Query psy10478
Match_columns 451
No_of_seqs 404 out of 3710
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 19:12:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oyw_A RECQ helicase, ATP-depe 100.0 1.1E-55 3.7E-60 459.2 28.9 335 36-449 89-423 (523)
2 2v1x_A ATP-dependent DNA helic 100.0 1.1E-55 3.9E-60 463.9 25.8 341 36-450 108-454 (591)
3 2db3_A ATP-dependent RNA helic 100.0 2.4E-37 8.2E-42 314.8 22.5 306 23-338 83-407 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 2.3E-37 7.8E-42 326.2 14.2 310 32-347 59-407 (579)
5 3i5x_A ATP-dependent RNA helic 100.0 7.2E-37 2.5E-41 321.4 17.7 310 32-347 110-458 (563)
6 2i4i_A ATP-dependent RNA helic 100.0 8.4E-36 2.9E-40 301.2 18.7 316 23-346 42-391 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 2.5E-35 8.5E-40 297.3 20.8 311 23-344 64-389 (410)
8 3eiq_A Eukaryotic initiation f 100.0 1.2E-35 4.1E-40 299.7 17.3 310 25-345 69-394 (414)
9 1s2m_A Putative ATP-dependent 100.0 5.6E-35 1.9E-39 293.7 20.2 311 24-345 49-372 (400)
10 3fht_A ATP-dependent RNA helic 100.0 1.4E-34 4.8E-39 291.5 23.1 296 34-339 65-380 (412)
11 1hv8_A Putative ATP-dependent 100.0 1.3E-34 4.5E-39 286.9 22.0 301 34-346 45-353 (367)
12 1xti_A Probable ATP-dependent 100.0 1.8E-34 6.2E-39 288.8 21.7 309 23-340 35-359 (391)
13 3pey_A ATP-dependent RNA helic 100.0 2.6E-34 9.1E-39 287.5 21.4 297 34-341 45-359 (395)
14 3fmp_B ATP-dependent RNA helic 100.0 5.7E-36 2E-40 308.5 5.4 297 33-339 131-447 (479)
15 4gl2_A Interferon-induced heli 100.0 7.3E-35 2.5E-39 313.8 5.8 157 231-389 400-585 (699)
16 2z0m_A 337AA long hypothetical 100.0 3.2E-33 1.1E-37 273.8 16.5 300 26-346 24-330 (337)
17 4a4z_A Antiviral helicase SKI2 100.0 9.8E-33 3.3E-37 304.8 15.5 356 31-410 52-578 (997)
18 1fuu_A Yeast initiation factor 100.0 4.4E-34 1.5E-38 286.2 2.8 305 31-346 56-374 (394)
19 3fho_A ATP-dependent RNA helic 100.0 6.3E-33 2.2E-37 287.6 10.2 294 34-338 159-470 (508)
20 3oiy_A Reverse gyrase helicase 100.0 3.7E-32 1.3E-36 274.8 12.6 241 35-336 90-363 (414)
21 2ykg_A Probable ATP-dependent 100.0 1E-31 3.5E-36 289.1 14.7 126 216-343 381-521 (696)
22 2va8_A SSO2462, SKI2-type heli 100.0 6E-30 2E-34 276.1 25.6 293 30-340 43-410 (715)
23 2zj8_A DNA helicase, putative 100.0 9.2E-30 3.2E-34 274.7 21.9 294 30-341 36-390 (720)
24 2p6r_A Afuhel308 helicase; pro 100.0 9.2E-30 3.2E-34 273.9 19.3 296 31-342 38-392 (702)
25 3l9o_A ATP-dependent RNA helic 100.0 1.8E-30 6.3E-35 289.0 14.2 301 31-348 197-608 (1108)
26 2xgj_A ATP-dependent RNA helic 100.0 1.7E-29 5.8E-34 279.0 20.7 299 32-349 100-511 (1010)
27 1yks_A Genome polyprotein [con 100.0 1.1E-30 3.6E-35 265.8 8.4 264 32-342 7-306 (440)
28 4a2p_A RIG-I, retinoic acid in 100.0 7.5E-30 2.6E-34 267.0 15.1 303 33-342 22-512 (556)
29 1wp9_A ATP-dependent RNA helic 100.0 4.9E-29 1.7E-33 255.2 18.7 301 35-343 25-480 (494)
30 4a2w_A RIG-I, retinoic acid in 100.0 3.2E-29 1.1E-33 276.6 15.3 111 229-341 629-752 (936)
31 3tbk_A RIG-I helicase domain; 100.0 1.1E-29 3.9E-34 265.3 11.0 303 33-343 19-512 (555)
32 2whx_A Serine protease/ntpase/ 100.0 2.2E-29 7.4E-34 265.3 11.0 270 27-342 180-485 (618)
33 2wv9_A Flavivirin protease NS2 100.0 3.9E-29 1.3E-33 265.1 11.4 262 32-340 240-538 (673)
34 2z83_A Helicase/nucleoside tri 100.0 1.2E-29 4.1E-34 259.5 6.0 260 28-338 16-313 (459)
35 4f92_B U5 small nuclear ribonu 100.0 2.5E-28 8.6E-33 281.0 17.3 322 22-352 931-1322(1724)
36 2jlq_A Serine protease subunit 100.0 1E-28 3.5E-33 252.1 11.6 267 34-337 20-310 (451)
37 4ddu_A Reverse gyrase; topoiso 100.0 1.9E-28 6.4E-33 272.8 13.8 213 35-310 147-388 (1104)
38 4a2q_A RIG-I, retinoic acid in 100.0 3.2E-28 1.1E-32 265.3 14.4 111 229-341 629-752 (797)
39 1gku_B Reverse gyrase, TOP-RG; 100.0 8.4E-30 2.9E-34 283.6 1.3 301 25-343 63-459 (1054)
40 1gm5_A RECG; helicase, replica 99.9 1.4E-28 4.9E-33 263.9 10.6 239 36-337 445-696 (780)
41 2v6i_A RNA helicase; membrane, 99.9 9.8E-29 3.3E-33 250.7 8.6 256 34-335 3-288 (431)
42 4f92_B U5 small nuclear ribonu 99.9 1.2E-27 4E-32 275.4 16.2 309 31-350 93-485 (1724)
43 2hjv_A ATP-dependent RNA helic 99.9 1.9E-26 6.4E-31 202.6 19.6 144 201-346 6-150 (163)
44 2eyq_A TRCF, transcription-rep 99.9 1.6E-27 5.5E-32 266.9 15.7 287 35-339 626-923 (1151)
45 2xau_A PRE-mRNA-splicing facto 99.9 8.2E-28 2.8E-32 259.3 12.1 302 22-340 98-445 (773)
46 2oca_A DAR protein, ATP-depend 99.9 2.3E-28 8E-33 253.6 6.5 291 33-336 128-453 (510)
47 1tf5_A Preprotein translocase 99.9 9E-27 3.1E-31 246.2 18.4 126 213-340 414-547 (844)
48 2rb4_A ATP-dependent RNA helic 99.9 6.1E-26 2.1E-30 201.8 16.9 129 214-344 19-153 (175)
49 3eaq_A Heat resistant RNA depe 99.9 6.9E-26 2.4E-30 207.7 17.8 133 212-346 14-146 (212)
50 1t5i_A C_terminal domain of A 99.9 7.7E-26 2.6E-30 200.5 16.8 127 211-339 13-139 (172)
51 3o8b_A HCV NS3 protease/helica 99.9 2.5E-27 8.4E-32 248.2 7.7 268 28-342 227-518 (666)
52 1fuk_A Eukaryotic initiation f 99.9 8.7E-26 3E-30 198.8 15.9 129 214-344 15-143 (165)
53 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.5E-25 5E-30 201.1 15.8 144 202-346 17-161 (185)
54 2p6n_A ATP-dependent RNA helic 99.9 2.2E-25 7.6E-30 200.8 16.6 124 212-338 38-161 (191)
55 2fwr_A DNA repair protein RAD2 99.9 4.5E-27 1.5E-31 241.5 5.2 268 34-333 109-447 (472)
56 3rc3_A ATP-dependent RNA helic 99.9 3.8E-25 1.3E-29 234.0 18.6 273 33-349 155-455 (677)
57 2fsf_A Preprotein translocase 99.9 5.5E-25 1.9E-29 232.0 16.8 125 214-340 424-585 (853)
58 1c4o_A DNA nucleotide excision 99.9 2E-24 6.8E-29 229.6 21.2 215 117-346 314-558 (664)
59 3i32_A Heat resistant RNA depe 99.9 8.4E-25 2.9E-29 210.2 16.6 136 209-346 8-143 (300)
60 3h1t_A Type I site-specific re 99.9 3.4E-25 1.2E-29 233.8 14.4 275 34-327 199-545 (590)
61 2d7d_A Uvrabc system protein B 99.9 6.4E-24 2.2E-28 225.6 21.8 215 117-344 320-562 (661)
62 1nkt_A Preprotein translocase 99.9 7.4E-24 2.5E-28 223.8 18.3 125 214-340 443-619 (922)
63 2yjt_D ATP-dependent RNA helic 99.8 6.6E-26 2.3E-30 200.6 0.0 131 214-346 15-145 (170)
64 3dmq_A RNA polymerase-associat 99.9 1.2E-23 4.1E-28 232.6 16.7 119 215-335 489-610 (968)
65 1z63_A Helicase of the SNF2/RA 99.9 4.3E-23 1.5E-27 213.4 14.1 121 218-338 328-453 (500)
66 3jux_A Protein translocase sub 99.9 2.2E-21 7.5E-26 201.0 19.9 167 168-340 411-589 (822)
67 3mwy_W Chromo domain-containin 99.8 3.2E-20 1.1E-24 202.0 14.9 123 216-338 557-684 (800)
68 1z3i_X Similar to RAD54-like; 99.8 1.4E-19 4.9E-24 192.2 18.6 104 230-333 415-521 (644)
69 1z5z_A Helicase of the SNF2/RA 99.8 1.5E-18 5.2E-23 164.5 10.0 125 214-338 95-224 (271)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.7E-18 5.8E-23 190.6 11.6 286 33-336 300-707 (1038)
71 3iuy_A Probable ATP-dependent 99.2 1.4E-11 4.8E-16 113.3 4.8 164 23-196 47-226 (228)
72 3fmo_B ATP-dependent RNA helic 99.1 2.8E-11 9.6E-16 116.3 5.6 157 34-198 132-297 (300)
73 3fe2_A Probable ATP-dependent 99.1 1.9E-11 6.6E-16 113.6 3.5 167 24-199 57-238 (242)
74 3bor_A Human initiation factor 99.1 2.7E-11 9.3E-16 112.2 2.9 168 24-198 58-234 (237)
75 2ipc_A Preprotein translocase 99.1 7.6E-09 2.6E-13 109.8 20.2 165 168-339 380-699 (997)
76 3dkp_A Probable ATP-dependent 99.1 5.6E-11 1.9E-15 110.5 3.7 173 23-199 56-241 (245)
77 3ly5_A ATP-dependent RNA helic 99.1 2.3E-11 7.9E-16 114.6 0.9 158 24-188 82-254 (262)
78 1q0u_A Bstdead; DEAD protein, 99.0 5.4E-11 1.8E-15 108.7 3.0 174 24-204 32-217 (219)
79 1wrb_A DJVLGB; RNA helicase, D 99.0 1.2E-10 4E-15 109.0 4.3 161 32-199 59-240 (253)
80 1qde_A EIF4A, translation init 99.0 2.2E-10 7.4E-15 104.9 4.9 166 24-198 42-216 (224)
81 2pl3_A Probable ATP-dependent 99.0 1.7E-10 5.7E-15 106.7 4.1 167 24-199 53-233 (236)
82 1vec_A ATP-dependent RNA helic 99.0 4E-10 1.4E-14 101.7 6.5 165 24-196 31-205 (206)
83 3ber_A Probable ATP-dependent 99.0 1.3E-10 4.4E-15 108.6 2.6 167 23-198 70-247 (249)
84 1t6n_A Probable ATP-dependent 99.0 9.6E-11 3.3E-15 107.0 1.7 167 23-196 41-218 (220)
85 2gxq_A Heat resistant RNA depe 99.0 1.4E-10 4.9E-15 104.7 2.8 163 25-198 30-205 (207)
86 2oxc_A Probable ATP-dependent 98.9 3.6E-10 1.2E-14 104.1 4.0 168 24-198 52-228 (230)
87 2vl7_A XPD; helicase, unknown 98.5 3.4E-08 1.2E-12 102.5 3.6 98 230-333 383-517 (540)
88 4a15_A XPD helicase, ATP-depen 98.3 3.9E-06 1.3E-10 88.3 14.1 161 167-337 376-583 (620)
89 1rif_A DAR protein, DNA helica 98.3 1.6E-07 5.6E-12 89.0 2.8 136 34-180 129-266 (282)
90 3llm_A ATP-dependent RNA helic 98.3 1.1E-07 3.6E-12 87.8 1.4 145 32-189 75-228 (235)
91 3b6e_A Interferon-induced heli 98.0 2.9E-07 9.9E-12 83.1 -2.4 139 33-175 48-216 (216)
92 3crv_A XPD/RAD3 related DNA he 98.0 0.00013 4.3E-09 75.8 16.8 135 167-310 316-473 (551)
93 2fz4_A DNA repair protein RAD2 97.8 4.6E-06 1.6E-10 76.8 1.8 122 35-180 110-232 (237)
94 3hgt_A HDA1 complex subunit 3; 97.2 0.0021 7.1E-08 61.2 11.4 126 214-344 108-243 (328)
95 1gm5_A RECG; helicase, replica 95.2 0.047 1.6E-06 58.6 8.8 79 230-308 416-499 (780)
96 3oiy_A Reverse gyrase helicase 95.0 0.069 2.4E-06 52.6 9.0 78 230-307 63-147 (414)
97 4ddu_A Reverse gyrase; topoiso 93.2 0.15 5.2E-06 56.9 7.9 77 230-307 120-204 (1104)
98 2eyq_A TRCF, transcription-rep 92.4 0.3 1E-05 54.9 8.8 76 230-305 651-731 (1151)
99 1t6n_A Probable ATP-dependent 90.1 1.3 4.5E-05 39.0 9.1 72 231-305 82-164 (220)
100 1oyw_A RECQ helicase, ATP-depe 89.6 0.74 2.5E-05 46.9 7.9 59 231-289 65-123 (523)
101 3sqw_A ATP-dependent RNA helic 89.5 0.025 8.5E-07 58.7 -3.3 52 57-110 145-198 (579)
102 2v1x_A ATP-dependent DNA helic 89.2 0.68 2.3E-05 48.0 7.4 60 230-289 83-144 (591)
103 3fe2_A Probable ATP-dependent 89.2 1.5 5E-05 39.4 8.9 72 230-305 101-182 (242)
104 3i5x_A ATP-dependent RNA helic 88.5 0.031 1.1E-06 57.7 -3.4 52 57-110 196-249 (563)
105 3ber_A Probable ATP-dependent 87.9 3 0.0001 37.6 10.2 72 230-305 110-192 (249)
106 2pl3_A Probable ATP-dependent 86.6 1.4 4.8E-05 39.2 7.0 71 230-305 96-177 (236)
107 2oxc_A Probable ATP-dependent 86.5 1.9 6.5E-05 38.3 7.9 71 230-305 91-172 (230)
108 2gxq_A Heat resistant RNA depe 85.8 2.5 8.5E-05 36.6 8.1 72 230-305 71-150 (207)
109 1vec_A ATP-dependent RNA helic 85.6 2.7 9.2E-05 36.3 8.2 72 230-305 70-152 (206)
110 3bor_A Human initiation factor 85.2 1.8 6.1E-05 38.7 7.0 73 230-305 97-179 (237)
111 1xti_A Probable ATP-dependent 85.2 3 0.0001 39.9 9.1 73 230-305 75-158 (391)
112 3iuy_A Probable ATP-dependent 85.0 2.2 7.5E-05 37.7 7.4 72 230-305 93-173 (228)
113 3ly5_A ATP-dependent RNA helic 83.5 3.6 0.00012 37.4 8.4 72 230-305 125-207 (262)
114 1wrb_A DJVLGB; RNA helicase, D 83.2 3.2 0.00011 37.3 7.9 72 230-305 99-180 (253)
115 3fmo_B ATP-dependent RNA helic 83.0 0.36 1.2E-05 45.4 1.3 39 61-99 209-249 (300)
116 3gk5_A Uncharacterized rhodane 82.5 2 6.8E-05 33.3 5.3 37 230-266 54-90 (108)
117 2db3_A ATP-dependent RNA helic 80.3 3.7 0.00013 40.5 7.6 72 230-305 128-209 (434)
118 1qde_A EIF4A, translation init 79.2 2.7 9.3E-05 36.9 5.7 71 230-305 81-161 (224)
119 3dkp_A Probable ATP-dependent 78.7 1.4 4.6E-05 39.6 3.5 73 230-305 97-181 (245)
120 3crv_A XPD/RAD3 related DNA he 77.8 0.82 2.8E-05 46.9 2.0 17 131-148 173-189 (551)
121 1q0u_A Bstdead; DEAD protein, 77.1 2.2 7.6E-05 37.4 4.5 72 230-305 71-156 (219)
122 1gku_B Reverse gyrase, TOP-RG; 76.5 3.7 0.00013 45.5 6.9 74 230-305 98-181 (1054)
123 1wp9_A ATP-dependent RNA helic 76.4 7.9 0.00027 37.8 8.8 71 230-305 51-131 (494)
124 3g5j_A Putative ATP/GTP bindin 76.3 3.5 0.00012 32.9 5.1 38 230-267 87-126 (134)
125 3foj_A Uncharacterized protein 76.0 2 6.8E-05 32.7 3.3 37 230-266 55-91 (100)
126 2i4i_A ATP-dependent RNA helic 75.9 8.2 0.00028 37.2 8.6 70 232-305 102-181 (417)
127 3hix_A ALR3790 protein; rhodan 75.5 3.9 0.00013 31.4 5.0 37 230-266 51-88 (106)
128 3eme_A Rhodanese-like domain p 75.3 1.9 6.6E-05 33.0 3.1 37 230-266 55-91 (103)
129 3iwh_A Rhodanese-like domain p 75.2 2 6.7E-05 33.2 3.1 36 230-265 55-90 (103)
130 1wv9_A Rhodanese homolog TT165 74.9 2.7 9.4E-05 31.5 3.8 35 232-266 54-88 (94)
131 1fuu_A Yeast initiation factor 74.4 8.3 0.00028 36.7 8.1 71 230-305 88-168 (394)
132 1gmx_A GLPE protein; transfera 72.2 4.7 0.00016 31.0 4.7 38 230-267 57-95 (108)
133 3flh_A Uncharacterized protein 71.6 3.5 0.00012 32.8 3.9 47 219-266 60-108 (124)
134 2vl7_A XPD; helicase, unknown 70.9 1.4 4.9E-05 45.0 1.7 15 131-145 175-189 (540)
135 2j0s_A ATP-dependent RNA helic 70.5 14 0.00049 35.4 8.9 72 230-305 104-185 (410)
136 1s2m_A Putative ATP-dependent 69.8 13 0.00043 35.6 8.3 72 230-305 88-169 (400)
137 1hv8_A Putative ATP-dependent 69.4 16 0.00055 34.1 8.8 71 230-305 73-153 (367)
138 2fsx_A RV0390, COG0607: rhodan 68.2 5.7 0.0002 32.5 4.6 37 230-266 79-116 (148)
139 2k0z_A Uncharacterized protein 67.6 6.8 0.00023 30.2 4.7 37 230-266 55-91 (110)
140 2p6r_A Afuhel308 helicase; pro 67.6 1.3 4.3E-05 46.9 0.5 41 61-101 113-154 (702)
141 2jtq_A Phage shock protein E; 66.9 10 0.00035 27.5 5.4 36 230-266 40-76 (85)
142 3ilm_A ALR3790 protein; rhodan 66.3 7.5 0.00026 31.7 4.9 37 230-266 55-92 (141)
143 2zj8_A DNA helicase, putative 65.3 1.1 3.7E-05 47.6 -0.6 41 61-101 113-154 (720)
144 1qxn_A SUD, sulfide dehydrogen 65.1 4.7 0.00016 32.7 3.4 37 230-266 81-118 (137)
145 3tbk_A RIG-I helicase domain; 64.8 5.5 0.00019 40.1 4.6 71 231-305 52-133 (555)
146 1w36_D RECD, exodeoxyribonucle 64.7 7.3 0.00025 40.3 5.6 37 131-175 262-298 (608)
147 1tf5_A Preprotein translocase 64.6 18 0.00061 38.7 8.5 54 230-289 123-180 (844)
148 2fsf_A Preprotein translocase 64.5 16 0.00055 39.1 8.1 54 230-289 114-171 (853)
149 4a2q_A RIG-I, retinoic acid in 64.5 9.1 0.00031 40.9 6.5 71 231-305 296-377 (797)
150 4a2p_A RIG-I, retinoic acid in 64.5 12 0.00042 37.6 7.2 71 231-305 55-136 (556)
151 3eiq_A Eukaryotic initiation f 64.3 21 0.00071 34.2 8.6 73 230-305 107-189 (414)
152 3nhv_A BH2092 protein; alpha-b 64.0 4.6 0.00016 33.1 3.2 37 230-266 71-109 (144)
153 2ykg_A Probable ATP-dependent 63.1 7.9 0.00027 40.5 5.6 71 231-305 61-142 (696)
154 1tq1_A AT5G66040, senescence-a 63.0 4.5 0.00015 32.4 2.8 37 230-266 81-118 (129)
155 3d1p_A Putative thiosulfate su 62.7 5.5 0.00019 32.2 3.4 37 230-266 90-127 (139)
156 2va8_A SSO2462, SKI2-type heli 62.4 2 7E-05 45.4 0.8 39 62-100 121-160 (715)
157 2hhg_A Hypothetical protein RP 62.1 5 0.00017 32.4 3.1 37 230-266 85-122 (139)
158 3b6e_A Interferon-induced heli 61.6 5.3 0.00018 34.5 3.3 56 230-289 81-140 (216)
159 3ipz_A Monothiol glutaredoxin- 60.5 35 0.0012 26.1 7.6 57 230-286 16-78 (109)
160 2z0m_A 337AA long hypothetical 60.2 16 0.00054 33.8 6.7 70 231-305 56-135 (337)
161 1rif_A DAR protein, DNA helica 60.1 4 0.00014 37.4 2.4 36 61-98 203-238 (282)
162 3fht_A ATP-dependent RNA helic 59.0 2 6.8E-05 41.6 0.0 40 60-99 141-182 (412)
163 1nkt_A Preprotein translocase 58.9 21 0.00073 38.4 7.8 54 230-289 151-208 (922)
164 1vee_A Proline-rich protein fa 58.7 7.4 0.00025 31.3 3.5 37 230-266 73-110 (134)
165 3llm_A ATP-dependent RNA helic 58.6 1.8 6.2E-05 38.7 -0.3 35 60-96 153-187 (235)
166 2ipc_A Preprotein translocase 58.6 21 0.00071 38.6 7.6 54 230-289 119-176 (997)
167 2l82_A Designed protein OR32; 58.6 37 0.0013 26.0 7.0 103 234-341 5-116 (162)
168 3zyw_A Glutaredoxin-3; metal b 57.5 51 0.0017 25.3 8.2 64 218-286 7-76 (111)
169 2yan_A Glutaredoxin-3; oxidore 52.0 59 0.002 24.3 7.7 55 232-286 17-77 (105)
170 3l9o_A ATP-dependent RNA helic 51.7 12 0.0004 41.8 4.6 65 230-305 226-296 (1108)
171 2gno_A DNA polymerase III, gam 51.5 13 0.00045 34.6 4.4 45 130-180 81-125 (305)
172 2lnd_A De novo designed protei 50.9 67 0.0023 23.1 7.1 60 217-277 37-98 (112)
173 4a2w_A RIG-I, retinoic acid in 49.9 14 0.0005 40.2 5.0 71 231-305 296-377 (936)
174 4gl2_A Interferon-induced heli 49.5 4.5 0.00015 42.4 0.8 72 230-305 55-142 (699)
175 1urh_A 3-mercaptopyruvate sulf 49.0 18 0.00062 32.9 4.9 49 219-267 217-267 (280)
176 2oca_A DAR protein, ATP-depend 47.5 21 0.00072 35.6 5.5 70 230-306 156-232 (510)
177 2r2a_A Uncharacterized protein 47.0 10 0.00034 33.0 2.6 14 131-144 87-100 (199)
178 3dmn_A Putative DNA helicase; 45.9 1.3E+02 0.0044 25.0 10.9 64 230-308 60-123 (174)
179 3to5_A CHEY homolog; alpha(5)b 45.6 25 0.00086 28.2 4.7 95 58-183 8-104 (134)
180 1a5t_A Delta prime, HOLB; zinc 45.3 23 0.00079 33.3 5.1 49 130-184 107-155 (334)
181 4f67_A UPF0176 protein LPG2838 45.3 29 0.00098 31.6 5.5 38 230-267 180-218 (265)
182 2fwr_A DNA repair protein RAD2 44.2 15 0.00053 36.2 3.8 46 231-289 133-179 (472)
183 3tg1_B Dual specificity protei 44.0 16 0.00055 30.1 3.3 37 230-266 92-137 (158)
184 3gx8_A Monothiol glutaredoxin- 43.6 99 0.0034 24.0 7.9 64 217-285 6-78 (121)
185 2fz4_A DNA repair protein RAD2 43.5 21 0.00073 31.6 4.3 46 231-289 133-179 (237)
186 1e0c_A Rhodanese, sulfurtransf 42.4 19 0.00063 32.7 3.8 38 229-266 221-259 (271)
187 1uar_A Rhodanese; sulfurtransf 42.1 33 0.0011 31.2 5.5 49 218-266 219-270 (285)
188 2eg4_A Probable thiosulfate su 41.2 18 0.00061 31.9 3.4 37 230-266 183-219 (230)
189 2wci_A Glutaredoxin-4; redox-a 40.8 1.1E+02 0.0038 24.4 7.9 66 216-286 24-95 (135)
190 1urh_A 3-mercaptopyruvate sulf 40.8 26 0.0009 31.8 4.6 37 230-266 85-123 (280)
191 3e4c_A Caspase-1; zymogen, inf 40.6 50 0.0017 30.6 6.5 48 231-279 60-118 (302)
192 1rhs_A Sulfur-substituted rhod 39.9 29 0.00099 31.9 4.7 48 219-266 227-276 (296)
193 2wem_A Glutaredoxin-related pr 39.0 1.3E+02 0.0046 23.2 8.6 64 218-286 11-81 (118)
194 1wik_A Thioredoxin-like protei 38.2 1E+02 0.0034 23.2 7.0 55 231-285 14-74 (109)
195 3aay_A Putative thiosulfate su 38.1 40 0.0014 30.4 5.4 48 219-266 213-263 (277)
196 3hzu_A Thiosulfate sulfurtrans 35.9 32 0.0011 32.1 4.4 48 218-266 247-296 (318)
197 3pey_A ATP-dependent RNA helic 35.9 52 0.0018 30.9 6.1 68 230-305 74-151 (395)
198 1e0c_A Rhodanese, sulfurtransf 35.6 40 0.0014 30.3 5.0 37 230-266 80-118 (271)
199 3hzu_A Thiosulfate sulfurtrans 35.5 45 0.0015 31.1 5.3 37 230-266 110-148 (318)
200 3olh_A MST, 3-mercaptopyruvate 35.4 27 0.00093 32.3 3.8 50 218-267 240-291 (302)
201 3f6c_A Positive transcription 34.9 46 0.0016 25.5 4.7 46 131-183 46-91 (134)
202 3k4h_A Putative transcriptiona 34.1 47 0.0016 29.7 5.2 40 215-257 178-217 (292)
203 1g5t_A COB(I)alamin adenosyltr 33.5 27 0.00093 30.2 3.2 48 130-180 119-166 (196)
204 3hjh_A Transcription-repair-co 33.4 34 0.0012 34.1 4.3 76 217-307 371-446 (483)
205 3upu_A ATP-dependent DNA helic 32.9 34 0.0012 33.7 4.2 40 35-74 47-86 (459)
206 2kjq_A DNAA-related protein; s 32.6 37 0.0013 27.6 3.7 15 130-144 82-96 (149)
207 3egc_A Putative ribose operon 32.5 25 0.00086 31.7 3.0 38 217-257 174-211 (291)
208 2wlr_A Putative thiosulfate su 32.1 48 0.0016 32.2 5.1 50 218-267 189-240 (423)
209 3qk7_A Transcriptional regulat 31.7 1E+02 0.0034 27.7 7.0 40 215-257 173-212 (294)
210 4fn4_A Short chain dehydrogena 31.7 1.9E+02 0.0064 25.8 8.7 60 230-289 30-92 (254)
211 1uar_A Rhodanese; sulfurtransf 31.6 40 0.0014 30.6 4.3 37 230-266 78-116 (285)
212 3i2v_A Adenylyltransferase and 31.5 21 0.00072 27.8 2.0 37 231-267 72-115 (127)
213 2chg_A Replication factor C sm 31.5 43 0.0015 28.3 4.2 15 131-145 102-116 (226)
214 1njg_A DNA polymerase III subu 31.1 49 0.0017 28.3 4.6 14 131-144 126-139 (250)
215 2orw_A Thymidine kinase; TMTK, 31.0 41 0.0014 28.5 3.9 14 131-144 76-89 (184)
216 2xgj_A ATP-dependent RNA helic 30.6 40 0.0014 37.1 4.6 64 230-304 128-197 (1010)
217 2h54_A Caspase-1; allosteric s 30.6 95 0.0032 26.2 6.1 48 231-279 43-101 (178)
218 3dbi_A Sugar-binding transcrip 30.4 37 0.0013 31.5 3.8 39 216-257 229-267 (338)
219 3h11_B Caspase-8; cell death, 30.2 82 0.0028 28.6 6.0 39 240-279 47-85 (271)
220 2eg4_A Probable thiosulfate su 29.6 73 0.0025 27.8 5.5 43 220-264 51-95 (230)
221 3o8b_A HCV NS3 protease/helica 29.5 76 0.0026 33.0 6.3 68 230-308 256-327 (666)
222 1t5i_A C_terminal domain of A 29.4 20 0.00068 30.0 1.6 36 36-71 55-90 (172)
223 2ouc_A Dual specificity protei 29.4 31 0.0011 27.3 2.7 36 231-266 83-127 (142)
224 3aay_A Putative thiosulfate su 29.3 64 0.0022 29.0 5.2 37 230-266 76-114 (277)
225 1fov_A Glutaredoxin 3, GRX3; a 29.2 1.4E+02 0.0047 20.4 6.2 54 233-286 2-56 (82)
226 1jr3_A DNA polymerase III subu 28.9 52 0.0018 30.8 4.7 42 130-177 118-159 (373)
227 3eaq_A Heat resistant RNA depe 28.8 26 0.00088 30.4 2.3 36 36-71 55-90 (212)
228 3cz5_A Two-component response 27.9 78 0.0027 24.9 5.0 46 131-183 51-96 (153)
229 1iqp_A RFCS; clamp loader, ext 27.4 55 0.0019 29.9 4.5 14 131-144 110-123 (327)
230 2b8t_A Thymidine kinase; deoxy 27.4 51 0.0017 29.1 3.9 14 131-144 89-102 (223)
231 3eul_A Possible nitrate/nitrit 27.4 54 0.0019 25.9 3.9 47 131-184 61-107 (152)
232 3fmp_B ATP-dependent RNA helic 27.4 75 0.0026 31.1 5.7 69 230-305 161-241 (479)
233 2wlr_A Putative thiosulfate su 27.2 68 0.0023 31.1 5.2 48 219-266 345-394 (423)
234 2hjv_A ATP-dependent RNA helic 27.2 28 0.00095 28.6 2.1 35 36-70 59-93 (163)
235 4a4z_A Antiviral helicase SKI2 27.0 59 0.002 35.7 5.1 49 230-289 81-131 (997)
236 3ntd_A FAD-dependent pyridine 26.2 45 0.0015 33.6 3.8 37 230-266 523-559 (565)
237 3kto_A Response regulator rece 26.1 1.2E+02 0.004 23.3 5.7 49 130-183 49-97 (136)
238 3tla_A MCCF; serine protease, 26.0 1.7E+02 0.0057 28.0 7.6 60 229-289 41-117 (371)
239 3h11_A CAsp8 and FADD-like apo 26.0 34 0.0012 31.3 2.6 49 230-279 42-90 (272)
240 3h1g_A Chemotaxis protein CHEY 25.4 96 0.0033 23.5 5.0 46 131-183 51-98 (129)
241 2chq_A Replication factor C sm 25.1 44 0.0015 30.4 3.3 14 131-144 102-115 (319)
242 4e5s_A MCCFLIKE protein (BA_56 25.1 1.9E+02 0.0064 27.1 7.7 59 229-288 10-85 (331)
243 1qtn_A Caspase-8; apoptosis, d 25.1 1.7E+02 0.0057 24.3 6.6 40 240-280 53-92 (164)
244 3jy6_A Transcriptional regulat 25.0 3.4E+02 0.012 23.6 10.8 39 216-257 168-206 (276)
245 4ag6_A VIRB4 ATPase, type IV s 24.9 49 0.0017 31.7 3.6 15 131-145 262-276 (392)
246 2yjt_D ATP-dependent RNA helic 30.8 15 0.00053 30.5 0.0 35 36-70 54-88 (170)
247 3sir_A Caspase; hydrolase; 2.6 24.9 94 0.0032 28.0 5.4 55 240-296 42-99 (259)
248 2khp_A Glutaredoxin; thioredox 24.8 1.9E+02 0.0064 20.5 7.4 53 233-285 7-60 (92)
249 4e7p_A Response regulator; DNA 24.6 1.2E+02 0.004 23.7 5.5 48 130-184 65-112 (150)
250 3sr3_A Microcin immunity prote 24.3 1.8E+02 0.0062 27.2 7.5 60 229-289 11-87 (336)
251 3hjh_A Transcription-repair-co 24.3 3.9E+02 0.013 26.3 10.2 99 219-320 30-146 (483)
252 3p45_A Caspase-6; protease, hu 24.2 1.7E+02 0.0057 24.8 6.4 50 230-280 43-106 (179)
253 1fuk_A Eukaryotic initiation f 24.1 29 0.00099 28.5 1.6 35 36-70 54-88 (165)
254 2rb4_A ATP-dependent RNA helic 24.1 15 0.0005 30.8 -0.3 35 36-70 58-92 (175)
255 3bos_A Putative DNA replicatio 23.7 68 0.0023 27.5 4.2 16 130-145 103-118 (242)
256 1pyo_A Caspase-2; apoptosis, c 23.5 1.3E+02 0.0043 25.2 5.5 49 230-279 32-94 (167)
257 4h1h_A LMO1638 protein; MCCF-l 23.3 2.1E+02 0.0072 26.6 7.7 59 229-288 10-85 (327)
258 2zay_A Response regulator rece 23.2 1.6E+02 0.0053 22.7 6.0 46 131-183 52-99 (147)
259 3u61_B DNA polymerase accessor 23.0 37 0.0013 31.3 2.3 14 131-144 105-118 (324)
260 3od5_A Caspase-6; caspase doma 22.7 1.7E+02 0.006 26.5 6.8 50 230-280 20-83 (278)
261 3ics_A Coenzyme A-disulfide re 22.7 58 0.002 33.1 3.9 38 230-267 540-577 (588)
262 1d2n_A N-ethylmaleimide-sensit 22.6 1.3E+02 0.0045 26.6 6.0 52 131-182 124-181 (272)
263 1sxj_C Activator 1 40 kDa subu 22.5 73 0.0025 29.6 4.3 42 131-178 110-151 (340)
264 1sxj_D Activator 1 41 kDa subu 22.4 85 0.0029 29.0 4.8 15 130-144 132-146 (353)
265 1t3k_A Arath CDC25, dual-speci 22.2 67 0.0023 26.1 3.5 38 230-267 84-131 (152)
266 3snk_A Response regulator CHEY 21.6 1.7E+02 0.0058 22.2 5.8 48 130-184 58-105 (135)
267 1sxj_E Activator 1 40 kDa subu 21.6 61 0.0021 30.2 3.6 15 130-144 133-147 (354)
268 2dko_A Caspase-3; low barrier 21.5 1.5E+02 0.0051 24.1 5.4 74 240-319 39-115 (146)
269 1xx6_A Thymidine kinase; NESG, 21.4 83 0.0028 26.8 4.1 34 131-172 81-114 (191)
270 4g81_D Putative hexonate dehyd 21.4 4.3E+02 0.015 23.4 9.8 60 230-289 32-94 (255)
271 1yt8_A Thiosulfate sulfurtrans 21.4 69 0.0024 32.3 4.1 37 230-266 321-358 (539)
272 1sxj_A Activator 1 95 kDa subu 21.3 1E+02 0.0034 30.8 5.3 44 130-177 147-190 (516)
273 1okg_A Possible 3-mercaptopyru 21.2 64 0.0022 30.9 3.6 38 231-268 246-284 (373)
274 3g85_A Transcriptional regulat 21.2 79 0.0027 28.2 4.1 40 215-257 174-213 (289)
275 1c4o_A DNA nucleotide excision 20.9 2.6E+02 0.0087 28.9 8.4 65 231-295 53-144 (664)
276 1jr3_D DNA polymerase III, del 20.8 72 0.0025 29.7 3.9 41 129-175 74-115 (343)
277 2j6p_A SB(V)-AS(V) reductase; 20.7 1.1E+02 0.0036 24.8 4.5 37 231-267 67-112 (152)
278 1t1v_A SH3BGRL3, SH3 domain-bi 20.7 1.3E+02 0.0045 21.7 4.6 54 233-286 3-65 (93)
279 1m72_A Caspase-1; caspase, cys 20.6 2.8E+02 0.0097 25.0 7.7 40 240-280 54-93 (272)
280 1sxj_B Activator 1 37 kDa subu 20.3 60 0.0021 29.5 3.2 15 131-145 107-121 (323)
No 1
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.1e-55 Score=459.17 Aligned_cols=335 Identities=34% Similarity=0.574 Sum_probs=295.8
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR 115 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~ 115 (451)
++.++.++|+.+..+....+..+..|..+|+|+|||++.... +...+..
T Consensus 89 gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~-~~~~l~~------------------------------ 137 (523)
T 1oyw_A 89 GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDN-FLEHLAH------------------------------ 137 (523)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTT-HHHHHTT------------------------------
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChH-HHHHHhh------------------------------
Confidence 456778889988887777777778889999999999998654 4444322
Q ss_pred cCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeE
Q psy10478 116 LPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNI 195 (451)
Q Consensus 116 ~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~ 195 (451)
.++++|||||||++++||++|++.|..+..++..+|+.|++++|||+++.+..++.+.+++.++.+
T Consensus 138 --------------~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~ 203 (523)
T 1oyw_A 138 --------------WNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI 203 (523)
T ss_dssp --------------SCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEE
T ss_pred --------------CCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeE
Confidence 379999999999999999999999999988888889999999999999999999999999999999
Q ss_pred EecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHH
Q psy10478 196 INTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275 (451)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~ 275 (451)
+..+.+++++.+.+.... .+...+.+++... .++++||||+|++.++.+++.|.+.|+.+..|||+|+.++|..+++
T Consensus 204 ~~~~~~r~~l~~~v~~~~-~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 280 (523)
T 1oyw_A 204 QISSFDRPNIRYMLMEKF-KPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQE 280 (523)
T ss_dssp EECCCCCTTEEEEEEECS-SHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred EeCCCCCCceEEEEEeCC-CHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHH
Confidence 999999999999887654 4566777777665 6789999999999999999999999999999999999999999999
Q ss_pred HhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhhcCCCCChH
Q psy10478 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSE 355 (451)
Q Consensus 276 ~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~~~~~~~~~ 355 (451)
.|.+|+.+|||||+++++|||+|+|++|||+++|.|.++|+||+|||||+|.+|.+++++++.|...++.++... ...+
T Consensus 281 ~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~-~~~~ 359 (523)
T 1oyw_A 281 KFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEK-PQGQ 359 (523)
T ss_dssp HHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTS-CCSH
T ss_pred HHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhcc-CcHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888763 3334
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCCccccccccCCCCcccccccccccccc
Q psy10478 356 IQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLELEQVPRGGRMVVENSEVWMSTE 435 (451)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~Crr~~l~~~f~~~~~~~~~~~~~~~~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
........++.|..||++..|||.++++|||+.... +|++||||.++. + .
T Consensus 360 ~~~~~~~~l~~m~~~~~~~~crr~~l~~~f~e~~~~-------~c~~cd~c~~~~------------------~-----~ 409 (523)
T 1oyw_A 360 LQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQE-------PCGNCDICLDPP------------------K-----Q 409 (523)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTCCCCS-------CCSCBHHHHSCC------------------C-----E
T ss_pred HHHHHHHHHHHHHHHHhccccHhhhhHhhcCCCCCC-------CCCCCCCCCCCc------------------c-----c
Confidence 455667788999999999999999999999988642 455699998764 2 5
Q ss_pred cCccHHHHHhcccc
Q psy10478 436 ARPGREAFEFLPHL 449 (451)
Q Consensus 436 ~~~~~~~~~~~~~~ 449 (451)
.|.+.+|+++|+|+
T Consensus 410 ~d~~~~~~~~l~~~ 423 (523)
T 1oyw_A 410 YDGSTDAQIALSTI 423 (523)
T ss_dssp EECHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH
Confidence 68999999999987
No 2
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.1e-55 Score=463.95 Aligned_cols=341 Identities=33% Similarity=0.548 Sum_probs=292.2
Q ss_pred chhhhhhcCCCChhhhcCcCccc--cCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKC--CDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSE 113 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~--~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 113 (451)
++.+++++|+.+..+....+..+ ..+..+|+|+||+++.....+...+...
T Consensus 108 gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~--------------------------- 160 (591)
T 2v1x_A 108 GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKA--------------------------- 160 (591)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHH---------------------------
T ss_pred CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhh---------------------------
Confidence 45678889999888776666655 5678999999999998653355544432
Q ss_pred cccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCC
Q psy10478 114 LRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193 (451)
Q Consensus 114 l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~ 193 (451)
..+.++++|||||||++++||++|++.|..+..++..+++.|++++|||+++.+..++...+++..+
T Consensus 161 -------------~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~ 227 (591)
T 2v1x_A 161 -------------YEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKC 227 (591)
T ss_dssp -------------HHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSC
T ss_pred -------------hhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCc
Confidence 1125799999999999999999999999888778888899999999999999999999999999999
Q ss_pred eEEecCCCCCceEEEEEecc---hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHH
Q psy10478 194 NIINTGFDRPNLYLAASVKQ---DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQR 270 (451)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~---~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R 270 (451)
..+..+..+|++.+.+.... ......|.+++.... .++++||||+|++.++.+++.|.+.|+.+..|||+|++++|
T Consensus 228 ~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~-~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R 306 (591)
T 2v1x_A 228 FTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDK 306 (591)
T ss_dssp EEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTT-TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred EEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhc-cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHH
Confidence 99999999999999988764 344566666665432 67899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhhcCC
Q psy10478 271 KEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPN 350 (451)
Q Consensus 271 ~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~~~~ 350 (451)
..+++.|.+|+.+|||||+++++|||+|+|++|||+++|.|+++|+||+|||||+|++|.|+++|++.|...+..++...
T Consensus 307 ~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~ 386 (591)
T 2v1x_A 307 TTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVME 386 (591)
T ss_dssp HHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTS
T ss_pred HHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887653
Q ss_pred CCChHHHHHHHHHHHHHHHHhh-ccccHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCCccccccccCCCCcccccccc
Q psy10478 351 LNDSEIQEHSKTMMKRVEKYLE-LRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLELEQVPRGGRMVVENSE 429 (451)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~-~~~Crr~~l~~~f~~~~~~~~~~~~~~~~~Cd~C~~~~~~~~~~~~~~~~~~~~~~~ 429 (451)
......+..|..||. +..|||..+++|||+...+.. |.++||||..+. +.+
T Consensus 387 -------~~~~~~l~~~~~~~~~~~~Crr~~ll~~f~e~~~~~~-----c~~~Cd~C~~~~----------------~~~ 438 (591)
T 2v1x_A 387 -------NVGQQKLYEMVSYCQNISKCRRVLMAQHFDEVWNSEA-----CNKMCDNCCKDS----------------AFE 438 (591)
T ss_dssp -------TTHHHHHHHHHHHHTCSSSCHHHHHHHHHTCCC---C-----CCSCBHHHHCCC----------------CEE
T ss_pred -------hhhHHHHHHHHHHHhcccccHHHHHHHHcCCCCCccc-----cCCCCCCCCCCC----------------ccc
Confidence 123456789999995 899999999999999864433 667899998764 123
Q ss_pred cccccccCccHHHHHhccccc
Q psy10478 430 VWMSTEARPGREAFEFLPHLK 450 (451)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~ 450 (451)
..|.+.+|+++|+||+
T Consensus 439 -----~~d~~~~~~~~l~~v~ 454 (591)
T 2v1x_A 439 -----RKNITEYCRDLIKILK 454 (591)
T ss_dssp -----EEECHHHHHHHHHHHH
T ss_pred -----ccchHHHHHHHHHHHH
Confidence 6799999999999974
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-37 Score=314.76 Aligned_cols=306 Identities=19% Similarity=0.229 Sum_probs=232.3
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc-------CCCeeEEEeCccccccchhhHhhhhhhhhhhcccce
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC-------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAH 95 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~-------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~ 95 (451)
+...++....+++.+..+-++||+|.+....++..+. .+..++||++|.+.+..+ +.+.+..+.... ...
T Consensus 83 Q~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q-~~~~~~~~~~~~--~~~ 159 (434)
T 2db3_A 83 QKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQ-IFNEARKFAFES--YLK 159 (434)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHH-HHHHHHHHTTTS--SCC
T ss_pred HHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHH-HHHHHHHHhccC--CcE
Confidence 4445555566788999999999999876555554432 235689999999988776 555554431100 001
Q ss_pred eccccCCC-Ccc---hhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCC
Q psy10478 96 CVSQWGHD-FRP---SYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 167 (451)
Q Consensus 96 ~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~ 167 (451)
.....|.. ... ....-.+++++||++....+.+ +.+++++|+||||+++++| |++.+..+.......++.
T Consensus 160 ~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~ 237 (434)
T 2db3_A 160 IGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEH 237 (434)
T ss_dssp CCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSC
T ss_pred EEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCc
Confidence 11111111 111 1223357899999998776543 5789999999999999988 999998886655556789
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCC---CCceEEEE-EecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFD---RPNLYLAA-SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~l~~~~-~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
+++++|||+++.+....... +.++..+..+.. ..++...+ ......+...|.+++... ..++||||+|++.
