Your job contains 1 sequence.
>psy10478
MIFQPNLNDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCD
NCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD
VPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV
IDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPT
KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDV
RCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHS
KTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLELEQVPRG
GRMVVENSEVWMSTEARPGREAFEFLPHLKT
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10478
(451 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend... 710 6.1e-69 1
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-... 692 5.3e-67 1
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum... 691 6.1e-67 1
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend... 680 9.9e-66 1
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s... 677 2.0e-65 1
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s... 677 2.4e-65 1
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein... 663 5.7e-64 1
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s... 659 1.4e-63 1
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s... 658 2.1e-63 1
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe... 383 2.7e-63 2
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s... 656 4.1e-63 1
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s... 656 4.6e-63 1
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd... 598 2.3e-57 1
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli... 517 1.2e-49 1
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote... 510 7.2e-49 2
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37... 509 8.5e-49 1
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t... 509 1.9e-47 1
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he... 492 5.4e-47 1
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he... 492 5.4e-47 1
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 489 1.1e-46 1
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 489 1.1e-46 1
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli... 488 1.4e-46 1
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN... 487 1.8e-46 1
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric... 500 2.0e-46 1
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec... 488 4.3e-46 2
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica... 492 8.4e-46 1
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ... 492 8.4e-46 1
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp... 492 1.0e-45 1
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp... 492 1.2e-45 1
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia... 479 1.3e-45 1
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica... 491 1.5e-45 1
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe... 478 1.6e-45 1
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s... 490 2.0e-45 1
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s... 490 2.0e-45 1
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s... 488 3.2e-45 1
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr... 467 3.3e-45 2
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh... 474 4.4e-45 1
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase... 486 4.7e-45 1
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop... 484 6.0e-45 1
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot... 465 1.2e-44 2
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe... 469 3.1e-44 1
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"... 459 1.9e-43 1
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd... 466 3.3e-43 1
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"... 456 3.5e-43 1
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica... 455 4.5e-43 1
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein... 455 4.5e-43 1
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom... 467 5.3e-43 1
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"... 454 5.7e-43 1
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica... 451 1.2e-42 1
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica... 451 1.2e-42 1
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"... 451 1.3e-42 1
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein... 458 2.6e-42 1
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth... 455 1.2e-41 1
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe... 302 1.4e-41 2
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he... 302 1.4e-41 2
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species... 442 1.5e-41 1
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd... 445 3.2e-41 1
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l... 446 4.8e-41 1
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom... 446 6.5e-41 1
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom... 446 9.4e-41 1
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he... 436 1.2e-40 1
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik... 431 2.6e-40 1
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom... 440 2.9e-40 1
