols=33 Identities=3% Similarity=0.098 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHH
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDV 250 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~ 250 (451)
..+..+.+.+.. ..+|+++||.|-..+-.+...
T Consensus 73 ~~v~~f~~~l~~---~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 73 EDVEAFADALES---LPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HHHHHHHHHHHT---TTTSEEEE-SCSHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCEEEECCCChhHHHHHHH
Confidence 344555555554 457999999998877666543
No 422
>KOG0348|consensus
Probab=26.76 E-value=3.7e+02 Score=28.41 Aligned_cols=90 Identities=11% Similarity=0.131 Sum_probs=54.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeee-ecCCCCHHHHHHHHHHhhcCCceEEEEccc-------cccccccCCcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRP-YHAHISLKQRKEIHGLFVKDLIKVVVATCA-------FGMGIDKPDVR 301 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~-~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-------~~~GiD~p~v~ 301 (451)
.|.=++|.++|++-|.++++.+.+.--.... +-|.+--.|+.+-+++-....++|||+|+- -...|++..++
T Consensus 210 ~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LR 289 (708)
T KOG0348|consen 210 DGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLR 289 (708)
T ss_pred CCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeee
Confidence 4556899999999999999988876322211 122222223344444333445799999962 23456777888
Q ss_pred EEEE--------eCCCCCHHHHHHHh
Q psy10478 302 CVIH--------YGAPKDLSAYYQEI 319 (451)
Q Consensus 302 ~VI~--------~~~p~s~~~y~Qr~ 319 (451)
+||. +|+-+++...+-.+
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v 315 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAV 315 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHH
Confidence 8874 44445555544444
No 423
>KOG1180|consensus
Probab=26.69 E-value=2.3e+02 Score=29.99 Aligned_cols=76 Identities=9% Similarity=0.001 Sum_probs=56.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc-----ccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM-----GIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~-----GiD~p~v~~VI 304 (451)
.+.++.||+.|+..--..+...-..++.+...++.+..+ .++..+.+-+...|++.+-+-. --..++|.++|
T Consensus 114 ~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGee---al~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II 190 (678)
T KOG1180|consen 114 KETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEE---ALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHII 190 (678)
T ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChh---hhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEE
Confidence 455699999999987777777778899999999888743 4555666677777777653322 13557899999
Q ss_pred EeCC
Q psy10478 305 HYGA 308 (451)
Q Consensus 305 ~~~~ 308 (451)
+++.
T Consensus 191 ~~d~ 194 (678)
T KOG1180|consen 191 YFDP 194 (678)
T ss_pred EecC
Confidence 9884
No 424
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=25.99 E-value=5.5e+02 Score=25.89 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=25.3
Q ss_pred EEcCChhHHHHHHHHHHHCCCCee----------------eecCCCCHHHHHHHHHHh
Q psy10478 236 IYCPTKVICEKVCDVLSRNGIQNR----------------PYHAHISLKQRKEIHGLF 277 (451)
Q Consensus 236 VF~~t~~~~~~l~~~L~~~~~~v~----------------~~h~~l~~~~R~~~~~~f 277 (451)
|.......+..++..|.+.|+-+. .+++.++.++-....+.|
T Consensus 327 v~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l 384 (388)
T COG0156 327 VILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEAL 384 (388)
T ss_pred eEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHH
Confidence 344455668888888887775432 355666665555555444
No 425
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=25.91 E-value=5.7e+02 Score=24.15 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=27.1
Q ss_pred hcCCCChhhhcCcCccccCCCeeEEEeCccccccch
Q psy10478 42 KGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNT 77 (451)
Q Consensus 42 ~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~ 77 (451)
..|..+..+....++.+.+...+|++.|-..-++..
T Consensus 58 ~TS~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgt 93 (275)
T TIGR00762 58 KTSQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGT 93 (275)
T ss_pred CcCCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHH
Confidence 467777888888887766555689999988877654
No 426
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=25.69 E-value=96 Score=30.81 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=32.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.++++||.+-..+...+..|...|+. +..+.||+.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 5678999999988899999999999986 778899874
No 427
>KOG0989|consensus
Probab=25.69 E-value=86 Score=30.43 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=23.0
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCC-CCCEEEEEe
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP-DVPILAVTA 174 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~-~~~~v~lSA 174 (451)
+.+..||+||||.|.. .....+.+....++ ...+++.+-
T Consensus 128 ~~fKiiIlDEcdsmts------daq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 128 PPFKIIILDECDSMTS------DAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred CcceEEEEechhhhhH------HHHHHHHHHHhccccceEEEEEcC
Confidence 4578999999998853 23334444444444 344455443
No 428
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=25.58 E-value=94 Score=29.20 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=11.8
Q ss_pred ccEEEEcccccccc
Q psy10478 132 IVLIAIDEAHCVSQ 145 (451)
Q Consensus 132 l~~vViDEah~~~~ 145 (451)
-++++|||+|.+..