T Consensus 238 q~l~~SAT~~~~~~~~~~~~--l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~ 312 (434)
T 2db3_A 238 QTLMFSATFPEEIQRMAGEF--LKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ---ADGTIVFVETKRG 312 (434)
T ss_dssp EEEEEESCCCHHHHHHHHTT--CSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHC---CTTEEEECSSHHH
T ss_pred eEEEEeccCCHHHHHHHHHh--ccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhC---CCCEEEEEeCcHH
Confidence 99999999998876543333 456665554322 23333222 223356677777777764 3459999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccC
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAG 323 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRag 323 (451)
++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+|
T Consensus 313 a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~g 392 (434)
T 2db3_A 313 ADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTG 392 (434)
T ss_dssp HHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeecc
Q psy10478 324 RDGLSSVCYTFYKTA 338 (451)
Q Consensus 324 R~g~~g~~i~l~~~~ 338 (451)
|.|+.|.+++|++++
T Consensus 393 R~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 393 RVGNNGRATSFFDPE 407 (434)
T ss_dssp CTTCCEEEEEEECTT
T ss_pred cCCCCCEEEEEEecc
Confidence 999999999999854
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.3e-37 Score=326.20 Aligned_cols=310 Identities=18% Similarity=0.249 Sum_probs=226.5
Q ss_pred hcccchhhhhhcCCCChhhhcCcCccccCC------CeeEEEeCccccccchhhHhhhhhhhhh--hcccceeccccC-C
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCCDN------CRQVVYMTPEYVTNNTSFLSRIPRIVLI--AIDEAHCVSQWG-H 102 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~------~~~vl~~tPe~l~~~~~~~~~l~~~~~~--~~de~~~~~~~~-~ 102 (451)
.+++.+..+-+++|+|......+++.+..+ ..++||++|.+.+..+ +...+..+.-. .....++....| .
T Consensus 59 ~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q-~~~~~~~~~~~~~~~~~~~~~~~~gg~ 137 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQ-IEAEVKKIHDMNYGLKKYACVSLVGGT 137 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHH-HHHHHHHHHHHCGGGTTSCEEEECTTS
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHH-HHHHHHHHHhhcccccceEEEEEECCc
Confidence 466778888999999987666665554333 4689999999998766 55555443110 111112222222 2
Q ss_pred CCcchh----hcccccccCCCCchhhhcc-----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhcc-----CCCCC
Q psy10478 103 DFRPSY----RCLSELRLPLPDVPILFLS-----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP-----LPDVP 168 (451)
Q Consensus 103 ~~~~~~----~~~~~l~~~~~~~~~~~l~-----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~-----~~~~~ 168 (451)
.+.... ..-.+++++||++....+. .+..+++|||||||++++|| |++.+..+...... .++.+
T Consensus 138 ~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~ 215 (579)
T 3sqw_A 138 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIK 215 (579)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCE
T ss_pred cHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCce
Confidence 222222 3346799999999876553 25679999999999999999 99999877654432 23788
Q ss_pred EEEEEeeCChHHHHHHHHhcCCCCCeEEec---CCCC----CceEEEEEecc--hh----HHHHHHHHHhhccCCCCcEE
Q psy10478 169 ILAVTATATPVVIDDICTSLMLRDPNIINT---GFDR----PNLYLAASVKQ--DD----IMADLRKLTNFENQFEGSTI 235 (451)
Q Consensus 169 ~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~---~~~~----~~l~~~~~~~~--~~----~~~~L~~~l~~~~~~~~~~i 235 (451)
+++||||+++.+...+... +..+..+.. .... ..+........ .. ....+...+... ..+.++|
T Consensus 216 ~l~~SAT~~~~v~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~i 292 (579)
T 3sqw_A 216 TLLFSATLDDKVQKLANNI--MNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAI 292 (579)
T ss_dssp EEEEESSCCTHHHHHTTTT--CCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEE
T ss_pred EEEEeccCChHHHHHHHHH--cCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhc-CCCCcEE
Confidence 9999999998876643333 334433321 1111 22222222211 11 223333333322 2678999
Q ss_pred EEcCChhHHHHHHHHHHHC---CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCH
Q psy10478 236 IYCPTKVICEKVCDVLSRN---GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDL 312 (451)
Q Consensus 236 VF~~t~~~~~~l~~~L~~~---~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~ 312 (451)
|||+|+..++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.+.
T Consensus 293 VF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~ 372 (579)
T 3sqw_A 293 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSEL 372 (579)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSST
T ss_pred EECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCH
Confidence 9999999999999999987 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhh
Q psy10478 313 SAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIF 347 (451)
Q Consensus 313 ~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~ 347 (451)
..|+||+||+||.|+.|.+++++.+.|...++.+.
T Consensus 373 ~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 373 ANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp THHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred HHhhhhccccccCCCCceEEEEEcccHHHHHHHHH
Confidence 99999999999999999999999999988777664
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.2e-37 Score=321.45 Aligned_cols=310 Identities=18% Similarity=0.243 Sum_probs=225.6
Q ss_pred hcccchhhhhhcCCCChhhhcCcCccccCC------CeeEEEeCccccccchhhHhhhhhhhhh--hcccceeccccC-C
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCCDN------CRQVVYMTPEYVTNNTSFLSRIPRIVLI--AIDEAHCVSQWG-H 102 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~------~~~vl~~tPe~l~~~~~~~~~l~~~~~~--~~de~~~~~~~~-~ 102 (451)
.+++.+..+-+++|+|......+++.+..+ ..++||++|.+.+..+ +...+..+.-. ......+....| .
T Consensus 110 ~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q-~~~~~~~~~~~~~~~~~~~~~~~~g~~ 188 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQ-IEAEVKKIHDMNYGLKKYACVSLVGGT 188 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHH-HHHHHHHHHHHCGGGTTSCEEEECTTS
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHH-HHHHHHHHHhhccccCceeEEEEECCc
Confidence 467788888999999987666665554433 3589999999998766 55544442100 111112222222 2
Q ss_pred CCcch----hhcccccccCCCCchhhhcc-----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhcc-----CCCCC
Q psy10478 103 DFRPS----YRCLSELRLPLPDVPILFLS-----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP-----LPDVP 168 (451)
Q Consensus 103 ~~~~~----~~~~~~l~~~~~~~~~~~l~-----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~-----~~~~~ 168 (451)
..... ...-.+++++||++....+. .+..+++|||||||++++|| |++.+..+...... .++.|
T Consensus 189 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~ 266 (563)
T 3i5x_A 189 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIK 266 (563)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCE
T ss_pred CHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCce
Confidence 22222 23346799999999876543 25679999999999999999 99998877554322 34788
Q ss_pred EEEEEeeCChHHHHHHHHhcCCCCCeEEec---CCCC----CceEEEEEec--chh----HHHHHHHHHhhccCCCCcEE
Q psy10478 169 ILAVTATATPVVIDDICTSLMLRDPNIINT---GFDR----PNLYLAASVK--QDD----IMADLRKLTNFENQFEGSTI 235 (451)
Q Consensus 169 ~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~---~~~~----~~l~~~~~~~--~~~----~~~~L~~~l~~~~~~~~~~i 235 (451)
+++||||+++.+...+... +..+..+.. .... ..+....... ... ....+...+... ..+.++|
T Consensus 267 ~l~~SAT~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~i 343 (563)
T 3i5x_A 267 TLLFSATLDDKVQKLANNI--MNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAI 343 (563)
T ss_dssp EEEEESSCCTHHHHHTTTT--CCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEE
T ss_pred EEEEEccCCHHHHHHHHHh--cCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhc-CCCCcEE
Confidence 9999999998876543333 334433321 1111 1222222221 112 222333333322 3678999
Q ss_pred EEcCChhHHHHHHHHHHHC---CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCH
Q psy10478 236 IYCPTKVICEKVCDVLSRN---GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDL 312 (451)
Q Consensus 236 VF~~t~~~~~~l~~~L~~~---~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~ 312 (451)
|||+|++.++.+++.|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.+.
T Consensus 344 VF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~ 423 (563)
T 3i5x_A 344 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSEL 423 (563)
T ss_dssp EECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSST
T ss_pred EEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCch
Confidence 9999999999999999987 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCcEEEEEeecccHHHHhhhh
Q psy10478 313 SAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIF 347 (451)
Q Consensus 313 ~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~~ 347 (451)
.+|+||+|||||.|+.|.+++++.+.|...++.+.
T Consensus 424 ~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 424 ANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp THHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHH
T ss_pred hhhhhhcCccccCCCCceEEEEEchhHHHHHHHHH
Confidence 99999999999999999999999999988877664
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=301.24 Aligned_cols=316 Identities=18% Similarity=0.219 Sum_probs=231.2
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--------------------CCeeEEEeCccccccchhhHhh
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--------------------NCRQVVYMTPEYVTNNTSFLSR 82 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--------------------~~~~vl~~tPe~l~~~~~~~~~ 82 (451)
+...++....+++.+..+-+++|+|......+++.+.. ...++||++|.+.+..+ +.+.
T Consensus 42 Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~ 120 (417)
T 2i4i_A 42 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQ-IYEE 120 (417)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHH-HHHH
T ss_pred HHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHH-HHHH
Confidence 34444455557788889999999998765544443321 12579999999988776 5555
Q ss_pred hhhhhhhhcccceeccccCC-CCcc---hhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHH
Q psy10478 83 IPRIVLIAIDEAHCVSQWGH-DFRP---SYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSY 154 (451)
Q Consensus 83 l~~~~~~~~de~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~ 154 (451)
+..+.... ........|. .... ....-.+++++||+.....+.. +.++++|||||||++.+++ |++.+
T Consensus 121 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~--~~~~~ 196 (417)
T 2i4i_A 121 ARKFSYRS--RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMG--FEPQI 196 (417)
T ss_dssp HHHHHTTS--SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTT--CHHHH
T ss_pred HHHHhCcC--CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccC--cHHHH
Confidence 54431100 0011111111 1111 1122357888999888765533 5678999999999999988 89998
Q ss_pred HHHHHhhccCC--CCCEEEEEeeCChHHHHHHHHhcCCCCCeEEecC---CCCCceEEEEEe-cchhHHHHHHHHHhhcc
Q psy10478 155 RCLSELRLPLP--DVPILAVTATATPVVIDDICTSLMLRDPNIINTG---FDRPNLYLAASV-KQDDIMADLRKLTNFEN 228 (451)
Q Consensus 155 ~~l~~l~~~~~--~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~---~~~~~l~~~~~~-~~~~~~~~L~~~l~~~~ 228 (451)
..+.......+ ..+++++|||+++.........+ .++..+... ...+++...+.. ....+...+.+++....
T Consensus 197 ~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~ 274 (417)
T 2i4i_A 197 RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL--DEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATG 274 (417)
T ss_dssp HHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC--SSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCC
T ss_pred HHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcC
Confidence 88755333332 57899999999987765444443 355444332 233444443333 33556677777776642
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCC
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA 308 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~ 308 (451)
.++++||||++++.++.+++.|.+.|+.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 275 -~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~ 353 (417)
T 2i4i_A 275 -KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL 353 (417)
T ss_dssp -TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSC
T ss_pred -CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhh
Q psy10478 309 PKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 309 p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
|.+..+|+||+||+||.|+.|.+++|+++.|...++.+
T Consensus 354 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l 391 (417)
T 2i4i_A 354 PSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 391 (417)
T ss_dssp CSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHH
T ss_pred CCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHH
Confidence 99999999999999999999999999999887766544
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.5e-35 Score=297.34 Aligned_cols=311 Identities=18% Similarity=0.220 Sum_probs=228.0
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc--CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC--DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~--~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
+...++....+++.++.+-+|+|+|......+++.+. ....++||++|.+.+..+ +.+.+..+.-.. ...+....
T Consensus 64 Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~--~~~~~~~~ 140 (410)
T 2j0s_A 64 QQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQ-IQKGLLALGDYM--NVQCHACI 140 (410)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHH-HHHHHHHHTTTT--TCCEEEEC
T ss_pred HHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHH-HHHHHHHHhccC--CeEEEEEE
Confidence 3344444445677888999999999776555554443 245789999999988766 555554431100 00111111
Q ss_pred CCC-Ccch---hhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEE
Q psy10478 101 GHD-FRPS---YRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAV 172 (451)
Q Consensus 101 ~~~-~~~~---~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~l 172 (451)
|.. .... ...-..++++||+.....+.. +.++++||+||||++.+++ |...+..+. ....++.+++++
T Consensus 141 g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~i~--~~~~~~~~~i~~ 216 (410)
T 2j0s_A 141 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG--FKEQIYDVY--RYLPPATQVVLI 216 (410)
T ss_dssp TTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT--THHHHHHHH--TTSCTTCEEEEE
T ss_pred CCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh--hHHHHHHHH--HhCccCceEEEE
Confidence 211 1111 122357888899887765543 4679999999999999887 777776653 233457899999
Q ss_pred EeeCChHHHHHHHHhcCCCCCeEEecCC---CCCceEEE--EEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHH
Q psy10478 173 TATATPVVIDDICTSLMLRDPNIINTGF---DRPNLYLA--ASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKV 247 (451)
Q Consensus 173 SAT~~~~~~~~i~~~l~l~~~~~~~~~~---~~~~l~~~--~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l 247 (451)
|||+++...+.+.. .+.++..+.... ..+++... .......+...+..++... ..+++||||++++.++.+
T Consensus 217 SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l 292 (410)
T 2j0s_A 217 SATLPHEILEMTNK--FMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWL 292 (410)
T ss_dssp ESCCCHHHHTTGGG--TCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHH
T ss_pred EcCCCHHHHHHHHH--HcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHH
Confidence 99999876542222 234555544321 22233222 2222244677787777765 567999999999999999
Q ss_pred HHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCC
Q psy10478 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 248 ~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 327 (451)
++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+
T Consensus 293 ~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~ 372 (410)
T 2j0s_A 293 TEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGR 372 (410)
T ss_dssp HHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGC
T ss_pred HHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeecccHHHHh
Q psy10478 328 SSVCYTFYKTADFTKNN 344 (451)
Q Consensus 328 ~g~~i~l~~~~d~~~~~ 344 (451)
+|.+++|+++.|...++
T Consensus 373 ~g~~~~~~~~~~~~~~~ 389 (410)
T 2j0s_A 373 KGVAINFVKNDDIRILR 389 (410)
T ss_dssp CEEEEEEEEGGGHHHHH
T ss_pred ceEEEEEecHHHHHHHH
Confidence 99999999988876554
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=299.67 Aligned_cols=310 Identities=17% Similarity=0.180 Sum_probs=214.7
Q ss_pred HHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccC-
Q psy10478 25 KYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWG- 101 (451)
Q Consensus 25 ~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~- 101 (451)
..++....+++.++.+-+++|+|......+++.+.. ...++||++|.+.+..+ +.+.+..+.-... .......|
T Consensus 69 ~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~~~--~~~~~~~~~ 145 (414)
T 3eiq_A 69 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQ-IQKVVMALGDYMG--ASCHACIGG 145 (414)
T ss_dssp HHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH-HHHHHHHHGGGSC--CCEEECCCC
T ss_pred HHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHH-HHHHHHHHhcccC--ceEEEEECC
Confidence 333333446778889999999998765555554433 45689999999988766 5655554421111 11111111
Q ss_pred CCCcch----hhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEE
Q psy10478 102 HDFRPS----YRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVT 173 (451)
Q Consensus 102 ~~~~~~----~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lS 173 (451)
...... ...-..+++.||+.....+.. +.++++||+||||++.+++ |...+..+ +....++.+++++|
T Consensus 146 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~--~~~~~~~~--~~~~~~~~~~i~~S 221 (414)
T 3eiq_A 146 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG--FKDQIYDI--FQKLNSNTQVVLLS 221 (414)
T ss_dssp TTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT--THHHHHHH--HTTSCTTCEEEEEC
T ss_pred cchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccC--cHHHHHHH--HHhCCCCCeEEEEE
Confidence 111111 123457888999887665533 4678999999999999887 77776655 33334688999999
Q ss_pred eeCChHHHHHHHHhcCCCCCeEEecCCC---CCce--EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHH
Q psy10478 174 ATATPVVIDDICTSLMLRDPNIINTGFD---RPNL--YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVC 248 (451)
Q Consensus 174 AT~~~~~~~~i~~~l~l~~~~~~~~~~~---~~~l--~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~ 248 (451)
||+++.....+... +.++..+..... .+.+ .+........+...+..++... .++++||||++++.++.++
T Consensus 222 AT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~ 297 (414)
T 3eiq_A 222 ATMPSDVLEVTKKF--MRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLT 297 (414)
T ss_dssp SCCCHHHHHHHTTT--CSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHH
T ss_pred EecCHHHHHHHHHH--cCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHH
Confidence 99998876643332 345554443221 1222 2222222345777888887765 6789999999999999999
Q ss_pred HHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCC
Q psy10478 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLS 328 (451)
Q Consensus 249 ~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~ 328 (451)
+.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|++
T Consensus 298 ~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 377 (414)
T 3eiq_A 298 EKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 377 (414)
T ss_dssp HHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC------
T ss_pred HHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecccHHHHhh
Q psy10478 329 SVCYTFYKTADFTKNNM 345 (451)
Q Consensus 329 g~~i~l~~~~d~~~~~~ 345 (451)
|.+++++++.|...++.
T Consensus 378 g~~~~~~~~~~~~~~~~ 394 (414)
T 3eiq_A 378 GVAINMVTEEDKRTLRD 394 (414)
T ss_dssp -CEEEEECSTHHHHHHH
T ss_pred ceEEEEEcHHHHHHHHH
Confidence 99999999887765543
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.6e-35 Score=293.70 Aligned_cols=311 Identities=19% Similarity=0.198 Sum_probs=226.1
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccC
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWG 101 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~ 101 (451)
...++....+++.++.+-+|+|+|......++..+.. ++.++||++|.+.+..+ +.+.+..+.-.. ........|
T Consensus 49 ~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~~--~~~~~~~~g 125 (400)
T 1s2m_A 49 EEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQ-TSQVVRTLGKHC--GISCMVTTG 125 (400)
T ss_dssp HHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH-HHHHHHHHTTTT--TCCEEEECS
T ss_pred HHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHH-HHHHHHHHhccc--CceEEEEeC
Confidence 3333333345678888999999998765555554433 45689999999988766 555554431100 001111111
Q ss_pred CC-Ccch---hhcccccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEE
Q psy10478 102 HD-FRPS---YRCLSELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVT 173 (451)
Q Consensus 102 ~~-~~~~---~~~~~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lS 173 (451)
.. .... ...-.++++.||+.....+. .+.++++||+||||++.+.+ |+..+..+.. ...+..+++++|
T Consensus 126 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~i~~--~~~~~~~~i~lS 201 (400)
T 1s2m_A 126 GTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD--FKTIIEQILS--FLPPTHQSLLFS 201 (400)
T ss_dssp SSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH--HHHHHHHHHT--TSCSSCEEEEEE
T ss_pred CcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc--hHHHHHHHHH--hCCcCceEEEEE
Confidence 11 1111 12235678888887755443 25679999999999987644 6666655532 223478899999
Q ss_pred eeCChHHHHHHHHhcCCCCCeEEecC--CCCCceEEE-EEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHH
Q psy10478 174 ATATPVVIDDICTSLMLRDPNIINTG--FDRPNLYLA-ASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDV 250 (451)
Q Consensus 174 AT~~~~~~~~i~~~l~l~~~~~~~~~--~~~~~l~~~-~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~ 250 (451)
||+++...+.+...+. .+..+... ...+++... .......+...+..++... .++++||||++++.++.+++.
T Consensus 202 AT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~ 277 (400)
T 1s2m_A 202 ATFPLTVKEFMVKHLH--KPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKK 277 (400)
T ss_dssp SCCCHHHHHHHHHHCS--SCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHcC--CCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHH
Confidence 9999988776666553 44433222 223333322 2223355667777777665 678999999999999999999
Q ss_pred HHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcE
Q psy10478 251 LSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSV 330 (451)
Q Consensus 251 L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 330 (451)
|.+.|+.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|++|.
T Consensus 278 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~ 357 (400)
T 1s2m_A 278 ITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL 357 (400)
T ss_dssp HHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE
T ss_pred HHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccHHHHhh
Q psy10478 331 CYTFYKTADFTKNNM 345 (451)
Q Consensus 331 ~i~l~~~~d~~~~~~ 345 (451)
|++++++.|...++.
T Consensus 358 ~~~l~~~~~~~~~~~ 372 (400)
T 1s2m_A 358 AINLINWNDRFNLYK 372 (400)
T ss_dssp EEEEECGGGHHHHHH
T ss_pred EEEEeccchHHHHHH
Confidence 999999988765543
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.4e-34 Score=291.49 Aligned_cols=296 Identities=19% Similarity=0.229 Sum_probs=220.6
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcccceec-cccCCCCcchhhc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCV-SQWGHDFRPSYRC 110 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~-~~~~~~~~~~~~~ 110 (451)
++.++.+-+|+|+|......+++.+.. ...++||++|.+.+..+ +...+..+.-... ..... ...+..+......
T Consensus 65 ~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 142 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQ-TGKVIEQMGKFYP-ELKLAYAVRGNKLERGQKI 142 (412)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH-HHHHHHHHTTTST-TCCEEEECTTCCCCTTCCC
T ss_pred CeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHH-HHHHHHHHHhhcc-cceEEEeecCcchhhhhcC
Confidence 778888999999998765555544443 33489999999988766 5554544311111 11111 1222223333344
Q ss_pred ccccccCCCCchhhhccc-----cCcccEEEEcccccccc-CCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 111 LSELRLPLPDVPILFLSR-----IPRIVLIAIDEAHCVSQ-WGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 111 ~~~l~~~~~~~~~~~l~~-----l~~l~~vViDEah~~~~-~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
..+++++||+.....+.. +.++++||+||||++.+ ++ |...+..+... ..++.+++++|||+++......
T Consensus 143 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~--~~~~~~~~~~~--~~~~~~~i~~SAT~~~~~~~~~ 218 (412)
T 3fht_A 143 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG--HQDQSIRIQRM--LPRNCQMLLFSATFEDSVWKFA 218 (412)
T ss_dssp CCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTT--THHHHHHHHHT--SCTTCEEEEEESCCCHHHHHHH
T ss_pred CCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCC--cHHHHHHHHhh--CCCCceEEEEEeecCHHHHHHH
Confidence 467888999888765532 36799999999999986 44 66666655333 3457899999999999876654
Q ss_pred HHhcCCCCCeEEecCCC---CCceEEEEE--ecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCee
Q psy10478 185 CTSLMLRDPNIINTGFD---RPNLYLAAS--VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNR 259 (451)
Q Consensus 185 ~~~l~l~~~~~~~~~~~---~~~l~~~~~--~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~ 259 (451)
...+ .++..+..... .+.+..... .....+...+..++... .++++||||++++.++.+++.|.+.++.+.
T Consensus 219 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~ 294 (412)
T 3fht_A 219 QKVV--PDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVA 294 (412)
T ss_dssp HHHS--SSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCE
T ss_pred HHhc--CCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEE
Confidence 4443 45555543321 223322222 22255677777777765 678999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCC------CCHHHHHHHhcccCCCCCCcEEEE
Q psy10478 260 PYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP------KDLSAYYQEIGRAGRDGLSSVCYT 333 (451)
Q Consensus 260 ~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i~ 333 (451)
.+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++
T Consensus 295 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~ 374 (412)
T 3fht_A 295 LLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 374 (412)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred EecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999 578999999999999999999999
Q ss_pred Eeeccc
Q psy10478 334 FYKTAD 339 (451)
Q Consensus 334 l~~~~d 339 (451)
++++.+
T Consensus 375 ~~~~~~ 380 (412)
T 3fht_A 375 MVDSKH 380 (412)
T ss_dssp EECSHH
T ss_pred EEcChh
Confidence 998764
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-34 Score=286.87 Aligned_cols=301 Identities=20% Similarity=0.266 Sum_probs=225.0
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccC-CCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCC-Ccch--hh
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCD-NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHD-FRPS--YR 109 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~-~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~-~~~~--~~ 109 (451)
.+.+..+.+++|+|......+.+.+.. +..+++|++|.+.+..+ +.+.+..+.-. .........|.. .... ..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~ 121 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQ-VADEIESLKGN--KNLKIAKIYGGKAIYPQIKAL 121 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHH-HHHHHHHHHCS--SCCCEEEECTTSCHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHH-HHHHHHHHhCC--CCceEEEEECCcchHHHHhhc
Confidence 577778899999998765555444433 45789999999988766 55555443100 000111111111 1111 11
Q ss_pred cccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHH
Q psy10478 110 CLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185 (451)
Q Consensus 110 ~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~ 185 (451)
.-..+++.||+.....+.. +.+++++|+||||.+.+++ |...+..+.. ...++.+++++|||+++.....+.
T Consensus 122 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~--~~~~~~~~~~--~~~~~~~~i~~SAT~~~~~~~~~~ 197 (367)
T 1hv8_A 122 KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG--FIKDVEKILN--ACNKDKRILLFSATMPREILNLAK 197 (367)
T ss_dssp HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT--THHHHHHHHH--TSCSSCEEEEECSSCCHHHHHHHH
T ss_pred CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc--hHHHHHHHHH--hCCCCceEEEEeeccCHHHHHHHH
Confidence 1356778888877655432 5679999999999999887 7777666533 234578999999999998776655
Q ss_pred HhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCC
Q psy10478 186 TSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHI 265 (451)
Q Consensus 186 ~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l 265 (451)
..++ ++..+...................+...+..++.. .+.++||||++++.++.+++.|.+.++.+..+||++
T Consensus 198 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 272 (367)
T 1hv8_A 198 KYMG--DYSFIKAKINANIEQSYVEVNENERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDL 272 (367)
T ss_dssp HHCC--SEEEEECCSSSSSEEEEEECCGGGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred HHcC--CCeEEEecCCCCceEEEEEeChHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCC
Confidence 5543 44444443333222333333445677777777763 778999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhh
Q psy10478 266 SLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345 (451)
Q Consensus 266 ~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~ 345 (451)
+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|.||+||+||.|++|.+++++++.|...+..
T Consensus 273 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 352 (367)
T 1hv8_A 273 SQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRY 352 (367)
T ss_dssp CHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876654
Q ss_pred h
Q psy10478 346 I 346 (451)
Q Consensus 346 ~ 346 (451)
+
T Consensus 353 i 353 (367)
T 1hv8_A 353 I 353 (367)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-34 Score=288.83 Aligned_cols=309 Identities=15% Similarity=0.164 Sum_probs=224.9
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
+...++....+.+.++.+-+++|+|......+...+.. +..++||++|.+.+..+ +...+..+.-.. .........
T Consensus 35 Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~~-~~~~~~~~~ 112 (391)
T 1xti_A 35 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQ-ISKEYERFSKYM-PNVKVAVFF 112 (391)
T ss_dssp HHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHH-HHHHHHHHTTTC-TTCCEEEEC
T ss_pred HHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHH-HHHHHHHHHhhC-CCeEEEEEe
Confidence 33444444446778889999999998765555544432 45689999999888766 555554431100 001111111
Q ss_pred CC-CCcch----hhcccccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEE
Q psy10478 101 GH-DFRPS----YRCLSELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILA 171 (451)
Q Consensus 101 ~~-~~~~~----~~~~~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~ 171 (451)
|. ..... .....++++.||+.....+. .+.++++||+||||++.+| ..|+..+..+.. ...++.++++
T Consensus 113 g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~-~~~~~~~~~~~~--~~~~~~~~i~ 189 (391)
T 1xti_A 113 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ-LDMRRDVQEIFR--MTPHEKQVMM 189 (391)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS-HHHHHHHHHHHH--TSCSSSEEEE
T ss_pred CCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc-cchHHHHHHHHh--hCCCCceEEE
Confidence 11 11111 11225788888888765443 2568999999999999875 226666666533 2335788999
Q ss_pred EEeeCChHHHHHHHHhcCCCCCeEEecCCC----CCceE-EEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHH
Q psy10478 172 VTATATPVVIDDICTSLMLRDPNIINTGFD----RPNLY-LAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEK 246 (451)
Q Consensus 172 lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~----~~~l~-~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~ 246 (451)
+|||+++.....+...+ ..+..+..... ..++. +........+...+..++... .++++||||++++.++.
T Consensus 190 ~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~ 265 (391)
T 1xti_A 190 FSATLSKEIRPVCRKFM--QDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIA 265 (391)
T ss_dssp EESSCCSTHHHHHHHHC--SSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHH
T ss_pred EEeeCCHHHHHHHHHHc--CCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHH
Confidence 99999988766555544 34544433221 12232 223333456677777877765 77899999999999999
Q ss_pred HHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCC
Q psy10478 247 VCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326 (451)
Q Consensus 247 l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g 326 (451)
+++.|.+.|+.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|.||+||+||.|
T Consensus 266 l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 345 (391)
T 1xti_A 266 LAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 345 (391)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSC
T ss_pred HHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecccH
Q psy10478 327 LSSVCYTFYKTADF 340 (451)
Q Consensus 327 ~~g~~i~l~~~~d~ 340 (451)
++|.+++++++.+.
T Consensus 346 ~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 346 TKGLAITFVSDEND 359 (391)
T ss_dssp CCCEEEEEECSHHH
T ss_pred CceEEEEEEcccch
Confidence 99999999987643
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.6e-34 Score=287.52 Aligned_cols=297 Identities=19% Similarity=0.244 Sum_probs=220.1
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCL 111 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~ 111 (451)
++.++.+-+|+|+|......+.+.+.. ...++||++|.+.+..+ +.+.+..+.-.. ........+..+......-
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 121 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQ-TLEVVQEMGKFT--KITSQLIVPDSFEKNKQIN 121 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHH-HHHHHHHHTTTS--CCCEEEESTTSSCTTSCBC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHH-HHHHHHHHhccc--CeeEEEEecCchhhhccCC
Confidence 778888999999998755555544432 45689999999988766 555555431110 0111122222333333334
Q ss_pred cccccCCCCchhhhcc----ccCcccEEEEcccccccc-CCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHH
Q psy10478 112 SELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQ-WGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICT 186 (451)
Q Consensus 112 ~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~-~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~ 186 (451)
..+++.||+.....+. .+.++++||+||||++.+ ++ |...+..+... ..++.+++++|||+++........
T Consensus 122 ~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~--~~~~~~~~~~~--~~~~~~~i~~SAT~~~~~~~~~~~ 197 (395)
T 3pey_A 122 AQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQG--LGDQCIRVKRF--LPKDTQLVLFSATFADAVRQYAKK 197 (395)
T ss_dssp CSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTT--HHHHHHHHHHT--SCTTCEEEEEESCCCHHHHHHHHH
T ss_pred CCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccc--cHHHHHHHHHh--CCCCcEEEEEEecCCHHHHHHHHH
Confidence 6788888888776543 256899999999999987 44 77776665433 235789999999999877664444
Q ss_pred hcCCCCCeEEecC---CCCCceEEEEEe--cchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeee
Q psy10478 187 SLMLRDPNIINTG---FDRPNLYLAASV--KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPY 261 (451)
Q Consensus 187 ~l~l~~~~~~~~~---~~~~~l~~~~~~--~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~ 261 (451)
.+ ..+..+... ...+.+...... ....+...+..++... .++++||||++++.++.+++.|++.++.+..+
T Consensus 198 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 273 (395)
T 3pey_A 198 IV--PNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSIL 273 (395)
T ss_dssp HS--CSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred hC--CCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEe
Confidence 43 344433322 222333333222 2245566666666654 67899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC------CHHHHHHHhcccCCCCCCcEEEEEe
Q psy10478 262 HAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK------DLSAYYQEIGRAGRDGLSSVCYTFY 335 (451)
Q Consensus 262 h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~------s~~~y~Qr~GRagR~g~~g~~i~l~ 335 (451)
||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++|+|. +..+|+||+||+||.|+.|.+++++
T Consensus 274 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 353 (395)
T 3pey_A 274 HGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353 (395)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ecccHH
Q psy10478 336 KTADFT 341 (451)
Q Consensus 336 ~~~d~~ 341 (451)
.+.+..
T Consensus 354 ~~~~~~ 359 (395)
T 3pey_A 354 HDKNSF 359 (395)
T ss_dssp CSHHHH
T ss_pred echHHH
Confidence 876543
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.7e-36 Score=308.49 Aligned_cols=297 Identities=20% Similarity=0.251 Sum_probs=103.6
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCCC--eeEEEeCccccccchhhHhhhhhhhhhhcccceec-cccCCCCcchhh
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNC--RQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCV-SQWGHDFRPSYR 109 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~--~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~-~~~~~~~~~~~~ 109 (451)
+++.+..+-+|||+|......+++.+..+. .++||++|.+.+..+ +...+..+..... ..... ..++..+.....
T Consensus 131 ~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 208 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQ-TGKVIEQMGKFYP-ELKLAYAVRGNKLERGQK 208 (479)
T ss_dssp CCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHH-HHHHHHHHHTTST-TCCEEEESTTCCCCTTCC
T ss_pred CCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHH-HHHHHHHHHhhCC-CceEEEEeCCcccccccc
Confidence 377888999999999886665655554433 489999999999876 5444443311111 11111 223333443344
Q ss_pred cccccccCCCCchhhhccc-----cCcccEEEEcccccccc-CCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHH
Q psy10478 110 CLSELRLPLPDVPILFLSR-----IPRIVLIAIDEAHCVSQ-WGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDD 183 (451)
Q Consensus 110 ~~~~l~~~~~~~~~~~l~~-----l~~l~~vViDEah~~~~-~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~ 183 (451)
.-..++++||++....+.. +.++++|||||||++++ ++ |...+..+. ....++.+++++|||++..+...
T Consensus 209 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~--~~~~~~~i~--~~~~~~~~~i~~SAT~~~~~~~~ 284 (479)
T 3fmp_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG--HQDQSIRIQ--RMLPRNCQMLLFSATFEDSVWKF 284 (479)
T ss_dssp CCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTT--HHHHHHHHH--TTSCTTSEEEEEESCCCHHHHHH
T ss_pred CCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCC--cHHHHHHHH--hhCCccceEEEEeCCCCHHHHHH
Confidence 4567899999998766532 36899999999999986 44 666665553 33345789999999999987664
Q ss_pred HHHhcCCCCCeEEecCCCCCc---e--EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCe
Q psy10478 184 ICTSLMLRDPNIINTGFDRPN---L--YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQN 258 (451)
Q Consensus 184 i~~~l~l~~~~~~~~~~~~~~---l--~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v 258 (451)
.... +.++..+........ + .+........+...+..++... ..+++||||++++.++.+++.|...++.+
T Consensus 285 ~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v 360 (479)
T 3fmp_B 285 AQKV--VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQV 360 (479)
T ss_dssp HHHH--SSSEEEEEEC----------------------------------------------------------------
T ss_pred HHHH--cCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccE
Confidence 4433 345555544322211 1 1111111234455555555544 56799999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCC------CCHHHHHHHhcccCCCCCCcEEE
Q psy10478 259 RPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP------KDLSAYYQEIGRAGRDGLSSVCY 332 (451)
Q Consensus 259 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i 332 (451)
..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++|+| .+..+|+||+|||||.|+.|.++
T Consensus 361 ~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 361 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 440 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE
Confidence 999999999999999999999999999999999999999999999999999 46789999999999999999999
Q ss_pred EEeeccc
Q psy10478 333 TFYKTAD 339 (451)
Q Consensus 333 ~l~~~~d 339 (451)
+|+++.+
T Consensus 441 ~~~~~~~ 447 (479)
T 3fmp_B 441 NMVDSKH 447 (479)
T ss_dssp -------
T ss_pred EEEcCcc
Confidence 9998765
No 15
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=313.80 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=111.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC------CCCeeeecCC--------CCHHHHHHHHHHhhcCCceEEEEccccccccc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN------GIQNRPYHAH--------ISLKQRKEIHGLFVKDLIKVVVATCAFGMGID 296 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~------~~~v~~~h~~--------l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD 296 (451)
++++||||++++.++.+++.|.+. |+.+..+||+ |+..+|.++++.|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 789999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHh--------hh----hc--CCCCChHHHH-HHH
Q psy10478 297 KPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNN--------MI----FQ--PNLNDSEIQE-HSK 361 (451)
Q Consensus 297 ~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~--------~~----~~--~~~~~~~~~~-~~~ 361 (451)
+|++++||+||+|.|+..|+||+|||||.| +.+++++...+..... .+ +. ...+..++.. ...
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 557 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMKPEEYAHKILE 557 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999999999999999999999988776 4445554444321110 01 11 1123333332 333
Q ss_pred HHHHHHHHHhhccccHHHHHHhhcCCCC
Q psy10478 362 TMMKRVEKYLELRTCRRKYLLNHFKGSS 389 (451)
Q Consensus 362 ~~~~~~~~~~~~~~Crr~~l~~~f~~~~ 389 (451)
..+..+..+.....|++...+.||++..
T Consensus 558 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (699)
T 4gl2_A 558 LQMQSIMEKKMKTKRNIAKHYKNNPSLI 585 (699)
T ss_dssp HHHHHHHHCCSCCC----------CCSE
T ss_pred HHHHHHHHHHHHHhhhHHhhhhcCccee
Confidence 3467788888889999999999999875
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.2e-33 Score=273.82 Aligned_cols=300 Identities=17% Similarity=0.188 Sum_probs=214.2
Q ss_pred HHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCC-C
Q psy10478 26 YLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHD-F 104 (451)
Q Consensus 26 ~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~-~ 104 (451)
.++....+++.++.+.+++|+|......+.+. ..++||++|.+.+..+ +.+.+..+.-.. ........|.. .
T Consensus 24 ~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q-~~~~~~~~~~~~--~~~~~~~~~~~~~ 96 (337)
T 2z0m_A 24 TIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQ-VASHIRDIGRYM--DTKVAEVYGGMPY 96 (337)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHH-HHHHHHHHTTTS--CCCEEEECTTSCH
T ss_pred HHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHH-HHHHHHHHhhhc--CCcEEEEECCcch
Confidence 33333345678889999999998755444432 4689999999988766 665555431100 00111111111 1
Q ss_pred cch--hhcccccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 105 RPS--YRCLSELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 105 ~~~--~~~~~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
... ...-.++.+.||+.....+. .+.++++||+||||++.+|+ |...+..+.. ...+..+++++|||+++
T Consensus 97 ~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~~~~--~~~~~~~~~~~SAT~~~ 172 (337)
T 2z0m_A 97 KAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG--FIDDIKIILA--QTSNRKITGLFSATIPE 172 (337)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT--CHHHHHHHHH--HCTTCSEEEEEESCCCH
T ss_pred HHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc--cHHHHHHHHh--hCCcccEEEEEeCcCCH
Confidence 111 01126788888887765443 24678999999999999988 7776665532 22346677899999999
Q ss_pred HHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCe
Q psy10478 179 VVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQN 258 (451)
Q Consensus 179 ~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v 258 (451)
...+.+...+ .++..+......+++.............. ...+... .++++||||++++.++.+++.|. .+
T Consensus 173 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~----~~ 243 (337)
T 2z0m_A 173 EIRKVVKDFI--TNYEEIEACIGLANVEHKFVHVKDDWRSK-VQALREN--KDKGVIVFVRTRNRVAKLVRLFD----NA 243 (337)
T ss_dssp HHHHHHHHHS--CSCEEEECSGGGGGEEEEEEECSSSSHHH-HHHHHTC--CCSSEEEECSCHHHHHHHHTTCT----TE
T ss_pred HHHHHHHHhc--CCceeeecccccCCceEEEEEeChHHHHH-HHHHHhC--CCCcEEEEEcCHHHHHHHHHHhh----hh
Confidence 8877666554 34555554444455544443333222222 2333333 78899999999999999998886 58
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecc
Q psy10478 259 RPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTA 338 (451)
Q Consensus 259 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 338 (451)
..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|..+|+||+||+||.|++|.+++++. .
T Consensus 244 ~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~ 322 (337)
T 2z0m_A 244 IELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-N 322 (337)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-S
T ss_pred hhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-C
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred cHHHHhhh
Q psy10478 339 DFTKNNMI 346 (451)
Q Consensus 339 d~~~~~~~ 346 (451)
+....+.+
T Consensus 323 ~~~~~~~i 330 (337)
T 2z0m_A 323 EYWLEKEV 330 (337)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 66555544
No 17
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.98 E-value=9.8e-33 Score=304.77 Aligned_cols=356 Identities=16% Similarity=0.162 Sum_probs=225.2
Q ss_pred hhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhc
Q psy10478 31 TCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRC 110 (451)
Q Consensus 31 ~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~ 110 (451)
..+++.++.+-++||+|......+..... .+.+++|++|.+.+..+ ....+.... .........|.. . ...
T Consensus 52 l~g~~vlv~apTGsGKTlv~~~~i~~~~~-~g~~vlvl~PtraLa~Q-~~~~l~~~~----~~~~v~~l~G~~-~--~~~ 122 (997)
T 4a4z_A 52 EQGDSVFVAAHTSAGKTVVAEYAIAMAHR-NMTKTIYTSPIKALSNQ-KFRDFKETF----DDVNIGLITGDV-Q--INP 122 (997)
T ss_dssp HTTCEEEEECCTTSCSHHHHHHHHHHHHH-TTCEEEEEESCGGGHHH-HHHHHHTTC------CCEEEECSSC-E--ECT
T ss_pred HcCCCEEEEECCCCcHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHH-HHHHHHHHc----CCCeEEEEeCCC-c--cCC
Confidence 34567888999999999754333333333 34689999999999877 555444320 000111111111 1 112
Q ss_pred ccccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHH
Q psy10478 111 LSELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICT 186 (451)
Q Consensus 111 ~~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~ 186 (451)
-..+++.||+.+...+. .+.++++|||||||++.+|+ |...+..+.. ...++.+++++|||+++.. ++..
T Consensus 123 ~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~--~g~~~e~ii~--~l~~~v~iIlLSAT~~n~~--ef~~ 196 (997)
T 4a4z_A 123 DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQD--RGVVWEEVII--MLPQHVKFILLSATVPNTY--EFAN 196 (997)
T ss_dssp TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTC--TTCCHHHHHH--HSCTTCEEEEEECCCTTHH--HHHH
T ss_pred CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccc--hHHHHHHHHH--hcccCCCEEEEcCCCCChH--HHHH
Confidence 25677788887755442 25689999999999999987 4455555532 2345799999999997654 4555
Q ss_pred hcCC---CCCeEEecCCCCCceEEEEEe----------------------------------------------------
Q psy10478 187 SLML---RDPNIINTGFDRPNLYLAASV---------------------------------------------------- 211 (451)
Q Consensus 187 ~l~l---~~~~~~~~~~~~~~l~~~~~~---------------------------------------------------- 211 (451)
+++. .+..++.......++...+..
T Consensus 197 ~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (997)
T 4a4z_A 197 WIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRG 276 (997)
T ss_dssp HHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------
T ss_pred HHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccc
Confidence 5542 222233332222222221110
Q ss_pred ------------------------------------------cchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHH
Q psy10478 212 ------------------------------------------KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCD 249 (451)
Q Consensus 212 ------------------------------------------~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~ 249 (451)
........+...+... ...++||||+|++.|+.++.
T Consensus 277 ~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~ 354 (997)
T 4a4z_A 277 GSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYAD 354 (997)
T ss_dssp ----------------------------------------CCCCTTHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHH
Confidence 0112234455555544 56799999999999999999
Q ss_pred HHHHCCC---------------------------------------CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 250 VLSRNGI---------------------------------------QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 250 ~L~~~~~---------------------------------------~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
.|.+.++ .+..+||+|++.+|..+++.|.+|.++|||||++
T Consensus 355 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~ 434 (997)
T 4a4z_A 355 WLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATET 434 (997)
T ss_dssp TTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchH
Confidence 9977655 5789999999999999999999999999999999
Q ss_pred cccccccCCccEEEEeCCCC---------CHHHHHHHhcccCCCC--CCcEEEEEe--ecccHHHHhhhhcCCCCC--h-
Q psy10478 291 FGMGIDKPDVRCVIHYGAPK---------DLSAYYQEIGRAGRDG--LSSVCYTFY--KTADFTKNNMIFQPNLND--S- 354 (451)
Q Consensus 291 ~~~GiD~p~v~~VI~~~~p~---------s~~~y~Qr~GRagR~g--~~g~~i~l~--~~~d~~~~~~~~~~~~~~--~- 354 (451)
+++|||+|+ ..||+++.|+ |..+|+||+|||||.| ..|.+++++ .+.+...++.++...... .
T Consensus 435 ~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~ 513 (997)
T 4a4z_A 435 FAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQ 513 (997)
T ss_dssp HHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCC
T ss_pred hhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcCCCcccccc
Confidence 999999999 6777766666 9999999999999998 568888887 334555555554332111 0
Q ss_pred -----H----HHHHHHHHHHHHHHHh------hccccHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCCc
Q psy10478 355 -----E----IQEHSKTMMKRVEKYL------ELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNE 410 (451)
Q Consensus 355 -----~----~~~~~~~~~~~~~~~~------~~~~Crr~~l~~~f~~~~~~~~~~~~~~~~~Cd~C~~~~ 410 (451)
. +-+......+.|..+. ....|++...+.+|+....... +..||+|..+.
T Consensus 514 ~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~------~~~c~~c~~~~ 578 (997)
T 4a4z_A 514 FRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIE------YKSCEICDNDI 578 (997)
T ss_dssp CCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred cccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh------hhccccccccH
Confidence 0 0011111233444443 5678999999999987654322 44599996543
No 18
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.98 E-value=4.4e-34 Score=286.18 Aligned_cols=305 Identities=18% Similarity=0.214 Sum_probs=98.8
Q ss_pred hhcccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCC-Ccch
Q psy10478 31 TCRRKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHD-FRPS 107 (451)
Q Consensus 31 ~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~-~~~~ 107 (451)
..+++.++.+-+++|+|......+++.+.. ...++||++|.+.+..+ +.+.+..+.... ........|.. ....
T Consensus 56 ~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~~--~~~~~~~~g~~~~~~~ 132 (394)
T 1fuu_A 56 IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQ-IQKVVMALAFHM--DIKVHACIGGTSFVED 132 (394)
T ss_dssp HHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHH-HHHHHHHHTTTS--CCCEEEECSSCCHHHH
T ss_pred hCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHH-HHHHHHHHhccC--CeeEEEEeCCCchHHH
Confidence 345677888899999997754444444332 34689999999888766 555444331000 00111111111 1111
Q ss_pred h--hcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHH
Q psy10478 108 Y--RCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVI 181 (451)
Q Consensus 108 ~--~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~ 181 (451)
. ..-..+++.||+.....+.. +.++++||+||||++.+++ |+..+..+... ..++.+++++|||+++...