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7... 414 1.5e-37 1
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein... 412 2.1e-37 1
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic... 401 2.4e-37 1
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species... 411 2.6e-37 1
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein... 395 9.0e-37 2
UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic... 401 3.0e-36 1
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic... 401 3.2e-36 1
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein... 388 5.7e-36 1
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ... 394 6.1e-36 1
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"... 394 6.1e-36 1
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli... 345 8.5e-36 2
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi... 381 3.7e-34 1
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli... 369 2.7e-33 1
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s... 369 2.7e-33 1
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s... 258 2.1e-30 2
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso... 230 3.5e-30 2
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein... 212 4.3e-30 3
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species... 330 5.5e-28 1
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic... 325 6.2e-27 1
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein... 321 2.5e-26 1
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein... 321 2.5e-26 1
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein... 321 2.5e-26 1
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species... 316 1.3e-25 1
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe... 311 5.6e-25 1
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric... 187 2.0e-24 3
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote... 208 2.1e-24 2
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:... 208 2.1e-24 2
UNIPROTKB|F1RMJ2 - symbol:BLM "Uncharacterized protein" s... 274 2.2e-21 1
UNIPROTKB|Q47ZX4 - symbol:CPS_2945 "Putative DEAD/DEAH bo... 239 6.9e-17 1
TIGR_CMR|CPS_2945 - symbol:CPS_2945 "putative DEAD/DEAH b... 239 6.9e-17 1
ASPGD|ASPL0000073665 - symbol:AN5092 species:162425 "Emer... 199 2.0e-15 2
UNIPROTKB|J3KSL7 - symbol:RECQL5 "ATP-dependent DNA helic... 186 8.5e-14 1
POMBASE|SPBCPT2R1.08c - symbol:tlh2 "RecQ type DNA helica... 195 1.5e-11 1
POMBASE|SPAC212.11 - symbol:tlh1 "RecQ type DNA helicase"... 195 1.6e-11 1
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s... 186 2.5e-11 1
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 184 6.5e-11 1
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 175 5.1e-10 1
WARNING: Descriptions of 278 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|O93530 [details] [associations]
symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
Xenbase:XB-GENE-992879 Uniprot:O93530
Length = 1436
Score = 710 (255.0 bits), Expect = 6.1e-69, P = 6.1e-69
Identities = 140/282 (49%), Positives = 189/282 (67%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIAIDEAHC+S+WGHDFR +YR L L+ LP+VPI+A+TATA+P + +DI SL L
Sbjct: 603 ITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIREDITKSLNLH 662
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQ-----FEGSTIIYCPTKVICEK 246
+P + T FDRPNLYL + K +I DLR+ + Q FEG+TI+YCPT+ E+
Sbjct: 663 NPQVTCTSFDRPNLYLDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIVYCPTRKTSEQ 722
Query: 247 VCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHY 306
V L + GI YHA + +KQR+E+H F++D I VVAT AFGMGI+KPD+R VIHY
Sbjct: 723 VTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGINKPDIRKVIHY 782
Query: 307 GAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKR 366
GAPK++ +YYQEIGRAGRDGL S C+ + AD N + + + +E+ M+ +
Sbjct: 783 GAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLG-EIPNKGFREYKLKMLTK 841
Query: 367 VEKYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
+EKYL TCRRK +L+HF+ + A S + +KCCDNC+
Sbjct: 842 MEKYLNSSTCRRKIILSHFEDKQLRKASSGIMGTEKCCDNCK 883
Score = 186 (70.5 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 36/71 (50%), Positives = 48/71 (67%)
Query: 60 DNCRQVVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFRPSYRCLSELRL 116
D +V+YMTPE+ + S L + I LIAIDEAHC+S+WGHDFR +YR L L+
Sbjct: 574 DGKMRVIYMTPEFCSRGISLLQDLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKR 633
Query: 117 PLPDVPILFLS 127
LP+VPI+ L+
Sbjct: 634 MLPNVPIVALT 644
Score = 125 (49.1 bits), Expect = 0.00045, P = 0.00045
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 13 QEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVP-PDKCCDNCR 63
+E+ M+ ++EKYL TCRRK +L+HF+ + A S + +KCCDNC+
Sbjct: 832 REYKLKMLTKMEKYLNSSTCRRKIILSHFEDKQLRKASSGIMGTEKCCDNCK 883
>RGD|1564788 [details] [associations]
symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
"cellular response to starvation" evidence=ISO] [GO:0009378
"four-way junction helicase activity" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0010259 "multicellular
organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
"nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0051345 "positive regulation of
hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
binding" evidence=ISO] [GO:0071480 "cellular response to gamma
radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
Length = 1448
Score = 692 (248.7 bits), Expect = 5.3e-67, P = 5.3e-67
Identities = 136/283 (48%), Positives = 192/283 (67%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIA+DEAHC+S+WGHDFR S+R L L+ LP VP++A++ATA+ + +DI L L+
Sbjct: 674 ITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVPVIALSATASSSIREDIIRCLNLK 733
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLR----KLTNFENQFEGSTIIYCPTKVICEKV 247
DP+I TGFDRPNLYL K +I+ DL+ + T+ +FEG TIIYCP++ + E+V
Sbjct: 734 DPHITCTGFDRPNLYLEVERKTGNILQDLKPFLVRKTSSAWEFEGPTIIYCPSRKVTEQV 793
Query: 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307
L + + + YHA + + +RK+IH F++D I+ VVAT AFGMGI+K D+R VIHYG
Sbjct: 794 TVELGKLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIAFGMGINKADIRKVIHYG 853
Query: 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF--TKNNMIFQPNLNDSEIQEHSKTMMK 365
APK++ +YYQEIGRAGRDGL S C+ + ADF T+N +I +++ + + H MM
Sbjct: 854 APKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTRNRLI---EIHNEKFRLHKLKMMV 910
Query: 366 RVEKYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
++EKYL CRR+ +L+HF+ + A V +KCCDNCR
Sbjct: 911 KMEKYLHSSRCRRQIILSHFEDKRLQKASLAVMGTEKCCDNCR 953
Score = 151 (58.2 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 66 VYMTPEYVTNNTSFLSRIP---RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP 122
V+ T +Y N + I LIA+DEAHC+S+WGHDFR S+R L L+ LP VP
Sbjct: 651 VWFTYQYCMNQFRMIQEARCSVGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVP 710
Query: 123 ILFLS 127
++ LS
Sbjct: 711 VIALS 715
>MGI|MGI:109635 [details] [associations]
symbol:Wrn "Werner syndrome homolog (human)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
"Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
"DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
response to starvation" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=ISO] [GO:0010225 "response to
UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
ion binding" evidence=ISO] [GO:0031297 "replication fork
processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
transport" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051345 "positive regulation of hydrolase
activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
GermOnline:ENSMUSG00000031583 Uniprot:O09053
Length = 1401
Score = 691 (248.3 bits), Expect = 6.1e-67, P = 6.1e-67
Identities = 133/282 (47%), Positives = 191/282 (67%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIA+DEAHC+S+WGHDFR S+R L L+ LP VP++A++ATA+ + +DI + L L+
Sbjct: 626 ITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDIISCLNLK 685
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLR----KLTNFENQFEGSTIIYCPTKVICEKV 247
DP I TGFDRPNLYL K +I+ DL+ + + +FEG TIIYCP++ + E+V
Sbjct: 686 DPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPSRKMTEQV 745
Query: 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307
L + + R YHA + + +RK++H F++D I+ VVAT AFGMGI+K D+R VIHYG
Sbjct: 746 TAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADIRKVIHYG 805
Query: 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF-TKNNMIFQPNLNDSEIQEHSKTMMKR 366
APK++ +YYQEIGRAGRDGL S C+ + ADF T N++ + ++D + + + MM +
Sbjct: 806 APKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIE--IHDEKFRLYKLKMMVK 863
Query: 367 VEKYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
+EKYL CRR+ +L+HF+ + A + +KCCDNCR
Sbjct: 864 MEKYLHSSQCRRRIILSHFEDKCLQKASLDIMGTEKCCDNCR 905
Score = 182 (69.1 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 120
+V+Y+TPE+ + N L ++ I LIA+DEAHC+S+WGHDFR S+R L L+ LP
Sbjct: 601 RVIYITPEFCSGNLDLLQQLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPL 660
Query: 121 VPILFLS 127
VP++ LS
Sbjct: 661 VPVIALS 667
>UNIPROTKB|Q14191 [details] [associations]
symbol:WRN "Werner syndrome ATP-dependent helicase"
species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031297 "replication fork processing" evidence=IMP;IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
[GO:0010259 "multicellular organismal aging" evidence=IMP]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
[GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0009378 "four-way junction helicase activity"
evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
"positive regulation of hydrolase activity" evidence=IDA]
[GO:0006979 "response to oxidative stress" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
binding" evidence=IDA] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
evidence=IDA] [GO:0009267 "cellular response to starvation"
evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
evidence=IDA] [GO:0042981 "regulation of apoptotic process"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
Uniprot:Q14191
Length = 1432
Score = 680 (244.4 bits), Expect = 9.9e-66, P = 9.9e-66
Identities = 135/280 (48%), Positives = 183/280 (65%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIA+DEAHC+S+WGHDFR S+R L L+ LP VPI+A+TATA+ + +DI L LR