T Consensus 106 ~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 106 GGVLFIDEAYSLAR 119 (261)
T ss_pred CCEEEEechhhhcc
Confidence 36999999999874
No 429
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.05 E-value=1.5e+02 Score=32.05 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=26.0
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATA 176 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~ 176 (451)
++.+++||||+|.+.. .....|....+.+|...++.+.+|-
T Consensus 126 ~~~KVvIIdEad~Lt~------~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 126 GRYRVYIIDEVHMLST------AAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred CCCEEEEEeChhhcCH------HHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 4678999999998864 2334455555555555555555443
No 430
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=25.01 E-value=1e+02 Score=28.11 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=24.0
Q ss_pred cccEEEEccccccccCCCCcHHHH-HHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~-~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
+.+++||||+|.+..+. ...+ ..+..... ....++++|++.++
T Consensus 90 ~~~~liiDdi~~l~~~~---~~~L~~~~~~~~~--~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ---QIALFNLFNRVRA--HGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchH---HHHHHHHHHHHHH--cCCcEEEEeCCCCH
Confidence 56799999999875432 1222 22222211 23446777777654
No 431
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.88 E-value=1.3e+02 Score=32.22 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=24.4
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATA 176 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~ 176 (451)
++.++|||||+|.+.. .....|.......+...++++.+|-
T Consensus 119 ~~~kVvIIDEa~~L~~------~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 119 ARYKVYIIDEVHMLST------AAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred CCeEEEEEeChHhCCH------HHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 4678999999998853 2233444444444444455555543
No 432
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=24.76 E-value=36 Score=37.96 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=33.1
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccch
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNT 77 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~ 77 (451)
+...+.-|-+|+|+|.+.....+... .+.++|+.||.+.+..+
T Consensus 264 ~~~~~~eA~tGtGKT~ayllp~l~~~--~~~~vvI~t~T~~Lq~Q 306 (820)
T PRK07246 264 GPASFIEAQTGIGKTYGYLLPLLAQS--DQRQIIVSVPTKILQDQ 306 (820)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHhc--CCCcEEEEeCcHHHHHH
Confidence 45566778889999999877766543 24689999999998766
No 433
>PHA00012 I assembly protein
Probab=24.21 E-value=1e+02 Score=30.30 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=20.2
Q ss_pred hhhhcCCCChhhhcCcCccccCCCeeEEEeCcc
Q psy10478 39 NHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPE 71 (451)
Q Consensus 39 a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe 71 (451)
.+..+||++..-...+.+.+++|. .|+|--
T Consensus 7 TGkPGSGKSl~aV~~I~~~L~~Gr---~VaTNi 36 (361)
T PHA00012 7 TGKLGAGKTLVAVSRIQDKLVKGC---IVATNL 36 (361)
T ss_pred ecCCCCCchHHHHHHHHHHHHcCC---EEEeCC
Confidence 445678888777667777888885 444443
No 434
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.99 E-value=1.6e+02 Score=29.67 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=38.0
Q ss_pred cccCcccEEEEccccccccCCCCcHHHHHHHHHhhccC-CC-CCEEEEEeeCChHHHHHHHHhcC
Q psy10478 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL-PD-VPILAVTATATPVVIDDICTSLM 189 (451)
Q Consensus 127 ~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~-~~-~~~v~lSAT~~~~~~~~i~~~l~ 189 (451)
..+.+.++|+||++..... + ...+.++..+.... +. -.++.+|||.......++.+.+.
T Consensus 250 ~~~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~ 310 (388)
T PRK12723 250 TQSKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS 310 (388)
T ss_pred HHhCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc
Confidence 4456899999999987642 1 11234444443332 23 45789999998887777766653
No 435
>PF12846 AAA_10: AAA-like domain
Probab=23.95 E-value=67 Score=30.35 Aligned_cols=16 Identities=44% Similarity=0.435 Sum_probs=13.1
Q ss_pred cccEEEEccccccccC
Q psy10478 131 RIVLIAIDEAHCVSQW 146 (451)
Q Consensus 131 ~l~~vViDEah~~~~~ 146 (451)
.-.++++||||.+...