T Consensus 133 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~--~~~~~~~~~~~--~~~~~~~i~~SAT~~~~~~ 208 (394)
T 1fuu_A 133 AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQIYQIFTL--LPPTTQVVLLSATMPNDVL 208 (394)
T ss_dssp HHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHH--SCTTCEEEEECSSCCHHHH
T ss_pred HhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCC--cHHHHHHHHHh--CCCCceEEEEEEecCHHHH
Confidence 1 11356888888887655432 4679999999999999887 78877766433 2357889999999998876
Q ss_pred HHHHHhcCCCCCeEEecCCCC---CceEE--EEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCC
Q psy10478 182 DDICTSLMLRDPNIINTGFDR---PNLYL--AASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGI 256 (451)
Q Consensus 182 ~~i~~~l~l~~~~~~~~~~~~---~~l~~--~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~ 256 (451)
+.+...+ ..+..+...... +++.. ........+...+..++... .++++||||++++.++.+++.|++.++
T Consensus 209 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~ 284 (394)
T 1fuu_A 209 EVTTKFM--RNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKF 284 (394)
T ss_dssp HHHHHHC--CSCEEEEECC-------------------------------------------------------------
T ss_pred HHHHHhc--CCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 6555544 345444332211 11111 11111122445555555544 567999999999999999999999999
Q ss_pred CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 257 QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 257 ~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|++|.++++++
T Consensus 285 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 364 (394)
T 1fuu_A 285 TVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 364 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHhhh
Q psy10478 337 TADFTKNNMI 346 (451)
Q Consensus 337 ~~d~~~~~~~ 346 (451)
+.|...++.+
T Consensus 365 ~~~~~~~~~l 374 (394)
T 1fuu_A 365 NEDVGAMREL 374 (394)
T ss_dssp ----------
T ss_pred hhHHHHHHHH
Confidence 9887766544
No 19
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.98 E-value=6.3e-33 Score=287.60 Aligned_cols=294 Identities=18% Similarity=0.219 Sum_probs=189.5
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCC--CeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDN--CRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCL 111 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~--~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~ 111 (451)
++.++.+.+|+|+|......+...+..+ +.++||++|.+.+..+ +.+.+..+.-.. ........+.........-
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 235 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQ-IMDVVTEMGKYT--EVKTAFGIKDSVPKGAKID 235 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHH-HHHHHHHHSTTS--SCCEEC----------CCC
T ss_pred CCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHH-HHHHHHHhCCcc--CeeEEEEeCCcccccccCC
Confidence 6677788899999987555555554433 4589999999988766 555554431100 0111111122222222234
Q ss_pred cccccCCCCchhhhcc----ccCcccEEEEcccccccc-CCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHH
Q psy10478 112 SELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQ-WGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICT 186 (451)
Q Consensus 112 ~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~-~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~ 186 (451)
..++++||+.....+. .+.++++|||||||++++ ++ |...+..+.... .++.+++++|||+++........
T Consensus 236 ~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~--~~~~~~~i~~~~--~~~~~~i~lSAT~~~~~~~~~~~ 311 (508)
T 3fho_A 236 AQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQG--LGDQSMRIKHLL--PRNTQIVLFSATFSERVEKYAER 311 (508)
T ss_dssp CSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC----CHHHHHHHHHHS--CTTCEEEEEESCCSTHHHHHHHH
T ss_pred CCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCC--cHHHHHHHHHhC--CcCCeEEEEeCCCCHHHHHHHHH
Confidence 6788888888765443 256799999999999987 44 777776664432 34789999999998876553333
Q ss_pred hcCCCCCeEEecCCC---CCce--EEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeee
Q psy10478 187 SLMLRDPNIINTGFD---RPNL--YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPY 261 (451)
Q Consensus 187 ~l~l~~~~~~~~~~~---~~~l--~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~ 261 (451)
.+ .++..+..... .+.+ .+........+...+..++... .++++||||++++.++.+++.|.+.++.+..+
T Consensus 312 ~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~ 387 (508)
T 3fho_A 312 FA--PNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACL 387 (508)
T ss_dssp HS--TTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEE
T ss_pred hc--CCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 32 34444332211 1122 2222223345666677777655 67899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCC------CCHHHHHHHhcccCCCCCCcEEEEEe
Q psy10478 262 HAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP------KDLSAYYQEIGRAGRDGLSSVCYTFY 335 (451)
Q Consensus 262 h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i~l~ 335 (451)
||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.| .+..+|+||+||+||.|++|.+++++
T Consensus 388 hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~ 467 (508)
T 3fho_A 388 TGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 467 (508)
T ss_dssp C-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEE
Confidence 999999999999999999999999999999999999999999999999 78999999999999999999999999
Q ss_pred ecc
Q psy10478 336 KTA 338 (451)
Q Consensus 336 ~~~ 338 (451)
.+.
T Consensus 468 ~~~ 470 (508)
T 3fho_A 468 HDK 470 (508)
T ss_dssp CTT
T ss_pred eCh
Confidence 853
No 20
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=3.7e-32 Score=274.75 Aligned_cols=241 Identities=16% Similarity=0.192 Sum_probs=178.5
Q ss_pred cchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhccccc
Q psy10478 35 KYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSEL 114 (451)
Q Consensus 35 ~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l 114 (451)
.++.+..++|+.+..++...++.+..+..+|+|+||+++.... ..+.
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l---~~~~------------------------------ 136 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR---EKLS------------------------------ 136 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCH---HHHT------------------------------
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHH---HHhc------------------------------
Confidence 3456777888888866666667777788999999999997532 1111
Q ss_pred ccCCCCchhhhccccCcccEEEEccccccccCC---------CCcHHH-HHHHHHhhc------c---CCCCCEEEEEee
Q psy10478 115 RLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWG---------HDFRPS-YRCLSELRL------P---LPDVPILAVTAT 175 (451)
Q Consensus 115 ~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g---------~~fr~~-~~~l~~l~~------~---~~~~~~v~lSAT 175 (451)
+.++++|||||||++++|+ ..|++. +..+..... . .++.+++++|||
T Consensus 137 --------------~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT 202 (414)
T 3oiy_A 137 --------------QKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSAT 202 (414)
T ss_dssp --------------TCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCC
T ss_pred --------------cccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecC
Confidence 1379999999999998766 557777 555543321 1 157899999999
Q ss_pred C-ChHHHHHHHHh-cCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHH
Q psy10478 176 A-TPVVIDDICTS-LMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR 253 (451)
Q Consensus 176 ~-~~~~~~~i~~~-l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~ 253 (451)
+ +......+... +..... ......+++....... .+...+..++.. .++++||||++++.++.+++.|.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~--~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~ 274 (414)
T 3oiy_A 203 AKPRGIRPLLFRDLLNFTVG---RLVSVARNITHVRISS--RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKR 274 (414)
T ss_dssp SSCCSSTTHHHHHHHSCCSS---CCCCCCCSEEEEEESS--CCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHhhccCcC---ccccccccchheeecc--CHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHH
Confidence 4 44433233322 221111 1112223333333222 345566666665 348999999999999999999999
Q ss_pred CCCCee-eecCCCCHHHHHHHHHHhhcCCceEEEE----ccccccccccCC-ccEEEEeCCC--CCHHHHHHHhcccCCC
Q psy10478 254 NGIQNR-PYHAHISLKQRKEIHGLFVKDLIKVVVA----TCAFGMGIDKPD-VRCVIHYGAP--KDLSAYYQEIGRAGRD 325 (451)
Q Consensus 254 ~~~~v~-~~h~~l~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiD~p~-v~~VI~~~~p--~s~~~y~Qr~GRagR~ 325 (451)
.|+.+. .+||. +|. ++.|++|+++|||| |+++++|+|+|+ |++||++|+| .+..+|+||+||+||.
T Consensus 275 ~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 275 FKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp TTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred cCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 999998 99995 444 99999999999999 999999999999 9999999999 9999999999999998
Q ss_pred C----CCcEEEEEee
Q psy10478 326 G----LSSVCYTFYK 336 (451)
Q Consensus 326 g----~~g~~i~l~~ 336 (451)
| +.|.+++++.
T Consensus 349 g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 349 LNGVLVKGVSVIFEE 363 (414)
T ss_dssp ETTEECCEEEEEECC
T ss_pred CCCCCcceEEEEEEc
Confidence 8 5799999983
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1e-31 Score=289.13 Aligned_cols=126 Identities=22% Similarity=0.289 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhc--cCCCCcEEEEcCChhHHHHHHHHHHHCC----CCeeee--------cCCCCHHHHHHHHHHhhc-C
Q psy10478 216 IMADLRKLTNFE--NQFEGSTIIYCPTKVICEKVCDVLSRNG----IQNRPY--------HAHISLKQRKEIHGLFVK-D 280 (451)
Q Consensus 216 ~~~~L~~~l~~~--~~~~~~~iVF~~t~~~~~~l~~~L~~~~----~~v~~~--------h~~l~~~~R~~~~~~f~~-g 280 (451)
+...|..++... ...++++||||+++..++.+++.|.+.+ +.+..+ ||+|+.++|.++++.|++ |
T Consensus 381 k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g 460 (696)
T 2ykg_A 381 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 460 (696)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcC
Confidence 444455555443 1257899999999999999999999987 888888 559999999999999998 9
Q ss_pred CceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHH
Q psy10478 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKN 343 (451)
Q Consensus 281 ~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~ 343 (451)
+.+|||||+++++|||+|++++||+||+|.+..+|+||+|| ||. ++|.++++++..+....
T Consensus 461 ~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 461 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHH
T ss_pred CccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHH
Confidence 99999999999999999999999999999999999999999 998 68999999998777443
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.97 E-value=6e-30 Score=276.10 Aligned_cols=293 Identities=18% Similarity=0.163 Sum_probs=201.9
Q ss_pred hhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCC-Ccchh
Q psy10478 30 RTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHD-FRPSY 108 (451)
Q Consensus 30 ~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~-~~~~~ 108 (451)
...+.+.++++-++||+|......+++.+...+.+++|++|.+.+..+ ....+..+.-.. ...+...|.. .....
T Consensus 43 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q-~~~~~~~~~~~g---~~v~~~~G~~~~~~~~ 118 (715)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNE-KYLTFKDWELIG---FKVAMTSGDYDTDDAW 118 (715)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHH-HHHHHGGGGGGT---CCEEECCSCSSSCCGG
T ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHH-HHHHHHHhhcCC---CEEEEEeCCCCCchhh
Confidence 344778888999999999886555555554334699999999987766 444333221111 1111111211 11111
Q ss_pred hcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 109 RCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 109 ~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
..-.++++.||+.+...+.. +.++++|||||+|++.+++ +.+.+..+.... ++.++++||||+++. +++
T Consensus 119 ~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~--~~~~l~~i~~~~---~~~~ii~lSATl~n~--~~~ 191 (715)
T 2va8_A 119 LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE--RGPVVESVTIRA---KRRNLLALSATISNY--KQI 191 (715)
T ss_dssp GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT--THHHHHHHHHHH---HTSEEEEEESCCTTH--HHH
T ss_pred cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc--cchHHHHHHHhc---ccCcEEEEcCCCCCH--HHH
Confidence 23567888999887665432 5689999999999998755 556665543222 278999999999853 466
Q ss_pred HHhcCCCCCeEEecCCCCCceEE------------EEEec---------chhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 185 CTSLMLRDPNIINTGFDRPNLYL------------AASVK---------QDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 185 ~~~l~l~~~~~~~~~~~~~~l~~------------~~~~~---------~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.++++. ..+........+.. .+... .......+.+.+. .++++||||++++.
T Consensus 192 ~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~s~~~ 264 (715)
T 2va8_A 192 AKWLGA---EPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS----KNGQVLVFRNSRKM 264 (715)
T ss_dssp HHHHTC---EEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT----TTCCEEEECSSHHH
T ss_pred HHHhCC---CccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh----cCCCEEEEECCHHH
Confidence 777752 22222111111110 11111 1233333444332 67999999999999
Q ss_pred HHHHHHHHHHCC------------------------------------CCeeeecCCCCHHHHHHHHHHhhcCCceEEEE
Q psy10478 244 CEKVCDVLSRNG------------------------------------IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVA 287 (451)
Q Consensus 244 ~~~l~~~L~~~~------------------------------------~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVa 287 (451)
++.+++.|.+.. ..+..+||+|+.++|..+++.|.+|.++||||
T Consensus 265 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlva 344 (715)
T 2va8_A 265 AESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVA 344 (715)
T ss_dssp HHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEE
T ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 999999998642 24899999999999999999999999999999
Q ss_pred ccccccccccCCccEEEE----eC-------CCCCHHHHHHHhcccCCCC--CCcEEEEEeecccH
Q psy10478 288 TCAFGMGIDKPDVRCVIH----YG-------APKDLSAYYQEIGRAGRDG--LSSVCYTFYKTADF 340 (451)
Q Consensus 288 T~~~~~GiD~p~v~~VI~----~~-------~p~s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~ 340 (451)
|+++++|||+|++++||+ || .|.|..+|.||+|||||.| .+|.|++++++.+.
T Consensus 345 T~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 345 TPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp CGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred ChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 999999999999999999 88 8999999999999999998 47999999988763
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.97 E-value=9.2e-30 Score=274.69 Aligned_cols=294 Identities=18% Similarity=0.179 Sum_probs=206.6
Q ss_pred hhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCC-CCcchh
Q psy10478 30 RTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGH-DFRPSY 108 (451)
Q Consensus 30 ~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~-~~~~~~ 108 (451)
...+.+.++++-++||+|......+++.+...+.+++|++|.+.+..+ ....+..+.-..+ .....-|. ......
T Consensus 36 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q-~~~~~~~l~~~g~---~v~~~~G~~~~~~~~ 111 (720)
T 2zj8_A 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEE-KFQEFQDWEKIGL---RVAMATGDYDSKDEW 111 (720)
T ss_dssp GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHH-HHHHTGGGGGGTC---CEEEECSCSSCCCGG
T ss_pred hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHH-HHHHHHHHHhcCC---EEEEecCCCCccccc
Confidence 344788888999999999776555555544334699999999998876 5544443211111 11111111 111112
Q ss_pred hcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 109 RCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 109 ~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
..-.++++.||+.+...+.. +.++++|||||||++.+++ +.+.+..+..... ++.++++||||+++. +++
T Consensus 112 ~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~--r~~~~~~ll~~l~--~~~~ii~lSATl~n~--~~~ 185 (720)
T 2zj8_A 112 LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD--RGATLEVILAHML--GKAQIIGLSATIGNP--EEL 185 (720)
T ss_dssp GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT--THHHHHHHHHHHB--TTBEEEEEECCCSCH--HHH
T ss_pred cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCc--ccHHHHHHHHHhh--cCCeEEEEcCCcCCH--HHH
Confidence 33577888999887655432 5679999999999998766 5565555433222 378999999999763 566
Q ss_pred HHhcCCCCCeEEecCCCCC-ceEEEEEe-------c-----chhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHH
Q psy10478 185 CTSLMLRDPNIINTGFDRP-NLYLAASV-------K-----QDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVL 251 (451)
Q Consensus 185 ~~~l~l~~~~~~~~~~~~~-~l~~~~~~-------~-----~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L 251 (451)
.++++. ..+..+ .+| .+...+.. . .......+.+.+. .++++||||+|++.++.++..|
T Consensus 186 ~~~l~~---~~~~~~-~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~sr~~~~~~a~~L 257 (720)
T 2zj8_A 186 AEWLNA---ELIVSD-WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR----KKKGALIFVNMRRKAERVALEL 257 (720)
T ss_dssp HHHTTE---EEEECC-CCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH----TTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHhCC---cccCCC-CCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh----CCCCEEEEecCHHHHHHHHHHH
Confidence 777752 122222 122 11111100 0 1223344444443 6789999999999999999998
Q ss_pred HHC---------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccC
Q psy10478 252 SRN---------------------------------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298 (451)
Q Consensus 252 ~~~---------------------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p 298 (451)
.+. ...+..+||+|+.++|..+++.|++|.++|||||+++++|||+|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip 337 (720)
T 2zj8_A 258 SKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTP 337 (720)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCC
T ss_pred HHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCC
Confidence 753 12489999999999999999999999999999999999999999
Q ss_pred CccEEEE----eC----CCCCHHHHHHHhcccCCCC--CCcEEEEEeecccHH
Q psy10478 299 DVRCVIH----YG----APKDLSAYYQEIGRAGRDG--LSSVCYTFYKTADFT 341 (451)
Q Consensus 299 ~v~~VI~----~~----~p~s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~~ 341 (451)
++++||+ || .|.+..+|.||+|||||.| ..|.|++++++.+..
T Consensus 338 ~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 338 AFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp BSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred ceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9999998 66 5899999999999999998 579999999988754
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=9.2e-30 Score=273.95 Aligned_cols=296 Identities=17% Similarity=0.168 Sum_probs=206.9
Q ss_pred hhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCC-Ccchhh
Q psy10478 31 TCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHD-FRPSYR 109 (451)
Q Consensus 31 ~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~-~~~~~~ 109 (451)
..+.+.++.+-++||+|......+++.+..+ .+++|++|.+.+..+ ..+.+..+.-.. ......-|.. ......
T Consensus 38 ~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~l~i~P~r~La~q-~~~~~~~~~~~g---~~v~~~~G~~~~~~~~~ 112 (702)
T 2p6r_A 38 FSGKNLLLAMPTAAGKTLLAEMAMVREAIKG-GKSLYVVPLRALAGE-KYESFKKWEKIG---LRIGISTGDYESRDEHL 112 (702)
T ss_dssp TTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHH-HHHHHTTTTTTT---CCEEEECSSCBCCSSCS
T ss_pred hCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CcEEEEeCcHHHHHH-HHHHHHHHHhcC---CEEEEEeCCCCcchhhc
Confidence 3467788888999999987655555555444 589999999987766 444433221110 1111111111 001112
Q ss_pred cccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHH-HHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 110 CLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCL-SELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 110 ~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l-~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
.-.++++.||+.+...+.. +.++++|||||||++.+++ +.+.+..+ ..++...++.++++||||+++ .+++
T Consensus 113 ~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~ 188 (702)
T 2p6r_A 113 GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEI 188 (702)
T ss_dssp TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHH
T ss_pred cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHH
Confidence 2467888888877665433 5689999999999998876 44555443 334334568999999999986 3567
Q ss_pred HHhcCCCCCeEEecCCCCCceEEEE--------Eec------chhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHH
Q psy10478 185 CTSLMLRDPNIINTGFDRPNLYLAA--------SVK------QDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDV 250 (451)
Q Consensus 185 ~~~l~l~~~~~~~~~~~~~~l~~~~--------~~~------~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~ 250 (451)
.++++. ..+..+.....+...+ ... .......+.+.+. .++++||||++++.++.++..
T Consensus 189 ~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~s~~~~~~~a~~ 261 (702)
T 2p6r_A 189 AEWLDA---DYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA----ENGGVLVFESTRRGAEKTAVK 261 (702)
T ss_dssp HHHTTC---EEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH----TTCCEEEECSSHHHHHHHHHH
T ss_pred HHHhCC---CcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh----cCCCEEEEcCCHHHHHHHHHH
Confidence 777752 2232222111111111 110 0013444444443 678999999999999999999
Q ss_pred HHHC------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCc
Q psy10478 251 LSRN------------------------------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDV 300 (451)
Q Consensus 251 L~~~------------------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v 300 (451)
|.+. +..+..+||+|+.++|..+++.|++|+++|||||+++++|||+|++
T Consensus 262 L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~ 341 (702)
T 2p6r_A 262 LSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPAR 341 (702)
T ss_dssp HHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBS
T ss_pred HHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCce
Confidence 8753 2358889999999999999999999999999999999999999999
Q ss_pred cEEEE----eC---CCCCHHHHHHHhcccCCCC--CCcEEEEEeecccHHH
Q psy10478 301 RCVIH----YG---APKDLSAYYQEIGRAGRDG--LSSVCYTFYKTADFTK 342 (451)
Q Consensus 301 ~~VI~----~~---~p~s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~~~ 342 (451)
++||+ || .|.|..+|.||+|||||.| .+|.|++++++.+...
T Consensus 342 ~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 342 RVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp EEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred EEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 99999 66 7899999999999999998 5799999999888553
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-30 Score=289.04 Aligned_cols=301 Identities=16% Similarity=0.141 Sum_probs=202.5
Q ss_pred hhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhc
Q psy10478 31 TCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRC 110 (451)
Q Consensus 31 ~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~ 110 (451)
..+.+.++++-++||+|......+...+..| .+++|++|.+.+..+ ....+....- ..+...| +.. ...
T Consensus 197 ~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-~rvlvl~PtraLa~Q-~~~~l~~~~~------~VglltG-d~~--~~~ 265 (1108)
T 3l9o_A 197 DRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQ-KYRELLAEFG------DVGLMTG-DIT--INP 265 (1108)
T ss_dssp TTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-HHHHHHHHTS------SEEEECS-SCB--CCC
T ss_pred HcCCCEEEECCCCCChHHHHHHHHHHHHhcC-CeEEEEcCcHHHHHH-HHHHHHHHhC------CccEEeC-ccc--cCC
Confidence 4467788899999999987666666555554 699999999999877 4444443210 0111111 110 112
Q ss_pred ccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH-HHHHH
Q psy10478 111 LSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV-IDDIC 185 (451)
Q Consensus 111 ~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~-~~~i~ 185 (451)
-..+++.||+++...+.. +.++++|||||||++.+++ |...+..+... ..++.++++||||+++.. ...+.
T Consensus 266 ~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~--rg~~~e~ii~~--l~~~~qvl~lSATipn~~e~a~~l 341 (1108)
T 3l9o_A 266 DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE--RGVVWEETIIL--LPDKVRYVFLSATIPNAMEFAEWI 341 (1108)
T ss_dssp SCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH--HHHHHHHHHHH--SCTTSEEEEEECSCSSCHHHHHHH
T ss_pred CCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccc--hHHHHHHHHHh--cCCCceEEEEcCCCCCHHHHHHHH
Confidence 256788888877665533 4579999999999999887 67777666333 345889999999987653 12222
Q ss_pred HhcCCCCCeEEecCCCCCceEEEEEe------------cc----------------------------------------
Q psy10478 186 TSLMLRDPNIINTGFDRPNLYLAASV------------KQ---------------------------------------- 213 (451)
Q Consensus 186 ~~l~l~~~~~~~~~~~~~~l~~~~~~------------~~---------------------------------------- 213 (451)
.........++........+...+.. ..
T Consensus 342 ~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (1108)
T 3l9o_A 342 CKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSA 421 (1108)
T ss_dssp HHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------------------------
T ss_pred HhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccc
Confidence 22222222333322222222111110 00
Q ss_pred ----hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCC---------------------------------
Q psy10478 214 ----DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGI--------------------------------- 256 (451)
Q Consensus 214 ----~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~--------------------------------- 256 (451)
......+...+... ...++||||++++.|+.++..|...++
T Consensus 422 ~~~~~~~l~~li~~l~~~--~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l 499 (1108)
T 3l9o_A 422 KGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHI 499 (1108)
T ss_dssp ---CHHHHHHHHHHHHHT--TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHH
T ss_pred cccchhHHHHHHHHHHhc--CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHH
Confidence 11112222333322 567999999999999999998864322
Q ss_pred ------CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCC--------CCCHHHHHHHhccc
Q psy10478 257 ------QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA--------PKDLSAYYQEIGRA 322 (451)
Q Consensus 257 ------~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~--------p~s~~~y~Qr~GRa 322 (451)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++. |.|..+|+||+|||
T Consensus 500 ~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRA 579 (1108)
T 3l9o_A 500 LPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRA 579 (1108)
T ss_dssp THHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHS
T ss_pred HHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhccc
Confidence 2789999999999999999999999999999999999999999999997664 34888999999999
Q ss_pred CCCC--CCcEEEEEeecc-cHHHHhhhhc
Q psy10478 323 GRDG--LSSVCYTFYKTA-DFTKNNMIFQ 348 (451)
Q Consensus 323 gR~g--~~g~~i~l~~~~-d~~~~~~~~~ 348 (451)
||.| ..|.+++++++. +...+..++.
T Consensus 580 GR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 580 GRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp CCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred CCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 9999 689999998876 3344444443
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-29 Score=279.03 Aligned_cols=299 Identities=16% Similarity=0.168 Sum_probs=202.5
Q ss_pred hcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcc
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCL 111 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~ 111 (451)
.+.+.++++-+++|+|......+...+..| .+++|++|.+.+.++ +...+....- ..+..-| +.. ...-
T Consensus 100 ~g~~vLV~apTGSGKTlva~lai~~~l~~g-~rvL~l~PtkaLa~Q-~~~~l~~~~~------~vglltG-d~~--~~~~ 168 (1010)
T 2xgj_A 100 RGESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQ-KYRELLAEFG------DVGLMTG-DIT--INPD 168 (1010)
T ss_dssp HTCEEEEECCTTSCHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHH-HHHHHHHHHS------CEEEECS-SCE--ECTT
T ss_pred cCCCEEEECCCCCChHHHHHHHHHHHhccC-CeEEEECChHHHHHH-HHHHHHHHhC------CEEEEeC-CCc--cCCC
Confidence 356778899999999987544444444444 699999999999877 5444443210 1111111 111 0112
Q ss_pred cccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHh
Q psy10478 112 SELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187 (451)
Q Consensus 112 ~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~ 187 (451)
..+++.||+.+...+. .+.++++|||||||++.+++ +...+..+.. ...++.++++||||+++.. ++..+
T Consensus 169 ~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~--rg~~~e~il~--~l~~~~~il~LSATi~n~~--e~a~~ 242 (1010)
T 2xgj_A 169 AGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE--RGVVWEETII--LLPDKVRYVFLSATIPNAM--EFAEW 242 (1010)
T ss_dssp CSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT--THHHHHHHHH--HSCTTCEEEEEECCCTTHH--HHHHH
T ss_pred CCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccc--hhHHHHHHHH--hcCCCCeEEEEcCCCCCHH--HHHHH
Confidence 4577778776654432 25689999999999999876 4455544432 2235789999999997653 23333
Q ss_pred cC--CCCC-eEEecCCCCCceEEEEEe------------cc---------------------------------------
Q psy10478 188 LM--LRDP-NIINTGFDRPNLYLAASV------------KQ--------------------------------------- 213 (451)
Q Consensus 188 l~--l~~~-~~~~~~~~~~~l~~~~~~------------~~--------------------------------------- 213 (451)
++ ...+ .++.......++...+.. ..
T Consensus 243 l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~ 322 (1010)
T 2xgj_A 243 ICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGS 322 (1010)
T ss_dssp HHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------
T ss_pred HHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccccccccccccccccc
Confidence 32 1222 222222111112111110 00
Q ss_pred -----hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC-------------------------------
Q psy10478 214 -----DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ------------------------------- 257 (451)
Q Consensus 214 -----~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~------------------------------- 257 (451)
......+...+... ...++||||+|++.|+.++..|...++.
T Consensus 323 ~~~~~~~~l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~ 400 (1010)
T 2xgj_A 323 AKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKH 400 (1010)
T ss_dssp ------CHHHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHH
T ss_pred ccccchHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHH
Confidence 01122233333332 4569999999999999999998765432
Q ss_pred --------eeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEE----eCC----CCCHHHHHHHhcc
Q psy10478 258 --------NRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH----YGA----PKDLSAYYQEIGR 321 (451)
Q Consensus 258 --------v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~----~~~----p~s~~~y~Qr~GR 321 (451)
+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||. |.|..+|+||+||
T Consensus 401 l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GR 480 (1010)
T 2xgj_A 401 ILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGR 480 (1010)
T ss_dssp HHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTT
T ss_pred HHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhh
Confidence 788999999999999999999999999999999999999999999999 998 8899999999999
Q ss_pred cCCCCC--CcEEEEEeecc-cHHHHhhhhcC
Q psy10478 322 AGRDGL--SSVCYTFYKTA-DFTKNNMIFQP 349 (451)
Q Consensus 322 agR~g~--~g~~i~l~~~~-d~~~~~~~~~~ 349 (451)
|||.|. .|.+++++++. +...+..++..
T Consensus 481 AGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~ 511 (1010)
T 2xgj_A 481 AGRRGLDDRGIVIMMIDEKMEPQVAKGMVKG 511 (1010)
T ss_dssp BCCTTTCSSEEEEEEECSCCCHHHHHHHHSC
T ss_pred cccCCCCCceEEEEEECCCCCHHHHHHHHhC
Confidence 999996 59999999865 55555555443
No 27
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=1.1e-30 Score=265.75 Aligned_cols=264 Identities=13% Similarity=0.049 Sum_probs=178.1
Q ss_pred hcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcc
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCL 111 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~ 111 (451)
.+++.++.+-++||+|......+++.+..++.+++|++|.+.+..+ ..+.+..+++ . + ..
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q-~~~~l~~~~v--------~--~---------~~ 66 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSE-MKEAFHGLDV--------K--F---------HT 66 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHH-HHHHTTTSCE--------E--E---------ES
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHH-HHHHHhcCCe--------E--E---------ec
Confidence 4667788899999999987666666555566899999999998776 5555544310 0 0 00
Q ss_pred ccc-ccCCCCchhhhcc------------ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 112 SEL-RLPLPDVPILFLS------------RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 112 ~~l-~~~~~~~~~~~l~------------~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
..+ .+.+|++.+..+. .+.++++|||||||++ +.+ |...+..+..+.. .++.++++||||+++
T Consensus 67 ~~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~--~~~~~~~~~~~~~-~~~~~~l~~SAT~~~ 142 (440)
T 1yks_A 67 QAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA--SIAARGWAAHRAR-ANESATILMTATPPG 142 (440)
T ss_dssp SCCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH--HHHHHHHHHHHHH-TTSCEEEEECSSCTT
T ss_pred ccceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc--hHHHHHHHHHHhc-cCCceEEEEeCCCCc
Confidence 111 3666766654332 1578999999999998 212 3333333333322 357899999999987
Q ss_pred HHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCe
Q psy10478 179 VVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQN 258 (451)
Q Consensus 179 ~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v 258 (451)
.+.. ......+... .... ...... ..+...+.. .++++||||++++.++.+++.|++.++.+
T Consensus 143 ~~~~----~~~~~~~~~~-~~~~---------~~~~~~-~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v 204 (440)
T 1yks_A 143 TSDE----FPHSNGEIED-VQTD---------IPSEPW-NTGHDWILA---DKRPTAWFLPSIRAANVMAASLRKAGKSV 204 (440)
T ss_dssp CCCS----SCCCSSCEEE-EECC---------CCSSCC-SSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHHHTTCCE
T ss_pred hhhh----hhhcCCCeeE-eeec---------cChHHH-HHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHcCCCE
Confidence 6432 1111111111 0000 000010 111122222 46899999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEE-------------------eCCCCCHHHHHHHh
Q psy10478 259 RPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH-------------------YGAPKDLSAYYQEI 319 (451)
Q Consensus 259 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~-------------------~~~p~s~~~y~Qr~ 319 (451)
..+|| ++|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+.++|+||+
T Consensus 205 ~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~ 279 (440)
T 1yks_A 205 VVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRR 279 (440)
T ss_dssp EECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHH
T ss_pred EEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhc
Confidence 99999 4688999999999999999999999999999 999996 88899999999999
Q ss_pred cccCCC-CCCcEEEEEe---ecccHHH
Q psy10478 320 GRAGRD-GLSSVCYTFY---KTADFTK 342 (451)
Q Consensus 320 GRagR~-g~~g~~i~l~---~~~d~~~ 342 (451)
||+||. |.+|.|++|+ ++.|...
T Consensus 280 GR~GR~g~~~g~~~~l~~~~~~~~~~~ 306 (440)
T 1yks_A 280 GRIGRNPNRDGDSYYYSEPTSENNAHH 306 (440)
T ss_dssp TTSSCCTTCCCEEEEECSCCCCCCTTB
T ss_pred cccCCCCCCCceEEEEeccCChhhhhh
Confidence 999997 6899999997 4555443
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.96 E-value=7.5e-30 Score=267.00 Aligned_cols=303 Identities=15% Similarity=0.181 Sum_probs=158.1
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCC----CeeEEEeCccccccchhhHhhhhhhhh---hhcccceeccccCCCCc
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDN----CRQVVYMTPEYVTNNTSFLSRIPRIVL---IAIDEAHCVSQWGHDFR 105 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~----~~~vl~~tPe~l~~~~~~~~~l~~~~~---~~~de~~~~~~~~~~~~ 105 (451)
+++.++++-+|+|+|......+.+.+..+ ..++||++|.+.+..+ +...+..+.- +.+...+....... ..
T Consensus 22 ~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~ 99 (556)
T 4a2p_A 22 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQ-QKNVFKHHFERQGYSVQGISGENFSNV-SV 99 (556)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHH-HHHHHHHHHGGGTCCEEECCCC------CH
T ss_pred CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHH-HHHHHHHHhcccCceEEEEeCCCCcch-hH
Confidence 46788899999999988766666555443 5689999999887766 5555544311 00111111111111 11
Q ss_pred chhhcccccccCCCCchhhhcc-----ccCcccEEEEccccccccCCCCcHHHHHHHHH--hhccCCCCCEEEEEeeCCh
Q psy10478 106 PSYRCLSELRLPLPDVPILFLS-----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSE--LRLPLPDVPILAVTATATP 178 (451)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~l~-----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~--l~~~~~~~~~v~lSAT~~~ 178 (451)
.....-.++++.||+.....+. .+.++++|||||||++..++. +......+.. +....+..++++||||++.
T Consensus 100 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 100 EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGV 178 (556)
T ss_dssp HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCC
T ss_pred HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHHhhhcccCCCCeEEEEeCCccc
Confidence 1222346788999998876553 356789999999999998763 3332222211 1112356889999999954
Q ss_pred H----------HHHHHHHhcCCCCCeEEecC---------CCCCceEEEEEec---------------------------
Q psy10478 179 V----------VIDDICTSLMLRDPNIINTG---------FDRPNLYLAASVK--------------------------- 212 (451)
Q Consensus 179 ~----------~~~~i~~~l~l~~~~~~~~~---------~~~~~l~~~~~~~--------------------------- 212 (451)
. ....+...++.. .+.... ..+|...+.....
T Consensus 179 ~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (556)
T 4a2p_A 179 GNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSV 256 (556)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTCS--EEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CchhhHHHHHHHHHHHHHhcCCe--EecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhh
Confidence 2 122223333211 111000 0112211111110
Q ss_pred --------------------------------------------------------------------------------
Q psy10478 213 -------------------------------------------------------------------------------- 212 (451)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (451)
T Consensus 257 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 336 (556)
T 4a2p_A 257 DTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTN 336 (556)
T ss_dssp --------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------chhHHHHHHHHHhhcc--CCCCcEEEEcCChhHHHHHHHHHHHC---
Q psy10478 213 ---------------------------------QDDIMADLRKLTNFEN--QFEGSTIIYCPTKVICEKVCDVLSRN--- 254 (451)
Q Consensus 213 ---------------------------------~~~~~~~L~~~l~~~~--~~~~~~iVF~~t~~~~~~l~~~L~~~--- 254 (451)
...+...|.+++.... ..+.++||||+++..++.+++.|.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~ 416 (556)
T 4a2p_A 337 VKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL 416 (556)
T ss_dssp HHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGG
T ss_pred HHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCc
Confidence 0123333444443321 36789999999999999999999875
Q ss_pred ---------CCCeeeecCCCCHHHHHHHHHHhhc-CCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCC
Q psy10478 255 ---------GIQNRPYHAHISLKQRKEIHGLFVK-DLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGR 324 (451)
Q Consensus 255 ---------~~~v~~~h~~l~~~~R~~~~~~f~~-g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR 324 (451)
|.....+||+|+.++|.++++.|++ |+++|||||+++++|+|+|++++||+||+|.|+..|+||+|| ||
T Consensus 417 ~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR 495 (556)
T 4a2p_A 417 NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR 495 (556)
T ss_dssp GSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC------
T ss_pred ceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC
Confidence 5556677889999999999999999 999999999999999999999999999999999999999999 99
Q ss_pred CCCCcEEEEEeecccHHH
Q psy10478 325 DGLSSVCYTFYKTADFTK 342 (451)
Q Consensus 325 ~g~~g~~i~l~~~~d~~~ 342 (451)
. ++|.+++++++.+...
T Consensus 496 ~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 496 A-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp ----CCEEEEESCHHHHH
T ss_pred C-CCceEEEEEeCcchHH
Confidence 9 7899999998876543
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=4.9e-29 Score=255.24 Aligned_cols=301 Identities=16% Similarity=0.177 Sum_probs=203.1
Q ss_pred cchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcc---hhhcc
Q psy10478 35 KYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRP---SYRCL 111 (451)
Q Consensus 35 ~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~---~~~~~ 111 (451)
+.++++-+|+|+|..-...+...+.....++||++|.+.+..+ |...+....-. .........|..... ....-
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q-~~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~ 101 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQ-HAESFRRLFNL--PPEKIVALTGEKSPEERSKAWAR 101 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHH-HHHHHHHHBCS--CGGGEEEECSCSCHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHH-HHHHHHHHhCc--chhheEEeeCCcchhhhhhhccC
Confidence 7788999999999876655555444345689999999777655 66655543100 000111111111111 11123
Q ss_pred cccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCC--hHHHHHHH
Q psy10478 112 SELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT--PVVIDDIC 185 (451)
Q Consensus 112 ~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~--~~~~~~i~ 185 (451)
.++++.||+.....+. .+.++++||+||||++.... .+..... .+....+..++++||||+. .....++.
T Consensus 102 ~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~-~~~~~~~---~~~~~~~~~~~l~lTaTp~~~~~~~~~l~ 177 (494)
T 1wp9_A 102 AKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNY-AYVFIAR---EYKRQAKNPLVIGLTASPGSTPEKIMEVI 177 (494)
T ss_dssp CSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTC-HHHHHHH---HHHHHCSSCCEEEEESCSCSSHHHHHHHH
T ss_pred CCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCC-cHHHHHH---HHHhcCCCCeEEEEecCCCCCcHHHHHHH
Confidence 5677888877765433 24679999999999987532 1222222 2233356789999999997 33445566
Q ss_pred HhcCCCCCeEEecCC-------CCCceEEEEEe-----------------------------------------------
Q psy10478 186 TSLMLRDPNIINTGF-------DRPNLYLAASV----------------------------------------------- 211 (451)
Q Consensus 186 ~~l~l~~~~~~~~~~-------~~~~l~~~~~~----------------------------------------------- 211 (451)
..++...+....... ......+....
T Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (494)
T 1wp9_A 178 NNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQI 257 (494)
T ss_dssp HHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHH
T ss_pred HhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHH
Confidence 666543222111100 00001110000
Q ss_pred --------------------------------------------------------------------------------
Q psy10478 212 -------------------------------------------------------------------------------- 211 (451)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (451)
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (494)
T 1wp9_A 258 INEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKE 337 (494)
T ss_dssp HHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence
Q ss_pred --cchhHHHHHHHHHhhcc--CCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecC--------CCCHHHHHHHHHHhhc
Q psy10478 212 --KQDDIMADLRKLTNFEN--QFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHA--------HISLKQRKEIHGLFVK 279 (451)
Q Consensus 212 --~~~~~~~~L~~~l~~~~--~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~--------~l~~~~R~~~~~~f~~ 279 (451)
....+...|.+++.... ..+.++||||+++..++.+++.|.+.|+.+..+|| +|+..+|.++++.|++
T Consensus 338 ~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 417 (494)
T 1wp9_A 338 IGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR 417 (494)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhc
Confidence 01123344444544421 36899999999999999999999999999999999 9999999999999999
Q ss_pred CCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHH
Q psy10478 280 DLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKN 343 (451)
Q Consensus 280 g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~ 343 (451)
|+.+|||||+++++|+|+|++++||++|+|.++..|.||+||+||.|+ |.++.++.+.+.+..
T Consensus 418 ~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee~ 480 (494)
T 1wp9_A 418 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEA 480 (494)
T ss_dssp TSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHHH
T ss_pred CCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHHH
Confidence 999999999999999999999999999999999999999999999997 999999998766543
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=3.2e-29 Score=276.60 Aligned_cols=111 Identities=20% Similarity=0.321 Sum_probs=67.0
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHC------------CCCeeeecCCCCHHHHHHHHHHhhc-CCceEEEEcccccccc
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRN------------GIQNRPYHAHISLKQRKEIHGLFVK-DLIKVVVATCAFGMGI 295 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~------------~~~v~~~h~~l~~~~R~~~~~~f~~-g~~~iLVaT~~~~~Gi 295 (451)
..+.++||||+++..++.+++.|.+. |.....+||+|+..+|.++++.|++ |+++|||||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 36789999999999999999999986 5556677999999999999999999 9999999999999999
Q ss_pred ccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 296 D~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
|+|++++||+||+|.|+..|+||+|| ||. .+|.++++++..+..
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred cchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999999999999999999 999 688999998876654
No 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.96 E-value=1.1e-29 Score=265.35 Aligned_cols=303 Identities=17% Similarity=0.160 Sum_probs=181.1
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCC----CeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCC----C
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDN----CRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHD----F 104 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~----~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~----~ 104 (451)
+++.++++-+|+|+|......+.+.+..+ ..++||++|.+.+..+ +...+..+.-.. ........|.. .
T Consensus 19 ~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~~--~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 19 GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQ-QATVFSRYFERL--GYNIASISGATSDSVS 95 (555)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHH-HHHHHHHHHHTT--TCCEEEECTTTGGGSC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHH-HHHHHHHHhccC--CcEEEEEcCCCcchhh
Confidence 56788899999999988766666655543 5689999999887766 555554431000 00111111111 1
Q ss_pred cchhhcccccccCCCCchhhhcc-----ccCcccEEEEccccccccCCCCcHHHHHHHHHh-hcc--CCCCCEEEEEeeC
Q psy10478 105 RPSYRCLSELRLPLPDVPILFLS-----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSEL-RLP--LPDVPILAVTATA 176 (451)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~~l~-----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l-~~~--~~~~~~v~lSAT~ 176 (451)
......-.++++.||+.....+. .+.++++|||||||++..++. ++......... ... .+..+++++|||+
T Consensus 96 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~ 174 (555)
T 3tbk_A 96 VQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLDHKLGESRDPLPQVVGLTASV 174 (555)
T ss_dssp HHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHHHHTSSCCSCCCEEEEEESCC
T ss_pred HHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHHhhhccccCCCCeEEEEecCc
Confidence 11122336788999998876654 346789999999999987652 44433222111 111 2567899999999
Q ss_pred ChH----------HHHHHHHhcCCCCCeEEec---------CCCCCceEEEEEec-------------------------
Q psy10478 177 TPV----------VIDDICTSLMLRDPNIINT---------GFDRPNLYLAASVK------------------------- 212 (451)
Q Consensus 177 ~~~----------~~~~i~~~l~l~~~~~~~~---------~~~~~~l~~~~~~~------------------------- 212 (451)
+.. ....+...++. ..+... ...+|...+.....
T Consensus 175 ~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (555)
T 3tbk_A 175 GVGDAKTAEEAMQHICKLCAALDA--SVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVS 252 (555)
T ss_dssp CCTTCCSHHHHHHHHHHHHHHTTC--SEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccCccccHHHHHHHHHHHHHhcCC--eeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 652 12233333331 111110 01222222211110
Q ss_pred --------------------------------------------------------------------------------
Q psy10478 213 -------------------------------------------------------------------------------- 212 (451)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (451)
T Consensus 253 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (555)
T 3tbk_A 253 EELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAF 332 (555)
T ss_dssp HHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------chhHHHHHHHHHhhc--cCCCCcEEEEcCChhHHHHHHHHHHHC
Q psy10478 213 ------------------------------------QDDIMADLRKLTNFE--NQFEGSTIIYCPTKVICEKVCDVLSRN 254 (451)
Q Consensus 213 ------------------------------------~~~~~~~L~~~l~~~--~~~~~~~iVF~~t~~~~~~l~~~L~~~ 254 (451)
...+...|.+++... ...+.++||||+++..++.++..|...
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~ 412 (555)
T 3tbk_A 333 FHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEEN 412 (555)
T ss_dssp HHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHC
T ss_pred HHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhC
Confidence 012333344444332 125689999999999999999999986
Q ss_pred C------------CCeeeecCCCCHHHHHHHHHHhhc-CCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcc
Q psy10478 255 G------------IQNRPYHAHISLKQRKEIHGLFVK-DLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGR 321 (451)
Q Consensus 255 ~------------~~v~~~h~~l~~~~R~~~~~~f~~-g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GR 321 (451)
+ .....+||+|+.++|.++++.|++ |+++|||||+++++|+|+|++++||+||+|.|+..|+||+||
T Consensus 413 ~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR 492 (555)
T 3tbk_A 413 PALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR 492 (555)
T ss_dssp GGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC
T ss_pred cCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc
Confidence 3 344556679999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEEeecccHHHH
Q psy10478 322 AGRDGLSSVCYTFYKTADFTKN 343 (451)
Q Consensus 322 agR~g~~g~~i~l~~~~d~~~~ 343 (451)
||. ++|.+++|+++.+....
T Consensus 493 -gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 493 -GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp -CTT-TSCEEEEEESCHHHHHH
T ss_pred -CcC-CCceEEEEEcCCCHHHH
Confidence 998 79999999988766544
No 32
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=2.2e-29 Score=265.29 Aligned_cols=270 Identities=15% Similarity=0.085 Sum_probs=190.3
Q ss_pred HhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcc
Q psy10478 27 LELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRP 106 (451)
Q Consensus 27 ~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~ 106 (451)
++....+++.+..+-++||+|......+++.+...+.++||++|.+.+..+ ..+.+.... ...+..
T Consensus 180 i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Q-i~~~l~~~~--------v~~~~~----- 245 (618)
T 2whx_A 180 EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAE-MEEALRGLP--------IRYQTP----- 245 (618)
T ss_dssp GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHH-HHHHTTTSC--------EEECCT-----
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHH-HHHHhcCCc--------eeEecc-----
Confidence 455566788889999999999986555555555566799999999999876 555554321 000000
Q ss_pred hhhcccccccCCCCchhhhcc------------ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEe
Q psy10478 107 SYRCLSELRLPLPDVPILFLS------------RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTA 174 (451)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~l~------------~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSA 174 (451)
..-...+|++.+..+. .+.++++|||||||++ +.+ |...+..+..... .++.++++|||
T Consensus 246 -----~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~i~~~l~-~~~~q~il~SA 316 (618)
T 2whx_A 246 -----AVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYISTRVE-MGEAAAIFMTA 316 (618)
T ss_dssp -----TSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHH--HHHHHHHHHHHHH-HTSCEEEEECS
T ss_pred -----cceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-Ccc--HHHHHHHHHHHhc-ccCccEEEEEC
Confidence 0012455555543321 1578999999999998 323 5555555543321 15789999999
Q ss_pred eCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC
Q psy10478 175 TATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254 (451)
Q Consensus 175 T~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~ 254 (451)
|+++.... ... .++..+......|. .....+...+.. .++++||||+|++.++.+++.|.+.