T Consensus 220 ~~~~i~iDEa~~~~~~ 235 (304)
T PF12846_consen 220 RPKIIVIDEAHNFLSN 235 (304)
T ss_pred ceEEEEeCCccccccc
Confidence 4568899999998864
No 436
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=23.93 E-value=1.4e+02 Score=29.12 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=33.5
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICT 186 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~ 186 (451)
+..+++|||+||.|.. ..-..+.+..+.+|..-++++.++-+......|..
T Consensus 107 ~~~kV~iI~~ae~m~~------~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 107 NGYRLFVIEPADAMNE------SASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CCceEEEecchhhhCH------HHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 4689999999999853 33344555566666666666676666655554443
No 437
>KOG0385|consensus
Probab=23.87 E-value=3.6e+02 Score=29.76 Aligned_cols=65 Identities=9% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC-CCCeeeecCCCCHHHHHHHHHHhh-cCCceEEEEc
Q psy10478 222 KLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN-GIQNRPYHAHISLKQRKEIHGLFV-KDLIKVVVAT 288 (451)
Q Consensus 222 ~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~-~~~v~~~h~~l~~~~R~~~~~~f~-~g~~~iLVaT 288 (451)
.++.......+|-||.|+----...+.+.-+=. ++++..|||+ .++|....+.+. .|+.+|+|+|
T Consensus 208 ~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTs 274 (971)
T KOG0385|consen 208 GYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITS 274 (971)
T ss_pred HHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeeh
Confidence 344443446789999998655444443333222 6889999997 578887777654 5788999988
No 438
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=23.73 E-value=19 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=11.6
Q ss_pred ccHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCC
Q psy10478 375 TCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHN 409 (451)
Q Consensus 375 ~Crr~~l~~~f~~~~~~~~~~~~~~~~~Cd~C~~~ 409 (451)
.|-..++.+|+-+.+. ...||+|++.
T Consensus 8 eC~~~f~dSyL~~~F~---------~~VCD~CRD~ 33 (34)
T PF01286_consen 8 ECGKPFMDSYLLNNFD---------LPVCDKCRDK 33 (34)
T ss_dssp TT--EES-SSCCCCTS----------S--TTT-ST
T ss_pred HhCCHHHHHHHHHhCC---------ccccccccCC
Confidence 3555555566665552 4569999764
No 439
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=23.72 E-value=1.2e+02 Score=30.64 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=29.3
Q ss_pred ccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCC
Q psy10478 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191 (451)
Q Consensus 132 l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~ 191 (451)
-.++++||+|.+.+|. . .+..+....+. -+.+|++.+.-........+..+
T Consensus 95 ~~yifLDEIq~v~~W~----~---~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR 145 (398)
T COG1373 95 KSYIFLDEIQNVPDWE----R---ALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGR 145 (398)
T ss_pred CceEEEecccCchhHH----H---HHHHHHccccc--eEEEECCchhhhccchhhhcCCC
Confidence 4699999999998765 2 33333333232 35555555454444555555444
No 440
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=23.49 E-value=2.1e+02 Score=27.87 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCCcEEEEcC-ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhh
Q psy10478 230 FEGSTIIYCP-TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFV 278 (451)
Q Consensus 230 ~~~~~iVF~~-t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~ 278 (451)
.+.+++|||. +-..+..++..|...|+.+..+.||+..- +......+.
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw-~~~~~~~~~ 121 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKAY-RRFVIDQLE 121 (311)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHHH-HHhhhhhhh
Confidence 3445999995 56678889999999999999999997543 333444443
No 441
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=23.28 E-value=1.7e+02 Score=28.16 Aligned_cols=13 Identities=31% Similarity=0.202 Sum_probs=11.5
Q ss_pred cccEEEEcccccc
Q psy10478 131 RIVLIAIDEAHCV 143 (451)
Q Consensus 131 ~l~~vViDEah~~ 143 (451)
..++|||||+|.+
T Consensus 100 ~~~vliiDe~d~l 112 (316)
T PHA02544 100 GGKVIIIDEFDRL 112 (316)
T ss_pred CCeEEEEECcccc
Confidence 5789999999987
No 442
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=23.24 E-value=1.7e+02 Score=29.25 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=30.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
.+.++++||++-..+...+..|...|+ ++..+.|++.