T Consensus 317 T~~~~~~~----~~~-~~~~~~~v~~~~~~----------~~~~~ll~~l~~---~~~~~LVF~~s~~~a~~l~~~L~~~ 378 (618)
T 2whx_A 317 TPPGSTDP----FPQ-SNSPIEDIEREIPE----------RSWNTGFDWITD---YQGKTVWFVPSIKAGNDIANCLRKS 378 (618)
T ss_dssp SCTTCCCS----SCC-CSSCEEEEECCCCS----------SCCSSSCHHHHH---CCSCEEEECSSHHHHHHHHHHHHHT
T ss_pred CCchhhhh----hhc-cCCceeeecccCCH----------HHHHHHHHHHHh---CCCCEEEEECChhHHHHHHHHHHHc
Confidence 99876421 111 23332222111111 001112222222 4679999999999999999999999
Q ss_pred CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEE--------------------EEeCCCCCHHH
Q psy10478 255 GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCV--------------------IHYGAPKDLSA 314 (451)
Q Consensus 255 ~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~V--------------------I~~~~p~s~~~ 314 (451)
++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++| |+++.|.+.++
T Consensus 379 g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~ 453 (618)
T 2whx_A 379 GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 453 (618)
T ss_dssp TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHH
T ss_pred CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHH
Confidence 9999999985 688899999999999999999999999997 9888 77778999999
Q ss_pred HHHHhcccCCCCC-CcEEEEEee---cccHHH
Q psy10478 315 YYQEIGRAGRDGL-SSVCYTFYK---TADFTK 342 (451)
Q Consensus 315 y~Qr~GRagR~g~-~g~~i~l~~---~~d~~~ 342 (451)
|+||+||+||.|. +|.+++|++ +.|...
T Consensus 454 yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~ 485 (618)
T 2whx_A 454 AAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDH 485 (618)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCCCCCCTTC
T ss_pred HHHhccccCCCCCCCCeEEEEccCCchhhHHH
Confidence 9999999999975 899999997 555443
No 33
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=3.9e-29 Score=265.09 Aligned_cols=262 Identities=14% Similarity=0.109 Sum_probs=183.4
Q ss_pred hcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcc
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCL 111 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~ 111 (451)
.+++.++.+-++||+|......+++.+..++.+++|++|.+.+..+ ..+.+..+++ .. ..
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q-~~~~l~~~~i--------~~-----------~~ 299 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAE-MAEALRGLPV--------RY-----------LT 299 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHH-HHHHTTTSCC--------EE-----------CC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHH-HHHHHhcCCe--------ee-----------ec
Confidence 5778888999999999987666665555566899999999998876 5555544310 00 00
Q ss_pred ccc-ccCCCCchhhhcc------------ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 112 SEL-RLPLPDVPILFLS------------RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 112 ~~l-~~~~~~~~~~~l~------------~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
..+ ...+|++.+..+. .+.++++|||||||++. ..+...+..+..+.. .++.++++||||+++
T Consensus 300 ~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~---~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~ 375 (673)
T 2wv9_A 300 PAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD---PASIAARGYIATRVE-AGEAAAIFMTATPPG 375 (673)
T ss_dssp C---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC---HHHHHHHHHHHHHHH-TTSCEEEEECSSCTT
T ss_pred ccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC---ccHHHHHHHHHHhcc-ccCCcEEEEcCCCCh
Confidence 011 1556665543332 35789999999999982 112233333333221 257899999999987
Q ss_pred HHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCe
Q psy10478 179 VVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQN 258 (451)
Q Consensus 179 ~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v 258 (451)
.+.. ......+. .. +........ ...+...+.. .++++||||++++.++.+++.|.+.++.+
T Consensus 376 ~i~~----~~~~~~~i-~~---------v~~~~~~~~-~~~~l~~l~~---~~~~~lVF~~s~~~~e~la~~L~~~g~~v 437 (673)
T 2wv9_A 376 TSDP----FPDTNSPV-HD---------VSSEIPDRA-WSSGFEWITD---YAGKTVWFVASVKMSNEIAQCLQRAGKRV 437 (673)
T ss_dssp CCCS----SCCCSSCE-EE---------EECCCCSSC-CSSCCHHHHS---CCSCEEEECSSHHHHHHHHHHHHTTTCCE
T ss_pred hhhh----hcccCCce-EE---------EeeecCHHH-HHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHhCCCeE
Confidence 6421 11111111 11 100000011 1111122222 57899999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEE--------------------eCCCCCHHHHHHH
Q psy10478 259 RPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH--------------------YGAPKDLSAYYQE 318 (451)
Q Consensus 259 ~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~--------------------~~~p~s~~~y~Qr 318 (451)
..+||. +|.++++.|++|+.+|||||+++++|||+| +++||+ ++.|.+.++|+||
T Consensus 438 ~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr 512 (673)
T 2wv9_A 438 IQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQR 512 (673)
T ss_dssp EEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHH
T ss_pred EEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHH
Confidence 999994 799999999999999999999999999999 999998 5689999999999
Q ss_pred hcccCCC-CCCcEEEEEe---ecccH
Q psy10478 319 IGRAGRD-GLSSVCYTFY---KTADF 340 (451)
Q Consensus 319 ~GRagR~-g~~g~~i~l~---~~~d~ 340 (451)
+||+||. |+.|.|++|+ ++.|.
T Consensus 513 ~GRaGR~~g~~G~ai~l~~~~~~~d~ 538 (673)
T 2wv9_A 513 RGRVGRNPSQIGDEYHYGGGTSEDDT 538 (673)
T ss_dssp HTTSSCCSSCCCEEEEECSCCCCCCT
T ss_pred hhccCCCCCCCCEEEEEEecCChhHH
Confidence 9999999 7899999996 45553
No 34
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=1.2e-29 Score=259.47 Aligned_cols=260 Identities=16% Similarity=0.146 Sum_probs=175.4
Q ss_pred hhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcch
Q psy10478 28 ELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPS 107 (451)
Q Consensus 28 ~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~ 107 (451)
.....+++.++++-++||+|......+++.+...+.++||++|.+.+..+ ....+....+ ..+-+ ...
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q-~~~~l~g~~v--------~~~~~-~~~-- 83 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAE-MAEALRGLPV--------RYQTS-AVQ-- 83 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHH-HHHHTTTSCE--------EECC-------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHH-HHHHhcCceE--------eEEec-ccc--
Confidence 33445677888999999999986666665555455799999999998876 5555543310 00000 000
Q ss_pred hhcccccccCCCCchhhhc------------cccCcccEEEEcccccc-----ccCCCCcHHHHHHHHHhhccCCCCCEE
Q psy10478 108 YRCLSELRLPLPDVPILFL------------SRIPRIVLIAIDEAHCV-----SQWGHDFRPSYRCLSELRLPLPDVPIL 170 (451)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~l------------~~l~~l~~vViDEah~~-----~~~g~~fr~~~~~l~~l~~~~~~~~~v 170 (451)
...+|++.+..+ ..+.++++|||||||++ ..+| | +.. +...++.+++
T Consensus 84 -------~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--~------~~~-~~~~~~~~~i 147 (459)
T 2z83_A 84 -------REHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARG--Y------IAT-KVELGEAAAI 147 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHH--H------HHH-HHHTTSCEEE
T ss_pred -------cCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHH--H------HHH-HhccCCccEE
Confidence 002333332211 12568999999999984 2222 1 111 1123689999
Q ss_pred EEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHH
Q psy10478 171 AVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDV 250 (451)
Q Consensus 171 ~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~ 250 (451)
+||||+++.... ......|..... ...+ ......+..++.. .++++||||+|++.++.+++.
T Consensus 148 l~SAT~~~~~~~----~~~~~~pi~~~~-~~~~----------~~~~~~~~~~l~~---~~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 148 FMTATPPGTTDP----FPDSNAPIHDLQ-DEIP----------DRAWSSGYEWITE---YAGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp EECSSCTTCCCS----SCCCSSCEEEEE-CCCC----------SSCCSSCCHHHHH---CCSCEEEECSCHHHHHHHHHH
T ss_pred EEEcCCCcchhh----hccCCCCeEEec-ccCC----------cchhHHHHHHHHh---cCCCEEEEeCChHHHHHHHHH
Confidence 999999875421 111122222111 0000 0000111122222 468999999999999999999
Q ss_pred HHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEE--------------------eCCCC
Q psy10478 251 LSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH--------------------YGAPK 310 (451)
Q Consensus 251 L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~--------------------~~~p~ 310 (451)
|.+.++.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~ 284 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI 284 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC
Confidence 99999999999995 6888999999999999999999999999999 99999 66999
Q ss_pred CHHHHHHHhcccCCCCC-CcEEEEEeecc
Q psy10478 311 DLSAYYQEIGRAGRDGL-SSVCYTFYKTA 338 (451)
Q Consensus 311 s~~~y~Qr~GRagR~g~-~g~~i~l~~~~ 338 (451)
|..+|+||+|||||.|. +|.+++|+.+.
T Consensus 285 s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 285 TSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999999997 89999998875
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=2.5e-28 Score=280.95 Aligned_cols=322 Identities=14% Similarity=0.133 Sum_probs=221.8
Q ss_pred HHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc-CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 22 RVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC-DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 22 q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~-~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
|...+..+.....+.++++-++||+|......+++.+. .++.++||++|.+.+.++.+..+...++-.. .... ...
T Consensus 931 Q~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~--g~~V-~~l 1007 (1724)
T 4f92_B 931 QTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRL--NKKV-VLL 1007 (1724)
T ss_dssp HHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTS--CCCE-EEC
T ss_pred HHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhc--CCEE-EEE
Confidence 33444555555667888999999999775555555543 4467899999999998773333322221000 0001 112
Q ss_pred CCCCcch--hhcccccccCCCCchhhhccc------cCcccEEEEccccccccCCCCcHHHHHH----HHHhhc-cCCCC
Q psy10478 101 GHDFRPS--YRCLSELRLPLPDVPILFLSR------IPRIVLIAIDEAHCVSQWGHDFRPSYRC----LSELRL-PLPDV 167 (451)
Q Consensus 101 ~~~~~~~--~~~~~~l~~~~~~~~~~~l~~------l~~l~~vViDEah~~~~~g~~fr~~~~~----l~~l~~-~~~~~ 167 (451)
+++.... ...-.++++.||+++...+.+ +.++++||+||+|.+.+. ..+.+.. +..+.. ..++.
T Consensus 1008 tGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~---rg~~le~il~rl~~i~~~~~~~~ 1084 (1724)
T 4f92_B 1008 TGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE---NGPVLEVICSRMRYISSQIERPI 1084 (1724)
T ss_dssp CSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST---THHHHHHHHHHHHHHHHTTSSCC
T ss_pred ECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC---CCccHHHHHHHHHHHHhhcCCCc
Confidence 2222222 223467899999987555432 567999999999998753 3344432 222222 23578
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecC-CCCCc-eEEEEEecc----hh----HHHHHHHHHhhccCCCCcEEEE
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTG-FDRPN-LYLAASVKQ----DD----IMADLRKLTNFENQFEGSTIIY 237 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~-~~~~~-l~~~~~~~~----~~----~~~~L~~~l~~~~~~~~~~iVF 237 (451)
++|+||||+++. +++.+|++......+... ..||. +...+.... .. ....+...+... ..++++|||
T Consensus 1085 riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF 1161 (1724)
T 4f92_B 1085 RIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVF 1161 (1724)
T ss_dssp EEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEE
T ss_pred eEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeee
Confidence 999999999874 478999988765554433 33442 333322211 11 111222333332 377899999
Q ss_pred cCChhHHHHHHHHHHHC----------------------------------CCCeeeecCCCCHHHHHHHHHHhhcCCce
Q psy10478 238 CPTKVICEKVCDVLSRN----------------------------------GIQNRPYHAHISLKQRKEIHGLFVKDLIK 283 (451)
Q Consensus 238 ~~t~~~~~~l~~~L~~~----------------------------------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~ 283 (451)
|+|++.|+.++..|... ..++..|||+|++.+|..+++.|++|.++
T Consensus 1162 ~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~ 1241 (1724)
T 4f92_B 1162 VPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1241 (1724)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe
Confidence 99999999988776421 23588999999999999999999999999
Q ss_pred EEEEccccccccccCCccEEEE----e------CCCCCHHHHHHHhcccCCCCC--CcEEEEEeecccHHHHhhhhcCCC
Q psy10478 284 VVVATCAFGMGIDKPDVRCVIH----Y------GAPKDLSAYYQEIGRAGRDGL--SSVCYTFYKTADFTKNNMIFQPNL 351 (451)
Q Consensus 284 iLVaT~~~~~GiD~p~v~~VI~----~------~~p~s~~~y~Qr~GRagR~g~--~g~~i~l~~~~d~~~~~~~~~~~~ 351 (451)
|||||+++++|||+|.+++||. | ..|.+..+|.||+|||||.|. .|.+++++.+.+...++.++.+..
T Consensus 1242 VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~ 1321 (1724)
T 4f92_B 1242 VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPL 1321 (1724)
T ss_dssp EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCB
T ss_pred EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCC
Confidence 9999999999999999999983 2 346799999999999999986 699999999999999998887764
Q ss_pred C
Q psy10478 352 N 352 (451)
Q Consensus 352 ~ 352 (451)
+
T Consensus 1322 p 1322 (1724)
T 4f92_B 1322 P 1322 (1724)
T ss_dssp C
T ss_pred c
Confidence 3
No 36
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=1e-28 Score=252.09 Aligned_cols=267 Identities=15% Similarity=0.102 Sum_probs=175.1
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSE 113 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 113 (451)
...++.+-++||+|......++..+...+.+++|++|.+.+..+ ....+....+- +....+ ......-..
T Consensus 20 ~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q-~~~~l~g~~v~-----~~~~~~----~~~~~~~~~ 89 (451)
T 2jlq_A 20 RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAE-MEEALRGLPIR-----YQTPAV----KSDHTGREI 89 (451)
T ss_dssp CEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHH-HHHHTTTSCEE-----ECCTTC----SCCCCSSCC
T ss_pred CeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHH-HHHHhcCceee-----eeeccc----cccCCCCce
Confidence 33377888999999975555554444445799999999998876 55555433110 000000 000000001
Q ss_pred cccCCCCchhhhc---cccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCC
Q psy10478 114 LRLPLPDVPILFL---SRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190 (451)
Q Consensus 114 l~~~~~~~~~~~l---~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l 190 (451)
+...+++.....+ ..+.++++|||||||++ +.+ +......+ ..+...++.++++||||+++.... .+ .
T Consensus 90 i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~~~~~~~~~i~~SAT~~~~~~~----~~-~ 160 (451)
T 2jlq_A 90 VDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STRVEMGEAAAIFMTATPPGSTDP----FP-Q 160 (451)
T ss_dssp EEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHHHHTTSCEEEEECSSCTTCCCS----SC-C
T ss_pred EEEEChHHHHHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHhhcCCCceEEEEccCCCccchh----hh-c
Confidence 1111222111111 22568999999999987 222 22222222 122334689999999999875422 11 2
Q ss_pred CCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHH
Q psy10478 191 RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQR 270 (451)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R 270 (451)
..+.++......|...+ .. +...+.. .++++||||+|++.++.+++.|.+.|+.+..+||++.
T Consensus 161 ~~~~~~~~~~~~p~~~~------~~----~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~---- 223 (451)
T 2jlq_A 161 SNSPIEDIEREIPERSW------NT----GFDWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF---- 223 (451)
T ss_dssp CSSCEEEEECCCCSSCC------SS----SCHHHHH---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----
T ss_pred CCCceEecCccCCchhh------HH----HHHHHHh---CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----
Confidence 23333322211111111 01 1122222 4679999999999999999999999999999999864
Q ss_pred HHHHHHhhcCCceEEEEccccccccccCCccEEEEeC--------------------CCCCHHHHHHHhcccCCCCC-Cc
Q psy10478 271 KEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG--------------------APKDLSAYYQEIGRAGRDGL-SS 329 (451)
Q Consensus 271 ~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~--------------------~p~s~~~y~Qr~GRagR~g~-~g 329 (451)
.++++.|++|+.+|||||+++++|+|+|+ ++||++| .|.|..+|+||+||+||.|. +|
T Consensus 224 ~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g 302 (451)
T 2jlq_A 224 DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED 302 (451)
T ss_dssp HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCc
Confidence 67899999999999999999999999999 9999999 99999999999999999998 88
Q ss_pred EEEEEeec
Q psy10478 330 VCYTFYKT 337 (451)
Q Consensus 330 ~~i~l~~~ 337 (451)
.+++|+..
T Consensus 303 ~~~~~~~~ 310 (451)
T 2jlq_A 303 DQYVFSGD 310 (451)
T ss_dssp EEEEECSC
T ss_pred cEEEEeCC
Confidence 89888743
No 37
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=1.9e-28 Score=272.84 Aligned_cols=213 Identities=16% Similarity=0.198 Sum_probs=154.7
Q ss_pred cchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhccccc
Q psy10478 35 KYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSEL 114 (451)
Q Consensus 35 ~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l 114 (451)
.++.++.++|+.+..++...++.+.+|..+|+|+||++++... ..+ .
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l---~~l-~----------------------------- 193 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR---EKL-S----------------------------- 193 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSH---HHH-H-----------------------------
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHH---Hhh-c-----------------------------
Confidence 3456778888888877666777788888999999999997632 211 1
Q ss_pred ccCCCCchhhhccccCcccEEEEcccccccc-----------CCCCcHHH-HHHHHHhhc-------c--CCCCCEEEEE
Q psy10478 115 RLPLPDVPILFLSRIPRIVLIAIDEAHCVSQ-----------WGHDFRPS-YRCLSELRL-------P--LPDVPILAVT 173 (451)
Q Consensus 115 ~~~~~~~~~~~l~~l~~l~~vViDEah~~~~-----------~g~~fr~~-~~~l~~l~~-------~--~~~~~~v~lS 173 (451)
+.++++|||||||++++ || |.+. +..+..... . .++.+++++|
T Consensus 194 --------------~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g--f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~S 257 (1104)
T 4ddu_A 194 --------------QKRFDFVFVDDVDAVLKASRNIDTLLMMVG--IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSS 257 (1104)
T ss_dssp --------------TSCCSEEEESCHHHHTTSSHHHHHHHHTSS--CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEEC
T ss_pred --------------ccCcCEEEEeCCCccccccccchhhhHhcC--CCHHHHHHHHHhcccchhhhhhccCCCceEEEEc
Confidence 14799999999998775 55 6666 555543221 1 1578999999
Q ss_pred eeC-ChHHHHHHHHh-cCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHH
Q psy10478 174 ATA-TPVVIDDICTS-LMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVL 251 (451)
Q Consensus 174 AT~-~~~~~~~i~~~-l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L 251 (451)
||+ +......+... +.+. +.......+++....... .+...|..++.. .++++||||++++.++.++..|
T Consensus 258 AT~~p~~~~~~~~~~~l~i~---v~~~~~~~~~i~~~~~~~--~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L 329 (1104)
T 4ddu_A 258 ATAKPRGIRPLLFRDLLNFT---VGRLVSVARNITHVRISS--RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYL 329 (1104)
T ss_dssp BSSCCCSSTTHHHHHHTCCC---CCBCCCCCCCEEEEEESC--CCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHhhcceeEE---eccCCCCcCCceeEEEec--CHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHH
Confidence 995 44333223332 2211 111222334443333322 345566666665 3489999999999999999999
Q ss_pred HHCCCCee-eecCCCCHHHHHHHHHHhhcCCceEEEE----ccccccccccCC-ccEEEEeCCCC
Q psy10478 252 SRNGIQNR-PYHAHISLKQRKEIHGLFVKDLIKVVVA----TCAFGMGIDKPD-VRCVIHYGAPK 310 (451)
Q Consensus 252 ~~~~~~v~-~~h~~l~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiD~p~-v~~VI~~~~p~ 310 (451)
...|+.+. .+||. |++ ++.|++|+.+|||| |+++++|||+|+ |++|||||+|.
T Consensus 330 ~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 330 KRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99999998 99992 555 99999999999999 999999999999 99999999998
No 38
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.95 E-value=3.2e-28 Score=265.30 Aligned_cols=111 Identities=20% Similarity=0.321 Sum_probs=66.2
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHC------------CCCeeeecCCCCHHHHHHHHHHhhc-CCceEEEEcccccccc
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRN------------GIQNRPYHAHISLKQRKEIHGLFVK-DLIKVVVATCAFGMGI 295 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~------------~~~v~~~h~~l~~~~R~~~~~~f~~-g~~~iLVaT~~~~~Gi 295 (451)
..+.++||||+++..++.+++.|.+. |.....+||+|+..+|..+++.|++ |+++|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 36789999999999999999999873 5566778999999999999999999 9999999999999999
Q ss_pred ccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 296 D~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
|+|++++||+||+|.|+..|+||+|| ||. ++|.+++|+++.+..
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999999999999999 999 789999999887654
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.95 E-value=8.4e-30 Score=283.61 Aligned_cols=301 Identities=15% Similarity=0.093 Sum_probs=203.2
Q ss_pred HHHhhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhh-hccc-ceeccccCC
Q psy10478 25 KYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLI-AIDE-AHCVSQWGH 102 (451)
Q Consensus 25 ~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~-~~de-~~~~~~~~~ 102 (451)
..++....+++.+..+-+|||+|. ....++..+...+.++||++|.+.+..+ ....+..+.-. .+.. .......|.
T Consensus 63 ~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q-~~~~l~~l~~~~~i~~~~~v~~~~Gg 140 (1054)
T 1gku_B 63 MWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQ-AAETIRKYAEKAGVGTENLIGYYHGR 140 (1054)
T ss_dssp HHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHH-HHHHHHHHHTTTCCSGGGSEEECCSS
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHH-HHHHHHHHHhhcCCCccceEEEEeCC
Confidence 334444456788889999999996 4444455555556799999999999876 55544443110 0000 011111221
Q ss_pred C-Cc------chhhcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhh-----ccCCCCCEE
Q psy10478 103 D-FR------PSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR-----LPLPDVPIL 170 (451)
Q Consensus 103 ~-~~------~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~-----~~~~~~~~v 170 (451)
. .. ..... .+++++||++....+..++++++|||||||++++||+++++.+..+.-.. ...+..+++
T Consensus 141 ~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~ 219 (1054)
T 1gku_B 141 IPKREKENFMQNLRN-FKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGC 219 (1054)
T ss_dssp CCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSE
T ss_pred CChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceE
Confidence 1 11 11223 78999999999998888889999999999999999877777766543211 112467899
Q ss_pred EEEeeCChHHH---HHHHH-hcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHH
Q psy10478 171 AVTATATPVVI---DDICT-SLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEK 246 (451)
Q Consensus 171 ~lSAT~~~~~~---~~i~~-~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~ 246 (451)
++|||+++. . ..+.. .....-. ......+++..... ...+...|..++.. .++++||||+|++.++.
T Consensus 220 l~SAT~t~~-~~~~~~~~~~~~~i~v~---~~~~~~~~i~~~~~--~~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~ 290 (1054)
T 1gku_B 220 LMVSTATAK-KGKKAELFRQLLNFDIG---SSRITVRNVEDVAV--NDESISTLSSILEK---LGTGGIIYARTGEEAEE 290 (1054)
T ss_dssp EEECCCCSC-CCTTHHHHHHHHCCCCS---CCEECCCCEEEEEE--SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHH
T ss_pred EEEecCCCc-hhHHHHHhhcceEEEcc---CcccCcCCceEEEe--chhHHHHHHHHHhh---cCCCEEEEEcCHHHHHH
Confidence 999999876 2 11221 1111100 00112233333332 23344556666654 36789999999999999
Q ss_pred HHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEE----ccccccccccCCc-cEEEEeCCC------------
Q psy10478 247 VCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVA----TCAFGMGIDKPDV-RCVIHYGAP------------ 309 (451)
Q Consensus 247 l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVa----T~~~~~GiD~p~v-~~VI~~~~p------------ 309 (451)
+++.|.+. +.+..+||++ ..+++.|++|+.+|||| |+++++|||+|+| ++||++|+|
T Consensus 291 l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~ 364 (1054)
T 1gku_B 291 IYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSL 364 (1054)
T ss_dssp HHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGS
T ss_pred HHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccC
Confidence 99999988 9999999998 47889999999999999 9999999999995 999999999
Q ss_pred -----------------------------------------------------------CCHHHHHHHhcccCCCCCCc-
Q psy10478 310 -----------------------------------------------------------KDLSAYYQEIGRAGRDGLSS- 329 (451)
Q Consensus 310 -----------------------------------------------------------~s~~~y~Qr~GRagR~g~~g- 329 (451)
.+..+|+||+|||||.|..|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~ 444 (1054)
T 1gku_B 365 SPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGL 444 (1054)
T ss_dssp CHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEE
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCC
Confidence 79999999999999987665
Q ss_pred -EEEEEeecccHHHH
Q psy10478 330 -VCYTFYKTADFTKN 343 (451)
Q Consensus 330 -~~i~l~~~~d~~~~ 343 (451)
.++.++...|...+
T Consensus 445 ~~g~~~~~~~d~~~~ 459 (1054)
T 1gku_B 445 TKGASFLLEDDSELL 459 (1054)
T ss_dssp CCEEEEEECSCHHHH
T ss_pred ceEEEEEEecCHHHH
Confidence 36666666555443
No 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=1.4e-28 Score=263.94 Aligned_cols=239 Identities=19% Similarity=0.209 Sum_probs=177.9
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR 115 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~ 115 (451)
++.++.++|+.+..++...++.+.+|..+|+|+||+.+....
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~-------------------------------------- 486 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV-------------------------------------- 486 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC--------------------------------------
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh--------------------------------------
Confidence 355778889988888888888889999999999998663211
Q ss_pred cCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCCCCCeE
Q psy10478 116 LPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNI 195 (451)
Q Consensus 116 ~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l~~~~~ 195 (451)
.+.++++|||||+|++ |...+ ..++....+.++++||||+.+.... ....+..+..+
T Consensus 487 ------------~~~~l~lVVIDEaHr~---g~~qr------~~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~ 543 (780)
T 1gm5_A 487 ------------HFKNLGLVIIDEQHRF---GVKQR------EALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTV 543 (780)
T ss_dssp ------------CCSCCCEEEEESCCCC--------------CCCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEE
T ss_pred ------------hccCCceEEecccchh---hHHHH------HHHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceee
Confidence 1247999999999986 32211 1233444578999999999887655 22333223333
Q ss_pred Eec-CCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCCh--------hHHHHHHHHHHH---CCCCeeeecC
Q psy10478 196 INT-GFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTK--------VICEKVCDVLSR---NGIQNRPYHA 263 (451)
Q Consensus 196 ~~~-~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~--------~~~~~l~~~L~~---~~~~v~~~h~ 263 (451)
+.. +..+.++...+.. ......+...+......+++++|||+++ ..++.+++.|.+ .++.+..+||
T Consensus 544 i~~~p~~r~~i~~~~~~--~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG 621 (780)
T 1gm5_A 544 IDEMPPGRKEVQTMLVP--MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHG 621 (780)
T ss_dssp ECCCCSSCCCCEECCCC--SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCS
T ss_pred eeccCCCCcceEEEEec--cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeC
Confidence 322 2333334332222 2233445555554445788999999976 457888888887 4788999999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCcEEEEEeec
Q psy10478 264 HISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK-DLSAYYQEIGRAGRDGLSSVCYTFYKT 337 (451)
Q Consensus 264 ~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~l~~~ 337 (451)
+|++++|..+++.|++|+++|||||+++++|+|+|++++||+++.|. +.+.|.||+||+||.|.+|.|++++++
T Consensus 622 ~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 622 RLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp SSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999996 789999999999999999999999874
No 41
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=9.8e-29 Score=250.72 Aligned_cols=256 Identities=13% Similarity=0.081 Sum_probs=167.9
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSE 113 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 113 (451)
++.++.+-++||+|......+++.+...+.+++|++|.+.+..+ ....+....+- . .-+ ...
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q-~~~~~~~~~v~-----~---~~~-~~~-------- 64 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASE-MYEALRGEPIR-----Y---MTP-AVQ-------- 64 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHH-HHHHTTTSCEE-----E---C--------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHH-HHHHhCCCeEE-----E---Eec-Ccc--------
Confidence 45667888999999886555554444455799999999998776 55555433110 0 000 000
Q ss_pred cccCCCCchhhhc------------cccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHH
Q psy10478 114 LRLPLPDVPILFL------------SRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVI 181 (451)
Q Consensus 114 l~~~~~~~~~~~l------------~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~ 181 (451)
...+|+..+..+ ..+.++++|||||+|++..+ +......+..+. ..++.++++||||+++...
T Consensus 65 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~~ 139 (431)
T 2v6i_A 65 -SERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGTTE 139 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTCCC
T ss_pred -ccCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcchh
Confidence 012222222111 12578999999999997321 223333333322 2357999999999987431
Q ss_pred HHHHHhcCCCCCeEEecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeee
Q psy10478 182 DDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPY 261 (451)
Q Consensus 182 ~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~ 261 (451)
. +... ++.+..............+...+.. .++++||||++++.++.+++.|.+.++.+..+
T Consensus 140 ~-----~~~~----------~~~i~~~~~~~~~~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~l 201 (431)
T 2v6i_A 140 A-----FPPS----------NSPIIDEETRIPDKAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYL 201 (431)
T ss_dssp S-----SCCC----------SSCCEEEECCCCSSCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred h-----hcCC----------CCceeeccccCCHHHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEe
Confidence 1 1111 1111111000011111122233333 46789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccE-----------------EEEeCCCCCHHHHHHHhcccCC
Q psy10478 262 HAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC-----------------VIHYGAPKDLSAYYQEIGRAGR 324 (451)
Q Consensus 262 h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~-----------------VI~~~~p~s~~~y~Qr~GRagR 324 (451)
||+ +|.++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+.++|+||+||+||
T Consensus 202 hg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR 276 (431)
T 2v6i_A 202 NRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR 276 (431)
T ss_dssp STT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred CCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCC
Confidence 997 588899999999999999999999999999 654 6788999999999999999999
Q ss_pred CCCCc-EEEEEe
Q psy10478 325 DGLSS-VCYTFY 335 (451)
Q Consensus 325 ~g~~g-~~i~l~ 335 (451)
.|..+ .++++.
T Consensus 277 ~g~~~~~~~~~~ 288 (431)
T 2v6i_A 277 NPEKLGDIYAYS 288 (431)
T ss_dssp CTTCCCCEEEEC
T ss_pred CCCCCCeEEEEc
Confidence 99644 444444
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=1.2e-27 Score=275.39 Aligned_cols=309 Identities=15% Similarity=0.167 Sum_probs=209.1
Q ss_pred hhcccchhhhhhcCCCChhhhcCcCcccc----------CCCeeEEEeCccccccchhhH---hhhhhhhhhhcccceec
Q psy10478 31 TCRRKYLLNHFKGSSVTMAESQVPPDKCC----------DNCRQVVYMTPEYVTNNTSFL---SRIPRIVLIAIDEAHCV 97 (451)
Q Consensus 31 ~~~~~~i~a~~~~s~~~~~e~~~~~~~~~----------~~~~~vl~~tPe~l~~~~~~~---~~l~~~~~~~~de~~~~ 97 (451)
....+.+++|-++||+|......+++.+. ..+.++||++|.+.+.++... +.+..+++ .+.+.++.
T Consensus 93 ~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi-~V~~~tGd 171 (1724)
T 4f92_B 93 ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGI-TVAELTGD 171 (1724)
T ss_dssp TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTC-CEEECCSS
T ss_pred cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCC-EEEEEECC
Confidence 34567888999999999765444443332 346799999999999877333 23333221 11111111
Q ss_pred cccCCCCcchhhcccccccCCCCchhhhccc------cCcccEEEEccccccccCCCCcHHHHHH-HHHh----hccCCC
Q psy10478 98 SQWGHDFRPSYRCLSELRLPLPDVPILFLSR------IPRIVLIAIDEAHCVSQWGHDFRPSYRC-LSEL----RLPLPD 166 (451)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~------l~~l~~vViDEah~~~~~g~~fr~~~~~-l~~l----~~~~~~ 166 (451)
.........-.++.+.||+.+...+.. ++++++|||||+|.+.+ . .-+.+.. +.++ ....++
T Consensus 172 ----~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~--RG~~lE~~l~rl~~~~~~~~~~ 244 (1724)
T 4f92_B 172 ----HQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-D--RGPVLEALVARAIRNIEMTQED 244 (1724)
T ss_dssp ----CSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-T--THHHHHHHHHHHHHHHHHHTCC
T ss_pred ----CCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-c--cHHHHHHHHHHHHHHHHhCCCC
Confidence 111222234467889999987655432 56799999999998854 2 1122222 1111 223467
Q ss_pred CCEEEEEeeCChHHHHHHHHhcCCCCC--eEEecCCCCC-ceEEEE---Eecc-hhHHHH----HHHHHhhccCCCCcEE
Q psy10478 167 VPILAVTATATPVVIDDICTSLMLRDP--NIINTGFDRP-NLYLAA---SVKQ-DDIMAD----LRKLTNFENQFEGSTI 235 (451)
Q Consensus 167 ~~~v~lSAT~~~~~~~~i~~~l~l~~~--~~~~~~~~~~-~l~~~~---~~~~-~~~~~~----L~~~l~~~~~~~~~~i 235 (451)
+++|+||||+++. ++++++|+...+ .....+..|| .+...+ .... ...... +...+... ..++++|
T Consensus 245 ~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~L 321 (1724)
T 4f92_B 245 VRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH-AGKNQVL 321 (1724)
T ss_dssp CEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC-CSSCCEE
T ss_pred CcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHH-hcCCcEE
Confidence 8999999999864 478888875432 2222333344 232211 1111 111222 22223222 2567999
Q ss_pred EEcCChhHHHHHHHHHHHC-------------------------------------CCCeeeecCCCCHHHHHHHHHHhh
Q psy10478 236 IYCPTKVICEKVCDVLSRN-------------------------------------GIQNRPYHAHISLKQRKEIHGLFV 278 (451)
Q Consensus 236 VF~~t~~~~~~l~~~L~~~-------------------------------------~~~v~~~h~~l~~~~R~~~~~~f~ 278 (451)
|||+|++.|+.+++.|.+. ..++++|||||+.++|..+++.|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999999999888631 235889999999999999999999
Q ss_pred cCCceEEEEccccccccccCCccEEEE----eC------CCCCHHHHHHHhcccCCCC--CCcEEEEEeecccHHHHhhh
Q psy10478 279 KDLIKVVVATCAFGMGIDKPDVRCVIH----YG------APKDLSAYYQEIGRAGRDG--LSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 279 ~g~~~iLVaT~~~~~GiD~p~v~~VI~----~~------~p~s~~~y~Qr~GRagR~g--~~g~~i~l~~~~d~~~~~~~ 346 (451)
+|.++|||||+++++|||+|.+++||. |+ .|.+..+|.||+|||||.| ..|.++++.++.+...+..+
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 999999999999999999999999985 44 3568999999999999987 46999999999998888877
Q ss_pred hcCC
Q psy10478 347 FQPN 350 (451)
Q Consensus 347 ~~~~ 350 (451)
+...
T Consensus 482 l~~~ 485 (1724)
T 4f92_B 482 LNQQ 485 (1724)
T ss_dssp TTTC
T ss_pred HcCC
Confidence 7665
No 43
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.9e-26 Score=202.64 Aligned_cols=144 Identities=24% Similarity=0.330 Sum_probs=128.2
Q ss_pred CCCceEEEEE-ecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc
Q psy10478 201 DRPNLYLAAS-VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK 279 (451)
Q Consensus 201 ~~~~l~~~~~-~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~ 279 (451)
..+++...+. .....+...|..++... .++++||||+++..++.+++.|.+.|+.+..+||+|++.+|..+++.|++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3444443333 33467888888888775 67899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhh
Q psy10478 280 DLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 280 g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
|+.+|||||+++++|+|+|++++||++|+|.+..+|.||+||+||.|++|.+++|+.+.+...++.+
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i 150 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADI 150 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHH
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998877665543
No 44
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=1.6e-27 Score=266.87 Aligned_cols=287 Identities=15% Similarity=0.117 Sum_probs=197.4
Q ss_pred cchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhh-hhhhcccceeccccC-CC----Ccchh
Q psy10478 35 KYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRI-VLIAIDEAHCVSQWG-HD----FRPSY 108 (451)
Q Consensus 35 ~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~-~~~~~de~~~~~~~~-~~----~~~~~ 108 (451)
+.++.+-+|+|+|......+...+..| .+++|++|.+.+..+ +...+... .-..+.-..+....+ .. +....
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g-~~vlvlvPt~~La~Q-~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~ 703 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQ-HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 703 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTT-CEEEEECSSHHHHHH-HHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhC-CeEEEEechHHHHHH-HHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 678889999999976544444444444 599999999988766 55444322 000000001000000 00 11111
Q ss_pred hcccccccCCCCchhhhccccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhc
Q psy10478 109 RCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSL 188 (451)
Q Consensus 109 ~~~~~l~~~~~~~~~~~l~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l 188 (451)
....+++++||..... .-.+.++++|||||+|++ |... ...+..+ .++.++++||||+.+...... ..
T Consensus 704 ~g~~dIvV~T~~ll~~-~~~~~~l~lvIiDEaH~~---g~~~---~~~l~~l---~~~~~vl~lSATp~p~~l~~~--~~ 771 (1151)
T 2eyq_A 704 EGKIDILIGTHKLLQS-DVKFKDLGLLIVDEEHRF---GVRH---KERIKAM---RANVDILTLTATPIPRTLNMA--MS 771 (1151)
T ss_dssp TTCCSEEEECTHHHHS-CCCCSSEEEEEEESGGGS---CHHH---HHHHHHH---HTTSEEEEEESSCCCHHHHHH--HT
T ss_pred cCCCCEEEECHHHHhC-CccccccceEEEechHhc---ChHH---HHHHHHh---cCCCCEEEEcCCCChhhHHHH--Hh
Confidence 2236678888754422 223578999999999995 4222 2223222 356889999999988876633 33
Q ss_pred CCCCCeEEecC-CCCCceEEEEEecch-hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC--CCCeeeecCC
Q psy10478 189 MLRDPNIINTG-FDRPNLYLAASVKQD-DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN--GIQNRPYHAH 264 (451)
Q Consensus 189 ~l~~~~~~~~~-~~~~~l~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~--~~~v~~~h~~ 264 (451)
++.++.++..+ ..+..+...+..... .....+... ...+++++|||++++.++.+++.|++. +..+..+||+
T Consensus 772 ~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~----l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~ 847 (1151)
T 2eyq_A 772 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILRE----ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 847 (1151)
T ss_dssp TTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHH----HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSS
T ss_pred cCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHH----HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 44444444332 223334433333222 222222222 236789999999999999999999987 7899999999
Q ss_pred CCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCC-CCCHHHHHHHhcccCCCCCCcEEEEEeeccc
Q psy10478 265 ISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA-PKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339 (451)
Q Consensus 265 l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~-p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 339 (451)
|+..+|.++++.|.+|+.+|||||+++++|+|+|++++||+++. +.+..+|+||+||+||.|+.|.|++++.+.+
T Consensus 848 ~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 848 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp CCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999999999999999999999999999999999998 4699999999999999999999999987653
No 45
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=8.2e-28 Score=259.35 Aligned_cols=302 Identities=18% Similarity=0.178 Sum_probs=196.3
Q ss_pred HHHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcc-ccC-CCeeEEEeCccccccchhhHhhhhh-hhhhhcccceecc
Q psy10478 22 RVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDK-CCD-NCRQVVYMTPEYVTNNTSFLSRIPR-IVLIAIDEAHCVS 98 (451)
Q Consensus 22 q~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~-~~~-~~~~vl~~tPe~l~~~~~~~~~l~~-~~~~~~de~~~~~ 98 (451)
|...+......+...++.+-+|||+|..--...... ... ++.+++|+.|.+.+..+ ....+.. ++.. +......
T Consensus 98 q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q-~~~~l~~~~~~~-v~~~vG~- 174 (773)
T 2xau_A 98 QRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMS-VAQRVAEEMDVK-LGEEVGY- 174 (773)
T ss_dssp GHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHH-HHHHHHHHTTCC-BTTTEEE-
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHH-HHHHHHHHhCCc-hhheecc-
Confidence 444555555555667788889999887211111111 112 14579999999887654 3332221 1110 1111110
Q ss_pred ccCCCCcchhhcccccccCCCCchhhhc---cccCcccEEEEccccc-cccCCCCcHHHHHHHHHhhccCCCCCEEEEEe
Q psy10478 99 QWGHDFRPSYRCLSELRLPLPDVPILFL---SRIPRIVLIAIDEAHC-VSQWGHDFRPSYRCLSELRLPLPDVPILAVTA 174 (451)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l---~~l~~l~~vViDEah~-~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSA 174 (451)
...+......-..+...||+.....+ ..+.++++|||||+|. .++. ...+..+..+....++.++++|||
T Consensus 175 --~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~----d~~~~~l~~l~~~~~~~~iIl~SA 248 (773)
T 2xau_A 175 --SIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLAT----DILMGLLKQVVKRRPDLKIIIMSA 248 (773)
T ss_dssp --EETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHH----HHHHHHHHHHHHHCTTCEEEEEES
T ss_pred --eeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccch----HHHHHHHHHHHHhCCCceEEEEec
Confidence 00111111223456667777665433 2367899999999996 3221 111222333444457899999999
Q ss_pred eCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEEEec-chhH----HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHH
Q psy10478 175 TATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVK-QDDI----MADLRKLTNFENQFEGSTIIYCPTKVICEKVCD 249 (451)
Q Consensus 175 T~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~~~~-~~~~----~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~ 249 (451)
|++.. .+.++++ .+.++.......++....... .... ...+..+.... .++++||||++++.++.+++
T Consensus 249 T~~~~---~l~~~~~--~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~g~iLVF~~~~~~i~~l~~ 321 (773)
T 2xau_A 249 TLDAE---KFQRYFN--DAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATE--EAGDILLFLTGEDEIEDAVR 321 (773)
T ss_dssp CSCCH---HHHHHTT--SCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHS--CSCEEEEECSCHHHHHHHHH
T ss_pred cccHH---HHHHHhc--CCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhc--CCCCEEEECCCHHHHHHHHH
Confidence 99764 3444443 233343332222222222111 1222 22333333322 67899999999999999999
Q ss_pred HHHH-----------CCCCeeeecCCCCHHHHHHHHHHhh-----cCCceEEEEccccccccccCCccEEEEeCC-----
Q psy10478 250 VLSR-----------NGIQNRPYHAHISLKQRKEIHGLFV-----KDLIKVVVATCAFGMGIDKPDVRCVIHYGA----- 308 (451)
Q Consensus 250 ~L~~-----------~~~~v~~~h~~l~~~~R~~~~~~f~-----~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~----- 308 (451)
.|.+ .++.+..+||+|++++|..+++.|. +|..+|||||+++++|||+|+|++||++|+
T Consensus 322 ~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~ 401 (773)
T 2xau_A 322 KISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKV 401 (773)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEE
T ss_pred HHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCcccee
Confidence 9985 5788999999999999999999999 999999999999999999999999999888
Q ss_pred -------------CCCHHHHHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 309 -------------PKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 309 -------------p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
|.|.++|.||+|||||. .+|.|+.+|++.+.
T Consensus 402 yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 402 YNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred eccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 88999999999999999 79999999988776
No 46
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.94 E-value=2.3e-28 Score=253.55 Aligned_cols=291 Identities=11% Similarity=0.033 Sum_probs=189.4
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCC-CCcchhhcc
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGH-DFRPSYRCL 111 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~-~~~~~~~~~ 111 (451)
+.+.++++-+|+|+|......+...+..++.++||++|.+.+..+ +.+.+..+......... ...+. ........-
T Consensus 128 ~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q-~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~ 204 (510)
T 2oca_A 128 NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQ-MADDFVDYRLFSHAMIK--KIGGGASKDDKYKND 204 (510)
T ss_dssp HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHH-HHHHHHHTTSSCGGGEE--ECGGGCCTTGGGCTT
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHH-HHHHHHHhhcCCccceE--EEecCCccccccccC
Confidence 366788999999999887666665555666799999999888766 66666544111100001 00110 010001233
Q ss_pred cccccCCCCchhhhc-cccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHHhcCC
Q psy10478 112 SELRLPLPDVPILFL-SRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190 (451)
Q Consensus 112 ~~l~~~~~~~~~~~l-~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~~l~l 190 (451)
..++++||+...... ..+.++++|||||||++.. +.+..+ +....+..++++||||+++.... +....++
T Consensus 205 ~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~------~~~~~i--l~~~~~~~~~l~lSATp~~~~~~-~~~~~~~ 275 (510)
T 2oca_A 205 APVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG------KSISSI--ISGLNNCMFKFGLSGSLRDGKAN-IMQYVGM 275 (510)
T ss_dssp CSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCH------HHHHHH--GGGCTTCCEEEEEESCGGGCSSC-HHHHHHH
T ss_pred CcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCc------ccHHHH--HHhcccCcEEEEEEeCCCCCccc-HHHhHHh
Confidence 566666766543321 1246799999999999854 334433 23333567899999999665321 1111111
Q ss_pred CCCeEEecCCC--------CCceEEEEE-ecc----------------------hhHHHHHHHHHhhccCC-CCcEEEEc
Q psy10478 191 RDPNIINTGFD--------RPNLYLAAS-VKQ----------------------DDIMADLRKLTNFENQF-EGSTIIYC 238 (451)
Q Consensus 191 ~~~~~~~~~~~--------~~~l~~~~~-~~~----------------------~~~~~~L~~~l~~~~~~-~~~~iVF~ 238 (451)
..+.++..+.. .+....... ... ..+...+..++...... +.++||||
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~ 355 (510)
T 2oca_A 276 FGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFK 355 (510)
T ss_dssp HCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred hCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 12222222111 111111110 000 11122234444333223 44566666
Q ss_pred CChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEc-cccccccccCCccEEEEeCCCCCHHHHHH
Q psy10478 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT-CAFGMGIDKPDVRCVIHYGAPKDLSAYYQ 317 (451)
Q Consensus 239 ~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT-~~~~~GiD~p~v~~VI~~~~p~s~~~y~Q 317 (451)
+ .+.++.+++.|.+.+..+..+||+++..+|.++++.|.+|+.+||||| +++++|+|+|++++||++++|.+...|+|
T Consensus 356 ~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q 434 (510)
T 2oca_A 356 H-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQ 434 (510)
T ss_dssp S-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHH
T ss_pred c-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHH
Confidence 6 899999999999998899999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HhcccCCCCCCcEEEEEee
Q psy10478 318 EIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 318 r~GRagR~g~~g~~i~l~~ 336 (451)
++||+||.|+.+.++++++
T Consensus 435 ~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 435 TIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHTTTCCCCCCEEEE
T ss_pred HHhcccccCCCCceEEEEE
Confidence 9999999998775555555
No 47
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=9e-27 Score=246.22 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=111.6
Q ss_pred chhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc
Q psy10478 213 QDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG 292 (451)
Q Consensus 213 ~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~ 292 (451)
...+...|...+......+.++||||+|+..++.++..|.+.|+++..+||++...+|..+...|+.| .|+|||++++
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg 491 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG 491 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc
Confidence 35677777777765333678999999999999999999999999999999999888887666666655 6999999999
Q ss_pred cccccC--------CccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccH
Q psy10478 293 MGIDKP--------DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 293 ~GiD~p--------~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
||+|++ ++.+||+++.|.|...|.||+||+||.|.+|.++.|++.+|.
T Consensus 492 RG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 492 RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999 788999999999999999999999999999999999998774
No 48
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=6.1e-26 Score=201.79 Aligned_cols=129 Identities=23% Similarity=0.368 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~ 293 (451)
..+...|..++... .++++||||+++..++.++..|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 19 ~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 19 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCT
T ss_pred HhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhc
Confidence 34888888888765 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCC------CCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHh
Q psy10478 294 GIDKPDVRCVIHYGAP------KDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNN 344 (451)
Q Consensus 294 GiD~p~v~~VI~~~~p------~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~ 344 (451)
|+|+|++++||++|+| .+..+|+||+||+||.|+.|.+++++++.+...+.
T Consensus 97 Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 153 (175)
T 2rb4_A 97 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLM 153 (175)
T ss_dssp TTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHH
T ss_pred CCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHH
Confidence 9999999999999999 99999999999999999999999999988765544
No 49
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=6.9e-26 Score=207.74 Aligned_cols=133 Identities=25% Similarity=0.386 Sum_probs=122.4
Q ss_pred cchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc
Q psy10478 212 KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAF 291 (451)
Q Consensus 212 ~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~ 291 (451)
....+...|..++... .++++||||+++..++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 14 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 91 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91 (212)
T ss_dssp CTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTT
T ss_pred CHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChh
Confidence 3467888888888765 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhh
Q psy10478 292 GMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 292 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
++|+|+|++++||++|+|.+..+|+||+||+||.|++|.+++++++.+...++.+
T Consensus 92 ~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i 146 (212)
T 3eaq_A 92 ARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 146 (212)
T ss_dssp TCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHH
T ss_pred hcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887666544
No 50
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=7.7e-26 Score=200.51 Aligned_cols=127 Identities=22% Similarity=0.348 Sum_probs=119.4
Q ss_pred ecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q psy10478 211 VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290 (451)
Q Consensus 211 ~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~ 290 (451)
.....+...|..+++.. .++++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 13 ~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 90 (172)
T 1t5i_A 13 LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 90 (172)
T ss_dssp CCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC
T ss_pred CChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc
Confidence 34467888888888865 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeeccc
Q psy10478 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339 (451)
Q Consensus 291 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d 339 (451)
+++|+|+|++++||++|+|.+...|+||+||+||.|+.|.+++|+++.+
T Consensus 91 ~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 91 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred hhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 9999999999999999999999999999999999999999999998753
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.94 E-value=2.5e-27 Score=248.16 Aligned_cols=268 Identities=18% Similarity=0.158 Sum_probs=179.9
Q ss_pred hhhhhcccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcch
Q psy10478 28 ELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPS 107 (451)
Q Consensus 28 ~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~ 107 (451)
+....+++.+..+-++||+|..-...+.+ ...+++|++|.+.+..+ ..+.+.... . .......|.. .
T Consensus 227 ~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----~g~~vLVl~PTReLA~Q-ia~~l~~~~--g---~~vg~~vG~~---~ 293 (666)
T 3o8b_A 227 AVPQSFQVAHLHAPTGSGKSTKVPAAYAA----QGYKVLVLNPSVAATLG-FGAYMSKAH--G---IDPNIRTGVR---T 293 (666)
T ss_dssp CCCSSCEEEEEECCTTSCTTTHHHHHHHH----TTCCEEEEESCHHHHHH-HHHHHHHHH--S---CCCEEECSSC---E
T ss_pred HHHHcCCeEEEEeCCchhHHHHHHHHHHH----CCCeEEEEcchHHHHHH-HHHHHHHHh--C---CCeeEEECcE---e
Confidence 33344566777888999999765433332 34589999999988766 444333220 0 0111111211 1
Q ss_pred hhcccccccCCCCchhhhc-cccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHHHH
Q psy10478 108 YRCLSELRLPLPDVPILFL-SRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICT 186 (451)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~l-~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i~~ 186 (451)
...-.++++.||++++... -.+.++++|||||||++.. +|...+..+.......+...++++|||+++..
T Consensus 294 ~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i------ 364 (666)
T 3o8b_A 294 ITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDS---TTILGIGTVLDQAETAGARLVVLATATPPGSV------ 364 (666)
T ss_dssp ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSH---HHHHHHHHHHHHTTTTTCSEEEEEESSCTTCC------
T ss_pred ccCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCc---cHHHHHHHHHHhhhhcCCceEEEECCCCCccc------
Confidence 2334577788888864321 1245799999999987642 36777766655544333444788899998732
Q ss_pred hcCCCCCeEE--ecCCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCC
Q psy10478 187 SLMLRDPNII--NTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAH 264 (451)
Q Consensus 187 ~l~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~ 264 (451)
....+... ....... +.+. ..... +.. ..++++||||+|++.++.+++.|++.++.+..+||+
T Consensus 365 --~~~~p~i~~v~~~~~~~-i~~~----~~~~~------l~~--~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~ 429 (666)
T 3o8b_A 365 --TVPHPNIEEVALSNTGE-IPFY----GKAIP------IEA--IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRG 429 (666)
T ss_dssp --CCCCTTEEEEECBSCSS-EEET----TEEEC------GGG--SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred --ccCCcceEEEeecccch-hHHH----Hhhhh------hhh--ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCC
Confidence 12222221 1111111 1110 00000 111 267899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEE----------EeC-----------CCCCHHHHHHHhcccC
Q psy10478 265 ISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI----------HYG-----------APKDLSAYYQEIGRAG 323 (451)
Q Consensus 265 l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI----------~~~-----------~p~s~~~y~Qr~GRag 323 (451)
|++++ |.++..+|||||+++++|||+| +++|| ||| .|.+.++|+||+||+|
T Consensus 430 l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtG 501 (666)
T 3o8b_A 430 LDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTG 501 (666)
T ss_dssp SCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBC
T ss_pred CCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCC
Confidence 99765 4566679999999999999997 99998 566 8999999999999999
Q ss_pred CCCCCcEEEEEeecccHHH
Q psy10478 324 RDGLSSVCYTFYKTADFTK 342 (451)
Q Consensus 324 R~g~~g~~i~l~~~~d~~~ 342 (451)
| |++|. +.|+++.+...
T Consensus 502 R-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 502 R-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp S-SSCEE-EEESCCCCBCS
T ss_pred C-CCCCE-EEEEecchhhc
Confidence 9 88999 99998876543
No 52
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=8.7e-26 Score=198.78 Aligned_cols=129 Identities=22% Similarity=0.339 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~ 293 (451)
..+...|.+++... .++++||||+++..++.++..|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 15 ~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 15 EYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 92 (165)
T ss_dssp GGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT
T ss_pred hhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhc
Confidence 34888888888875 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHh
Q psy10478 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNN 344 (451)
Q Consensus 294 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~ 344 (451)
|+|+|++++||++|+|.+..+|.||+||+||.|++|.+++++++.+...+.
T Consensus 93 G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 143 (165)
T 1fuk_A 93 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMR 143 (165)
T ss_dssp TCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHH
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHH
Confidence 999999999999999999999999999999999999999999988766554
No 53
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=201.06 Aligned_cols=144 Identities=24% Similarity=0.354 Sum_probs=113.5
Q ss_pred CCceEEEEEe-cchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC
Q psy10478 202 RPNLYLAASV-KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280 (451)
Q Consensus 202 ~~~l~~~~~~-~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g 280 (451)
.+++...+.. ....+...|.+++.... .++++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|
T Consensus 17 ~~~i~q~~~~v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 3445433332 34677888888887643 578999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhh
Q psy10478 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 281 ~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
+.+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|++|.+++|+++.+...++.+
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l 161 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 161 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887665543
No 54
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=200.82 Aligned_cols=124 Identities=24% Similarity=0.383 Sum_probs=113.8
Q ss_pred cchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc
Q psy10478 212 KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAF 291 (451)
Q Consensus 212 ~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~ 291 (451)
....+...|.+++.. .++++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 38 ~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~ 114 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 114 (191)
T ss_dssp CGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHH
T ss_pred ChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCch
Confidence 346778888888875 45689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecc
Q psy10478 292 GMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTA 338 (451)
Q Consensus 292 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~ 338 (451)
++|+|+|++++||+||+|.+..+|+||+||+||.|++|.+++|+++.
T Consensus 115 ~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 115 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp HTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99999999999999999999999999999999999999999999875
No 55
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.93 E-value=4.5e-27 Score=241.53 Aligned_cols=268 Identities=16% Similarity=0.184 Sum_probs=183.0
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSE 113 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~ 113 (451)
.+.++++.+++|+|......+... +.++||++|.+.+..+ |...+..++.-.+.. ++.... ....
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q-~~~~~~~~~~~~v~~------~~g~~~----~~~~ 173 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQ-WKERLGIFGEEYVGE------FSGRIK----ELKP 173 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHH-HHHHGGGGCGGGEEE------BSSSCB----CCCS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHH-HHHHHHhCCCcceEE------ECCCcC----CcCC
Confidence 457888999999998754444332 4589999999887766 777666642210111 111111 1246
Q ss_pred cccCCCCchhhhcccc-CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH------------
Q psy10478 114 LRLPLPDVPILFLSRI-PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV------------ 180 (451)
Q Consensus 114 l~~~~~~~~~~~l~~l-~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~------------ 180 (451)
++++|++........+ .++++|||||||.+...+ |+. + ...++..+++++|||+....
T Consensus 174 Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~--~~~----~---~~~~~~~~~l~lSATp~~~~~~~~~l~~~~~~ 244 (472)
T 2fwr_A 174 LTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAES--YVQ----I---AQMSIAPFRLGLTATFEREDGRHEILKEVVGG 244 (472)
T ss_dssp EEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTT--THH----H---HHTCCCSEEEEEESCCCCTTSGGGSHHHHTCC
T ss_pred EEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChH--HHH----H---HHhcCCCeEEEEecCccCCCCHHHHHHHHhCC
Confidence 7777777766555433 359999999999998754 443 2 23346778999999997321
Q ss_pred ------HHHHHHhcCCCCCeE--EecCCCC-------------------CceE------EE-------------------
Q psy10478 181 ------IDDICTSLMLRDPNI--INTGFDR-------------------PNLY------LA------------------- 208 (451)
Q Consensus 181 ------~~~i~~~l~l~~~~~--~~~~~~~-------------------~~l~------~~------------------- 208 (451)
..++... .+.++.. +...... .++. +.
T Consensus 245 ~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (472)
T 2fwr_A 245 KVFELFPDSLAGK-HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAW 323 (472)
T ss_dssp EEEECCHHHHTSC-CCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHH
T ss_pred eEeecCHHHHhcC-cCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHH
Confidence 1111110 1111111 1000000 0000 00
Q ss_pred -----EEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCce
Q psy10478 209 -----ASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIK 283 (451)
Q Consensus 209 -----~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~ 283 (451)
.......+...+.+++... .+.++||||++++.++.+++.|. +..+||+++..+|.++++.|++|+.+
T Consensus 324 ~~~~~~~~~~~~k~~~l~~~l~~~--~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~ 396 (472)
T 2fwr_A 324 EEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR 396 (472)
T ss_dssp HHHHHHHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS
T ss_pred HHHHHHhhcChHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC
Confidence 0000123456677777664 78999999999999999999884 67899999999999999999999999
Q ss_pred EEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCC-cEEEE
Q psy10478 284 VVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLS-SVCYT 333 (451)
Q Consensus 284 iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~-g~~i~ 333 (451)
|||||+++++|+|+|++++||+++.|.++..|.|++||+||.|+. +.+++
T Consensus 397 vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 397 AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEE
T ss_pred EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEE
Confidence 999999999999999999999999999999999999999999954 34443
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.93 E-value=3.8e-25 Score=233.98 Aligned_cols=273 Identities=16% Similarity=0.154 Sum_probs=179.2
Q ss_pred cccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhccc
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLS 112 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~ 112 (451)
++..++.+-+|||+|.. ++..+...+ +.+|++|.+.+..+ ..+.+...+. .+...-|..
T Consensus 155 rk~vlv~apTGSGKT~~----al~~l~~~~-~gl~l~PtR~LA~Q-i~~~l~~~g~------~v~lltG~~--------- 213 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYH----AIQKYFSAK-SGVYCGPLKLLAHE-IFEKSNAAGV------PCDLVTGEE--------- 213 (677)
T ss_dssp CEEEEEECCTTSSHHHH----HHHHHHHSS-SEEEEESSHHHHHH-HHHHHHHTTC------CEEEECSSC---------
T ss_pred CCEEEEEcCCCCCHHHH----HHHHHHhcC-CeEEEeCHHHHHHH-HHHHHHhcCC------cEEEEECCe---------
Confidence 34567788899999973 222222222 34899999999877 5555544311 111111111
Q ss_pred ccccCCCCchhhhc-------cccCcccEEEEccccccccCCCCcHHHHHHHHHhhccC-CCCCEEEEEeeCChHHHHHH
Q psy10478 113 ELRLPLPDVPILFL-------SRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL-PDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 113 ~l~~~~~~~~~~~l-------~~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~-~~~~~v~lSAT~~~~~~~~i 184 (451)
.....+|++....+ .....++++||||||++.+.+ |...+..+. .... ++.+++++|||. .....+
T Consensus 214 ~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~--~g~~~~~~l--~~l~~~~i~il~~SAT~--~~i~~l 287 (677)
T 3rc3_A 214 RVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA--RGWAWTRAL--LGLCAEEVHLCGEPAAI--DLVMEL 287 (677)
T ss_dssp EECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTT--THHHHHHHH--HHCCEEEEEEEECGGGH--HHHHHH
T ss_pred eEEecCCCcccceeEecHhHhhhcccCCEEEEecceecCCcc--chHHHHHHH--HccCccceEEEeccchH--HHHHHH
Confidence 11223333222211 123568999999999998765 666665442 2222 467788889884 334445
Q ss_pred HHhcCCCCCeEEecCCCCC-ceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecC
Q psy10478 185 CTSLMLRDPNIINTGFDRP-NLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHA 263 (451)
Q Consensus 185 ~~~l~l~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~ 263 (451)
....+ ....+.. ..++ .+.+. . ..+ ..+.. .....+|||+|++.++.+++.|.+.++.+..+||
T Consensus 288 ~~~~~--~~~~v~~-~~r~~~l~~~----~-~~l----~~l~~---~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG 352 (677)
T 3rc3_A 288 MYTTG--EEVEVRD-YKRLTPISVL----D-HAL----ESLDN---LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYG 352 (677)
T ss_dssp HHHHT--CCEEEEE-CCCSSCEEEC----S-SCC----CSGGG---CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECT
T ss_pred HHhcC--CceEEEE-eeecchHHHH----H-HHH----HHHHh---cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeec
Confidence 54442 2222211 1121 11111 0 100 01111 2345699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhc--CCceEEEEccccccccccCCccEEEEeCC--------------CCCHHHHHHHhcccCCCCC
Q psy10478 264 HISLKQRKEIHGLFVK--DLIKVVVATCAFGMGIDKPDVRCVIHYGA--------------PKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 264 ~l~~~~R~~~~~~f~~--g~~~iLVaT~~~~~GiD~p~v~~VI~~~~--------------p~s~~~y~Qr~GRagR~g~ 327 (451)
+|++++|.++++.|++ |+.+|||||+++++|||+ ++++||++|. |.+.++|+||+|||||.|.
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSS 431 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTS
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCC
Confidence 9999999999999999 889999999999999999 8999999999 7799999999999999996
Q ss_pred C---cEEEEEeecccHHHHhhhhcC
Q psy10478 328 S---SVCYTFYKTADFTKNNMIFQP 349 (451)
Q Consensus 328 ~---g~~i~l~~~~d~~~~~~~~~~ 349 (451)
. |.|+.++ +++...++.++..
T Consensus 432 ~g~~G~v~~l~-~~d~~~~~~~~~~ 455 (677)
T 3rc3_A 432 RFKEGEVTTMN-HEDLSLLKEILKR 455 (677)
T ss_dssp SCSSEEEEESS-TTHHHHHHHHHHS
T ss_pred CCCCEEEEEEe-cchHHHHHHHHhc
Confidence 4 6666654 4455555555444
No 57
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.92 E-value=5.5e-25 Score=232.03 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~ 293 (451)
..+...+...+......+.++||||+|+..++.+++.|.+.|+++..+||++...++..+.++|+.| .|+|||++++|
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgR 501 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGR 501 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccC
Confidence 5677888887765444788999999999999999999999999999999999888888888889888 69999999999
Q ss_pred ccccCCc-------------------------------------cEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEee
Q psy10478 294 GIDKPDV-------------------------------------RCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336 (451)
Q Consensus 294 GiD~p~v-------------------------------------~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~ 336 (451)
|+|++.. .+||+++.|.|...|.||+||+||.|.+|.++.|++
T Consensus 502 GtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls 581 (853)
T 2fsf_A 502 GTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLS 581 (853)
T ss_dssp CSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEec
Confidence 9999873 599999999999999999999999999999999999
Q ss_pred cccH
Q psy10478 337 TADF 340 (451)
Q Consensus 337 ~~d~ 340 (451)
.+|.
T Consensus 582 ~eD~ 585 (853)
T 2fsf_A 582 MEDA 585 (853)
T ss_dssp TTSG
T ss_pred ccHH
Confidence 8773
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.92 E-value=2e-24 Score=229.62 Aligned_cols=215 Identities=19% Similarity=0.240 Sum_probs=157.4
Q ss_pred CCCCchhhhccccCcccEEEEccccccc-cCCCCcHHHHHHHHHhhcc---C----------------CCCCEEEEEeeC
Q psy10478 117 PLPDVPILFLSRIPRIVLIAIDEAHCVS-QWGHDFRPSYRCLSELRLP---L----------------PDVPILAVTATA 176 (451)
Q Consensus 117 ~~~~~~~~~l~~l~~l~~vViDEah~~~-~~g~~fr~~~~~l~~l~~~---~----------------~~~~~v~lSAT~ 176 (451)
++|++++..+. +-.+|||||+|++. +|+..|+..+..+..+... + ...+++++|||+
T Consensus 314 ~tp~~LlDyl~---~~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~ 390 (664)
T 1c4o_A 314 EPPYTLLDYFP---EDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATP 390 (664)
T ss_dssp SCCCCGGGGSC---TTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSC
T ss_pred CCchHHHHHHh---hccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCC
Confidence 45676665554 46699999999865 5554455444333222111 0 246789999999
Q ss_pred ChHHHHHHHHhcCCCCCeEEec-----CCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHH
Q psy10478 177 TPVVIDDICTSLMLRDPNIINT-----GFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVL 251 (451)
Q Consensus 177 ~~~~~~~i~~~l~l~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L 251 (451)
++..... . ..++.. +...|. +.+... ......+...+......+.++||||+|+..++.+++.|
T Consensus 391 ~~~~~~~-~-------~~~~~~~~r~~~l~~p~--i~v~~~-~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L 459 (664)
T 1c4o_A 391 GPFELAH-S-------GRVVEQIIRPTGLLDPL--VRVKPT-ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFL 459 (664)
T ss_dssp CHHHHHH-C-------SEEEEECSCTTCCCCCE--EEEECS-TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHh-h-------hCeeeeeeccCCCCCCe--EEEecc-cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHH
Confidence 8754321 0 111111 111222 222222 23344444444443336789999999999999999999
Q ss_pred HHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCC-----CCCHHHHHHHhcccCCCC
Q psy10478 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA-----PKDLSAYYQEIGRAGRDG 326 (451)
Q Consensus 252 ~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~-----p~s~~~y~Qr~GRagR~g 326 (451)
.+.|+.+..+||++++.+|.++++.|++|+++|||||+++++|+|+|++++||+++. |.|..+|+||+|||||.|
T Consensus 460 ~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 460 VEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp HHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred HhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC
Confidence 999999999999999999999999999999999999999999999999999999997 899999999999999996
Q ss_pred CCcEEEEEeecccHHHHhhh
Q psy10478 327 LSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 327 ~~g~~i~l~~~~d~~~~~~~ 346 (451)
+|.+++++++.+....+.+
T Consensus 540 -~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 540 -RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp -TCEEEEECSSCCHHHHHHH
T ss_pred -CCEEEEEEcCCCHHHHHHH
Confidence 8999999988776554433
No 59
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=8.4e-25 Score=210.19 Aligned_cols=136 Identities=24% Similarity=0.381 Sum_probs=120.7
Q ss_pred EEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEc
Q psy10478 209 ASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT 288 (451)
Q Consensus 209 ~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT 288 (451)
+......+.+.|..++... .++++||||+|+..++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 8 i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT 85 (300)
T 3i32_A 8 VPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT 85 (300)
T ss_dssp EECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC
T ss_pred EECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe
Confidence 3334467888888888776 58999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhh
Q psy10478 289 CAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 289 ~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
+++++|+|+|++++||++|.|.+..+|+||+||+||.|++|.|++|+++.+...++.+
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~i 143 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 143 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHH
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887665543
No 60
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.92 E-value=3.4e-25 Score=233.81 Aligned_cols=275 Identities=13% Similarity=0.071 Sum_probs=160.0
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccC--------CCeeEEEeCccccccchhhH-hhhhhhhhhhcccceeccccCCCC
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCD--------NCRQVVYMTPEYVTNNTSFL-SRIPRIVLIAIDEAHCVSQWGHDF 104 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~--------~~~~vl~~tPe~l~~~~~~~-~~l~~~~~~~~de~~~~~~~~~~~ 104 (451)
...++++.+|+|+|..-...+...+.. +..++||++|.+.+..+ +. +.+..++... . ....
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q-~~~~~~~~~~~~~----~---~~~~-- 268 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDD-PKDKTFTPFGDAR----H---KIEG-- 268 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC------------CCTTTCSSE----E---ECCC--
T ss_pred CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHH-HHHHHHHhcchhh----h---hhhc--
Confidence 445778889999998754433333322 45789999998888766 55 5554431100 0 0000
Q ss_pred cchhhcccccccCCCCchhhhc------cc--cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeC
Q psy10478 105 RPSYRCLSELRLPLPDVPILFL------SR--IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATA 176 (451)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~~l------~~--l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~ 176 (451)
.....-..++++|++...... .. ...+++|||||||++...+ ...+..+ ...+++.++++||||+
T Consensus 269 -~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~---~~~~~~i---l~~~~~~~~l~lTATP 341 (590)
T 3h1t_A 269 -GKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD---NSNWREI---LEYFEPAFQIGMTATP 341 (590)
T ss_dssp ---CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHH---HHHSTTSEEEEEESSC
T ss_pred -cCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc---hHHHHHH---HHhCCcceEEEecccc
Confidence 001112345555555544321 11 2468999999999987542 1223333 3334668899999998
Q ss_pred ChHHHHHHHHhcCC----------------CCCeEEecCCCCC--ceEEE---------------EEecc----------
Q psy10478 177 TPVVIDDICTSLML----------------RDPNIINTGFDRP--NLYLA---------------ASVKQ---------- 213 (451)
Q Consensus 177 ~~~~~~~i~~~l~l----------------~~~~~~~~~~~~~--~l~~~---------------~~~~~---------- 213 (451)
......+....++. .++.+........ ..... .....
T Consensus 342 ~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 421 (590)
T 3h1t_A 342 LREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKAR 421 (590)
T ss_dssp SCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHT
T ss_pred ccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHH
Confidence 76544444444331 1111111110000 00000 00000
Q ss_pred -hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCC--------CeeeecCCCCHHHHHHHHHHhhcCCce-
Q psy10478 214 -DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGI--------QNRPYHAHISLKQRKEIHGLFVKDLIK- 283 (451)
Q Consensus 214 -~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~--------~v~~~h~~l~~~~R~~~~~~f~~g~~~- 283 (451)
....+.+..++... ..++++||||+++++++.+++.|.+.+. .+..+||+++. +|+++++.|++|+.+
T Consensus 422 ~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~ 499 (590)
T 3h1t_A 422 TDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETST 499 (590)
T ss_dssp HHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCC
Confidence 01112233334333 3668999999999999999999987543 26788998764 799999999998866
Q ss_pred --EEEEccccccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCC
Q psy10478 284 --VVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGL 327 (451)
Q Consensus 284 --iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~ 327 (451)
|||+|+++++|+|+|++++||++++|.|...|+||+||+||.|.
T Consensus 500 ~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 500 PVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 88999999999999999999999999999999999999999874
No 61
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=6.4e-24 Score=225.64 Aligned_cols=215 Identities=20% Similarity=0.178 Sum_probs=153.9
Q ss_pred CCCCchhhhccccCcccEEEEccccccc-cCCCCcHHHHHHHHHhhcc-------------------CCCCCEEEEEeeC
Q psy10478 117 PLPDVPILFLSRIPRIVLIAIDEAHCVS-QWGHDFRPSYRCLSELRLP-------------------LPDVPILAVTATA 176 (451)
Q Consensus 117 ~~~~~~~~~l~~l~~l~~vViDEah~~~-~~g~~fr~~~~~l~~l~~~-------------------~~~~~~v~lSAT~ 176 (451)
++|++++..+.. -.++||||+|++. +|+..++........+... ....+++++|||+
T Consensus 320 ~tpg~LlDyl~~---~~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~ 396 (661)
T 2d7d_A 320 STPYTLLDYFPD---DFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATP 396 (661)
T ss_dssp CCCBCGGGGSCS---SCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECSSC
T ss_pred CCccHHHHHccc---CcEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEecCC
Confidence 457777666544 5699999999975 2322222222111111100 0256789999999
Q ss_pred ChHHHHHHHHhcCCCCCeEEec---CCCCCceEEEEEecchhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHH
Q psy10478 177 TPVVIDDICTSLMLRDPNIINT---GFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR 253 (451)
Q Consensus 177 ~~~~~~~i~~~l~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~ 253 (451)
++..... . ........ +...|. +.+... ......+...+......+.++||||+|+..++.+++.|.+
T Consensus 397 ~~~~~~~-~-----~~~~~~~~r~~~l~~p~--i~v~~~-~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~ 467 (661)
T 2d7d_A 397 GPYEIEH-T-----DEMVEQIIRPTGLLDPL--IDVRPI-EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKE 467 (661)
T ss_dssp CHHHHHH-C-----SSCEEECCCTTCCCCCE--EEEECS-TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred ChhHHHh-h-----hCeeeeeecccCCCCCe--EEEecc-cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHh
Confidence 8754321 0 01111100 111222 222222 2334444444444434678999999999999999999999
Q ss_pred CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCC-----CCCHHHHHHHhcccCCCCCC
Q psy10478 254 NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA-----PKDLSAYYQEIGRAGRDGLS 328 (451)
Q Consensus 254 ~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~-----p~s~~~y~Qr~GRagR~g~~ 328 (451)
.|+.+..+||++++.+|.++++.|++|+++|||||+++++|+|+|++++||+++. |.+..+|+||+||+||. ..
T Consensus 468 ~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~ 546 (661)
T 2d7d_A 468 IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AE 546 (661)
T ss_dssp TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TT
T ss_pred cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CC
Confidence 9999999999999999999999999999999999999999999999999999997 99999999999999998 68
Q ss_pred cEEEEEeecccHHHHh
Q psy10478 329 SVCYTFYKTADFTKNN 344 (451)
Q Consensus 329 g~~i~l~~~~d~~~~~ 344 (451)
|.+++|+++.+....+
T Consensus 547 G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 547 GRVIMYADKITKSMEI 562 (661)
T ss_dssp CEEEEECSSCCHHHHH
T ss_pred CEEEEEEeCCCHHHHH
Confidence 9999999887665443
No 62
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.91 E-value=7.4e-24 Score=223.78 Aligned_cols=125 Identities=16% Similarity=0.044 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~ 293 (451)
..+...+...+......+.++||||+|+..++.+++.|.+.|+++..+||++...++..+.+.|+.| .|+|||++++|
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgR 520 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGR 520 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCST
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhc
Confidence 5577777777765444678999999999999999999999999999999999888887788888877 69999999999
Q ss_pred ccccCCc----------------------------------------------------cEEEEeCCCCCHHHHHHHhcc
Q psy10478 294 GIDKPDV----------------------------------------------------RCVIHYGAPKDLSAYYQEIGR 321 (451)
Q Consensus 294 GiD~p~v----------------------------------------------------~~VI~~~~p~s~~~y~Qr~GR 321 (451)
|+|++.+ .+||+++.|.|...|.|++||
T Consensus 521 GtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GR 600 (922)
T 1nkt_A 521 GTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGR 600 (922)
T ss_dssp TCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHT
T ss_pred CccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcc
Confidence 9999975 499999999999999999999
Q ss_pred cCCCCCCcEEEEEeecccH
Q psy10478 322 AGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 322 agR~g~~g~~i~l~~~~d~ 340 (451)
+||.|.+|.++.|++.+|.
T Consensus 601 TGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 601 SGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp SSGGGCCEEEEEEEETTSH
T ss_pred cccCCCCeeEEEEechhHH
Confidence 9999999999999998775
No 63
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=6.6e-26 Score=200.57 Aligned_cols=131 Identities=22% Similarity=0.319 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~ 293 (451)
..+...|..+++.. .++++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 15 ~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 92 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92 (170)
Confidence 45666677777654 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEeecccHHHHhhh
Q psy10478 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346 (451)
Q Consensus 294 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~~~~~~ 346 (451)
|+|+|++++||++|+|.+..+|+||+||+||.|+.|.+++++.+.+...+..+
T Consensus 93 Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 145 (170)
T 2yjt_D 93 GIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKV 145 (170)
Confidence 99999999999999999999999999999999999999999988876655443
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.90 E-value=1.2e-23 Score=232.58 Aligned_cols=119 Identities=16% Similarity=0.195 Sum_probs=109.2
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHH-CCCCeeeecCCCCHHHHHHHHHHhhcCC--ceEEEEcccc
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR-NGIQNRPYHAHISLKQRKEIHGLFVKDL--IKVVVATCAF 291 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~-~~~~v~~~h~~l~~~~R~~~~~~f~~g~--~~iLVaT~~~ 291 (451)
.+...|..++... .+.++||||+++..++.++..|.+ .|+.+..+||+|+..+|..+++.|++|+ ++|||||+++
T Consensus 489 ~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~ 566 (968)
T 3dmq_A 489 PRVEWLMGYLTSH--RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG 566 (968)
T ss_dssp HHHHHHHHHHHHT--SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCT
T ss_pred HHHHHHHHHHHhC--CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchh
Confidence 4566777777763 789999999999999999999995 5999999999999999999999999998 9999999999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEEEe
Q psy10478 292 GMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335 (451)
Q Consensus 292 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~l~ 335 (451)
++|+|+|++++||++|+|.++..|.|++||+||.|+.+.+++++
T Consensus 567 ~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 567 SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp TCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred hcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999888665553
No 65
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.89 E-value=4.3e-23 Score=213.37 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=100.7
Q ss_pred HHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC-CCCeeeecCCCCHHHHHHHHHHhhcC-Cce-EEEEccccccc
Q psy10478 218 ADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN-GIQNRPYHAHISLKQRKEIHGLFVKD-LIK-VVVATCAFGMG 294 (451)
Q Consensus 218 ~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~-~~~v~~~h~~l~~~~R~~~~~~f~~g-~~~-iLVaT~~~~~G 294 (451)
..+.+++......+.++||||+++..++.++..|... |+.+..+||+++..+|.++++.|++| ..+ +|++|+++++|
T Consensus 328 ~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~G 407 (500)
T 1z63_A 328 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFG 407 (500)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CC
T ss_pred HHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCC
Confidence 3344455444447889999999999999999999985 99999999999999999999999998 565 89999999999
Q ss_pred cccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEEEE--Eeecc
Q psy10478 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYT--FYKTA 338 (451)
Q Consensus 295 iD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--l~~~~ 338 (451)
+|+|++++||++|+|.++..|.|++||++|.|+...+.+ ++...
T Consensus 408 lnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 408 INLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999999999998765543 44443
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.87 E-value=2.2e-21 Score=200.97 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=136.3
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEE----EecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAA----SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+.+||+|+..+. +.+.+.+++ .++..+.++|...... ......+...+...+......+.++||||+|+..
T Consensus 411 kL~GMTGTa~te~-~Ef~~iY~l---~vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 411 KLAGMTGTAKTEE-SEFVQVYGM---EVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEK 486 (822)
T ss_dssp EEEEEESSCGGGH-HHHHHHSCC---CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHH
T ss_pred HHeEECCCCchHH-HHHHHHhCC---eEEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHH
Confidence 4789999997654 556666654 3667777777554332 2233567788888777654467899999999999
Q ss_pred HHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccC--------CccEEEEeCCCCCHHHH
Q psy10478 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP--------DVRCVIHYGAPKDLSAY 315 (451)
Q Consensus 244 ~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p--------~v~~VI~~~~p~s~~~y 315 (451)
++.+++.|.+.|+++..+||+....++..+...++.| .|+|||++++||+|++ +..+||+++.|.|...|
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y 564 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRID 564 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHH
Confidence 9999999999999999999996666666666666655 6999999999999998 55699999999999999
Q ss_pred HHHhcccCCCCCCcEEEEEeecccH
Q psy10478 316 YQEIGRAGRDGLSSVCYTFYKTADF 340 (451)
Q Consensus 316 ~Qr~GRagR~g~~g~~i~l~~~~d~ 340 (451)
.||+||+||.|.+|.++.|++.+|.
T Consensus 565 ~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 565 NQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp HHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred HHhhCccccCCCCeeEEEEechhHH
Confidence 9999999999999999999998873
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.2e-20 Score=202.03 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCc---eEEEEccccc
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLI---KVVVATCAFG 292 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~---~iLVaT~~~~ 292 (451)
++..|.+++......+.++||||.....++.+...|...|+.+..+||+++..+|.++++.|+++.. .+|++|.+++
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg 636 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG 636 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc
Confidence 3445556666555578899999999999999999999999999999999999999999999998654 4999999999
Q ss_pred cccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEE--EEEeecc
Q psy10478 293 MGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVC--YTFYKTA 338 (451)
Q Consensus 293 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~l~~~~ 338 (451)
.|+|++.+++||++|+|.++..+.|++||+.|.|+...+ +.|+...
T Consensus 637 ~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 637 LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 999999999999999999999999999999999976544 4445544
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=1.4e-19 Score=192.24 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=97.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCce---EEEEccccccccccCCccEEEEe
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIK---VVVATCAFGMGIDKPDVRCVIHY 306 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~---iLVaT~~~~~GiD~p~v~~VI~~ 306 (451)
.+.++||||+++..++.+...|...|+.+..+||+++..+|.++++.|++|... +|++|.++++|+|++++++||++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 578999999999999999999999999999999999999999999999998764 89999999999999999999999
Q ss_pred CCCCCHHHHHHHhcccCCCCCCcEEEE
Q psy10478 307 GAPKDLSAYYQEIGRAGRDGLSSVCYT 333 (451)
Q Consensus 307 ~~p~s~~~y~Qr~GRagR~g~~g~~i~ 333 (451)
|+|+++..|.|++||++|.|+...+.+
T Consensus 495 d~~wnp~~~~Qa~gR~~R~Gq~~~v~v 521 (644)
T 1z3i_X 495 DPDWNPANDEQAMARVWRDGQKKTCYI 521 (644)
T ss_dssp SCCSSHHHHHHHHTTSSSTTCCSCEEE
T ss_pred CCCCCccHHHHHHHhhhhcCCCCceEE
Confidence 999999999999999999997765444
No 69
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.76 E-value=1.5e-18 Score=164.48 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC-CCCeeeecCCCCHHHHHHHHHHhhcC-Cce-EEEEccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN-GIQNRPYHAHISLKQRKEIHGLFVKD-LIK-VVVATCA 290 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~-~~~v~~~h~~l~~~~R~~~~~~f~~g-~~~-iLVaT~~ 290 (451)
..++..|.+++......+.++||||+++..++.+...|.+. |+.+..+||+++..+|.++++.|++| ..+ +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 56777788877765557899999999999999999999985 99999999999999999999999998 777 7899999
Q ss_pred cccccccCCccEEEEeCCCCCHHHHHHHhcccCCCCCCcEE--EEEeecc
Q psy10478 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVC--YTFYKTA 338 (451)
Q Consensus 291 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~l~~~~ 338 (451)
+++|+|++++++||+||+|+++..|.|++||++|.|+.+.+ +.++...
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999987654 3444443
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.75 E-value=1.7e-18 Score=190.64 Aligned_cols=286 Identities=10% Similarity=0.061 Sum_probs=172.3
Q ss_pred cccchhhhhhcCCCChhhhcCcCcccc--CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcch---
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCC--DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPS--- 107 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~--~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~--- 107 (451)
++++++.+.+|||+|..-... ...+. .+..++||+||-+-+..+ +...+..+....+. .+......
T Consensus 300 ~~~gli~~~TGSGKT~t~~~l-~~ll~~~~~~~rvLvlvpr~eL~~Q-~~~~f~~f~~~~v~-------~~~s~~~l~~~ 370 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTSFKA-ARLATELDFIDKVFFVVDRKDLDYQ-TMKEYQRFSPDSVN-------GSENTAGLKRN 370 (1038)
T ss_dssp GGSEEEEECTTSSHHHHHHHH-HHHHTTCTTCCEEEEEECGGGCCHH-HHHHHHTTSTTCSS-------SSCCCHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHH-HHHHHhcCCCceEEEEeCcHHHHHH-HHHHHHHhcccccc-------cccCHHHHHHH
Confidence 356788899999999874222 22222 123589999998888776 66655544211110 01111111
Q ss_pred h-hcccccccCCCCchhhhcc------ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 108 Y-RCLSELRLPLPDVPILFLS------RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 108 ~-~~~~~l~~~~~~~~~~~l~------~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
. ..-..++++|++.....+. .+....+||+||||+... | ..+.. ++..+|+.++++||||+....
T Consensus 371 L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-~----~~~~~---I~~~~p~a~~lgfTATP~~~~ 442 (1038)
T 2w00_A 371 LDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-G----EAQKN---LKKKFKRYYQFGFTGTPIFPE 442 (1038)
T ss_dssp HHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-H----HHHHH---HHHHCSSEEEEEEESSCCCST
T ss_pred hcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-h----HHHHH---HHHhCCcccEEEEeCCccccc
Confidence 1 1235667777777654322 235678999999998642 1 22333 344567889999999997432
Q ss_pred H----HHHHHhcC---------------CCCCeEEecCCCCCceEE---EEE------------ecchhHHHHHHHHH-h
Q psy10478 181 I----DDICTSLM---------------LRDPNIINTGFDRPNLYL---AAS------------VKQDDIMADLRKLT-N 225 (451)
Q Consensus 181 ~----~~i~~~l~---------------l~~~~~~~~~~~~~~l~~---~~~------------~~~~~~~~~L~~~l-~ 225 (451)
- ......+| .--|..+......+.+.. ... .........+...+ .
T Consensus 443 ~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~ 522 (1038)
T 2w00_A 443 NALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILN 522 (1038)
T ss_dssp TCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 0 01111111 011111110000010000 000 00111222333222 2
Q ss_pred ---hcc------CCCCcEEEEcCChhHHHHHHHHHHHCC------------CCe-eeecCC----------C--------
Q psy10478 226 ---FEN------QFEGSTIIYCPTKVICEKVCDVLSRNG------------IQN-RPYHAH----------I-------- 265 (451)
Q Consensus 226 ---~~~------~~~~~~iVF~~t~~~~~~l~~~L~~~~------------~~v-~~~h~~----------l-------- 265 (451)
... ..+.++||||+|+.+|..+++.|.+.+ +++ ..+||+ +
T Consensus 523 ~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~ 602 (1038)
T 2w00_A 523 NFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTS 602 (1038)
T ss_dssp HHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGG
T ss_pred HHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCcccccccccccccccccc
Confidence 110 134689999999999999999998754 455 455642 2
Q ss_pred --CH-----------------------------HHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCCCCCHHH
Q psy10478 266 --SL-----------------------------KQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSA 314 (451)
Q Consensus 266 --~~-----------------------------~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~ 314 (451)
++ .+|..++++|++|+++|||+|+++.+|+|+|.+ .|+.+|.|.+...
T Consensus 603 ~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~ 681 (1038)
T 2w00_A 603 AMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHG 681 (1038)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccc
Confidence 22 247889999999999999999999999999999 7788999999999
Q ss_pred HHHHhcccCCCCCC----cEEEEEee
Q psy10478 315 YYQEIGRAGRDGLS----SVCYTFYK 336 (451)
Q Consensus 315 y~Qr~GRagR~g~~----g~~i~l~~ 336 (451)
|+|++||++|.+.. |.++-|..
T Consensus 682 liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 682 LMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred eeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999998753 66666554
No 71
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=113.32 Aligned_cols=164 Identities=15% Similarity=0.092 Sum_probs=106.4
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc--------CCCeeEEEeCccccccchhhHhhhhhhhhhhcccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC--------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEA 94 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~--------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~ 94 (451)
+...++....+++.+..+-+|+|+|......+...+. ..+.++||++|.+.+..+ +.+.+..+....+
T Consensus 47 Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~~--- 122 (228)
T 3iuy_A 47 QSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALH-VEAECSKYSYKGL--- 122 (228)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHH-HHHHHHHHCCTTC---
T ss_pred HHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHH-HHHHHHHhcccCc---
Confidence 3344444445677888999999999875544443322 256789999999998766 5555554421111
Q ss_pred eeccccCC----CCcchhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCC
Q psy10478 95 HCVSQWGH----DFRPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 166 (451)
Q Consensus 95 ~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~ 166 (451)
......|. ........-.+++++||++....+.. +.+++++||||||++.++| |++.+..+.. ...++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~--~~~~~ 198 (228)
T 3iuy_A 123 KSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME--FEPQIRKILL--DVRPD 198 (228)
T ss_dssp CEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTT--CHHHHHHHHH--HSCSS
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccc--hHHHHHHHHH--hCCcC
Confidence 11111111 11112223357889999888765432 5679999999999999988 8898887743 33458
Q ss_pred CCEEEEEeeCChHHHHHHHHhcCCCCCeEE
Q psy10478 167 VPILAVTATATPVVIDDICTSLMLRDPNII 196 (451)
Q Consensus 167 ~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~ 196 (451)
.+++++|||+++.+.+.+... +.+|..+
T Consensus 199 ~~~l~~SAT~~~~~~~~~~~~--l~~p~~i 226 (228)
T 3iuy_A 199 RQTVMTSATWPDTVRQLALSY--LKDPMIV 226 (228)
T ss_dssp CEEEEEESCCCHHHHHHHHTT--CSSCEEE
T ss_pred CeEEEEEeeCCHHHHHHHHHH--CCCCEEE
Confidence 899999999999887754443 4566554
No 72
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.14 E-value=2.8e-11 Score=116.30 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=104.6
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcccceecc-ccCCCCcchhhc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVS-QWGHDFRPSYRC 110 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~-~~~~~~~~~~~~ 110 (451)
++.+..+-++||+|......+++.+.. +..++||++|.+.+..+ ....+..+.-.. ....... ..+..+......
T Consensus 132 ~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q-~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 209 (300)
T 3fmo_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQ-TGKVIEQMGKFY-PELKLAYAVRGNKLERGQKI 209 (300)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH-HHHHHHHHTTTS-TTCCEEEESTTCCCCTTCCC
T ss_pred CeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHH-HHHHHHHHHhhC-CCcEEEEEeCCccHhhhhcC
Confidence 788888899999998876555555443 34589999999998766 444444331100 0011111 112223333344
Q ss_pred ccccccCCCCchhhhccc-----cCcccEEEEcccccccc-CCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 111 LSELRLPLPDVPILFLSR-----IPRIVLIAIDEAHCVSQ-WGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 111 ~~~l~~~~~~~~~~~l~~-----l~~l~~vViDEah~~~~-~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
-.+++++||++....+.+ +.++++|||||||++++ +| |...+..+.. ...++.|+++||||+++.+....
T Consensus 210 ~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~--~~~~~~~i~~--~~~~~~q~i~~SAT~~~~v~~~a 285 (300)
T 3fmo_B 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG--HQDQSIRIQR--MLPRNCQMLLFSATFEDSVWKFA 285 (300)
T ss_dssp CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTT--HHHHHHHHHT--TSCTTCEEEEEESCCCHHHHHHH
T ss_pred CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccC--cHHHHHHHHH--hCCCCCEEEEEeccCCHHHHHHH
Confidence 567999999998776632 56899999999999987 55 7887776633 33457899999999999887644
Q ss_pred HHhcCCCCCeEEec
Q psy10478 185 CTSLMLRDPNIINT 198 (451)
Q Consensus 185 ~~~l~l~~~~~~~~ 198 (451)
... +.+|..+..
T Consensus 286 ~~~--l~~p~~i~~ 297 (300)
T 3fmo_B 286 QKV--VPDPNVIKL 297 (300)
T ss_dssp HHH--SSSCEEEEE
T ss_pred HHH--CCCCeEEEe
Confidence 333 567777654
No 73
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.12 E-value=1.9e-11 Score=113.60 Aligned_cols=167 Identities=17% Similarity=0.111 Sum_probs=109.7
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc-------CCCeeEEEeCccccccchhhHhhhhhhhhhhccccee
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC-------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHC 96 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~-------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~ 96 (451)
...++....+++.+..+-+++|+|......++..+. .++.++||++|.+.+..+ ..+.+..+.-.. ....