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 93 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFS 93 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHH
Confidence 678899999998788888999999987 4777787754
No 443
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=23.11 E-value=99 Score=31.77 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=24.4
Q ss_pred cccE-EEEccccccccCCC-CcHHHHHHHHHhhccCCCCCEEEEEeeC
Q psy10478 131 RIVL-IAIDEAHCVSQWGH-DFRPSYRCLSELRLPLPDVPILAVTATA 176 (451)
Q Consensus 131 ~l~~-vViDEah~~~~~g~-~fr~~~~~l~~l~~~~~~~~~v~lSAT~ 176 (451)
+-++ +.+||||.+++... .+...+.++.++.+. .++-+.++|=++
T Consensus 254 kPklVfFfDEAHLLF~da~kall~~ieqvvrLIRS-KGVGv~fvTQ~P 300 (502)
T PF05872_consen 254 KPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRS-KGVGVYFVTQNP 300 (502)
T ss_pred CceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhc-cCceEEEEeCCC
Confidence 3445 56999999986431 233333344333322 355566666554
No 444
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=22.82 E-value=1.8e+02 Score=28.45 Aligned_cols=15 Identities=33% Similarity=0.456 Sum_probs=12.4
Q ss_pred CcccEEEEccccccc
Q psy10478 130 PRIVLIAIDEAHCVS 144 (451)
Q Consensus 130 ~~l~~vViDEah~~~ 144 (451)
++-++|||||+|.+.
T Consensus 116 ~~~~vviidea~~l~ 130 (355)
T TIGR02397 116 GKYKVYIIDEVHMLS 130 (355)
T ss_pred CCceEEEEeChhhcC
Confidence 456799999999875
No 445
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=22.77 E-value=1.1e+02 Score=24.86 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=29.5
Q ss_pred HHHHHHH-CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 247 VCDVLSR-NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 247 l~~~L~~-~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
.+++|++ .|+.+..+..+ +.+.+..+.+.+++|+++.+|.|..
T Consensus 36 Ta~~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 36 TGLLIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred HHHHHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcCC
Confidence 4555666 78887766211 1234577999999999998888854
No 446
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=22.75 E-value=1.7e+02 Score=28.07 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=11.7
Q ss_pred cccEEEEccccccc
Q psy10478 131 RIVLIAIDEAHCVS 144 (451)
Q Consensus 131 ~l~~vViDEah~~~ 144 (451)
..++|+|||+|.+.
T Consensus 102 ~~~vviiDe~~~l~ 115 (319)
T PRK00440 102 PFKIIFLDEADNLT 115 (319)
T ss_pred CceEEEEeCcccCC
Confidence 46799999999874
No 447
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=22.75 E-value=1.6e+02 Score=28.44 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=30.7
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
+..+++|||+||.|.. ..-..+.+..+-+|..-++++.+.-+..+...|.
T Consensus 103 ~~~kV~II~~ad~m~~------~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~ 152 (290)
T PRK07276 103 GKQQVFIIKDADKMHV------NAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIK 152 (290)
T ss_pred CCcEEEEeehhhhcCH------HHHHHHHHHhcCCCCCeEEEEEECChhhCchHHH
Confidence 4678999999999853 3334455555666654555555554455544443
No 448
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=22.63 E-value=1.7e+02 Score=24.60 Aligned_cols=82 Identities=10% Similarity=0.017 Sum_probs=41.9
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccc
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGID 296 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD 296 (451)
...+..++.+....+.+++|+|.+.+.++.+-+.|=...-....=|+-.... .....+|+++++.-. -.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 3556666666666899999999999999999988855433222333322110 122357999887643 12
Q ss_pred cCCccEEEEeCCC
Q psy10478 297 KPDVRCVIHYGAP 309 (451)
Q Consensus 297 ~p~v~~VI~~~~p 309 (451)
.+.-+++||.+..
T Consensus 84 ~~~~~vLinL~~~ 96 (137)
T PF04364_consen 84 NNHADVLINLSGE 96 (137)
T ss_dssp -S--SEEEE--SS
T ss_pred CCCCCEEEECCCC
Confidence 2235788887643
No 449
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.43 E-value=2.2e+02 Score=28.29 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=19.8
Q ss_pred HHHHHHhhcCCCCcccccCCCCCCCCCCCCCCCc
Q psy10478 377 RRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNE 410 (451)
Q Consensus 377 rr~~l~~~f~~~~~~~~~~~~~~~~~Cd~C~~~~ 410 (451)
-|-++..|++..... |..||..|....