T Consensus 57 ~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q-~~~~~~~~~~~~--~~~~ 133 (242)
T 3fe2_A 57 AQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQ-VQQVAAEYCRAC--RLKS 133 (242)
T ss_dssp HHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHH-HHHHHHHHHHHT--TCCE
T ss_pred HHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHH-HHHHHHHHHhhc--CceE
Confidence 333444445678888999999999886555554433 245689999999998766 555444431100 0011
Q ss_pred ccccCCC-Cc---chhhcccccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCC
Q psy10478 97 VSQWGHD-FR---PSYRCLSELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP 168 (451)
Q Consensus 97 ~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~ 168 (451)
....|.. .. .....-.+++++||++....+. .+.+++++|+||||++++|| |++.+..+. ....++.|
T Consensus 134 ~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~--~~~~~~~i~--~~~~~~~q 209 (242)
T 3fe2_A 134 TCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMG--FEPQIRKIV--DQIRPDRQ 209 (242)
T ss_dssp EEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTT--CHHHHHHHH--TTSCSSCE
T ss_pred EEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhC--cHHHHHHHH--HhCCccce
Confidence 1111211 11 1122235788999998876653 35789999999999999988 899988773 33346889
Q ss_pred EEEEEeeCChHHHHHHHHhcCCCCCeEEecC
Q psy10478 169 ILAVTATATPVVIDDICTSLMLRDPNIINTG 199 (451)
Q Consensus 169 ~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~ 199 (451)
+++||||+++.+.+.....+ .+|..+..+
T Consensus 210 ~~~~SAT~~~~~~~~~~~~l--~~~~~i~~~ 238 (242)
T 3fe2_A 210 TLMWSATWPKEVRQLAEDFL--KDYIHINIG 238 (242)
T ss_dssp EEEEESCCCHHHHHHHHHHC--SSCEEEEEC
T ss_pred EEEEEeecCHHHHHHHHHHC--CCCEEEEec
Confidence 99999999998876555554 577666554
No 74
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.09 E-value=2.7e-11 Score=112.23 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=104.0
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhh---cccceecc
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIA---IDEAHCVS 98 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~---~de~~~~~ 98 (451)
...++....+++.++.+-+++|+|......+.+.+.. ...++||++|.+.+..+ +.+.+..+.-.. +...+.+.
T Consensus 58 ~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~~~~~~~~~g~~ 136 (237)
T 3bor_A 58 QRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQ-IQKVILALGDYMGATCHACIGGT 136 (237)
T ss_dssp HHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH-HHHHHHHHTTTTTCCEEEECC--
T ss_pred HHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHH-HHHHHHHHhhhcCceEEEEECCC
Confidence 3334433446778888899999998765555554432 35689999999988766 555554432111 10111111
Q ss_pred ccCCCCcchhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEe
Q psy10478 99 QWGHDFRPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTA 174 (451)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSA 174 (451)
.+...+........+++++||++....+.. +.++++||+||||++.+++ |...+..+.. ...++.+++++||
T Consensus 137 ~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~--~~~~l~~i~~--~~~~~~~~i~~SA 212 (237)
T 3bor_A 137 NVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG--FKDQIYEIFQ--KLNTSIQVVLLSA 212 (237)
T ss_dssp -----------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT--CHHHHHHHHH--HSCTTCEEEEECS
T ss_pred chHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccC--cHHHHHHHHH--hCCCCCeEEEEEE
Confidence 122222222233367888999887665532 5679999999999999887 7777766533 2345789999999
Q ss_pred eCChHHHHHHHHhcCCCCCeEEec
Q psy10478 175 TATPVVIDDICTSLMLRDPNIINT 198 (451)
Q Consensus 175 T~~~~~~~~i~~~l~l~~~~~~~~ 198 (451)
|+++.+.+.+...+ .+|..+..
T Consensus 213 T~~~~~~~~~~~~l--~~p~~i~v 234 (237)
T 3bor_A 213 TMPTDVLEVTKKFM--RDPIRILV 234 (237)
T ss_dssp SCCHHHHHHHHHHC--SSCEEEC-
T ss_pred ecCHHHHHHHHHHC--CCCEEEEe
Confidence 99998876555544 46766543
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.06 E-value=7.6e-09 Score=109.78 Aligned_cols=165 Identities=17% Similarity=0.122 Sum_probs=122.4
Q ss_pred CEEEEEeeCChHHHHHHHHhcCCCCCeEEecCCCCCceEEEE----EecchhHHHHHHHHHhhccCCCCcEEEEcCChhH
Q psy10478 168 PILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAA----SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243 (451)
Q Consensus 168 ~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~ 243 (451)
.+.+||+|+..+. ..+.+..++. ++..+.++|...... ......++..+...+......+.|+||+|.|++.
T Consensus 380 kLsGMTGTA~tE~-~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~ 455 (997)
T 2ipc_A 380 KRAGMTGTAKTEE-KEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEK 455 (997)
T ss_dssp EEEEEESSCGGGH-HHHHHHHCCC---EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHH
T ss_pred HheecCCCchHHH-HHHHHHhCCC---EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHH
Confidence 4779999997653 4566666553 677888888764432 1222567777777776666689999999999999
Q ss_pred HHHHHHHHH-----------------------------------------------------------------------
Q psy10478 244 CEKVCDVLS----------------------------------------------------------------------- 252 (451)
Q Consensus 244 ~~~l~~~L~----------------------------------------------------------------------- 252 (451)
++.++..|.
T Consensus 456 SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 535 (997)
T 2ipc_A 456 SERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVH 535 (997)
T ss_dssp HHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhh
Confidence 999999999
Q ss_pred -----HCCCCeeeecCCCCHHHHHHHHHHhhcCC-ceEEEEccccccccccCCc-------------------c------
Q psy10478 253 -----RNGIQNRPYHAHISLKQRKEIHGLFVKDL-IKVVVATCAFGMGIDKPDV-------------------R------ 301 (451)
Q Consensus 253 -----~~~~~v~~~h~~l~~~~R~~~~~~f~~g~-~~iLVaT~~~~~GiD~p~v-------------------~------ 301 (451)
+.|++...+++.....|- +|+. ..|. -.|-|||+++|||.|+.== .
T Consensus 536 ~~~~~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~ 612 (997)
T 2ipc_A 536 TLAVLRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELF 612 (997)
T ss_dssp HHHHHHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHH
T ss_pred hhHHHHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccc
Confidence 456666667766432222 2322 2343 3599999999999998411 1
Q ss_pred -------------------------------------------------EEEEeCCCCCHHHHHHHhcccCCCCCCcEEE
Q psy10478 302 -------------------------------------------------CVIHYGAPKDLSAYYQEIGRAGRDGLSSVCY 332 (451)
Q Consensus 302 -------------------------------------------------~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i 332 (451)
+||-...+.|..-=-|-.||+||-|.||.+.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSr 692 (997)
T 2ipc_A 613 IKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSR 692 (997)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEE
T ss_pred cccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeE
Confidence 7888889999999999999999999999999
Q ss_pred EEeeccc
Q psy10478 333 TFYKTAD 339 (451)
Q Consensus 333 ~l~~~~d 339 (451)
.|++-+|
T Consensus 693 F~LSLeD 699 (997)
T 2ipc_A 693 FYVSFDD 699 (997)
T ss_dssp EEEESSS
T ss_pred EEEECCh
Confidence 8888765
No 76
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.06 E-value=5.6e-11 Score=110.52 Aligned_cols=173 Identities=16% Similarity=0.097 Sum_probs=108.2
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC---CCeeEEEeCccccccchhhHhhhhhhhhh---hccccee
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD---NCRQVVYMTPEYVTNNTSFLSRIPRIVLI---AIDEAHC 96 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~---~~~~vl~~tPe~l~~~~~~~~~l~~~~~~---~~de~~~ 96 (451)
+...++....+++.+..+-+++|+|......++..+.. .+.++||++|.+.+..+ +.+.+..+.-. .+...+.
T Consensus 56 Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~~~~~~~~~~ 134 (245)
T 3dkp_A 56 QMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ-IHRELIKISEGTGFRIHMIHK 134 (245)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH-HHHHHHHHTTTSCCCEECCCH
T ss_pred HHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH-HHHHHHHHhcccCceEEEEec
Confidence 33444444456778888899999998765555554432 45689999999998766 55554443110 0001111
Q ss_pred ccccCCCCcchhhcccccccCCCCchhhhccc------cCcccEEEEccccccccCC-CCcHHHHHHHHHhhccCCCCCE
Q psy10478 97 VSQWGHDFRPSYRCLSELRLPLPDVPILFLSR------IPRIVLIAIDEAHCVSQWG-HDFRPSYRCLSELRLPLPDVPI 169 (451)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~------l~~l~~vViDEah~~~~~g-~~fr~~~~~l~~l~~~~~~~~~ 169 (451)
.......+......-.+++++||++....+.. +.+++++|+||||++.+|+ ..|+..+..+... ...++.++
T Consensus 135 ~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ 213 (245)
T 3dkp_A 135 AAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLA-CTSHKVRR 213 (245)
T ss_dssp HHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHH-CCCTTCEE
T ss_pred CccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHh-cCCCCcEE
Confidence 11111122222334467888999888765532 4679999999999999875 3488887766322 12357899
Q ss_pred EEEEeeCChHHHHHHHHhcCCCCCeEEecC
Q psy10478 170 LAVTATATPVVIDDICTSLMLRDPNIINTG 199 (451)
Q Consensus 170 v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~ 199 (451)
++||||+++.+.+..... +.+|..+..+
T Consensus 214 ~~~SAT~~~~v~~~~~~~--l~~p~~i~~~ 241 (245)
T 3dkp_A 214 AMFSATFAYDVEQWCKLN--LDNVISVSIG 241 (245)
T ss_dssp EEEESSCCHHHHHHHHHH--SSSCEEEEEC
T ss_pred EEEeccCCHHHHHHHHHh--CCCCEEEEeC
Confidence 999999998887644433 4577766554
No 77
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.05 E-value=2.3e-11 Score=114.58 Aligned_cols=158 Identities=16% Similarity=0.096 Sum_probs=101.4
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc------CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceec
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCV 97 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~ 97 (451)
...++....+++.+..+-+|||+|......+++.+. .++.++||++|.+.+..+ ..+.+..+...... ...
T Consensus 82 ~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q-~~~~~~~~~~~~~~--~~~ 158 (262)
T 3ly5_A 82 HKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQ-TFGVLKELMTHHVH--TYG 158 (262)
T ss_dssp HHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHH-HHHHHHHHTTTCCS--CEE
T ss_pred HHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHH-HHHHHHHHHhhcCc--eEE
Confidence 334444444577888999999999876555544332 245789999999998766 55544443110000 001
Q ss_pred cccCCC-Ccch---hhcccccccCCCCchhhhcc-----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCC
Q psy10478 98 SQWGHD-FRPS---YRCLSELRLPLPDVPILFLS-----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP 168 (451)
Q Consensus 98 ~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~l~-----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~ 168 (451)
...|.. .... ...-.+++++||++....+. .+.++++|||||||++++|| |++.+..+... ..++.+
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~--~~~~l~~i~~~--~~~~~q 234 (262)
T 3ly5_A 159 LIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG--FEEELKQIIKL--LPTRRQ 234 (262)
T ss_dssp EECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTT--CHHHHHHHHHH--SCSSSE
T ss_pred EEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhh--HHHHHHHHHHh--CCCCCe
Confidence 111111 1111 11225789999998866543 25679999999999999988 88888877443 234688
Q ss_pred EEEEEeeCChHHHHHHHHhc
Q psy10478 169 ILAVTATATPVVIDDICTSL 188 (451)
Q Consensus 169 ~v~lSAT~~~~~~~~i~~~l 188 (451)
+++||||+++.+.+.....+
T Consensus 235 ~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 235 TMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp EEEECSSCCHHHHHHHHHHC
T ss_pred EEEEEecCCHHHHHHHHHHc
Confidence 99999999998876444333
No 78
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.04 E-value=5.4e-11 Score=108.73 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=106.2
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcc--cceeccc
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAID--EAHCVSQ 99 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~d--e~~~~~~ 99 (451)
...++....+++.+..+-+|+|+|......+.+.+.. +..++||++|.+.+..+ +.+.+..+.-.... .......
T Consensus 32 ~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~ 110 (219)
T 1q0u_A 32 ERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQ-IYHETLKITKFCPKDRMIVARCL 110 (219)
T ss_dssp HHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH-HHHHHHHHHTTSCGGGCCCEEEE
T ss_pred HHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHH-HHHHHHHHhhhcccccceEEEEE
Confidence 3334444446778888999999998765555555442 34689999999988766 55544443111100 0011111
Q ss_pred cCCC-Cc---chhhcccccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEE
Q psy10478 100 WGHD-FR---PSYRCLSELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILA 171 (451)
Q Consensus 100 ~~~~-~~---~~~~~~~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~ 171 (451)
.|.. .. .....-.+++++||++....+. .+.+++++|+||||++.+|+ |...+..+... ..++.++++
T Consensus 111 ~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~--~~~~l~~i~~~--~~~~~~~l~ 186 (219)
T 1q0u_A 111 IGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMG--FITDVDQIAAR--MPKDLQMLV 186 (219)
T ss_dssp CCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTT--CHHHHHHHHHT--SCTTCEEEE
T ss_pred eCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhC--hHHHHHHHHHh--CCcccEEEE
Confidence 1111 11 1111235688889888766543 24679999999999999988 77776665332 234788999
Q ss_pred EEeeCChHHHHHHHHhcCCCCCeEEecCCCCCc
Q psy10478 172 VTATATPVVIDDICTSLMLRDPNIINTGFDRPN 204 (451)
Q Consensus 172 lSAT~~~~~~~~i~~~l~l~~~~~~~~~~~~~~ 204 (451)
+|||+++.+.+.+... +.+|..+.....+++
T Consensus 187 ~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~~ 217 (219)
T 1q0u_A 187 FSATIPEKLKPFLKKY--MENPTFVHVLEHHHH 217 (219)
T ss_dssp EESCCCGGGHHHHHHH--CSSCEEEECC-----
T ss_pred EecCCCHHHHHHHHHH--cCCCeEEEeeccccc
Confidence 9999998876654443 468887776665554
No 79
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.02 E-value=1.2e-10 Score=108.96 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=103.9
Q ss_pred hcccchhhhhhcCCCChhhhcCcCccccC-----------CCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCCD-----------NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~~-----------~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
.+++.+..+-+++|+|......+.+.+.. +..++||++|.+.+..+ +.+.+..+.... ........
T Consensus 59 ~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~--~~~~~~~~ 135 (253)
T 1wrb_A 59 EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQ-ILSESQKFSLNT--PLRSCVVY 135 (253)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHH-HHHHHHHHHTTS--SCCEEEEC
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHH-HHHHHHHHhccC--CceEEEEE
Confidence 35677888889999998765555544332 23589999999988776 555554432110 00111111
Q ss_pred C-CCCcch---hhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCC--CCCEE
Q psy10478 101 G-HDFRPS---YRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP--DVPIL 170 (451)
Q Consensus 101 ~-~~~~~~---~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~--~~~~v 170 (451)
| ...... ...-.+++++||++....+.. +.+++++|+||||++.++| |++.+..+........ +.+++
T Consensus 136 g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~q~l 213 (253)
T 1wrb_A 136 GGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEESNMPSGINRQTL 213 (253)
T ss_dssp SSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSSCCCCGGGCEEE
T ss_pred CCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhccCCCCCCcEEE
Confidence 1 112111 122357889999988765532 5678999999999999988 8898888755333333 67899
Q ss_pred EEEeeCChHHHHHHHHhcCCCCCeEEecC
Q psy10478 171 AVTATATPVVIDDICTSLMLRDPNIINTG 199 (451)
Q Consensus 171 ~lSAT~~~~~~~~i~~~l~l~~~~~~~~~ 199 (451)
++|||+++.+.+.....+ .+|..+..+
T Consensus 214 ~~SAT~~~~~~~~~~~~l--~~~~~i~~~ 240 (253)
T 1wrb_A 214 MFSATFPKEIQKLAADFL--YNYIFMTVG 240 (253)
T ss_dssp EEESSCCHHHHHHHHHHC--SSCEEEEEC
T ss_pred EEEEeCCHHHHHHHHHHc--CCCEEEEEC
Confidence 999999988766444443 467665543
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.00 E-value=2.2e-10 Score=104.91 Aligned_cols=166 Identities=14% Similarity=0.129 Sum_probs=102.2
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc--CCCeeEEEeCccccccchhhHhhhhhhhhh---hcccceecc
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC--DNCRQVVYMTPEYVTNNTSFLSRIPRIVLI---AIDEAHCVS 98 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~--~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~---~~de~~~~~ 98 (451)
...++....+++.+..+-+|+|+|......+++.+. ....++||++|.+.+..+ +.+.+..+... .+...+...
T Consensus 42 ~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~~~~~~~~~g~~ 120 (224)
T 1qde_A 42 QRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQ-IQKVVMALAFHMDIKVHACIGGT 120 (224)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHH-HHHHHHHHTTTSCCCEEEECC--
T ss_pred HHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHH-HHHHHHHHhcccCceEEEEeCCc
Confidence 334444445677888999999999775444444433 234689999999988766 55544433110 011111111
Q ss_pred ccCCCCcchhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEe
Q psy10478 99 QWGHDFRPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTA 174 (451)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSA 174 (451)
.+..+... ... .++++.||+.....+.. +.+++++|+||||++.+++ |+..+..+... ..++.+++++||
T Consensus 121 ~~~~~~~~-~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~--~~~~l~~i~~~--~~~~~~~i~lSA 194 (224)
T 1qde_A 121 SFVEDAEG-LRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG--FKEQIYQIFTL--LPPTTQVVLLSA 194 (224)
T ss_dssp ---------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHH--SCTTCEEEEEES
T ss_pred chHHHHhc-CCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhh--hHHHHHHHHHh--CCccCeEEEEEe
Confidence 11111111 111 67888888887655433 5679999999999999887 88877766433 235788999999
Q ss_pred eCChHHHHHHHHhcCCCCCeEEec
Q psy10478 175 TATPVVIDDICTSLMLRDPNIINT 198 (451)
Q Consensus 175 T~~~~~~~~i~~~l~l~~~~~~~~ 198 (451)
|+++.+.+.+... +.+|..+..
T Consensus 195 T~~~~~~~~~~~~--~~~p~~i~~ 216 (224)
T 1qde_A 195 TMPNDVLEVTTKF--MRNPVRILV 216 (224)
T ss_dssp SCCHHHHHHHHHH--CSSCEEEC-
T ss_pred ecCHHHHHHHHHH--CCCCEEEEe
Confidence 9999877655444 356766544
No 81
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.99 E-value=1.7e-10 Score=106.66 Aligned_cols=167 Identities=15% Similarity=0.122 Sum_probs=104.8
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc------CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceec
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC------DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCV 97 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~------~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~ 97 (451)
...++....+++.+..+-+|+|+|......+.+.+. .++.++||++|.+.+..+ +.+.+..+.... .....
T Consensus 53 ~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~--~~~~~ 129 (236)
T 2pl3_A 53 KQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQ-TFEVLRKVGKNH--DFSAG 129 (236)
T ss_dssp HHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHH-HHHHHHHHTTTS--SCCEE
T ss_pred HHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHH-HHHHHHHHhCCC--CeeEE
Confidence 334444445677888899999999875544444331 235689999999988776 555555431100 00111
Q ss_pred cccCCC-Ccch--hhcccccccCCCCchhhhcc-----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCE
Q psy10478 98 SQWGHD-FRPS--YRCLSELRLPLPDVPILFLS-----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPI 169 (451)
Q Consensus 98 ~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~l~-----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~ 169 (451)
...|.. .... ...-.+++++||+.....+. .+.+++++|+||||++.+|| |.+.+..+... ..++.++
T Consensus 130 ~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~--~~~~~~~ 205 (236)
T 2pl3_A 130 LIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMG--FADTMNAVIEN--LPKKRQT 205 (236)
T ss_dssp EECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTT--THHHHHHHHHT--SCTTSEE
T ss_pred EEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCC--cHHHHHHHHHh--CCCCCeE
Confidence 111111 1111 11235788889988865542 24678999999999999988 77777666332 2347889
Q ss_pred EEEEeeCChHHHHHHHHhcCCCCCeEEecC
Q psy10478 170 LAVTATATPVVIDDICTSLMLRDPNIINTG 199 (451)
Q Consensus 170 v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~ 199 (451)
+++|||+++.+.+ .....+.+|..+..+
T Consensus 206 l~~SAT~~~~~~~--~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 206 LLFSATQTKSVKD--LARLSLKNPEYVWVH 233 (236)
T ss_dssp EEEESSCCHHHHH--HHHHSCSSCEEEECC
T ss_pred EEEEeeCCHHHHH--HHHHhCCCCEEEEeC
Confidence 9999999998765 333446778776543
No 82
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.99 E-value=4e-10 Score=101.68 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=102.4
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc--CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccC
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC--DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWG 101 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~--~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~ 101 (451)
...++....+++.+..+-+++|+|......+.+.+. .+..++||++|.+.+..+ +.+.+..+.-.. .........|
T Consensus 31 ~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~-~~~~~~~~~g 108 (206)
T 1vec_A 31 EESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQ-VSQICIQVSKHM-GGAKVMATTG 108 (206)
T ss_dssp HHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHH-HHHHHHHHTTTS-SSCCEEEECS
T ss_pred HHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHH-HHHHHHHHHhhc-CCceEEEEeC
Confidence 333333344577788888999999765544444433 234689999999988766 555544431100 0011111111
Q ss_pred -CCCcch---hhcccccccCCCCchhhhcc----ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEE
Q psy10478 102 -HDFRPS---YRCLSELRLPLPDVPILFLS----RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVT 173 (451)
Q Consensus 102 -~~~~~~---~~~~~~l~~~~~~~~~~~l~----~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lS 173 (451)
...... ...-.++++.||+.....+. .+.+++++|+||||++.+++ |+..+..+... ..++.+++++|
T Consensus 109 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~--~~~~l~~i~~~--~~~~~~~l~~S 184 (206)
T 1vec_A 109 GTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD--FVQIMEDIILT--LPKNRQILLYS 184 (206)
T ss_dssp SSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT--THHHHHHHHHH--SCTTCEEEEEE
T ss_pred CccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC--cHHHHHHHHHh--CCccceEEEEE
Confidence 111111 12235688888888765543 25689999999999998866 88877776432 23478999999
Q ss_pred eeCChHHHHHHHHhcCCCCCeEE
Q psy10478 174 ATATPVVIDDICTSLMLRDPNII 196 (451)
Q Consensus 174 AT~~~~~~~~i~~~l~l~~~~~~ 196 (451)
||+++.+.+.+...+ .+|..+
T Consensus 185 AT~~~~~~~~~~~~l--~~p~~i 205 (206)
T 1vec_A 185 ATFPLSVQKFMNSHL--EKPYEI 205 (206)
T ss_dssp SCCCHHHHHHHHHHC--SSCEEE
T ss_pred eeCCHHHHHHHHHHc--CCCeEe
Confidence 999998877555554 455443
No 83
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.98 E-value=1.3e-10 Score=108.60 Aligned_cols=167 Identities=14% Similarity=0.048 Sum_probs=106.3
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
+...++....+++.+..+-+|+|+|......+++.+.. ++.++||++|.+.+..+ +.+.+..+.-.. ........
T Consensus 70 Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q-~~~~~~~~~~~~--~~~~~~~~ 146 (249)
T 3ber_A 70 QIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQ-ISEQFEALGSSI--GVQSAVIV 146 (249)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHH-HHHHHHHHHGGG--TCCEEEEC
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHH-HHHHHHHHhccC--CeeEEEEE
Confidence 33444444456778888889999998765555544332 34679999999988766 555444431100 00111111
Q ss_pred CC-CCc---chhhcccccccCCCCchhhhccc-----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEE
Q psy10478 101 GH-DFR---PSYRCLSELRLPLPDVPILFLSR-----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILA 171 (451)
Q Consensus 101 ~~-~~~---~~~~~~~~l~~~~~~~~~~~l~~-----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~ 171 (451)
|. ... .....-.+++++||++....+.. +.++++||+||||++.+++ |++.+..+.. ...++.++++
T Consensus 147 g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~--~~~~l~~i~~--~~~~~~~~l~ 222 (249)
T 3ber_A 147 GGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMD--FETEVDKILK--VIPRDRKTFL 222 (249)
T ss_dssp TTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTT--CHHHHHHHHH--SSCSSSEEEE
T ss_pred CCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccC--hHHHHHHHHH--hCCCCCeEEE
Confidence 11 111 11123357889999888665432 4678999999999999987 8888877743 2334789999
Q ss_pred EEeeCChHHHHHHHHhcCCCCCeEEec
Q psy10478 172 VTATATPVVIDDICTSLMLRDPNIINT 198 (451)
Q Consensus 172 lSAT~~~~~~~~i~~~l~l~~~~~~~~ 198 (451)
||||+++.+.+..... +.+|..+..
T Consensus 223 ~SAT~~~~v~~~~~~~--l~~p~~i~v 247 (249)
T 3ber_A 223 FSATMTKKVQKLQRAA--LKNPVKCAV 247 (249)
T ss_dssp EESSCCHHHHHHHHHH--CSSCEEEEC
T ss_pred EeccCCHHHHHHHHHH--CCCCEEEEe
Confidence 9999999876644333 467766654
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.98 E-value=9.6e-11 Score=107.03 Aligned_cols=167 Identities=11% Similarity=0.074 Sum_probs=101.7
Q ss_pred HHHHHhhhhhcccchhhhhhcCCCChhhhcCcCccccC--CCeeEEEeCccccccchhhHhhhhhhhhhhcccceecccc
Q psy10478 23 VEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD--NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 23 ~~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~~--~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~ 100 (451)
+...++....+++.+..+-+++|+|......+.+.+.. +..++||++|.+.+..+ +.+.+..+.-.. .........
T Consensus 41 Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~-~~~~v~~~~ 118 (220)
T 1t6n_A 41 QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQ-ISKEYERFSKYM-PNVKVAVFF 118 (220)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHH-HHHHHHHHTTTS-TTCCEEEES
T ss_pred HHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHH-HHHHHHHHHhhC-CCceEEEEe
Confidence 33344433445778888999999998766555555443 34589999999888766 555444431100 011111111
Q ss_pred CC-CCcch----hhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEE
Q psy10478 101 GH-DFRPS----YRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILA 171 (451)
Q Consensus 101 ~~-~~~~~----~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~ 171 (451)
|. ..... .....++++.||+.....+.. +.+++++|+||||++.++ ..|+..+..+.. ...++.++++
T Consensus 119 g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~-~~~~~~~~~i~~--~~~~~~~~i~ 195 (220)
T 1t6n_A 119 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ-LDMRRDVQEIFR--MTPHEKQVMM 195 (220)
T ss_dssp CCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS-HHHHHHHHHHHH--TSCSSSEEEE
T ss_pred CCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcc-cCcHHHHHHHHH--hCCCcCeEEE
Confidence 11 11111 122347888898887654432 567999999999999874 126666666533 2234789999
Q ss_pred EEeeCChHHHHHHHHhcCCCCCeEE
Q psy10478 172 VTATATPVVIDDICTSLMLRDPNII 196 (451)
Q Consensus 172 lSAT~~~~~~~~i~~~l~l~~~~~~ 196 (451)
+|||+++.+.+.. +. .+.+|..+
T Consensus 196 ~SAT~~~~~~~~~-~~-~~~~p~~i 218 (220)
T 1t6n_A 196 FSATLSKEIRPVC-RK-FMQDPMEI 218 (220)
T ss_dssp EESCCCTTTHHHH-HT-TCSSCEEE
T ss_pred EEeecCHHHHHHH-HH-HcCCCeEE
Confidence 9999998876533 32 34566654
No 85
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.98 E-value=1.4e-10 Score=104.66 Aligned_cols=163 Identities=16% Similarity=0.199 Sum_probs=103.0
Q ss_pred HHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc-----CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccc
Q psy10478 25 KYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC-----DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQ 99 (451)
Q Consensus 25 ~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~-----~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~ 99 (451)
..++....+++.+..+-+++|+|......+.+.+. .+..+++|++|.+.+..+ +.+.+..+... ......
T Consensus 30 ~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~----~~~~~~ 104 (207)
T 2gxq_A 30 AALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQ-VASELTAVAPH----LKVVAV 104 (207)
T ss_dssp HHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHH-HHHHHHHHCTT----SCEEEE
T ss_pred HHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHH-HHHHHHHHhhc----ceEEEE
Confidence 33333344677888899999999875444444432 345789999999888766 55555443110 111111
Q ss_pred cCCC-C---cchhhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEE
Q psy10478 100 WGHD-F---RPSYRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILA 171 (451)
Q Consensus 100 ~~~~-~---~~~~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~ 171 (451)
.|.. . ......-.++++.||+.....+.. +.+++++|+||||++.+++ |...+..+.. ...++.++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~--~~~~~~~~i~ 180 (207)
T 2gxq_A 105 YGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG--FEEEVEALLS--ATPPSRQTLL 180 (207)
T ss_dssp CSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT--CHHHHHHHHH--TSCTTSEEEE
T ss_pred ECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccc--hHHHHHHHHH--hCCccCeEEE
Confidence 1111 1 111223367888888887655432 5679999999999998877 7887776633 3335788999
Q ss_pred EEeeCChHHHHHHHHhcCCCCCeEEec
Q psy10478 172 VTATATPVVIDDICTSLMLRDPNIINT 198 (451)
Q Consensus 172 lSAT~~~~~~~~i~~~l~l~~~~~~~~ 198 (451)
+|||+++.+.+..... +.+|..+..
T Consensus 181 ~SAT~~~~~~~~~~~~--~~~p~~i~~ 205 (207)
T 2gxq_A 181 FSATLPSWAKRLAERY--MKNPVLINV 205 (207)
T ss_dssp ECSSCCHHHHHHHHHH--CSSCEEEEC
T ss_pred EEEecCHHHHHHHHHH--cCCCeEEEc
Confidence 9999998876533333 456766543
No 86
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.94 E-value=3.6e-10 Score=104.08 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=103.5
Q ss_pred HHHHhhhhhcccchhhhhhcCCCChhhhcCcCcccc--CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccC
Q psy10478 24 EKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCC--DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWG 101 (451)
Q Consensus 24 ~~~~~~~~~~~~~i~a~~~~s~~~~~e~~~~~~~~~--~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~ 101 (451)
...++....+++.+..+-+++|+|......+++.+. ....++||++|.+.+..+ +.+.+..+.... .........|
T Consensus 52 ~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~-~~~~~~~~~g 129 (230)
T 2oxc_A 52 LKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQ-IHSVITAIGIKM-EGLECHVFIG 129 (230)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHH-HHHHHHHHTTTS-TTCCEEEECT
T ss_pred HHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHH-HHHHHHHHhccc-CCceEEEEeC
Confidence 334444444677888899999999775444444432 234689999999988766 555554431100 0011111111
Q ss_pred CC-Ccch--hhcccccccCCCCchhhhccc----cCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEe
Q psy10478 102 HD-FRPS--YRCLSELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTA 174 (451)
Q Consensus 102 ~~-~~~~--~~~~~~l~~~~~~~~~~~l~~----l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSA 174 (451)
.. .... ...-.++++.||++....+.. +.+++++|+||||++.++|. |++.+..+... ..++.+++++||
T Consensus 130 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~-~~~~~~~i~~~--~~~~~~~l~lSA 206 (230)
T 2oxc_A 130 GTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGS-FQEQINWIYSS--LPASKQMLAVSA 206 (230)
T ss_dssp TSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTS-SHHHHHHHHHH--SCSSCEEEEEES
T ss_pred CCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcc-hHHHHHHHHHh--CCCCCeEEEEEe
Confidence 11 1111 112357888899887665432 46789999999999998863 78887766432 234788999999
Q ss_pred eCChHHHHHHHHhcCCCCCeEEec
Q psy10478 175 TATPVVIDDICTSLMLRDPNIINT 198 (451)
Q Consensus 175 T~~~~~~~~i~~~l~l~~~~~~~~ 198 (451)
|+++.+.+.+... +.+|..+..
T Consensus 207 T~~~~~~~~~~~~--~~~p~~i~~ 228 (230)
T 2oxc_A 207 TYPEFLANALTKY--MRDPTFVRL 228 (230)
T ss_dssp CCCHHHHHHHTTT--CSSCEEECC
T ss_pred ccCHHHHHHHHHH--cCCCeEEEc
Confidence 9998865543332 457766543
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.52 E-value=3.4e-08 Score=102.54 Aligned_cols=98 Identities=21% Similarity=0.192 Sum_probs=64.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEE--EccccccccccCC----ccEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVV--ATCAFGMGIDKPD----VRCV 303 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLV--aT~~~~~GiD~p~----v~~V 303 (451)
.++.++||++|....+.+++.|.. . ....++.. .+|.++++.|+++. .|++ +|..+.+|||+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 567899999999999999988865 2 23456554 46889999999865 5666 8899999999997 8999
Q ss_pred EEeCCCCC----H--------------------------HHHHHHhcccCCCCC-CcEEEE
Q psy10478 304 IHYGAPKD----L--------------------------SAYYQEIGRAGRDGL-SSVCYT 333 (451)
Q Consensus 304 I~~~~p~s----~--------------------------~~y~Qr~GRagR~g~-~g~~i~ 333 (451)
|++++|.. + ..+.|.+||+-|... .|..++
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 99998851 1 234699999999753 454333
No 88
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.35 E-value=3.9e-06 Score=88.29 Aligned_cols=161 Identities=19% Similarity=0.204 Sum_probs=99.7
Q ss_pred CCEEEEEeeCChHHHHHHHHhcCCCCCeEEecC--CCCCceEEEEEec--------chhHHHH----HHHHHhhccCCCC
Q psy10478 167 VPILAVTATATPVVIDDICTSLMLRDPNIINTG--FDRPNLYLAASVK--------QDDIMAD----LRKLTNFENQFEG 232 (451)
Q Consensus 167 ~~~v~lSAT~~~~~~~~i~~~l~l~~~~~~~~~--~~~~~l~~~~~~~--------~~~~~~~----L~~~l~~~~~~~~ 232 (451)
..+|++|||+++ .+.+.+.+|+. ......+ ++..+....+... ....... +..++.. .++
T Consensus 376 ~~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~---~~g 449 (620)
T 4a15_A 376 SKTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK---VKK 449 (620)
T ss_dssp SEEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH---HCS
T ss_pred CeEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh---CCC
Confidence 457899999997 56778888987 5444433 3333432222110 1111223 3333333 467
Q ss_pred cEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc--ccccccccCC--ccEEEEeCC
Q psy10478 233 STIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC--AFGMGIDKPD--VRCVIHYGA 308 (451)
Q Consensus 233 ~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~--~~~~GiD~p~--v~~VI~~~~ 308 (451)
.++||++|....+.+++.|+. .... ...+++..++..+++.|+ ++-.||++|. .+.+|||+|+ .+.||..++
T Consensus 450 ~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~l 525 (620)
T 4a15_A 450 NTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGL 525 (620)
T ss_dssp CEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSC
T ss_pred CEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcC
Confidence 799999999999999988762 2222 445566678999999999 8888999985 9999999985 578999888
Q ss_pred CCC-----------------------------HHHHHHHhcccCCCCCCcEEEEEeec
Q psy10478 309 PKD-----------------------------LSAYYQEIGRAGRDGLSSVCYTFYKT 337 (451)
Q Consensus 309 p~s-----------------------------~~~y~Qr~GRagR~g~~g~~i~l~~~ 337 (451)
|.. .....|-+||+=|.-..--+++++++
T Consensus 526 Pfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 526 PFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 741 11236999999997654334444443
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.33 E-value=1.6e-07 Score=88.95 Aligned_cols=136 Identities=8% Similarity=0.025 Sum_probs=81.7
Q ss_pred ccchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCC-CCcchhhccc
Q psy10478 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGH-DFRPSYRCLS 112 (451)
Q Consensus 34 ~~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~-~~~~~~~~~~ 112 (451)
.+.++++-+|+|+|..-...+...+..+..++||++|.+.+..+ +.+.+..+........+ ...+. .-........
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 205 (282)
T 1rif_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQ-MADDFVDYRLFSHAMIK--KIGGGASKDDKYKNDA 205 (282)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHH-HHHHHHHHTSCCGGGEE--ECSTTCSSTTCCCTTC
T ss_pred CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHHHHhcccccceEE--EEeCCCcchhhhccCC
Confidence 45677889999999876555555455566699999999887766 66666554211111111 11111 1111111335
Q ss_pred ccccCCCCchhhhcc-ccCcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 113 ELRLPLPDVPILFLS-RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 113 ~l~~~~~~~~~~~l~-~l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
.+.+.||+....... .+.++++||+||||++.. +.+..+ +....+..+++++|||++...
T Consensus 206 ~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~------~~~~~i--l~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 206 PVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG------KSISSI--ISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp SEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCH------HHHHHH--TTTCTTCCEEEEECSSCCTTS
T ss_pred cEEEEchHHHHhhHHHHHhhCCEEEEECCccCCc------ccHHHH--HHHhhcCCeEEEEeCCCCCcc
Confidence 666777765443321 245799999999999863 344433 222235788999999997654
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.32 E-value=1.1e-07 Score=87.75 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=83.3
Q ss_pred hcccchhhhhhcCCCChhhhcCcCcccc----CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCC--Cc
Q psy10478 32 CRRKYLLNHFKGSSVTMAESQVPPDKCC----DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHD--FR 105 (451)
Q Consensus 32 ~~~~~i~a~~~~s~~~~~e~~~~~~~~~----~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~--~~ 105 (451)
.++..++.+-.|||+|..-.....+... .+..++++..|.+.+..+ ..+.+....- ...+...|.. +.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q-~~~~~~~~~~-----~~~~~~~g~~~~~~ 148 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVS-VAERVAFERG-----EEPGKSCGYSVRFE 148 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHH-HHHHHHHTTT-----CCTTSSEEEEETTE
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHH-HHHHHHHHhc-----cccCceEEEeechh
Confidence 4556677788899988643333333221 124589999999987655 3333221100 0001111111 11
Q ss_pred ch-hhcccccccCCCCchhhhcc-ccCcccEEEEcccccc-ccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHH
Q psy10478 106 PS-YRCLSELRLPLPDVPILFLS-RIPRIVLIAIDEAHCV-SQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVID 182 (451)
Q Consensus 106 ~~-~~~~~~l~~~~~~~~~~~l~-~l~~l~~vViDEah~~-~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~ 182 (451)
.. .....+++++||++....+. .+.++++|||||||.+ .+.+ |.. ..+..+....++.++++||||++.+.
T Consensus 149 ~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~--~~~--~~l~~i~~~~~~~~~il~SAT~~~~~-- 222 (235)
T 3llm_A 149 SILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTD--FLL--VVLRDVVQAYPEVRIVLMSATIDTSM-- 222 (235)
T ss_dssp EECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHH--HHH--HHHHHHHHHCTTSEEEEEECSSCCHH--
T ss_pred hccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchH--HHH--HHHHHHHhhCCCCeEEEEecCCCHHH--
Confidence 11 11235688889988776654 3688999999999985 3322 331 12333444457899999999999876
Q ss_pred HHHHhcC
Q psy10478 183 DICTSLM 189 (451)
Q Consensus 183 ~i~~~l~ 189 (451)
+.++++
T Consensus 223 -~~~~~~ 228 (235)
T 3llm_A 223 -FCEYFF 228 (235)
T ss_dssp -HHHHTT
T ss_pred -HHHHcC
Confidence 444443
No 91
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.02 E-value=2.9e-07 Score=83.06 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=71.4
Q ss_pred cccchhhhhhcCCCChhhhcCcCcccc-----CCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCC-CCcc
Q psy10478 33 RRKYLLNHFKGSSVTMAESQVPPDKCC-----DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGH-DFRP 106 (451)
Q Consensus 33 ~~~~i~a~~~~s~~~~~e~~~~~~~~~-----~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~-~~~~ 106 (451)
+++.++.+.+++|+|......+.+.+. ....++||++|.+.+..+.+.+.+..+.-. ........|. ....
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~---~~~v~~~~g~~~~~~ 124 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK---WYRVIGLSGDTQLKI 124 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT---TSCEEECCC---CCC
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc---CceEEEEeCCcccch
Confidence 456777888888888765544443322 124689999999877544233334333110 0011111111 1111
Q ss_pred ---hhhcccccccCCCCchhhhccc----------cCcccEEEEccccccccCCCCcHHHHHHHHHhh-----------c
Q psy10478 107 ---SYRCLSELRLPLPDVPILFLSR----------IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELR-----------L 162 (451)
Q Consensus 107 ---~~~~~~~l~~~~~~~~~~~l~~----------l~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~-----------~ 162 (451)
....-..+++.||+.....+.. +.++++|||||||++...+ .+...+..+.... .
T Consensus 125 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (216)
T 3b6e_A 125 SFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA-VYNNIMRHYLMQKLKNNRLKKENKP 203 (216)
T ss_dssp CHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC-cHHHHHHHHHHHhcccccccccccC
Confidence 1122366777887776554432 4678999999999997543 1333333321111 0
Q ss_pred cCCCCCEEEEEee
Q psy10478 163 PLPDVPILAVTAT 175 (451)
Q Consensus 163 ~~~~~~~v~lSAT 175 (451)
..+..++++||||
T Consensus 204 ~~~~~~~l~lSAT 216 (216)
T 3b6e_A 204 VIPLPQILGLTAS 216 (216)
T ss_dssp CCCCCEEEEEECC
T ss_pred CCCcceEEEeecC
Confidence 1257889999998
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.01 E-value=0.00013 Score=75.81 Aligned_cols=135 Identities=11% Similarity=0.101 Sum_probs=84.6
Q ss_pred CCEEEEEeeCChHHHHHHHHhcCCCCCeE-----E--ecCCCCCceEEEEEec-c-------hhHHHHHHHHHhhc-cCC
Q psy10478 167 VPILAVTATATPVVIDDICTSLMLRDPNI-----I--NTGFDRPNLYLAASVK-Q-------DDIMADLRKLTNFE-NQF 230 (451)
Q Consensus 167 ~~~v~lSAT~~~~~~~~i~~~l~l~~~~~-----~--~~~~~~~~l~~~~~~~-~-------~~~~~~L~~~l~~~-~~~ 230 (451)
.++|++|||+++ .+.+.+.+|+..+.. . ..++ ..+..+.+... . ......+.+.+... ...
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 679999999987 457788899874432 0 1122 33333222211 0 11123333333221 125
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEc--cccccccccC-----CccEE
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT--CAFGMGIDKP-----DVRCV 303 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT--~~~~~GiD~p-----~v~~V 303 (451)
++.++||++|....+.+++. .+..+..=..+++ +.+.++.|+.+.-.||+|| ..+.+|||+| ..+.|
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 67999999999999999872 3443433333455 4556777754444799998 6999999999 37889
Q ss_pred EEeCCCC
Q psy10478 304 IHYGAPK 310 (451)
Q Consensus 304 I~~~~p~ 310 (451)
|..++|.
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 9888764
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.82 E-value=4.6e-06 Score=76.84 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=70.2
Q ss_pred cchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhccccc
Q psy10478 35 KYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSEL 114 (451)
Q Consensus 35 ~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l 114 (451)
..++.+-.++|+|......+... ..+++|++|.+.+..+ +.+.+..++...+.. ++.+. .....+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q-~~~~~~~~~~~~v~~------~~g~~----~~~~~i 174 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQ-WKERLGIFGEEYVGE------FSGRI----KELKPL 174 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHH-HHHHHGGGCGGGEEE------ESSSC----BCCCSE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHH-HHHHHHhCCCCeEEE------EeCCC----CCcCCE
Confidence 46778888888887643333222 4578999999777655 666555532110111 11110 112345
Q ss_pred ccCCCCchhhhcccc-CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 115 RLPLPDVPILFLSRI-PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 115 ~~~~~~~~~~~l~~l-~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
.+.+++........+ .++++|||||||.+...+ | ..+. ..++..+++++|||+....
T Consensus 175 ~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~--~----~~i~---~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 175 TVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAES--Y----VQIA---QMSIAPFRLGLTATFERED 232 (237)
T ss_dssp EEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTT--H----HHHH---HTCCCSEEEEEEESCC---
T ss_pred EEEeHHHHHhhHHHhcccCCEEEEECCccCCChH--H----HHHH---HhccCCEEEEEecCCCCCC
Confidence 555555544333322 359999999999997643 3 3332 3345678899999997654
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.24 E-value=0.0021 Score=61.16 Aligned_cols=126 Identities=15% Similarity=0.083 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q psy10478 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293 (451)
Q Consensus 214 ~~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~ 293 (451)
..|+..|.+++......+.+++||++..+..+-+..+|...++....+.|.....++ +. .++...+-+.|.+.+-
T Consensus 108 SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~~ 182 (328)
T 3hgt_A 108 SGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGIN 182 (328)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCC
T ss_pred CccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCCC
Confidence 567777888877776688999999999999999999999999999999998654322 21 2455666666877777
Q ss_pred ccc-----cCCccEEEEeCCCCCHHH-HHHHhcccCCCC----CCcEEEEEeecccHHHHh
Q psy10478 294 GID-----KPDVRCVIHYGAPKDLSA-YYQEIGRAGRDG----LSSVCYTFYKTADFTKNN 344 (451)
Q Consensus 294 GiD-----~p~v~~VI~~~~p~s~~~-y~Qr~GRagR~g----~~g~~i~l~~~~d~~~~~ 344 (451)
|+| ....+.||.||...++.. .+|.+-|+.|.| ++-..+-++...-.+...
T Consensus 183 gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 183 FTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp TTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHH
T ss_pred CcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHH
Confidence 886 678899999999988776 488887877763 344567777766655544
No 95
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.18 E-value=0.047 Score=58.58 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=67.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-FGMGIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiD~p~v~~VI 304 (451)
.+.+++|.++|+.-+.+.++.+.+. ++.+..+||+++..+|....+.+.+|..+|+|+|.. +...+++.++++||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 4679999999999999888877654 789999999999999999999999999999999964 44567888999888
Q ss_pred EeCC
Q psy10478 305 HYGA 308 (451)
Q Consensus 305 ~~~~ 308 (451)
.=..
T Consensus 496 IDEa 499 (780)
T 1gm5_A 496 IDEQ 499 (780)
T ss_dssp EESC
T ss_pred eccc
Confidence 5433
No 96
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.99 E-value=0.069 Score=52.63 Aligned_cols=78 Identities=10% Similarity=0.176 Sum_probs=65.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH---CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc----cccccCCccE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR---NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG----MGIDKPDVRC 302 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~---~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~----~GiD~p~v~~ 302 (451)
.+.++||.++++.-+.++++.+++ .++.+..+||+.+..++....+.+..|..+|+|+|.-.- .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 678999999999999999999998 578999999999999999999999999999999995321 1255668888
Q ss_pred EEEeC
Q psy10478 303 VIHYG 307 (451)
Q Consensus 303 VI~~~ 307 (451)
||.=.
T Consensus 143 iViDE 147 (414)
T 3oiy_A 143 VFVDD 147 (414)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 87533
No 97
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.22 E-value=0.15 Score=56.93 Aligned_cols=77 Identities=9% Similarity=0.152 Sum_probs=66.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH---CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cccccccCCcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR---NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FGMGIDKPDVR 301 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~---~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~GiD~p~v~ 301 (451)
.+.++||.++|+.-+.++++.+.+ .++.+..+||+++..+|....+.+.+|..+|+|+|.- +.. ++..+++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 678999999999999999999998 4678999999999989999999999999999999952 222 5667889
Q ss_pred EEEEeC
Q psy10478 302 CVIHYG 307 (451)
Q Consensus 302 ~VI~~~ 307 (451)
+||.=.