T Consensus 178 gRC~ls~~~~~~~~n-------~g~c~~~~r~~~ 204 (347)
T COG0826 178 GRCLLSNYFTGRSAN-------RGGCCQPCRWGY 204 (347)
T ss_pred chhhhhhhccCCCCC-------CCCcCCcCcccc
Confidence 366778888877643 677899997665
No 450
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.40 E-value=1.2e+02 Score=31.83 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=12.6
Q ss_pred CcccEEEEccccccc
Q psy10478 130 PRIVLIAIDEAHCVS 144 (451)
Q Consensus 130 ~~l~~vViDEah~~~ 144 (451)
++..++||||+|.+.
T Consensus 115 ~~~kVVIIDEad~ls 129 (504)
T PRK14963 115 GGRKVYILDEAHMMS 129 (504)
T ss_pred CCCeEEEEECccccC
Confidence 467899999999774
No 451
>KOG0392|consensus
Probab=22.35 E-value=96 Score=35.76 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=27.5
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHH
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDD 183 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~ 183 (451)
.+.|+|+||-|-+-.-. ...+..+..+ ..-..+.+|+|+-.....+
T Consensus 1100 ~wNYcVLDEGHVikN~k---tkl~kavkqL----~a~hRLILSGTPIQNnvle 1145 (1549)
T KOG0392|consen 1100 DWNYCVLDEGHVIKNSK---TKLTKAVKQL----RANHRLILSGTPIQNNVLE 1145 (1549)
T ss_pred ccceEEecCcceecchH---HHHHHHHHHH----hhcceEEeeCCCcccCHHH
Confidence 58899999999764311 1222223333 3445688999986544333
No 452
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.32 E-value=1.9e+02 Score=26.62 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
..+.+.+++.. ......|||.+-..+..+.+.|++.|+.
T Consensus 165 ~~~~~~~~l~~---~~~~~ai~~~~d~~a~~~~~~l~~~g~~ 203 (270)
T cd06296 165 GFRAAAELLAL---PERPTAIFAGNDLMALGVYEAARERGLR 203 (270)
T ss_pred HHHHHHHHHhC---CCCCcEEEEcCcHHHHHHHHHHHHhCCC
Confidence 34445555543 2356788898888898999999987653
No 453
>PRK07411 hypothetical protein; Validated
Probab=22.22 E-value=1.2e+02 Score=30.63 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=32.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~ 267 (451)
.+.++++||.+-..+...+..|++.|+....+.||+..
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~~ 378 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGITA 378 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHHH
Confidence 56789999999999999999999999987778888654
No 454
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=22.17 E-value=1e+02 Score=33.10 Aligned_cols=17 Identities=6% Similarity=0.311 Sum_probs=14.0
Q ss_pred cCcccEEEEcccccccc
Q psy10478 129 IPRIVLIAIDEAHCVSQ 145 (451)
Q Consensus 129 l~~l~~vViDEah~~~~ 145 (451)
+.++++||||+.|.+..
T Consensus 375 y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 375 YREMDILLVDDIQFLED 391 (617)
T ss_pred hhcCCEEEEehhccccC
Confidence 35789999999998853
No 455
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=22.07 E-value=1.6e+02 Score=30.44 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=24.0
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEee
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTAT 175 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT 175 (451)
++.+++||||+|.+.. .....|.......++.-++.+.++
T Consensus 120 ~~~kvvIIdead~lt~------~~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK------EAFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred CCCEEEEEecHHhhCH------HHHHHHHHHhhcCCCCceEEEEeC
Confidence 4678999999998853 223444445555444434444444
No 456
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=21.96 E-value=3.5e+02 Score=20.37 Aligned_cols=76 Identities=11% Similarity=0.129 Sum_probs=45.4
Q ss_pred CcEEEEcCChh-H----HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccc--cCCccEEE
Q psy10478 232 GSTIIYCPTKV-I----CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGID--KPDVRCVI 304 (451)
Q Consensus 232 ~~~iVF~~t~~-~----~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD--~p~v~~VI 304 (451)
+++++.|++-. . +..+.+.+.+.++.....|.+++.. . ...+++++|.-+..-++ .+++. ||
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~---------~-~~~Dliitt~~l~~~~~~~~~~~~-vi 69 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDEL---------P-SDADLVVTHASLTDRAKKKAPQAQ-HL 69 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhhC---------C-CCCCEEEEChHHHHHHHhcCCCCe-EE
Confidence 36889996632 2 3445666677788777888876432 2 45789999987766443 22443 44
Q ss_pred EeCCCCCHHHHHHH
Q psy10478 305 HYGAPKDLSAYYQE 318 (451)
Q Consensus 305 ~~~~p~s~~~y~Qr 318 (451)
..+.--+..+|-+.