T Consensus 199 ~lViDE 204 (1104)
T 4ddu_A 199 FVFVDD 204 (1104)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 888633
No 98
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.35 E-value=0.3 Score=54.88 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=65.8
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-ccccccccCCccEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-AFGMGIDKPDVRCVI 304 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-~~~~GiD~p~v~~VI 304 (451)
.+.+++|.|+|+.-+.+.++.+.+. ++.+..+++..+..++....+.+.+|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 5779999999999999988888753 67899999999999999999999999999999994 555668888888887
Q ss_pred E
Q psy10478 305 H 305 (451)
Q Consensus 305 ~ 305 (451)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 99
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.05 E-value=1.3 Score=38.96 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=53.1
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----c-ccccccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----F-GMGIDKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~-~~GiD~p~ 299 (451)
+.++||.|+++.-+.++++.+++. +..+..++|+.+..++.. .+.++..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 458999999999999998888765 688999999998765543 345567789999952 1 12345566
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666664
No 100
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.56 E-value=0.74 Score=46.91 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=55.4
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+.+||.++++.-+....+.|.+.|+.+..+||+.+..++..+...+..|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999999999999999999999995
No 101
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=89.47 E-value=0.025 Score=58.75 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=36.4
Q ss_pred cccCCCeeEEEeCccccccchhh--HhhhhhhhhhhcccceeccccCCCCcchhhc
Q psy10478 57 KCCDNCRQVVYMTPEYVTNNTSF--LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRC 110 (451)
Q Consensus 57 ~~~~~~~~vl~~tPe~l~~~~~~--~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~ 110 (451)
.+..++.+|+|+||++++....- ...+..+.++++||+|+...|| |++.+..
T Consensus 145 ~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~g--f~~~~~~ 198 (579)
T 3sqw_A 145 KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG--FRDDLET 198 (579)
T ss_dssp HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT--THHHHHH
T ss_pred HHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCC--CHHHHHH
Confidence 34445679999999999763311 2345667788999999998887 5555433
No 102
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.24 E-value=0.68 Score=48.02 Aligned_cols=60 Identities=25% Similarity=0.310 Sum_probs=54.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHh--hcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLF--VKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f--~~g~~~iLVaT~ 289 (451)
..+.+||.++++.-++...+.|.+.|+.+..++|+++..++..+...+ ..+..+|+++|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 356899999999999999999999999999999999999999988888 578899999997
No 103
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.19 E-value=1.5 Score=39.44 Aligned_cols=72 Identities=8% Similarity=0.053 Sum_probs=53.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccc-cccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFG-MGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~-~GiD~p~ 299 (451)
.+.++||.++|+.-+.++++.+++. ++.+..++|+.+.......+. + ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 4678999999999999988777653 788999999998776655443 2 478999994 222 2346677
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777764
No 104
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=88.54 E-value=0.031 Score=57.67 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=36.2
Q ss_pred cccCCCeeEEEeCccccccchh-h-HhhhhhhhhhhcccceeccccCCCCcchhhc
Q psy10478 57 KCCDNCRQVVYMTPEYVTNNTS-F-LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRC 110 (451)
Q Consensus 57 ~~~~~~~~vl~~tPe~l~~~~~-~-~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~ 110 (451)
.+..+..+|+|+||++++.... . ...+..+.++++||+|+...|+ |++.+..
T Consensus 196 ~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~--f~~~~~~ 249 (563)
T 3i5x_A 196 KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG--FRDDLET 249 (563)
T ss_dssp HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT--THHHHHH
T ss_pred HHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccc--hHHHHHH
Confidence 3444567999999999976321 1 2245667889999999998887 5554433
No 105
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.94 E-value=3 Score=37.59 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=53.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cc--cccccC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FG--MGIDKP 298 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~--~GiD~p 298 (451)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+...+...+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4567999999999999998887764 78899999998866544333 356789999942 21 345667
Q ss_pred CccEEEE
Q psy10478 299 DVRCVIH 305 (451)
Q Consensus 299 ~v~~VI~ 305 (451)
++++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 7777764
No 106
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.59 E-value=1.4 Score=39.24 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=49.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----ccc--ccccC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FGM--GIDKP 298 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~--GiD~p 298 (451)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+.......+ +..+|+|+|.- +.. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 5678999999999999999988875 47888999997755443322 45789999952 112 24555
Q ss_pred CccEEEE
Q psy10478 299 DVRCVIH 305 (451)
Q Consensus 299 ~v~~VI~ 305 (451)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6666654
No 107
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=86.53 E-value=1.9 Score=38.29 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=52.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----c-ccccccC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----F-GMGIDKP 298 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~-~~GiD~p 298 (451)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+..++...+ ...+|+|+|.- + ...++..
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 5678999999999999999988864 67789999999876654433 35789999952 1 1234556
Q ss_pred CccEEEE
Q psy10478 299 DVRCVIH 305 (451)
Q Consensus 299 ~v~~VI~ 305 (451)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6666654
No 108
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=85.83 E-value=2.5 Score=36.56 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=51.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC--CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccc-cccccCCcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN--GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFG-MGIDKPDVR 301 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~--~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~-~GiD~p~v~ 301 (451)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+.......+. ...+|+|+|. .+. ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 5678999999999999999999876 467888999887654433332 2468999995 122 234556677
Q ss_pred EEEE
Q psy10478 302 CVIH 305 (451)
Q Consensus 302 ~VI~ 305 (451)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 109
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=85.64 E-value=2.7 Score=36.32 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=50.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----ccc-ccccC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FGM-GIDKP 298 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~-GiD~p 298 (451)
.+.++||.++++.-+.++++.+.+. +..+..++|+.+..+.... + .+..+|+|+|.- +.. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 4568999999999999998888764 5778889999876544322 2 356789999952 222 23455
Q ss_pred CccEEEE
Q psy10478 299 DVRCVIH 305 (451)
Q Consensus 299 ~v~~VI~ 305 (451)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 6666654
No 110
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.22 E-value=1.8 Score=38.74 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=45.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cccc-ccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGM-GIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p~ 299 (451)
.+.++||.++++.-+.++++.+++. +..+..++|+.+... ....+..+..+|+|+|. .+.. .++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4678999999999999999988865 567778888765432 23345567789999993 3333 245566
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 776664
No 111
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.15 E-value=3 Score=39.94 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=55.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-c-----ccccccC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-F-----GMGIDKP 298 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~-----~~GiD~p 298 (451)
.+.++||.|+++.-++++++.+.+. ++.+..++|+.+...... .+.++..+|+|+|.- + ...++..
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 4568999999999999998888765 788999999998765544 344577789999942 1 2335667
Q ss_pred CccEEEE
Q psy10478 299 DVRCVIH 305 (451)
Q Consensus 299 ~v~~VI~ 305 (451)
++++||.
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 7888774
No 112
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.03 E-value=2.2 Score=37.74 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=48.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC---CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc------cccccccCCc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN---GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA------FGMGIDKPDV 300 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~---~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~------~~~GiD~p~v 300 (451)
.+.++||.++|+.-+.++++.+.+. ++.+..++|+.+...+...+ . ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 5778999999999999999999874 67888899987755443322 2 34789999941 1224556667
Q ss_pred cEEEE
Q psy10478 301 RCVIH 305 (451)
Q Consensus 301 ~~VI~ 305 (451)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 76664
No 113
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=83.51 E-value=3.6 Score=37.41 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=52.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccc--cccccC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFG--MGIDKP 298 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~--~GiD~p 298 (451)
.+.++||.++|+.-+.++++.+++. +..+..++|+......... +..+ .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 5678999999999999999988874 5677888998876554433 3334 78999994 121 246677
Q ss_pred CccEEEE
Q psy10478 299 DVRCVIH 305 (451)
Q Consensus 299 ~v~~VI~ 305 (451)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7887764
No 114
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=83.25 E-value=3.2 Score=37.29 Aligned_cols=72 Identities=10% Similarity=0.024 Sum_probs=51.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cc-cccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FG-MGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~-~GiD~p~ 299 (451)
.+.++||.++|+.-+.++++.+.+. ++.+..++|+.+.......+ ....+|+|+|.- +. ..+++.+
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 174 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEF 174 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhh
Confidence 4568999999999999998888764 56788889988765443322 346789999952 12 2346667
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 175 ~~~lVi 180 (253)
T 1wrb_A 175 CKYIVL 180 (253)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777764
No 115
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=82.96 E-value=0.36 Score=45.37 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=27.2
Q ss_pred CCeeEEEeCccccccchhh--Hhhhhhhhhhhcccceeccc
Q psy10478 61 NCRQVVYMTPEYVTNNTSF--LSRIPRIVLIAIDEAHCVSQ 99 (451)
Q Consensus 61 ~~~~vl~~tPe~l~~~~~~--~~~l~~~~~~~~de~~~~~~ 99 (451)
...+|+|+||++++....- .-.+..+.++++||+|....
T Consensus 209 ~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 249 (300)
T ss_dssp CCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhh
Confidence 4568999999999652200 11256778899999997653
No 116
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=82.50 E-value=2 Score=33.34 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=33.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
.+.++++||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 6788999999999999999999999999999999864
No 117
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=80.26 E-value=3.7 Score=40.46 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=53.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-cccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGMG-IDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~ 299 (451)
.+.++||.++|++-+.++++.+++. ++.+..++|+.+..++...+ ....+|+|+|. .+.++ +++.+
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~ 203 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFED 203 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTT
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCccccc
Confidence 3668999999999999999988864 56788899999876554332 24578999994 23333 46677
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
++++|.
T Consensus 204 ~~~lVl 209 (434)
T 2db3_A 204 TRFVVL 209 (434)
T ss_dssp CCEEEE
T ss_pred CCeEEE
Confidence 888774
No 118
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=79.22 E-value=2.7 Score=36.89 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=44.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc------ccccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAF------GMGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p~ 299 (451)
.+.++||.++++.-+.++++.+.+. ++.+..++|+.+..+.... +. ..+|+|+|.-. ...++..+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 5678999999999999998888764 6788899998765544332 22 27899999521 22344556
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666653
No 119
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.65 E-value=1.4 Score=39.62 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=49.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cccc---cccc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGM---GIDK 297 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~---GiD~ 297 (451)
.+.++||.++|+.-+.++++.+.+. ++.+..++|+..... .......+..+|+|+|. .+.. ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 5668999999999999999988875 566776666532211 11223356678999993 2222 4677
Q ss_pred CCccEEEE
Q psy10478 298 PDVRCVIH 305 (451)
Q Consensus 298 p~v~~VI~ 305 (451)
.++++||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 77877774
No 120
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=77.76 E-value=0.82 Score=46.90 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=14.3
Q ss_pred cccEEEEccccccccCCC
Q psy10478 131 RIVLIAIDEAHCVSQWGH 148 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~ 148 (451)
+..++||||||.+.+ ..
T Consensus 173 ~~~~vIiDEAHnl~d-~~ 189 (551)
T 3crv_A 173 REYMIVIDEAHNLDK-VN 189 (551)
T ss_dssp TTEEEEETTGGGGGG-GG
T ss_pred CCeEEEEecccchHH-HH
Confidence 567999999999987 53
No 121
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=77.10 E-value=2.2 Score=37.43 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=48.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC--------CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cccc-cc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN--------GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGM-GI 295 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~--------~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-Gi 295 (451)
.+.++||.++|+.-+.++++.+.+. ++.+..++|+.+..+..+ .+ .+..+|+|+|. .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 4578999999999999998887754 577888899875433211 11 24567999994 2222 34
Q ss_pred ccCCccEEEE
Q psy10478 296 DKPDVRCVIH 305 (451)
Q Consensus 296 D~p~v~~VI~ 305 (451)
+..++++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 5566666654
No 122
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.46 E-value=3.7 Score=45.54 Aligned_cols=74 Identities=12% Similarity=0.238 Sum_probs=57.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CC----CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccccc-cCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GI----QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-FGMGID-KPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~----~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~GiD-~p~ 299 (451)
.+.++||.++|+.-+.++++.+.+. ++ .+..+||+.+..++....+.+.+ .+|+|+|.- +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 5789999999999999998888754 56 78999999999888888887777 899999952 111111 456
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 123
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.39 E-value=7.9 Score=37.79 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=54.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-CC---CeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cc-----cccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-GI---QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-FG-----MGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-~~---~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~-----~GiD~p~ 299 (451)
.+.++||.|+++.-+.+.++.+.+. +. .+..+||+....++..... ..+|+|+|.- +. ..++..+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 6789999999999999999988876 55 8999999999877655433 3579999942 11 2355677
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888775
No 124
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=76.33 E-value=3.5 Score=32.89 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=32.8
Q ss_pred CC-CcEEEEc-CChhHHHHHHHHHHHCCCCeeeecCCCCH
Q psy10478 230 FE-GSTIIYC-PTKVICEKVCDVLSRNGIQNRPYHAHISL 267 (451)
Q Consensus 230 ~~-~~~iVF~-~t~~~~~~l~~~L~~~~~~v~~~h~~l~~ 267 (451)
.+ .+++||| .+-..+...+..|+..|+.+..+.||+..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 44 7899999 57788889999999999999999999754
No 125
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=76.00 E-value=2 Score=32.70 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=33.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
+..++++||.+-..+...+..|.+.|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 5678999999999999999999999998888999853
No 126
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=75.94 E-value=8.2 Score=37.21 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=51.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cccc-ccccCCcc
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGM-GIDKPDVR 301 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p~v~ 301 (451)
.++||.++|+.-+.++++.+.+. ++.+..++|+.+..+....+ ....+|+|+|. .+.. .+++.+++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL----ERGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh----hCCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 67999999999999998888763 67889999998876544322 23568999995 2222 24566777
Q ss_pred EEEE
Q psy10478 302 CVIH 305 (451)
Q Consensus 302 ~VI~ 305 (451)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 127
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=75.47 E-value=3.9 Score=31.43 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=32.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 5678999999999999999999999985 888888864
No 128
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=75.32 E-value=1.9 Score=32.96 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=33.0
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
++.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 6678999999998999999999999998888988853
No 129
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=75.19 E-value=2 Score=33.20 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHI 265 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l 265 (451)
++.+++|||.+-..+...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 677899999999889999999999999988888885
No 130
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=74.86 E-value=2.7 Score=31.46 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=31.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 232 GSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 232 ~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
.++++||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 88999999998899999999999998888888864
No 131
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=74.38 E-value=8.3 Score=36.74 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----c-ccccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----F-GMGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~-~~GiD~p~ 299 (451)
.+.++||.|+++.-+.++++.+.+. ++.+..++|+.+..+...... ..+|+|+|.- + ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 5679999999999999998888763 678999999998766555443 3579999942 1 22345567
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 132
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=72.23 E-value=4.7 Score=30.96 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~~ 267 (451)
++.+++|||.+-..+...+..|...|+. +..+.||+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 6788999999988999999999999985 8888998653
No 133
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=71.56 E-value=3.5 Score=32.77 Aligned_cols=47 Identities=15% Similarity=0.040 Sum_probs=36.0
Q ss_pred HHHHHHhhccCCCCcEEEEcCChhH--HHHHHHHHHHCCCCeeeecCCCC
Q psy10478 219 DLRKLTNFENQFEGSTIIYCPTKVI--CEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 219 ~L~~~l~~~~~~~~~~iVF~~t~~~--~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
.+...+... .++.+++|||.+-.. +...+..|...|+.+..+.||+.
T Consensus 60 ~l~~~~~~l-~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 60 DLATRIGEL-DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHHGGGS-CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHHhcC-CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 344444332 357789999999776 88999999999999888889864
No 134
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=70.86 E-value=1.4 Score=44.99 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=12.7
Q ss_pred cccEEEEcccccccc
Q psy10478 131 RIVLIAIDEAHCVSQ 145 (451)
Q Consensus 131 ~l~~vViDEah~~~~ 145 (451)
+..++||||||.+..
T Consensus 175 ~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 175 EDYLIVIDEAHNLLE 189 (540)
T ss_dssp GGEEEEETTGGGGGG
T ss_pred CCCEEEEEccccHHH
Confidence 578999999999943
No 135
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=70.46 E-value=14 Score=35.40 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=52.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cccc-ccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGM-GIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p~ 299 (451)
.+.++||.++++.-+.++++.+.+. ++.+..++|+....+....+. ...+|+|+|. .+.. .++..+
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 5679999999999999999988764 577888999988766544332 2458999994 3333 355667
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 787774
No 136
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=69.85 E-value=13 Score=35.62 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=52.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cccc-ccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGM-GIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p~ 299 (451)
.+.++||.++++.-+.++++.+.+. ++.+..++|+......... ..+..+|+|+|. .+.. ..++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 4568999999999999998888764 6788889999875543221 246678999994 2233 356677
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 137
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=69.36 E-value=16 Score=34.14 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=51.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cc-cccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FG-MGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~-~GiD~p~ 299 (451)
.+.++||.++++.-++++++.+.+. ++.+..++|+........... ..+|+|+|.- +. ..+++.+
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 5678999999999999999888864 677888999987655443332 4689999942 11 2245667
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777764
No 138
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=68.18 E-value=5.7 Score=32.55 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=31.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
...+++|||.+-..+...+..|...|+ .+..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 668899999998888899999999998 5889999974
No 139
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=67.60 E-value=6.8 Score=30.24 Aligned_cols=37 Identities=5% Similarity=0.085 Sum_probs=32.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
++.+++|||.+-..+...+..|...|+....+.||+.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 6788999999999999999999999986677889864
No 140
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=67.57 E-value=1.3 Score=46.90 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=29.9
Q ss_pred CCeeEEEeCccccccchhhH-hhhhhhhhhhcccceeccccC
Q psy10478 61 NCRQVVYMTPEYVTNNTSFL-SRIPRIVLIAIDEAHCVSQWG 101 (451)
Q Consensus 61 ~~~~vl~~tPe~l~~~~~~~-~~l~~~~~~~~de~~~~~~~~ 101 (451)
+..+|+|+||+++....... ..+.+++++++||+|....++
T Consensus 113 ~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 113 GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 36899999999997632111 236778889999999876544
No 141
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=66.91 E-value=10 Score=27.50 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=29.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
+..++++||.+-..+...+..|.+.|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 6788999999988899999999999985 5555 7754
No 142
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=66.29 E-value=7.5 Score=31.68 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=32.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 6678999999999999999999999985 788888854
No 143
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=65.33 E-value=1.1 Score=47.59 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=29.5
Q ss_pred CCeeEEEeCccccccchhhH-hhhhhhhhhhcccceeccccC
Q psy10478 61 NCRQVVYMTPEYVTNNTSFL-SRIPRIVLIAIDEAHCVSQWG 101 (451)
Q Consensus 61 ~~~~vl~~tPe~l~~~~~~~-~~l~~~~~~~~de~~~~~~~~ 101 (451)
++.+|+|+||+++....... ..+.+++++++||+|+...++
T Consensus 113 ~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (720)
T 2zj8_A 113 GKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRD 154 (720)
T ss_dssp GGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT
T ss_pred CCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCc
Confidence 46899999999997532111 236677889999999876543
No 144
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=65.09 E-value=4.7 Score=32.69 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=32.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
.+.+++|||.+-..+...+..|...|+ .+..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 678999999998889999999999998 5889999964
No 145
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=64.75 E-value=5.5 Score=40.05 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=50.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cccc-c-ccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FGMG-I-DKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-i-D~p~ 299 (451)
+.++||.|+++.-+.+..+.+.+. ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 788999999999998888877765 899999999986554432221 23679999942 2222 2 5667
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788775
No 146
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=64.70 E-value=7.3 Score=40.32 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=22.5
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEee
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTAT 175 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT 175 (451)
.++++|||||+++. .+.+..|.. ...++.+++++.-.
T Consensus 262 ~~d~lIIDEAsml~------~~~~~~Ll~--~l~~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEASMID------LPMMSRLID--ALPDHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGGGCB------HHHHHHHHH--TCCTTCEEEEEECT
T ss_pred CCCEEEEechhhCC------HHHHHHHHH--hCCCCCEEEEEcch
Confidence 68999999999663 233344422 22345677776543
No 147
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=64.62 E-value=18 Score=38.74 Aligned_cols=54 Identities=7% Similarity=0.098 Sum_probs=44.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH----CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR----NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~----~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+..++|.++|+.-|.+.++++.. .|+.+..+.|+++..+|.... ..+|+++|+
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 567899999999999988877765 489999999999987766543 268999995
No 148
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=64.52 E-value=16 Score=39.06 Aligned_cols=54 Identities=6% Similarity=0.004 Sum_probs=43.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH----CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR----NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~----~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+.+++|.++|+.-|.+.++++.. .|+.+..+.|+++...|.... ..+|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 567899999999999888777764 489999999999987665443 268999996
No 149
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=64.48 E-value=9.1 Score=40.94 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cccc-c-ccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FGMG-I-DKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-i-D~p~ 299 (451)
++++||.|+++.-+.+....+.+. ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 789999999999999988887765 899999999987655433221 35789999942 2222 3 5667
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788874
No 150
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=64.45 E-value=12 Score=37.55 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cccc-c-ccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FGMG-I-DKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-i-D~p~ 299 (451)
+.++||.|+++.-+.+..+.+.+. ++.+..+||+.+...+...+. ...+|+|+|.- +..| + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 788999999999999888888765 899999999987655433221 23679999942 2222 3 5677
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888875
No 151
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.33 E-value=21 Score=34.18 Aligned_cols=73 Identities=8% Similarity=0.151 Sum_probs=52.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cccc-ccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGM-GIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~-GiD~p~ 299 (451)
.+.++||.++++.-+.++++.+.+. +..+..++|+...... ...+..+..+|+|+|. .+.. .++..+
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 5678999999999999999888764 5677778888764433 3455567889999994 2222 345666
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777764
No 152
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=64.05 E-value=4.6 Score=33.08 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=32.6
Q ss_pred CCCcEEEEcCCh--hHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTK--VICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~--~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
.+.+++|||.+- ..+...+..|+..|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 567899999997 5889999999999999999999964
No 153
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=63.14 E-value=7.9 Score=40.49 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=50.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-c-ccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGMG-I-DKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-i-D~p~ 299 (451)
++++||.++|+.-+.+..+.+.+. ++.+..++|+.+...+...+. ...+|+|+|. .+..| + ++.+
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~ 136 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSI 136 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 378999999999999888888765 789999999986533322221 2478999994 22333 3 5677
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 137 ~~~vVi 142 (696)
T 2ykg_A 137 FTLMIF 142 (696)
T ss_dssp CSEEEE
T ss_pred ccEEEE
Confidence 888875
No 154
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=62.97 E-value=4.5 Score=32.38 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=32.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.+++|||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 6789999999988899999999999985 888999974
No 155
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=62.70 E-value=5.5 Score=32.17 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.+++|||.+-..+...+..|.+.|+. +..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 5678999999988899999999999985 888899864
No 156
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=62.37 E-value=2 Score=45.38 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=28.7
Q ss_pred CeeEEEeCccccccchhhH-hhhhhhhhhhcccceecccc
Q psy10478 62 CRQVVYMTPEYVTNNTSFL-SRIPRIVLIAIDEAHCVSQW 100 (451)
Q Consensus 62 ~~~vl~~tPe~l~~~~~~~-~~l~~~~~~~~de~~~~~~~ 100 (451)
+.+|+|+||+++....... ..+.+++++++||+|....+
T Consensus 121 ~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~ 160 (715)
T 2va8_A 121 NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDP 160 (715)
T ss_dssp GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCT
T ss_pred CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCc
Confidence 6899999999997632111 23677888999999986543
No 157
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=62.15 E-value=5 Score=32.37 Aligned_cols=37 Identities=8% Similarity=0.176 Sum_probs=32.7
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.+++|||.+-..+..++..|...|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 6788999999988899999999999985 889999864
No 158
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=61.62 E-value=5.3 Score=34.51 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=35.4
Q ss_pred CCCcEEEEcCChhHHHH-HHHHHHHC---CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEK-VCDVLSRN---GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~-l~~~L~~~---~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+.++||.|+++.-+++ +.+.+.+. ++.+..++|+.....+..... +..+|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 46799999999998887 55555543 678888888765332221111 2367888884
No 159
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=60.53 E-value=35 Score=26.09 Aligned_cols=57 Identities=5% Similarity=-0.016 Sum_probs=39.3
Q ss_pred CCCcEEEEcC------ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 230 FEGSTIIYCP------TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 230 ~~~~~iVF~~------t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
...+++||.. ....|..+.++|.+.|+....+.=...+..+....+......++.++
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if 78 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 78 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 4568999998 49999999999999998877665444555555554433333444443
No 160
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=60.21 E-value=16 Score=33.75 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=50.9
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cc-cccccCCc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FG-MGIDKPDV 300 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~-~GiD~p~v 300 (451)
+.++||.++++.-+.++++.+.+. +..+..+||+.+....... +. ..+|+|+|.- +. ..++..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999999988863 5788899999887654432 22 3689999942 12 23456677
Q ss_pred cEEEE
Q psy10478 301 RCVIH 305 (451)
Q Consensus 301 ~~VI~ 305 (451)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77764
No 161
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=60.05 E-value=4 Score=37.42 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=27.7
Q ss_pred CCeeEEEeCccccccchhhHhhhhhhhhhhcccceecc
Q psy10478 61 NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVS 98 (451)
Q Consensus 61 ~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~ 98 (451)
+..+|+++||+.+.... ...+..+.++++||+|...
T Consensus 203 ~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 203 NDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLAT 238 (282)
T ss_dssp TTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGGCC
T ss_pred cCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCccCC
Confidence 45789999999987653 2346677889999999664
No 162
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=59.01 E-value=2 Score=41.56 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=27.4
Q ss_pred CCCeeEEEeCccccccchhh--Hhhhhhhhhhhcccceeccc
Q psy10478 60 DNCRQVVYMTPEYVTNNTSF--LSRIPRIVLIAIDEAHCVSQ 99 (451)
Q Consensus 60 ~~~~~vl~~tPe~l~~~~~~--~~~l~~~~~~~~de~~~~~~ 99 (451)
....+|+|+||+++...... .-.+..+.++++||+|....
T Consensus 141 ~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~ 182 (412)
T 3fht_A 141 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 182 (412)
T ss_dssp CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHS
T ss_pred cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhh
Confidence 34568999999999653201 11235677899999997644
No 163
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=58.94 E-value=21 Score=38.38 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH----CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR----NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~----~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+.+++|.++|+.-|.+.++++.. .|+.+..+.|+++..+|.... ..+|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 567899999999999888777764 489999999999987776544 268999996
No 164
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=58.66 E-value=7.4 Score=31.28 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=32.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.+++|||.+-..+...+..|.+.|+. +..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 5688999999988889999999999985 888889984
No 165
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=58.62 E-value=1.8 Score=38.69 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=28.2
Q ss_pred CCCeeEEEeCccccccchhhHhhhhhhhhhhccccee
Q psy10478 60 DNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHC 96 (451)
Q Consensus 60 ~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~ 96 (451)
.++.+|+|+||++++.. +...+.++.++++||+|.
T Consensus 153 ~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~ 187 (235)
T 3llm_A 153 RPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHE 187 (235)
T ss_dssp CSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTS
T ss_pred CCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCcc
Confidence 35689999999999864 334578888999999994
No 166
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=58.59 E-value=21 Score=38.61 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=44.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHH----CCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSR----NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~----~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+.+++|.++|+.-|.+.++++.. .|+.+..+.|+++..+|.... ..+|+++|+
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 567899999999988888777665 489999999999987777654 368999995
No 167
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=58.57 E-value=37 Score=26.03 Aligned_cols=103 Identities=16% Similarity=0.230 Sum_probs=61.4
Q ss_pred EEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc--ccccc-----ccCCccEEEEe
Q psy10478 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA--FGMGI-----DKPDVRCVIHY 306 (451)
Q Consensus 234 ~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~--~~~Gi-----D~p~v~~VI~~ 306 (451)
.+||...-.-...+...++..|+.+..++++.+...|.+-++.|.....++--..+- +...| -.|.+++|+..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 356777777777788888888888888888888888888888887665544332221 11111 24666666554
Q ss_pred CCCC--CHHHHHHHhcccCCCCCCcEEEEEeecccHH
Q psy10478 307 GAPK--DLSAYYQEIGRAGRDGLSSVCYTFYKTADFT 341 (451)
Q Consensus 307 ~~p~--s~~~y~Qr~GRagR~g~~g~~i~l~~~~d~~ 341 (451)
.... -+.+|+..+-- . .-..++.|+..|-.
T Consensus 85 ttddkewikdfieeake---r--gvevfvvynnkddd 116 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAKE---R--GVEVFVVYNNKDDD 116 (162)
T ss_dssp ECCCHHHHHHHHHHHHH---T--TCEEEEEEECSCHH
T ss_pred ecCcHHHHHHHHHHHHh---c--CcEEEEEecCCCch
Confidence 3322 23445544421 1 13456666665543
No 168
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=57.52 E-value=51 Score=25.28 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=42.6
Q ss_pred HHHHHHHhhccCCCCcEEEEc------CChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 218 ADLRKLTNFENQFEGSTIIYC------PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 218 ~~L~~~l~~~~~~~~~~iVF~------~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
+.+..++ ...+++||. ++...|..+.++|.+.|+....+.=..+++.+....+.-....++.++
T Consensus 7 ~~v~~~i-----~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 7 LRLKKLT-----HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp HHHHHHH-----TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHH-----hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 4455555 456899999 578999999999999998877665555565555554432233444443
No 169
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=52.02 E-value=59 Score=24.31 Aligned_cols=55 Identities=7% Similarity=0.169 Sum_probs=38.6
Q ss_pred CcEEEEc------CChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 232 GSTIIYC------PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 232 ~~~iVF~------~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
.+++||. ++...|..+...|.+.++....+.-...+..+....+.+....++.++
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 4688897 578899999999999988877776665666666655554334444443
No 170
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=51.72 E-value=12 Score=41.80 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=50.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEc-----cccccc-cccCCccEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT-----CAFGMG-IDKPDVRCV 303 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT-----~~~~~G-iD~p~v~~V 303 (451)
.++++||.++++.-+.+.++.+.+....+..++|+.+ .++..+|+|+| +.+..| ..+.++++|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 6789999999999999999999987668899999986 34678899999 344443 235566776
Q ss_pred EE
Q psy10478 304 IH 305 (451)
Q Consensus 304 I~ 305 (451)
|.
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 171
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=51.50 E-value=13 Score=34.64 Aligned_cols=45 Identities=4% Similarity=0.083 Sum_probs=27.3
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
++.+++||||||.+.. .....+.+..+.+|...++.+.++-+...
T Consensus 81 ~~~kvviIdead~lt~------~a~naLLk~LEep~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQ------QAANAFLKALEEPPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp SSSEEEEETTGGGBCH------HHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEeccHHHhCH------HHHHHHHHHHhCCCCCeEEEEEECChHhC
Confidence 4678999999999853 22344444555555555555555544333
No 172
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=50.90 E-value=67 Score=23.13 Aligned_cols=60 Identities=7% Similarity=0.088 Sum_probs=39.8
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCC--hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHh
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPT--KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLF 277 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t--~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f 277 (451)
.+.+.++++.....+++.+||++. ...+.+....-++.|+....+.+.- +++-.+-...|
T Consensus 37 sqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstd-peeltqrvref 98 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTD-PEELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCC-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCC-HHHHHHHHHHH
Confidence 345666666666688899999985 5566777777777788777776654 44444444444
No 173
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=49.87 E-value=14 Score=40.24 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=47.3
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cccc-c-ccCC
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-----FGMG-I-DKPD 299 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-----~~~G-i-D~p~ 299 (451)
++++||.++++.-+.+....+.+. ++.+..+||+.+...+...+. +..+|+|+|.- +..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 788999999999998888877764 899999999987654332221 23679999942 2222 2 4566
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788774
No 174
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=49.45 E-value=4.5 Score=42.42 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=48.5
Q ss_pred CCCcEEEEcCChhHHHHH-HHHHHHCC---CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-c-----------cc
Q psy10478 230 FEGSTIIYCPTKVICEKV-CDVLSRNG---IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-F-----------GM 293 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l-~~~L~~~~---~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~-----------~~ 293 (451)
.++++||.++++.-+.+. ++.|++.. +.+..+||+.+..++...+. +..+|+|+|.- + ..
T Consensus 55 ~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~ 130 (699)
T 4gl2_A 55 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDA 130 (699)
T ss_dssp CCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhcccccccc
Confidence 348899999999999888 88887753 78999999987554433222 56789999942 2 22
Q ss_pred ccccCCccEEEE
Q psy10478 294 GIDKPDVRCVIH 305 (451)
Q Consensus 294 GiD~p~v~~VI~ 305 (451)
.+...++++||.
T Consensus 131 ~~~~~~~~lvVi 142 (699)
T 4gl2_A 131 GVQLSDFSLIII 142 (699)
T ss_dssp CCCGGGCSEEEE
T ss_pred ceecccCcEEEE
Confidence 356778888874
No 175
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=49.04 E-value=18 Score=32.94 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=37.9
Q ss_pred HHHHHHhh-ccCCCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCCH
Q psy10478 219 DLRKLTNF-ENQFEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHISL 267 (451)
Q Consensus 219 ~L~~~l~~-~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~~ 267 (451)
.+..++.. ....+.++++||.+-..+...+..|...|+ .+..|.|++..
T Consensus 217 ~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 217 ELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp HHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred HHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 44444432 223678899999998889999999999998 48899999864
No 176
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=47.48 E-value=21 Score=35.56 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCC----CCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccc--cccCCccE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNG----IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA-FGMG--IDKPDVRC 302 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~----~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~-~~~G--iD~p~v~~ 302 (451)
..+++||.|+++.-+.+..+.+.+.+ ..+..++|+.+..++ ..+..+|+|+|.- +... ..+.++++
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~l 228 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGM 228 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCE
Confidence 44599999999999999999998762 467888998776543 3577899999952 2222 34567777
Q ss_pred EEEe
Q psy10478 303 VIHY 306 (451)
Q Consensus 303 VI~~ 306 (451)
||.=
T Consensus 229 iIiD 232 (510)
T 2oca_A 229 MMND 232 (510)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7753
No 177
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=46.99 E-value=10 Score=33.04 Aligned_cols=14 Identities=29% Similarity=0.218 Sum_probs=11.9
Q ss_pred cccEEEEccccccc
Q psy10478 131 RIVLIAIDEAHCVS 144 (451)
Q Consensus 131 ~l~~vViDEah~~~ 144 (451)
+-.+|||||||.+.
T Consensus 87 ~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 87 IGSIVIVDEAQDVW 100 (199)
T ss_dssp TTCEEEETTGGGTS
T ss_pred CceEEEEEChhhhc
Confidence 46799999999984
No 178
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=45.90 E-value=1.3e+02 Score=24.95 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=48.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccccCCccEEEEeCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA 308 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD~p~v~~VI~~~~ 308 (451)
..+.+.|.|++..++..+.+.|.+.|+++..+.++-. .+ .-.|.|.|--.+.|+-++ .||.+++
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~KGlEf~---~V~~~~~ 123 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFLAKGLEFD---AVIVWNA 123 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGGCTTCCEE---EEEEETC
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccccCCcCCC---EEEEecC
Confidence 4577899999999999999999999988877765431 12 236999999999998764 5555554
No 179
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=45.59 E-value=25 Score=28.20 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=50.3
Q ss_pred ccCCCeeEEEeCccccccchhhHhhhhhhhhhhcccceeccccCCCCcchhhcccccccCCCCchhhhccccCcccEEEE
Q psy10478 58 CCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAI 137 (451)
Q Consensus 58 ~~~~~~~vl~~tPe~l~~~~~~~~~l~~~~~~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~vVi 137 (451)
+-+.+.+||++-.+...... +...|+..+..++.++..+ ...+..+.. ..+++|++
T Consensus 8 ~m~k~~rILiVDD~~~~r~~-l~~~L~~~G~~~v~~a~~g----------------------~~al~~~~~-~~~Dlill 63 (134)
T 3to5_A 8 ILNKNMKILIVDDFSTMRRI-VKNLLRDLGFNNTQEADDG----------------------LTALPMLKK-GDFDFVVT 63 (134)
T ss_dssp -CCTTCCEEEECSCHHHHHH-HHHHHHHTTCCCEEEESSH----------------------HHHHHHHHH-HCCSEEEE
T ss_pred HhCCCCEEEEEeCCHHHHHH-HHHHHHHcCCcEEEEECCH----------------------HHHHHHHHh-CCCCEEEE
Confidence 33456789999887766544 5555555433222222110 001111112 36889999
Q ss_pred ccccccccCCCCcHHHHHHHHHhhc--cCCCCCEEEEEeeCChHHHHH
Q psy10478 138 DEAHCVSQWGHDFRPSYRCLSELRL--PLPDVPILAVTATATPVVIDD 183 (451)
Q Consensus 138 DEah~~~~~g~~fr~~~~~l~~l~~--~~~~~~~v~lSAT~~~~~~~~ 183 (451)
|= .+.... -+.-+..++. ..++.|++++||....+....
T Consensus 64 D~--~MP~md-----G~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~ 104 (134)
T 3to5_A 64 DW--NMPGMQ-----GIDLLKNIRADEELKHLPVLMITAEAKREQIIE 104 (134)
T ss_dssp ES--CCSSSC-----HHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHH
T ss_pred cC--CCCCCC-----HHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHH
Confidence 83 233321 1223333443 346899999999887766543
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=45.34 E-value=23 Score=33.26 Aligned_cols=49 Identities=6% Similarity=0.078 Sum_probs=27.6
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
++..++||||||.+.. .....+.+..+.++...++.++++-+......+
T Consensus 107 ~~~kvviIdead~l~~------~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTD------AAANALLKTLEEPPAETWFFLATREPERLLATL 155 (334)
T ss_dssp SSCEEEEESCGGGBCH------HHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred CCcEEEEECchhhcCH------HHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 4678999999999853 223344444555444444455554433333333
No 181
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=45.33 E-value=29 Score=31.64 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=33.8
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~~ 267 (451)
.+.++++||.+-..+...+..|...|+ .+..+.||+..
T Consensus 180 kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 180 KDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 678999999999999999999999998 58889999753
No 182
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=44.17 E-value=15 Score=36.15 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=39.7
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
+.++||.|+++.-+.+..+.+.+.+.. +..+||+.. ...+|+|+|.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~-------------~~~~Ivv~T~ 179 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcC-------------CcCCEEEEEc
Confidence 679999999999999999999988888 999999875 2457888884
No 183
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=43.96 E-value=16 Score=30.14 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCCcEEEEcCCh---------hHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTK---------VICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~---------~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
...++||||.+- ..+..++..|...|+.+..+.||+.
T Consensus 92 ~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 92 FSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 367899999987 3578889999999999999999853
No 184
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=43.55 E-value=99 Score=24.01 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=41.2
Q ss_pred HHHHHHHHhhccCCCCcEEEEcC------ChhHHHHHHHHHHHCCCC---eeeecCCCCHHHHHHHHHHhhcCCceEE
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCP------TKVICEKVCDVLSRNGIQ---NRPYHAHISLKQRKEIHGLFVKDLIKVV 285 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~------t~~~~~~l~~~L~~~~~~---v~~~h~~l~~~~R~~~~~~f~~g~~~iL 285 (451)
.+.+..+++ ..+++||.. ....|..+.+.|.+.|+. ...+.-...++.+....+......++.+
T Consensus 6 ~~~v~~~i~-----~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~v 78 (121)
T 3gx8_A 6 RKAIEDAIE-----SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQL 78 (121)
T ss_dssp HHHHHHHHH-----SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHHhc-----cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 344555553 468999988 489999999999999887 5555545555555554443322334433
No 185
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=43.49 E-value=21 Score=31.62 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=38.2
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
+.+++|+|+++.-+.++.+.+.+.+.. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 678999999999999999999888888 888888764 2457888883
No 186
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=42.41 E-value=19 Score=32.65 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=32.8
Q ss_pred CCCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 229 QFEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 229 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.++.+++|||.+-..+...+..|...|+. +..|.|++.
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 36788999999988899999999999984 888999863
No 187
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=42.12 E-value=33 Score=31.22 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=37.1
Q ss_pred HHHHHHHhhc-cCCCCcEEEEcCChhHHHHHHHHHH-HCCC-CeeeecCCCC
Q psy10478 218 ADLRKLTNFE-NQFEGSTIIYCPTKVICEKVCDVLS-RNGI-QNRPYHAHIS 266 (451)
Q Consensus 218 ~~L~~~l~~~-~~~~~~~iVF~~t~~~~~~l~~~L~-~~~~-~v~~~h~~l~ 266 (451)
+.+...+... .....+++|||.+-..+...+..|. ..|+ .+..|.|++.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 3444555432 2367889999999888888999999 8898 5889999863
No 188
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=41.18 E-value=18 Score=31.91 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=32.8
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
.+.++++||.+-..+...+..|...|.++..|.|++.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 6788999999999999999999999977888999864
No 189
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=40.82 E-value=1.1e+02 Score=24.39 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcC------ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCP------TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~------t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
..+.+.+++.. .+++||.. ++..|..+.++|.+.++....+.-...++.+..+.+......+++++
T Consensus 24 ~~~~v~~~i~~-----~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 24 TIEKIQRQIAE-----NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp HHHHHHHHHHH-----CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHHhcc-----CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 34455555543 47899977 68899999999999998877776665666666555443333444443
No 190
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=40.80 E-value=26 Score=31.80 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=31.5
Q ss_pred CCCcEEEEcCChhH-HHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVI-CEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~-~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
.+.++||||.+-.. +..++..|+..|+ .+..+.||+.
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 67889999998665 8889999999998 5889999864
No 191
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=40.65 E-value=50 Score=30.65 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=40.3
Q ss_pred CCcEEEEcCC-----------hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc
Q psy10478 231 EGSTIIYCPT-----------KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK 279 (451)
Q Consensus 231 ~~~~iVF~~t-----------~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~ 279 (451)
.+-+||++|. ...++.|.+.|+..|+.|. .+-+++.++-.+.++.|..
T Consensus 60 ~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 60 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred ccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 3558999987 6789999999999999876 5567899999999999964
No 192
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=39.86 E-value=29 Score=31.90 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=36.6
Q ss_pred HHHHHHhh-ccCCCCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 219 DLRKLTNF-ENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 219 ~L~~~l~~-~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.|...+.. ....+.++++||.+-..+...+..|...|+. +..|.|++.
T Consensus 227 ~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 227 ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp HHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 44444432 1236788999999988888899999999985 889999865
No 193
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=38.98 E-value=1.3e+02 Score=23.21 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=42.9
Q ss_pred HHHHHHHhhccCCCCcEEEEcC------ChhHHHHHHHHHHHCCCC-eeeecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 218 ADLRKLTNFENQFEGSTIIYCP------TKVICEKVCDVLSRNGIQ-NRPYHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 218 ~~L~~~l~~~~~~~~~~iVF~~------t~~~~~~l~~~L~~~~~~-v~~~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
+.+.+++.. .+++||.. ....|..+.+.|.+.++. ...+.=..+++.+....+......++.++
T Consensus 11 ~~v~~~i~~-----~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vf 81 (118)
T 2wem_A 11 EQLDALVKK-----DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVY 81 (118)
T ss_dssp HHHHHHHHH-----SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHhcc-----CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEE
Confidence 345555543 58999998 599999999999999985 76666555666666554433333444443
No 194
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=38.17 E-value=1e+02 Score=23.22 Aligned_cols=55 Identities=7% Similarity=0.180 Sum_probs=38.9
Q ss_pred CCcEEEEcC------ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEE
Q psy10478 231 EGSTIIYCP------TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVV 285 (451)
Q Consensus 231 ~~~~iVF~~------t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iL 285 (451)
..+++||.. +...|..+..+|.+.++....+.-...+..+....+......++++
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i 74 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL 74 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 346888876 6778999999999999988887777666666655544433344444
No 195
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=38.10 E-value=40 Score=30.44 Aligned_cols=48 Identities=25% Similarity=0.230 Sum_probs=35.5
Q ss_pred HHHHHHhh-ccCCCCcEEEEcCChhHHHHHHHHHHH-CCCC-eeeecCCCC
Q psy10478 219 DLRKLTNF-ENQFEGSTIIYCPTKVICEKVCDVLSR-NGIQ-NRPYHAHIS 266 (451)
Q Consensus 219 ~L~~~l~~-~~~~~~~~iVF~~t~~~~~~l~~~L~~-~~~~-v~~~h~~l~ 266 (451)
.|...+.. ......++++||.+-..+...+..|.+ .|+. +..|.|++.
T Consensus 213 ~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 263 (277)
T 3aay_A 213 ELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT 263 (277)
T ss_dssp HHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence 34444432 123678899999998888888899986 8985 889999853
No 196
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=35.94 E-value=32 Score=32.06 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=37.1
Q ss_pred HHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHH-CCCC-eeeecCCCC
Q psy10478 218 ADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR-NGIQ-NRPYHAHIS 266 (451)
Q Consensus 218 ~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~-~~~~-v~~~h~~l~ 266 (451)
+.|.+.+. ....+.++|+||.+-..+...+..|.+ .|+. +..|.|++.
T Consensus 247 ~~l~~~~~-~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~ 296 (318)
T 3hzu_A 247 EELERLYD-FINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWT 296 (318)
T ss_dssp HHHHHHTT-TCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHH
T ss_pred HHHHHHhc-CCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 34555542 233678999999999999999999987 8985 889999853
No 197
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=35.92 E-value=52 Score=30.88 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=47.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc------ccccccCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAF------GMGIDKPD 299 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~------~~GiD~p~ 299 (451)
.+.++||.++++.-+.++++.+.+. ++.+..++++.... ......+|+|+|.-. ...+++.+
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK--------NKQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT--------TSCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh--------hccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 5678999999999999999988874 45666677664321 123356899999421 23456777
Q ss_pred ccEEEE
Q psy10478 300 VRCVIH 305 (451)
Q Consensus 300 v~~VI~ 305 (451)
+++||.
T Consensus 146 ~~~iIi 151 (395)
T 3pey_A 146 IKIFVL 151 (395)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 198
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=35.57 E-value=40 Score=30.29 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=31.0
Q ss_pred CCCcEEEEcCChh-HHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKV-ICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~-~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.+++|||.+-. .+..++..|+..|+. +..+.||+.
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 6788999998866 788899999999984 788999864
No 199
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=35.53 E-value=45 Score=31.07 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=31.4
Q ss_pred CCCcEEEEcCChh-HHHHHHHHHHHCCCC-eeeecCCCC
Q psy10478 230 FEGSTIIYCPTKV-ICEKVCDVLSRNGIQ-NRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~-~~~~l~~~L~~~~~~-v~~~h~~l~ 266 (451)
.+.+++|||.+-. .+..++..|+..|+. +..+.||+.