T Consensus 70 ~v~~~l~~~ei~~i 83 (87)
T cd05567 70 SVDNFLNTPEYDEL 83 (87)
T ss_pred EEeccCChHHHHHH
Confidence 44444444544443
No 457
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=21.67 E-value=1.4e+02 Score=24.37 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCceEEEEccccccccccC------CccEEEEeCC
Q psy10478 271 KEIHGLFVKDLIKVVVATCAFGMGIDKP------DVRCVIHYGA 308 (451)
Q Consensus 271 ~~~~~~f~~g~~~iLVaT~~~~~GiD~p------~v~~VI~~~~ 308 (451)
.++++.+.+|++.+.|-|.-=.-|||++ .-++||.||-
T Consensus 64 ~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD~ 107 (144)
T PF10657_consen 64 PEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFDK 107 (144)
T ss_pred HHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEeccC
Confidence 4677888999999999988777788775 4578999884
No 458
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=21.62 E-value=1.8e+02 Score=28.66 Aligned_cols=51 Identities=6% Similarity=0.087 Sum_probs=34.3
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICT 186 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~ 186 (451)
+..+++|||+||.|.. ..-..+.+..+-+|..-++++.+.-+......|..
T Consensus 107 g~~kV~iI~~ae~m~~------~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 107 GGAKVVWLPDAALLTD------AAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred CCceEEEEcchHhhCH------HHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 5789999999999853 33445555666667666667777665655555443
No 459
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=21.56 E-value=1.5e+02 Score=27.73 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=31.7
Q ss_pred CceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC
Q psy10478 203 PNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254 (451)
Q Consensus 203 ~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~ 254 (451)
..+++....++...+..-.+.++... ..+..|+|+.|+..+....+...+.
T Consensus 36 ngihIIDL~kT~~~l~~A~~~v~~~~-~~~g~ILfVgTK~~a~~~V~~~A~r 86 (252)
T COG0052 36 NGIHIIDLQKTLERLREAYKFLRRIA-ANGGKILFVGTKKQAQEPVKEFAER 86 (252)
T ss_pred CCcEEEEHHHHHHHHHHHHHHHHHHH-cCCCEEEEEechHHHHHHHHHHHHH
Confidence 44454444444444444455555443 5577899999999988877666543
No 460
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=21.53 E-value=1.3e+02 Score=29.21 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=11.7
Q ss_pred cccEEEEccccccc
Q psy10478 131 RIVLIAIDEAHCVS 144 (451)
Q Consensus 131 ~l~~vViDEah~~~ 144 (451)
..++|||||+|.+.
T Consensus 125 ~~~vlilDe~~~l~ 138 (337)
T PRK12402 125 DYKTILLDNAEALR 138 (337)
T ss_pred CCcEEEEeCcccCC
Confidence 46799999999875
No 461
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.52 E-value=37 Score=29.86 Aligned_cols=83 Identities=11% Similarity=0.025 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC-------eeeecCCCCHHHHHHHHHHhhcC--CceE
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ-------NRPYHAHISLKQRKEIHGLFVKD--LIKV 284 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-------v~~~h~~l~~~~R~~~~~~f~~g--~~~i 284 (451)
.....+|.+.+.... .+...++.|=-+...-.+++.++...+. +..||++++.....++....... .-+|
T Consensus 18 ~~ri~ela~~I~~~y-~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdV 96 (178)
T COG0634 18 KARIKELAAQITEDY-GGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDV 96 (178)
T ss_pred HHHHHHHHHHHHHhh-CCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeE
Confidence 345566777776664 4477888888888888899988887543 56799998876666666554432 2357
Q ss_pred EEEcccccccccc
Q psy10478 285 VVATCAFGMGIDK 297 (451)
Q Consensus 285 LVaT~~~~~GiD~ 297 (451)
|+--+++..|..+
T Consensus 97 LiVeDIiDsG~TL 109 (178)
T COG0634 97 LIVEDIIDSGLTL 109 (178)
T ss_pred EEEecccccChhH
Confidence 7777777777654