T Consensus 110 ~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 148 (318)
T 3hzu_A 110 RDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRD 148 (318)
T ss_dssp TTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHH
Confidence 6788999999866 788899999999984 889999863
No 200
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=35.44 E-value=27 Score=32.29 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=37.0
Q ss_pred HHHHHHHhh-ccCCCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCCH
Q psy10478 218 ADLRKLTNF-ENQFEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHISL 267 (451)
Q Consensus 218 ~~L~~~l~~-~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~~ 267 (451)
+.+.+.+.. ......++++||.+-..+...+..|...|+ .+..|.|++..
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVE 291 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHH
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 344444443 233678899999998888888888999998 68888998653
No 201
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=34.94 E-value=46 Score=25.49 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=27.2
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHH
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDD 183 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~ 183 (451)
..+++|+|-.- .+. ..+..+..++...++.|++++|+.........
T Consensus 46 ~~dlii~d~~l--~~~-----~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~ 91 (134)
T 3f6c_A 46 KPDIVIIDVDI--PGV-----NGIQVLETLRKRQYSGIIIIVSAKNDHFYGKH 91 (134)
T ss_dssp CCSEEEEETTC--SSS-----CHHHHHHHHHHTTCCSEEEEEECC---CTHHH
T ss_pred CCCEEEEecCC--CCC-----ChHHHHHHHHhcCCCCeEEEEeCCCChHHHHH
Confidence 68899998532 111 12334455566678899999999876655443
No 202
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=34.15 E-value=47 Score=29.73 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
.....+.+++.. ......|||.+-..+..+.+.|++.|+.
T Consensus 178 ~~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 178 SGQQAVEELMGL---QQPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHHHTS---SSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC---CCCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 344556666654 3466788999988888999999887653
No 203
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=33.54 E-value=27 Score=30.23 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=27.9
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~ 180 (451)
.++++||+||.-....+|.--.+.+ ..+....|...-+.+|+-.++..
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev---~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEV---ISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHH---HHHHHTSCTTCEEEEECSSCCHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHH---HHHHHhCcCCCEEEEECCCCcHH
Confidence 5799999999977666553222332 22233345555666666554443
No 204
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=33.35 E-value=34 Score=34.14 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=55.1
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccc
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGID 296 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~~GiD 296 (451)
++.|..+++. .+.+++|.|.|...++.+.+.|.+.|+.+...... . .+..| .|.++...+..|+-
T Consensus 371 ~~~L~~~~~~---~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~~g--~v~i~~g~L~~GF~ 435 (483)
T 3hjh_A 371 LDALRKFLET---FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EASDR--GRYLMIGAAEHGFV 435 (483)
T ss_dssp THHHHHHHHH---CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCCTT--CEEEEESCCCSCEE
T ss_pred HHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcCCC--cEEEEEcccccCcc
Confidence 4667776643 35799999999999999999999998865443221 1 12334 45666678999999
Q ss_pred cCCccEEEEeC
Q psy10478 297 KPDVRCVIHYG 307 (451)
Q Consensus 297 ~p~v~~VI~~~ 307 (451)
+|+.+++|..+
T Consensus 436 ~p~~klaVITE 446 (483)
T 3hjh_A 436 DTVRNLALICE 446 (483)
T ss_dssp ETTTTEEEEEH
T ss_pred cCCCCEEEEEc
Confidence 99988887643
No 205
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=32.92 E-value=34 Score=33.75 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=22.8
Q ss_pred cchhhhhhcCCCChhhhcCcCccccCCCeeEEEeCccccc
Q psy10478 35 KYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVT 74 (451)
Q Consensus 35 ~~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe~l~ 74 (451)
..++.+.-|+|+|.--...+......|...|+++||..-.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~A 86 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAA 86 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHH
Confidence 4455555666777543333333334454579999997554
No 206
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=32.59 E-value=37 Score=27.63 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=12.3
Q ss_pred CcccEEEEccccccc
Q psy10478 130 PRIVLIAIDEAHCVS 144 (451)
Q Consensus 130 ~~l~~vViDEah~~~ 144 (451)
.+.+++|+||.+.+.
T Consensus 82 ~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLG 96 (149)
T ss_dssp GGCSEEEEESTTCCC
T ss_pred hCCCEEEEeCccccC
Confidence 358899999999754
No 207
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=32.52 E-value=25 Score=31.68 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=27.4
Q ss_pred HHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 217 MADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 217 ~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
.+.+.+++.. ......|||.+-..+..+.+.|++.|+.
T Consensus 174 ~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 174 RDGAIKVLTG---ADRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp HHHHHHHHTC----CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC---CCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 4455666654 3456788999999998999999887654
No 208
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=32.07 E-value=48 Score=32.22 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=37.7
Q ss_pred HHHHHHHhhc-cCCCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCCH
Q psy10478 218 ADLRKLTNFE-NQFEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHISL 267 (451)
Q Consensus 218 ~~L~~~l~~~-~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~~ 267 (451)
+.+.+.+... .....++|+||.+-..+..++..|...|+ .+..|.|++..
T Consensus 189 ~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~ 240 (423)
T 2wlr_A 189 EQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQT 240 (423)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHH
Confidence 3444444322 23677899999998889999999999998 58899999754
No 209
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=31.73 E-value=1e+02 Score=27.68 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
.....+.+++.. ...+..|||.+-..+..+.+.|++.|+.
T Consensus 173 ~~~~~~~~~l~~---~~~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 173 GGYLAASRLLAL---EVPPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp HHHHHHHHHHHS---SSCCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcC---CCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 344556666654 3467889999999998899999887654
No 210
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=31.71 E-value=1.9e+02 Score=25.83 Aligned_cols=60 Identities=13% Similarity=0.028 Sum_probs=45.4
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHH-HHHHHhh--cCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRK-EIHGLFV--KDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~-~~~~~f~--~g~~~iLVaT~ 289 (451)
.+-++++.-.+.+.++++++.+++.|..+..+..+++..+-. ...+... -|.++|||..-
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 677888888888899999999999999999999998764432 2222222 28999999764
No 211
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=31.62 E-value=40 Score=30.57 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=30.9
Q ss_pred CCCcEEEEcCChh-HHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKV-ICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~-~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
.+.+++|||.+-. .+..++..|...|+ .+..+.||+.
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 6788999998866 57888999999998 4888999864
No 212
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=31.48 E-value=21 Score=27.81 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=29.9
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC------C-CCeeeecCCCCH
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN------G-IQNRPYHAHISL 267 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~------~-~~v~~~h~~l~~ 267 (451)
..+++|||.+-..+...+..|.+. | ..+..+.||+..
T Consensus 72 ~~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~ 115 (127)
T 3i2v_A 72 AVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMA 115 (127)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHH
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHH
Confidence 348999999988888899999887 3 368888898753
No 213
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=31.46 E-value=43 Score=28.29 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.4
Q ss_pred cccEEEEcccccccc
Q psy10478 131 RIVLIAIDEAHCVSQ 145 (451)
Q Consensus 131 ~l~~vViDEah~~~~ 145 (451)
+-.+|||||+|.+..
T Consensus 102 ~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 102 PFKIIFLDEADALTA 116 (226)
T ss_dssp SCEEEEEETGGGSCH
T ss_pred CceEEEEeChhhcCH
Confidence 567999999998753
No 214
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=31.08 E-value=49 Score=28.26 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=11.5
Q ss_pred cccEEEEccccccc
Q psy10478 131 RIVLIAIDEAHCVS 144 (451)
Q Consensus 131 ~l~~vViDEah~~~ 144 (451)
+-.+|||||+|.+.
T Consensus 126 ~~~vlviDe~~~l~ 139 (250)
T 1njg_A 126 RFKVYLIDEVHMLS 139 (250)
T ss_dssp SSEEEEEETGGGSC
T ss_pred CceEEEEECccccc
Confidence 45799999999874
No 215
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=30.97 E-value=41 Score=28.48 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=12.0
Q ss_pred cccEEEEccccccc
Q psy10478 131 RIVLIAIDEAHCVS 144 (451)
Q Consensus 131 ~l~~vViDEah~~~ 144 (451)
+.++|+|||+|.+.
T Consensus 76 ~~dvviIDE~Q~~~ 89 (184)
T 2orw_A 76 DTRGVFIDEVQFFN 89 (184)
T ss_dssp TEEEEEECCGGGSC
T ss_pred CCCEEEEECcccCC
Confidence 57899999999863
No 216
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=30.59 E-value=40 Score=37.13 Aligned_cols=64 Identities=17% Similarity=0.070 Sum_probs=46.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-cccCCccEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC-----AFGMG-IDKPDVRCV 303 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~-----~~~~G-iD~p~v~~V 303 (451)
.+.++|+.++++.-+.+.++.|.+..-.+..++|+.+. +...+|+|+|. .+.+| ..+.++++|
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~-----------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lV 196 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWV 196 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEE-----------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCcc-----------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEE
Confidence 56899999999999999999988764478889998753 23567888885 22222 334556665
Q ss_pred E
Q psy10478 304 I 304 (451)
Q Consensus 304 I 304 (451)
|
T Consensus 197 V 197 (1010)
T 2xgj_A 197 I 197 (1010)
T ss_dssp E
T ss_pred E
Confidence 5
No 217
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=30.57 E-value=95 Score=26.24 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=37.9
Q ss_pred CCcEEEEcCC-----------hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc
Q psy10478 231 EGSTIIYCPT-----------KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK 279 (451)
Q Consensus 231 ~~~~iVF~~t-----------~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~ 279 (451)
.+.+||+.|. ...++.|.+.|+..|+.|. .+-+++..+-.+.++.|.+
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 3456777664 5789999999999999876 4567888888888888864
No 218
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=30.41 E-value=37 Score=31.48 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
..+.+..++.. ...+..|||.+-..+..+.+.|++.|+.
T Consensus 229 ~~~~~~~ll~~---~~~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 229 GAEGVEMLLER---GAKFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp HHHHHHHHHHT---TCCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcC---CCCCeEEEECChHHHHHHHHHHHHcCCC
Confidence 34455566653 4567789999988888888888877653
No 219
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=30.23 E-value=82 Score=28.63 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=32.8
Q ss_pred ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc
Q psy10478 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK 279 (451)
Q Consensus 240 t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~ 279 (451)
+...++.|.+.|+..|+.|. .+-+++.++-.+.++.|..
T Consensus 47 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 45789999999999999875 5568899988899998875
No 220
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=29.60 E-value=73 Score=27.80 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=32.8
Q ss_pred HHHHHhhccCCCCcEEEEcCChh-HHHHHHHHHHHCCCC-eeeecCC
Q psy10478 220 LRKLTNFENQFEGSTIIYCPTKV-ICEKVCDVLSRNGIQ-NRPYHAH 264 (451)
Q Consensus 220 L~~~l~~~~~~~~~~iVF~~t~~-~~~~l~~~L~~~~~~-v~~~h~~ 264 (451)
+...+.... .+.+++|||.+-. .+..++..|. .|+. +..+.||
T Consensus 51 ~~~~~~~l~-~~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 51 LTELFQTLG-LRSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHHTT-CCSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred HHHHHHhcC-CCCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 444444332 3688999999877 8889999999 9985 8889988
No 221
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=29.54 E-value=76 Score=33.02 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=50.3
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccc--c-ccccccCCccEEEE
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA--F-GMGIDKPDVRCVIH 305 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~--~-~~GiD~p~v~~VI~ 305 (451)
.+.+++|.++|+..+.++++.+.+. +..+....|+.. ..+..+|+|+|.- + ...++..++++||.
T Consensus 256 ~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 256 QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEE
Confidence 4569999999999999999887653 666777777743 4677899999963 2 23456677888886
Q ss_pred eCC
Q psy10478 306 YGA 308 (451)
Q Consensus 306 ~~~ 308 (451)
=..
T Consensus 325 DEA 327 (666)
T 3o8b_A 325 DEC 327 (666)
T ss_dssp TTT
T ss_pred ccc
Confidence 444
No 222
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=29.43 E-value=20 Score=29.97 Aligned_cols=36 Identities=11% Similarity=-0.055 Sum_probs=31.5
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCcc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPE 71 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe 71 (451)
++.+..++|+.+..++..+++...+|..+||++|.-
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 90 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 90 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc
Confidence 455788999999999999999999999999999943
No 223
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=29.36 E-value=31 Score=27.27 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=28.7
Q ss_pred CCcEEEEcCChhH---------HHHHHHHHHHCCCCeeeecCCCC
Q psy10478 231 EGSTIIYCPTKVI---------CEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 231 ~~~~iVF~~t~~~---------~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
..+++|||.+-.. +..++..|...|+.+..+.||+.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 4689999988654 35678888999998999999863
No 224
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=29.35 E-value=64 Score=29.04 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=30.1
Q ss_pred CCCcEEEEcCChh-HHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKV-ICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~-~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
.+.+++|||.+-. .+..++..|...|+ .+..+.||+.
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 5678999998853 57788889999998 6888999864
No 225
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=29.21 E-value=1.4e+02 Score=20.45 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=35.9
Q ss_pred cEEEEc-CChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEEE
Q psy10478 233 STIIYC-PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVV 286 (451)
Q Consensus 233 ~~iVF~-~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLV 286 (451)
++++|. ++...|..+...|.+.++....+.-+..+..+.+..+.+..+.+++++
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~ 56 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 456665 457889999999998888777666555444555555555555666554
No 226
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=28.91 E-value=52 Score=30.81 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=23.7
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~ 177 (451)
++-.++||||+|.+.. .....+..+....+...++.++++-+
T Consensus 118 ~~~~vliiDe~~~l~~------~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp SSSEEEEEECGGGSCH------HHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred CCeEEEEEECcchhcH------HHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 3567999999998753 22333444444444444445554433
No 227
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=28.82 E-value=26 Score=30.43 Aligned_cols=36 Identities=8% Similarity=-0.114 Sum_probs=31.7
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCcc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPE 71 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tPe 71 (451)
++.+..++|+.+..++..+++...+|..+||++|.-
T Consensus 55 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~ 90 (212)
T 3eaq_A 55 GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV 90 (212)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh
Confidence 456788999999999999999999999999999943
No 228
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=27.92 E-value=78 Score=24.90 Aligned_cols=46 Identities=11% Similarity=-0.015 Sum_probs=28.9
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHH
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDD 183 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~ 183 (451)
..+++|+|-.- .+ . ..+..+..++...+..|++++|+.........
T Consensus 51 ~~dlii~D~~l--~~--~---~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~ 96 (153)
T 3cz5_A 51 TPDIVVMDLTL--PG--P---GGIEATRHIRQWDGAARILIFTMHQGSAFALK 96 (153)
T ss_dssp CCSEEEECSCC--SS--S---CHHHHHHHHHHHCTTCCEEEEESCCSHHHHHH
T ss_pred CCCEEEEecCC--CC--C---CHHHHHHHHHHhCCCCeEEEEECCCCHHHHHH
Confidence 58899998532 11 1 12333444555568899999999877655443
No 229
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=27.45 E-value=55 Score=29.87 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.1
Q ss_pred cccEEEEccccccc
Q psy10478 131 RIVLIAIDEAHCVS 144 (451)
Q Consensus 131 ~l~~vViDEah~~~ 144 (451)
+-.++||||+|.+.
T Consensus 110 ~~~vliiDe~~~l~ 123 (327)
T 1iqp_A 110 SFKIIFLDEADALT 123 (327)
T ss_dssp SCEEEEEETGGGSC
T ss_pred CCeEEEEeCCCcCC
Confidence 57799999999885
No 230
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=27.43 E-value=51 Score=29.05 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.9
Q ss_pred cccEEEEccccccc
Q psy10478 131 RIVLIAIDEAHCVS 144 (451)
Q Consensus 131 ~l~~vViDEah~~~ 144 (451)
+.++|||||++.+.
T Consensus 89 ~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 89 ETKVIGIDEVQFFD 102 (223)
T ss_dssp TCCEEEECSGGGSC
T ss_pred CCCEEEEecCccCc
Confidence 58999999999753
No 231
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=27.42 E-value=54 Score=25.88 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=30.0
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
..+++|+|-. +... ..+..+..++...+..|++++|+..........
T Consensus 61 ~~dlii~d~~--l~~~-----~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~ 107 (152)
T 3eul_A 61 LPDVALLDYR--MPGM-----DGAQVAAAVRSYELPTRVLLISAHDEPAIVYQA 107 (152)
T ss_dssp CCSEEEEETT--CSSS-----CHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHH
T ss_pred CCCEEEEeCC--CCCC-----CHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHH
Confidence 5889999842 1211 123334455666788999999998877655433
No 232
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=27.40 E-value=75 Score=31.12 Aligned_cols=69 Identities=13% Similarity=0.000 Sum_probs=45.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC-----CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc-------ccccc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN-----GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG-------MGIDK 297 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~-----~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~~~~-------~GiD~ 297 (451)
.+.++||.++++.-+.++++.+.+. ++.+....++.... .......+|+|+|.-.- ..+++
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 233 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDP 233 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCCCCG
T ss_pred CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcCCcCc
Confidence 3448999999999999998877653 35555555543311 11123457999995322 35777
Q ss_pred CCccEEEE
Q psy10478 298 PDVRCVIH 305 (451)
Q Consensus 298 p~v~~VI~ 305 (451)
.++++||.
T Consensus 234 ~~~~~iVi 241 (479)
T 3fmp_B 234 KKIKVFVL 241 (479)
T ss_dssp GGCCEEEE
T ss_pred ccCCEEEE
Confidence 88998885
No 233
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=27.22 E-value=68 Score=31.14 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=36.8
Q ss_pred HHHHHHhh-ccCCCCcEEEEcCChhHHHHHHHHHHHCCC-CeeeecCCCC
Q psy10478 219 DLRKLTNF-ENQFEGSTIIYCPTKVICEKVCDVLSRNGI-QNRPYHAHIS 266 (451)
Q Consensus 219 ~L~~~l~~-~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~v~~~h~~l~ 266 (451)
.|...+.. .....+++++||.+-..+...+..|...|+ .+..|.|++.
T Consensus 345 ~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 345 DITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp HHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHH
Confidence 45555432 223678899999999899999999999998 5888999853
No 234
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=27.15 E-value=28 Score=28.63 Aligned_cols=35 Identities=3% Similarity=-0.222 Sum_probs=31.0
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTP 70 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tP 70 (451)
++.+..++|+.+..++..+++...+|+.+||++|.
T Consensus 59 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 59 GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 93 (163)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 45678899999999999999999999999999993
No 235
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=27.02 E-value=59 Score=35.70 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=40.2
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHC--CCCeeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRN--GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~--~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iLVaT~ 289 (451)
.+.++||.++++.-+.+.++.+.+. ++.+..+||+.+ .++..+|+|+|.
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tp 131 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTT 131 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEH
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECH
Confidence 6788999999999999999999986 678999999875 235567888874
No 236
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=26.17 E-value=45 Score=33.64 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=33.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~ 266 (451)
++.++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 5678999999999999999999999999999999864
No 237
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=26.10 E-value=1.2e+02 Score=23.26 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=30.5
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDD 183 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~ 183 (451)
...+++|+|-. +.+ + -...+..+..++...++.|++++|+.........
T Consensus 49 ~~~dlvi~D~~--l~~-~--~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~ 97 (136)
T 3kto_A 49 DDAIGMIIEAH--LED-K--KDSGIELLETLVKRGFHLPTIVMASSSDIPTAVR 97 (136)
T ss_dssp TTEEEEEEETT--GGG-B--TTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHH
T ss_pred cCCCEEEEeCc--CCC-C--CccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHH
Confidence 35889999842 111 0 0123344555666678999999999887765443
No 238
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=26.04 E-value=1.7e+02 Score=27.97 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=40.8
Q ss_pred CCCCcEEEEcCCh-------hHHHHHHHHHHHCCCCeeee---------cCCCCHHHHH-HHHHHhhcCCceEEEEcc
Q psy10478 229 QFEGSTIIYCPTK-------VICEKVCDVLSRNGIQNRPY---------HAHISLKQRK-EIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 229 ~~~~~~iVF~~t~-------~~~~~l~~~L~~~~~~v~~~---------h~~l~~~~R~-~~~~~f~~g~~~iLVaT~ 289 (451)
+++.++-|+++|- ...+...+.|++.|+.+... -++ ++++|. ...+.|.+.+++.|+|+.
T Consensus 41 k~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 41 AVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSG-TIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCC-CHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 4678888888873 34455667888888876532 233 355555 455678888999999873
No 239
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=26.00 E-value=34 Score=31.26 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=42.6
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK 279 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~ 279 (451)
+.+-+|||.++...++.|.+.|...|+.|.. |.+++.++-.+.++.|..
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQK-FLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEEE-EESCBHHHHHHHHHHHHT
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHh
Confidence 5677899999999999999999999998765 567899988889998875
No 240
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=25.35 E-value=96 Score=23.48 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=27.2
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhc--cCCCCCEEEEEeeCChHHHHH
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRL--PLPDVPILAVTATATPVVIDD 183 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~--~~~~~~~v~lSAT~~~~~~~~ 183 (451)
..+++++|= + +... ..+..+..++. ..+..|++++|+.........
T Consensus 51 ~~dlvi~D~-~-~p~~-----~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~ 98 (129)
T 3h1g_A 51 DTKVLITDW-N-MPEM-----NGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVIT 98 (129)
T ss_dssp TCCEEEECS-C-CSSS-----CHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHH
T ss_pred CCCEEEEeC-C-CCCC-----CHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHH
Confidence 578888873 2 2221 11233344444 346899999999887765443
No 241
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=25.15 E-value=44 Score=30.45 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=12.1
Q ss_pred cccEEEEccccccc
Q psy10478 131 RIVLIAIDEAHCVS 144 (451)
Q Consensus 131 ~l~~vViDEah~~~ 144 (451)
+..++||||+|.+.
T Consensus 102 ~~~vliiDe~~~l~ 115 (319)
T 2chq_A 102 PFKIIFLDEADALT 115 (319)
T ss_dssp CCEEEEEETGGGSC
T ss_pred CceEEEEeCCCcCC
Confidence 57899999999875
No 242
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=25.12 E-value=1.9e+02 Score=27.06 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=39.9
Q ss_pred CCCCcEEEEcCCh-------hHHHHHHHHHHHCCCCeeee---------cCCCCHHHHH-HHHHHhhcCCceEEEEc
Q psy10478 229 QFEGSTIIYCPTK-------VICEKVCDVLSRNGIQNRPY---------HAHISLKQRK-EIHGLFVKDLIKVVVAT 288 (451)
Q Consensus 229 ~~~~~~iVF~~t~-------~~~~~l~~~L~~~~~~v~~~---------h~~l~~~~R~-~~~~~f~~g~~~iLVaT 288 (451)
+++.++-|+++|- ...+...+.|++.|+.+... -++ ++++|. ...+.|.+.+++.|+|+
T Consensus 10 ~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-~d~~Ra~dL~~a~~Dp~i~aI~~~ 85 (331)
T 4e5s_A 10 KKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASS-SISSRVQDLHEAFRDPNVKAILTT 85 (331)
T ss_dssp CTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSC-CHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCC-CHHHHHHHHHHHhhCCCCCEEEEc
Confidence 3677788888773 34556677888888776532 223 355555 45557888899999987
No 243
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=25.12 E-value=1.7e+02 Score=24.29 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC
Q psy10478 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280 (451)
Q Consensus 240 t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g 280 (451)
|...++.|.+.|...|+.|. .|-+++..+-.+.++.|...
T Consensus 53 t~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 53 THLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 36788999999999999875 56678888888888888643
No 244
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.02 E-value=3.4e+02 Score=23.56 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 216 IMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 216 ~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
....+.+++.. ...+..|||.+-..+..+.+.|++.|+.
T Consensus 168 ~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 168 VHQRLTQLITQ---NDQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp HHHHHHHHHHS---SSSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred HHHHHHHHHhc---CCCCcEEEEeCcHHHHHHHHHHHHcCCC
Confidence 34445555532 5678899999999999999999988764
No 245
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=24.93 E-value=49 Score=31.68 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=12.7
Q ss_pred cccEEEEcccccccc
Q psy10478 131 RIVLIAIDEAHCVSQ 145 (451)
Q Consensus 131 ~l~~vViDEah~~~~ 145 (451)
.-.++|+||||.+..
T Consensus 262 ~~~~i~iDEa~~~~~ 276 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVD 276 (392)
T ss_dssp TTCEEEETTGGGGCC
T ss_pred ccEEEEEecHHHHhC
Confidence 457899999999975
No 246
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=30.77 E-value=15 Score=30.53 Aligned_cols=35 Identities=9% Similarity=0.057 Sum_probs=30.9
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTP 70 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tP 70 (451)
++.+..++|+.+..++..+++...+|+.+||++|.
T Consensus 54 ~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 54 GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88 (170)
Confidence 45678889999999999999999999999999994
No 247
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=24.85 E-value=94 Score=27.98 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=39.4
Q ss_pred ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC---CceEEEEccccccccc
Q psy10478 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD---LIKVVVATCAFGMGID 296 (451)
Q Consensus 240 t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g---~~~iLVaT~~~~~GiD 296 (451)
+...++.|.+.|+..|+.|. .+-+++.++-.+.++.|... ..+++|+. .++.|..
T Consensus 42 ~~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~~h~~~d~~v~~-~lsHG~~ 99 (259)
T 3sir_A 42 TNVDCENLTRVLKQLDFEVT-VYKDCRYKDILRTIEYSASQNHSDSDCILVA-ILSHGEM 99 (259)
T ss_dssp -CCHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHHHHTSCCTTEEEEEEE-EEECTTC
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHhhccCCCEEEEE-EecCCCC
Confidence 45789999999999999875 55688998888889988753 33444432 4555653
No 248
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=24.80 E-value=1.9e+02 Score=20.45 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=37.2
Q ss_pred cEEEEc-CChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcCCceEE
Q psy10478 233 STIIYC-PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVV 285 (451)
Q Consensus 233 ~~iVF~-~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g~~~iL 285 (451)
++++|. ++...|..+...|.+.++....+.-...+..+.+..+.+....++++
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l 60 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQI 60 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEE
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 566776 56789999999999998887777666555555555555544555544
No 249
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=24.64 E-value=1.2e+02 Score=23.72 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=30.7
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
...++||+|-.- .+. ..+..+..++...++.|++++|+..........
T Consensus 65 ~~~dlii~D~~l--~~~-----~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~ 112 (150)
T 4e7p_A 65 ESVDIAILDVEM--PVK-----TGLEVLEWIRSEKLETKVVVVTTFKRAGYFERA 112 (150)
T ss_dssp SCCSEEEECSSC--SSS-----CHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHH
T ss_pred cCCCEEEEeCCC--CCC-----cHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHH
Confidence 368899998421 111 123334455666789999999998877665443
No 250
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=24.34 E-value=1.8e+02 Score=27.19 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=40.6
Q ss_pred CCCCcEEEEcCCh-------hHHHHHHHHHHHCCCCeee---------ecCCCCHHHHH-HHHHHhhcCCceEEEEcc
Q psy10478 229 QFEGSTIIYCPTK-------VICEKVCDVLSRNGIQNRP---------YHAHISLKQRK-EIHGLFVKDLIKVVVATC 289 (451)
Q Consensus 229 ~~~~~~iVF~~t~-------~~~~~l~~~L~~~~~~v~~---------~h~~l~~~~R~-~~~~~f~~g~~~iLVaT~ 289 (451)
+++.++-|+++|- ...+...+.|++.|+.+.. |-++ ++++|. ...+.|.+.+++.|+|+-
T Consensus 11 ~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 11 KYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSG-SIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCC-CHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 3677888888875 3345566778888877653 1233 355555 455678888999999873
No 251
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=24.26 E-value=3.9e+02 Score=26.31 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=65.6
Q ss_pred HHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHC-CCCeeeecCC-------CC-----HHHHHHHHHHhhcCCceEE
Q psy10478 219 DLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN-GIQNRPYHAH-------IS-----LKQRKEIHGLFVKDLIKVV 285 (451)
Q Consensus 219 ~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~-~~~v~~~h~~-------l~-----~~~R~~~~~~f~~g~~~iL 285 (451)
.+..++.. .++++||.|++...|.+++..|+.. +-.|..|-+. .+ ..+|..++..+.+++..|+
T Consensus 30 ~~a~l~~~---~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~iv 106 (483)
T 3hjh_A 30 LVAEIAER---HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVL 106 (483)
T ss_dssp HHHHHHHH---SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEE
T ss_pred HHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCCEE
Confidence 34444443 4678999999999999999999875 3234433221 11 2468888888888888899
Q ss_pred EEccccccccccC-----CccEEEEeCCCCCHHHHHHHhc
Q psy10478 286 VATCAFGMGIDKP-----DVRCVIHYGAPKDLSAYYQEIG 320 (451)
Q Consensus 286 VaT~~~~~GiD~p-----~v~~VI~~~~p~s~~~y~Qr~G 320 (451)
|+|-..-++.=.| +-.+.+..|-.-+...+.++.-
T Consensus 107 v~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~ 146 (483)
T 3hjh_A 107 IVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 (483)
T ss_dssp EEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHH
T ss_pred EEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHH
Confidence 8885443332222 2355677777778777776643
No 252
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=24.23 E-value=1.7e+02 Score=24.75 Aligned_cols=50 Identities=8% Similarity=0.025 Sum_probs=39.3
Q ss_pred CCCcEEEEcCC--------------hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC
Q psy10478 230 FEGSTIIYCPT--------------KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280 (451)
Q Consensus 230 ~~~~~iVF~~t--------------~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g 280 (451)
+.+-+|||++. ...++.|.+.|...|+.|..+ -+++..+-.+.++.|...
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHTS
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhhh
Confidence 45667888764 367899999999999988755 478888888888888753
No 253
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=24.15 E-value=29 Score=28.54 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=30.7
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTP 70 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tP 70 (451)
++.+..++|+.+..++..+++...+|+.+||++|.
T Consensus 54 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 54 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 44577889999999999999999999999999994
No 254
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=24.09 E-value=15 Score=30.81 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=31.1
Q ss_pred chhhhhhcCCCChhhhcCcCccccCCCeeEEEeCc
Q psy10478 36 YLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTP 70 (451)
Q Consensus 36 ~i~a~~~~s~~~~~e~~~~~~~~~~~~~~vl~~tP 70 (451)
++.+..++|+.+..++..+++...+|..+||++|.
T Consensus 58 ~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 58 GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 45578899999999999999999999999999994
No 255
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=23.67 E-value=68 Score=27.52 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.0
Q ss_pred CcccEEEEcccccccc
Q psy10478 130 PRIVLIAIDEAHCVSQ 145 (451)
Q Consensus 130 ~~l~~vViDEah~~~~ 145 (451)
.+..++||||+|.+..
T Consensus 103 ~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 103 EQFDLICIDDVDAVAG 118 (242)
T ss_dssp GGSSEEEEETGGGGTT
T ss_pred cCCCEEEEeccccccC
Confidence 3578999999998853
No 256
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=23.50 E-value=1.3e+02 Score=25.16 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=38.5
Q ss_pred CCCcEEEEcCC--------------hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc
Q psy10478 230 FEGSTIIYCPT--------------KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK 279 (451)
Q Consensus 230 ~~~~~iVF~~t--------------~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~ 279 (451)
+.+-+|||.+. ...++.|.+.|...|+.|. .|-+++.++-.+.++.|.+
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVH-VLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHhhh
Confidence 45667777654 3478999999999999874 5678888888888888876
No 257
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=23.29 E-value=2.1e+02 Score=26.58 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=40.7
Q ss_pred CCCCcEEEEcCCh-------hHHHHHHHHHHHCCCCeee---------ecCCCCHHHHH-HHHHHhhcCCceEEEEc
Q psy10478 229 QFEGSTIIYCPTK-------VICEKVCDVLSRNGIQNRP---------YHAHISLKQRK-EIHGLFVKDLIKVVVAT 288 (451)
Q Consensus 229 ~~~~~~iVF~~t~-------~~~~~l~~~L~~~~~~v~~---------~h~~l~~~~R~-~~~~~f~~g~~~iLVaT 288 (451)
+++.++-|.+++. ...+...+.|++.|+.+.. +-++ ++++|. ...+.|.+.+++.|+|+
T Consensus 10 ~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~a~~Dp~i~aI~~~ 85 (327)
T 4h1h_A 10 KQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSS-SIRSRVADIHEAFNDSSVKAILTV 85 (327)
T ss_dssp CTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSC-CHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccC-CHHHHHHHHHHHhhCCCCCEEEEc
Confidence 4778888888873 3455667788888877653 2233 455555 55667889999999988
No 258
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=23.20 E-value=1.6e+02 Score=22.71 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=28.7
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhc--cCCCCCEEEEEeeCChHHHHH
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRL--PLPDVPILAVTATATPVVIDD 183 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~--~~~~~~~v~lSAT~~~~~~~~ 183 (451)
..+++|+|-.- .+ . ..+..+..++. ..+..|++++|+.........
T Consensus 52 ~~dlii~d~~l--~~--~---~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~ 99 (147)
T 2zay_A 52 HPHLIITEANM--PK--I---SGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQ 99 (147)
T ss_dssp CCSEEEEESCC--SS--S---CHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHH
T ss_pred CCCEEEEcCCC--CC--C---CHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHH
Confidence 58899998422 11 1 12333444555 467899999999877665443
No 259
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=23.01 E-value=37 Score=31.33 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=12.5
Q ss_pred cccEEEEccccccc
Q psy10478 131 RIVLIAIDEAHCVS 144 (451)
Q Consensus 131 ~l~~vViDEah~~~ 144 (451)
+.++++|||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 67899999999885
No 260
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=22.74 E-value=1.7e+02 Score=26.49 Aligned_cols=50 Identities=8% Similarity=0.008 Sum_probs=39.6
Q ss_pred CCCcEEEEcCC--------------hhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC
Q psy10478 230 FEGSTIIYCPT--------------KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280 (451)
Q Consensus 230 ~~~~~iVF~~t--------------~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g 280 (451)
+.+-+|||+|. ...++.|.+.|+..|+.|. .+-+++.++-.+.++.|...
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 45667888774 4789999999999999876 45688988888888888753
No 261
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=22.69 E-value=58 Score=33.06 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=33.9
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCH
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~ 267 (451)
++.++++||.+-..+...+..|++.|+.+..+.|++..
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~~ 577 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFKL 577 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHHH
Confidence 66789999999999999999999999998889998753
No 262
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=22.64 E-value=1.3e+02 Score=26.64 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=28.7
Q ss_pred cccEEEEccccccccC---CCCcHH-HHHHHHHhhccC--CCCCEEEEEeeCChHHHH
Q psy10478 131 RIVLIAIDEAHCVSQW---GHDFRP-SYRCLSELRLPL--PDVPILAVTATATPVVID 182 (451)
Q Consensus 131 ~l~~vViDEah~~~~~---g~~fr~-~~~~l~~l~~~~--~~~~~v~lSAT~~~~~~~ 182 (451)
...+|+|||+|.+... +..+.. .+..+..+.... +..+++++.+|-.+...+
T Consensus 124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHH
T ss_pred CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcc
Confidence 5789999999998432 111222 223343333322 345566777776665443
No 263
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.49 E-value=73 Score=29.63 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=23.8
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCCh
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~ 178 (451)
..+++||||+|.+.. .....+..+...++....+.++++.+.
T Consensus 110 ~~~viiiDe~~~l~~------~~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 110 GFKLIILDEADAMTN------AAQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp SCEEEEETTGGGSCH------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEeCCCCCCH------HHHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 478999999998853 222334344444454444445555433
No 264
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.43 E-value=85 Score=29.01 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.4
Q ss_pred CcccEEEEccccccc
Q psy10478 130 PRIVLIAIDEAHCVS 144 (451)
Q Consensus 130 ~~l~~vViDEah~~~ 144 (451)
.+..+++|||+|.+.
T Consensus 132 ~~~~vliiDE~~~l~ 146 (353)
T 1sxj_D 132 PPYKIIILDEADSMT 146 (353)
T ss_dssp CSCEEEEETTGGGSC
T ss_pred CCceEEEEECCCccC
Confidence 356799999999885
No 265
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=22.23 E-value=67 Score=26.12 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=26.0
Q ss_pred CCCcEEEEcC-ChhHHHHHHHHHH--------HCCC-CeeeecCCCCH
Q psy10478 230 FEGSTIIYCP-TKVICEKVCDVLS--------RNGI-QNRPYHAHISL 267 (451)
Q Consensus 230 ~~~~~iVF~~-t~~~~~~l~~~L~--------~~~~-~v~~~h~~l~~ 267 (451)
.+.+++|||. +-..+...+..|. ..|+ ++..+.||+..
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 5678999998 6444445555443 3687 58889999853
No 266
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=21.64 E-value=1.7e+02 Score=22.15 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=29.0
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCChHHHHHH
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~~~~~~~i 184 (451)
...+++|+|=.- -...|. ..+..++...++.|++++|+..........
T Consensus 58 ~~~dlvi~D~~l-~~~~g~------~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~ 105 (135)
T 3snk_A 58 TRPGIVILDLGG-GDLLGK------PGIVEARALWATVPLIAVSDELTSEQTRVL 105 (135)
T ss_dssp CCCSEEEEEEET-TGGGGS------TTHHHHHGGGTTCCEEEEESCCCHHHHHHH
T ss_pred cCCCEEEEeCCC-CCchHH------HHHHHHHhhCCCCcEEEEeCCCCHHHHHHH
Confidence 358899998421 111122 223344555678999999998877655443
No 267
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.56 E-value=61 Score=30.16 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=11.9
Q ss_pred CcccEEEEccccccc
Q psy10478 130 PRIVLIAIDEAHCVS 144 (451)
Q Consensus 130 ~~l~~vViDEah~~~ 144 (451)
.+.+++|+||+|.+.
T Consensus 133 ~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 133 HRYKCVIINEANSLT 147 (354)
T ss_dssp -CCEEEEEECTTSSC
T ss_pred CCCeEEEEeCccccC
Confidence 367899999999853
No 268
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=21.47 E-value=1.5e+02 Score=24.08 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC---CceEEEEccccccccccCCccEEEEeCCCCCHHHHH
Q psy10478 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD---LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYY 316 (451)
Q Consensus 240 t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g---~~~iLVaT~~~~~GiD~p~v~~VI~~~~p~s~~~y~ 316 (451)
|...++.|.+.|...|+.|.. |-+++.++-.+.++.|.+. ..+++|+ -+++.|.. ..|.-.|-+-++.+.+
T Consensus 39 t~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~~dh~~~dc~vv-~ilSHG~~----g~i~g~D~~~~l~~i~ 112 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVRN-KNDLTREEIVELMRDVSKEDHSKRSSFVC-VLLSHGEE----GIIFGTNGPVDLKKIT 112 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHHSCCTTEEEEEE-EEESCEET----TEEEETTEEEEHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHHhhcCCCCeEEE-EeccCCCC----CEEEEeCCcEeHHHHH
Confidence 456789999999999998764 5578888888888888753 2334333 24455542 3444444344455544
Q ss_pred HHh
Q psy10478 317 QEI 319 (451)
Q Consensus 317 Qr~ 319 (451)
...
T Consensus 113 ~~F 115 (146)
T 2dko_A 113 NFF 115 (146)
T ss_dssp HTT
T ss_pred HHh
Confidence 433
No 269
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=21.45 E-value=83 Score=26.83 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=20.4
Q ss_pred cccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEE
Q psy10478 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAV 172 (451)
Q Consensus 131 ~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~l 172 (451)
++++|+|||++.+.. ..+..+..+.. .+.++++.
T Consensus 81 ~~dvViIDEaqfl~~------~~v~~l~~l~~--~~~~Vi~~ 114 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDD------EIVEIVNKIAE--SGRRVICA 114 (191)
T ss_dssp TCSEEEECSGGGSCT------HHHHHHHHHHH--TTCEEEEE
T ss_pred cCCEEEEECCCCCCH------HHHHHHHHHHh--CCCEEEEE
Confidence 589999999997531 22333444332 25666654
No 270
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=21.42 E-value=4.3e+02 Score=23.40 Aligned_cols=60 Identities=8% Similarity=0.092 Sum_probs=44.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecCCCCHHH-HHHHHHHhh--cCCceEEEEcc
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQ-RKEIHGLFV--KDLIKVVVATC 289 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~-R~~~~~~f~--~g~~~iLVaT~ 289 (451)
.+-++++.-.+.+..+++++.+.+.|..+..+..+++..+ -+...+... -|.+++||..-
T Consensus 32 ~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 32 AGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 5677777777778888999999999989999999987543 333333333 27899999764
No 271
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=21.41 E-value=69 Score=32.26 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=32.5
Q ss_pred CCCcEEEEcCChhHHHHHHHHHHHCCCCeeeecC-CCC
Q psy10478 230 FEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHA-HIS 266 (451)
Q Consensus 230 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~v~~~h~-~l~ 266 (451)
++.+++|||.+-..+...+.+|+..|+.+..+.| |+.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 3678999999988888999999999999989999 864
No 272
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.25 E-value=1e+02 Score=30.80 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=26.7
Q ss_pred CcccEEEEccccccccCCCCcHHHHHHHHHhhccCCCCCEEEEEeeCC
Q psy10478 130 PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177 (451)
Q Consensus 130 ~~l~~vViDEah~~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT~~ 177 (451)
.+-.+|+|||+|.+......+... +..+... .+.++++.+++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~---L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQ---LAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHH---HHHHHHH-CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHH---HHHHHHh-cCCCEEEEEcCCC
Confidence 356799999999987532212222 2222222 4678888888754
No 273
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=21.25 E-value=64 Score=30.85 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=32.8
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHCCCC-eeeecCCCCHH
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRNGIQ-NRPYHAHISLK 268 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~~~~-v~~~h~~l~~~ 268 (451)
+.++++||.+-..+...+..|...|+. +..|.|++..-
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W 284 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEY 284 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHHH
Confidence 678999999988888889999999985 88999998654
No 274
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=21.18 E-value=79 Score=28.15 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhccCCCCcEEEEcCChhHHHHHHHHHHHCCCC
Q psy10478 215 DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257 (451)
Q Consensus 215 ~~~~~L~~~l~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~ 257 (451)
...+.+.+++.. ...+..|||.+-..+..+.+.|++.|+.
T Consensus 174 ~~~~~~~~~l~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 174 GGVDAAKKLMKL---KNTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp HHHHHHHHHTTS---SSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC---CCCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 344556666653 3456788999999999999999988754
No 275
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=20.95 E-value=2.6e+02 Score=28.92 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=45.6
Q ss_pred CCcEEEEcCChhHHHHHHHHHHHC-CC-Ceeeec--------------------CCC--C---HHHHHHHHHHhhcCCce
Q psy10478 231 EGSTIIYCPTKVICEKVCDVLSRN-GI-QNRPYH--------------------AHI--S---LKQRKEIHGLFVKDLIK 283 (451)
Q Consensus 231 ~~~~iVF~~t~~~~~~l~~~L~~~-~~-~v~~~h--------------------~~l--~---~~~R~~~~~~f~~g~~~ 283 (451)
+.++||.+++...|.+++..|+.. +- .|..|- ... + ...|..++..+.+++-.
T Consensus 53 ~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~R~~~l~~L~~~~~~ 132 (664)
T 1c4o_A 53 GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDV 132 (664)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCE
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHHHHHHHHHHHhCCCe
Confidence 468999999999999999999876 22 233332 222 2 45788888888877767
Q ss_pred EEEEcccccccc
Q psy10478 284 VVVATCAFGMGI 295 (451)
Q Consensus 284 iLVaT~~~~~Gi 295 (451)
|+|+|-..-.|+
T Consensus 133 ivV~s~~~l~~~ 144 (664)
T 1c4o_A 133 IVVASVSAIYGL 144 (664)
T ss_dssp EEEEEGGGCSCC
T ss_pred EEEecHHHHhcC
Confidence 888875443553
No 276
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=20.81 E-value=72 Score=29.70 Aligned_cols=41 Identities=15% Similarity=-0.046 Sum_probs=24.7
Q ss_pred cCcccEEEEccccc-cccCCCCcHHHHHHHHHhhccCCCCCEEEEEee
Q psy10478 129 IPRIVLIAIDEAHC-VSQWGHDFRPSYRCLSELRLPLPDVPILAVTAT 175 (451)
Q Consensus 129 l~~l~~vViDEah~-~~~~g~~fr~~~~~l~~l~~~~~~~~~v~lSAT 175 (451)
+++-+++||||+|. +... ....+....+.+|..-++.+.+|
T Consensus 74 f~~~kvvii~~~~~kl~~~------~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAA------INEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp CCSCEEEEEECCSSCCCTT------HHHHHHHHHTTCBTTEEEEEEES
T ss_pred ccCCeEEEEECCCCCCChH------HHHHHHHHHhcCCCCeEEEEEcC
Confidence 45688999999998 6431 22334445555554445555554
No 277
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=20.73 E-value=1.1e+02 Score=24.80 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=23.2
Q ss_pred CCc-EEEEc-CChhHHHH----HHHHHHHCCC---CeeeecCCCCH
Q psy10478 231 EGS-TIIYC-PTKVICEK----VCDVLSRNGI---QNRPYHAHISL 267 (451)
Q Consensus 231 ~~~-~iVF~-~t~~~~~~----l~~~L~~~~~---~v~~~h~~l~~ 267 (451)
+.+ +|+|| .+-..+.. +...|.+.|+ .+..+.||+..
T Consensus 67 ~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~ 112 (152)
T 2j6p_A 67 KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEA 112 (152)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHH
T ss_pred CCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHH
Confidence 344 45559 45444433 3477888886 58889999754
No 278
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=20.71 E-value=1.3e+02 Score=21.67 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=35.6
Q ss_pred cEEEEcCC-hhHH------HHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhc--CCceEEE
Q psy10478 233 STIIYCPT-KVIC------EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK--DLIKVVV 286 (451)
Q Consensus 233 ~~iVF~~t-~~~~------~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~--g~~~iLV 286 (451)
+++||..+ ...| ..+.++|.+.|+....+.=..+++.+....+.... ..++.++
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if 65 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV 65 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE
Confidence 46666543 4455 78888999999888777777777777766655431 2444444
No 279
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=20.61 E-value=2.8e+02 Score=24.95 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=33.6
Q ss_pred ChhHHHHHHHHHHHCCCCeeeecCCCCHHHHHHHHHHhhcC
Q psy10478 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280 (451)
Q Consensus 240 t~~~~~~l~~~L~~~~~~v~~~h~~l~~~~R~~~~~~f~~g 280 (451)
+...++.|++.|++.|+.|. .+-+++..+-.+.++.|.+.
T Consensus 54 ~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 54 TNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 37889999999999999875 55688999999999999753
No 280
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.31 E-value=60 Score=29.53 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=12.4
Q ss_pred cccEEEEcccccccc
Q psy10478 131 RIVLIAIDEAHCVSQ 145 (451)
Q Consensus 131 ~l~~vViDEah~~~~ 145 (451)
+-.++||||+|.+..
T Consensus 107 ~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 107 KHKIVILDEADSMTA 121 (323)
T ss_dssp CCEEEEEESGGGSCH
T ss_pred CceEEEEECcccCCH
Confidence 477999999998753
Done!