No 462
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=21.52 E-value=1.3e+02 Score=32.27 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=32.5
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhc
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSL 188 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l 188 (451)
.+.++++|||||-+-. +.+..|.-+... .+..++..|.|-+......+.-.+
T Consensus 298 Q~fnll~VDEA~FI~~------~a~~tilgfm~q-~~~KiIfISS~Nsg~~sTSfL~~L 349 (668)
T PHA03372 298 QNFHLLLVDEAHFIKK------DAFNTILGFLAQ-NTTKIIFISSTNTTNDATCFLTKL 349 (668)
T ss_pred CCCCEEEEehhhccCH------HHHHHhhhhhcc-cCceEEEEeCCCCCCccchHHHhc
Confidence 4789999999997632 334444333222 478899999886554443344333
No 463
>PRK10638 glutaredoxin 3; Provisional
Probab=21.31 E-value=3.5e+02 Score=20.02 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=36.4
Q ss_pred cEEEEc-CChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy10478 233 STIIYC-PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVA 287 (451)
Q Consensus 233 ~~iVF~-~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVa 287 (451)
++.+|. ++...|..+..+|.+.|+....+.-......+....+....+.+++++.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 456666 5678899999999999988777666555555555444333345555543
No 464
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=21.23 E-value=2.8e+02 Score=18.98 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=33.0
Q ss_pred EEEEc-CChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 234 TIIYC-PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 234 ~iVF~-~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
+++|. ++...|..+...|.+.++....+.-....+.+....+.......++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 45555 567889999999999998777666555554444433332233444443
No 465
>KOG2036|consensus
Probab=21.17 E-value=1.9e+02 Score=31.41 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=27.9
Q ss_pred ceEEEEccccccccccCCccEEEEeCCCC--CHHHHHHHhcccCCCC
Q psy10478 282 IKVVVATCAFGMGIDKPDVRCVIHYGAPK--DLSAYYQEIGRAGRDG 326 (451)
Q Consensus 282 ~~iLVaT~~~~~GiD~p~v~~VI~~~~p~--s~~~y~Qr~GRagR~g 326 (451)
+-||+ +++=..+=++|++=+||+..+-. +..+..+-.+|+-|.+
T Consensus 547 LFvLl-~PVd~~~~~iPdvlcviQv~lEG~isr~si~~sL~~G~~a~ 592 (1011)
T KOG2036|consen 547 LFVLL-GPVDPSQNAIPDVLCVIQVCLEGRISRQSIENSLRRGKRAA 592 (1011)
T ss_pred eEEEe-cCcCcccCCCCcceEEEEEeecceecHHHHHHHHhcccccc
Confidence 33444 34444445899999999877665 4445667666666654
No 466
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=21.13 E-value=1e+02 Score=31.62 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=13.9
Q ss_pred ccCcccEEEEccccccc
Q psy10478 128 RIPRIVLIAIDEAHCVS 144 (451)
Q Consensus 128 ~l~~l~~vViDEah~~~ 144 (451)
.+.+.++++|||+|.+.
T Consensus 208 ~~~~~dlLiiDDi~~l~ 224 (450)
T PRK00149 208 KYRSVDVLLIDDIQFLA 224 (450)
T ss_pred HHhcCCEEEEehhhhhc
Confidence 34568899999999875
No 467
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=20.97 E-value=1.9e+02 Score=28.17 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=29.0
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
+..+++|||+||.|.. .....|.+..+.+|+. ++.+.++-+......+
T Consensus 123 ~~~kVvII~~ae~m~~------~aaNaLLK~LEEPp~~-~fILi~~~~~~Ll~TI 170 (314)
T PRK07399 123 APRKVVVIEDAETMNE------AAANALLKTLEEPGNG-TLILIAPSPESLLPTI 170 (314)
T ss_pred CCceEEEEEchhhcCH------HHHHHHHHHHhCCCCC-eEEEEECChHhCcHHH
Confidence 4688999999998853 2334455556666754 4455554444443333
No 468
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.69 E-value=2.6e+02 Score=25.63 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=26.2
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
.+.+.+++.. ...+..|||.+-..+..+...+++.|+.
T Consensus 165 ~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 202 (269)
T cd06293 165 RAAAAQLLAR---GDPPTAIFAASDEIAIGLLEVLRERGLS 202 (269)
T ss_pred HHHHHHHHcC---CCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 3445555543 2346788888888888888888887653
No 469
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=20.68 E-value=49 Score=31.72 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=21.4
Q ss_pred CCchhhhccccCcccEEEEcccccccc
Q psy10478 119 PDVPILFLSRIPRIVLIAIDEAHCVSQ 145 (451)
Q Consensus 119 ~~~~~~~l~~l~~l~~vViDEah~~~~ 145 (451)
|+.....++.+..=+.+.|||.|.++-
T Consensus 91 ~gDlaaiLt~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 91 PGDLAAILTNLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred hhhHHHHHhcCCcCCeEEEehhhhcCh
Confidence 555566677778889999999999863
No 470
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.60 E-value=1.5e+02 Score=29.30 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=23.0
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATA 176 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~ 176 (451)
++.++|||||+|.+... ....+.......+...++.++++-
T Consensus 107 ~~~kiviIDE~~~l~~~------~~~~ll~~le~~~~~~~~Il~~~~ 147 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSA------AFNAFLKTLEEPPAHAIFILATTE 147 (367)
T ss_pred CCcEEEEEeChhhcCHH------HHHHHHHHHhCCCCceEEEEEeCC
Confidence 46789999999977531 223333333333444455555553
No 471
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=20.43 E-value=8.8e+02 Score=25.43 Aligned_cols=51 Identities=12% Similarity=-0.066 Sum_probs=31.8
Q ss_pred CCcEEEEcCChhH-----------HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCC
Q psy10478 231 EGSTIIYCPTKVI-----------CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDL 281 (451)
Q Consensus 231 ~~~~iVF~~t~~~-----------~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~ 281 (451)
-.+++|+++|-++ +-.+|++++..|..|..+--+++.--+..-+-....|+
T Consensus 218 l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A~A~REisl~~ge 279 (502)
T PRK09281 218 MEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRR 279 (502)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHhcCC
Confidence 3567777776554 55677788777888887777777544433333333444
No 472
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=20.29 E-value=5.6e+02 Score=25.63 Aligned_cols=72 Identities=14% Similarity=0.049 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCC----hhHHHHHHHHHHHCCCCeeeecCC---CCHHHHHHHHHHhhcCCceEEEE
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPT----KVICEKVCDVLSRNGIQNRPYHAH---ISLKQRKEIHGLFVKDLIKVVVA 287 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t----~~~~~~l~~~L~~~~~~v~~~h~~---l~~~~R~~~~~~f~~g~~~iLVa 287 (451)
..+..|.+.++.. ..++++|.+.. ....+.+.+.|++.|+.+..|.+- =+.+.-.+..+.++..+.+++|+
T Consensus 17 g~~~~l~~~~~~~--g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iia 94 (383)
T PRK09860 17 DSLTDAMNMMADY--GFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVIS 94 (383)
T ss_pred CHHHHHHHHHHhc--CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 3455555555543 22466655543 124567777777777766555553 23455556666777777777775
Q ss_pred c
Q psy10478 288 T 288 (451)
Q Consensus 288 T 288 (451)
-
T Consensus 95 i 95 (383)
T PRK09860 95 L 95 (383)
T ss_pred e
Confidence 4
No 473
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=20.28 E-value=1.3e+02 Score=28.82 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=27.8
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
++..++||||||.+.. .....+......++....+.+++.-+...
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~~~~i 152 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITNDPSKI 152 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCChhhc
Confidence 4789999999998854 33344555555556555555555444433
No 474
>PHA00350 putative assembly protein
Probab=20.14 E-value=1.4e+02 Score=30.22 Aligned_cols=13 Identities=38% Similarity=0.368 Sum_probs=11.3
Q ss_pred ccEEEEccccccc
Q psy10478 132 IVLIAIDEAHCVS 144 (451)
Q Consensus 132 l~~vViDEah~~~ 144 (451)
=++|||||||.+.
T Consensus 82 gaLIViDEaq~~~ 94 (399)
T PHA00350 82 GALYVIDEAQMIF 94 (399)
T ss_pred CCEEEEECchhhc
Confidence 4699999999885
No 475
>KOG3201|consensus
Probab=20.11 E-value=4.7e+02 Score=23.02 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHH-HHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVIC-EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~-~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g 280 (451)
+.-+.|.+.|....++.+++|+|.+.+... +...+.....|+ ...+|-..+..--+......+.+
T Consensus 117 E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf-~v~l~enyde~iwqrh~~Lkk~~ 182 (201)
T KOG3201|consen 117 EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGF-TVCLEENYDEAIWQRHGRLKKGD 182 (201)
T ss_pred HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhcee-EEEecccHhHHHHHHHHHHhcCC
Confidence 445567777777777889999999998765 334444455564 44567776655545555444444
Done!