Sbjct: 662 ITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLR 721
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKL---TNFENQFEGSTIIYCPTKVICEKVC 248
+P I TGFDRPNLYL K +I+ DL+ T+ +FEG TIIYCP++ + ++V
Sbjct: 722 NPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSSHWEFEGPTIIYCPSRKMTQQVT 781
Query: 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA 308
L + + YHA +S RK+IH FV+D I+ V+AT AFGMGI+K D+R VIHYGA
Sbjct: 782 GELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKADIRQVIHYGA 841
Query: 309 PKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVE 368
PKD+ +YYQEIGRAGRDGL S C+ + AD N + + + + + + MM ++E
Sbjct: 842 PKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLT-EIRNEKFRLYKLKMMAKME 900
Query: 369 KYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
KYL CRR+ +L+HF+ V A + +KCCDNCR
Sbjct: 901 KYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCR 940
Score = 182 (69.1 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 34/67 (50%), Positives = 47/67 (70%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 120
++VY+TPEY + N L ++ I LIA+DEAHC+S+WGHDFR S+R L L+ LP
Sbjct: 637 RIVYVTPEYCSGNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPM 696
Query: 121 VPILFLS 127
VPI+ L+
Sbjct: 697 VPIVALT 703
>UNIPROTKB|F1RX70 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
Length = 1409
Score = 677 (243.4 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 133/281 (47%), Positives = 184/281 (65%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I +IA+DEAHC+S+WGHDFR S+R L L+ LP VPI+A+TAT T + +DI L L+
Sbjct: 630 ITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVALTATGTSSIREDIVRCLKLK 689
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKL----TNFENQFEGSTIIYCPTKVICEKV 247
DP I TGFDRPNLYL K DI+ DL++ T+ +FEG TIIYCP++ + E+V
Sbjct: 690 DPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVQKTSSAWEFEGPTIIYCPSRKMTEQV 749
Query: 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307
L + + YHA +S+ RK++H F++D I+ V+AT AFGMGI+K D+R VIHYG
Sbjct: 750 TAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKADIRKVIHYG 809
Query: 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRV 367
APK++ +YYQEIGRAGRDGL S C+ + AD N + N++ + + MM ++
Sbjct: 810 APKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLSEICNEN-FRLYKLKMMAKM 868
Query: 368 EKYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
EKYL CRR+ +L+HF+ + A + +KCCDNCR
Sbjct: 869 EKYLHSSRCRRQIILSHFEDKQLRKASLGIMGTEKCCDNCR 909
Score = 174 (66.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 120
++VY+TPE+ + N L + I +IA+DEAHC+S+WGHDFR S+R L L+ LP
Sbjct: 605 RIVYLTPEFCSGNLDLLQHLEANIGITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPL 664
Query: 121 VPILFLS 127
VPI+ L+
Sbjct: 665 VPIVALT 671
Score = 40 (19.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 238 CPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEI 273
C ++ C+ CD + N + + ++E+
Sbjct: 1330 CDNRIQCQSACDSSKKRYFSNSEESCSDAKRSKEEV 1365
>UNIPROTKB|I3LC91 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
Length = 1507
Score = 677 (243.4 bits), Expect = 2.4e-65, P = 2.4e-65
Identities = 133/281 (47%), Positives = 184/281 (65%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I +IA+DEAHC+S+WGHDFR S+R L L+ LP VPI+A+TAT T + +DI L L+
Sbjct: 729 ITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVALTATGTSSIREDIVRCLKLK 788
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKL----TNFENQFEGSTIIYCPTKVICEKV 247
DP I TGFDRPNLYL K DI+ DL++ T+ +FEG TIIYCP++ + E+V
Sbjct: 789 DPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVQKTSSAWEFEGPTIIYCPSRKMTEQV 848
Query: 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307
L + + YHA +S+ RK++H F++D I+ V+AT AFGMGI+K D+R VIHYG
Sbjct: 849 TAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKADIRKVIHYG 908
Query: 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRV 367
APK++ +YYQEIGRAGRDGL S C+ + AD N + N++ + + MM ++
Sbjct: 909 APKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLSEICNEN-FRLYKLKMMAKM 967
Query: 368 EKYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
EKYL CRR+ +L+HF+ + A + +KCCDNCR
Sbjct: 968 EKYLHSSRCRRQIILSHFEDKQLRKASLGIMGTEKCCDNCR 1008
Score = 174 (66.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 120
++VY+TPE+ + N L + I +IA+DEAHC+S+WGHDFR S+R L L+ LP
Sbjct: 704 RIVYLTPEFCSGNLDLLQHLEANIGITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPL 763
Query: 121 VPILFLS 127
VPI+ L+
Sbjct: 764 VPIVALT 770
Score = 40 (19.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 238 CPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEI 273
C ++ C+ CD + N + + ++E+
Sbjct: 1428 CDNRIQCQSACDSSKKRYFSNSEESCSDAKRSKEEV 1463
>UNIPROTKB|F1NAR0 [details] [associations]
symbol:F1NAR0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0010259 "multicellular organismal aging" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
complex" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
Length = 1367
Score = 663 (238.4 bits), Expect = 5.7e-64, P = 5.7e-64
Identities = 126/288 (43%), Positives = 190/288 (65%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ R I LIA+DEAHC+S+WGHDFR S+R L+ L+ LP VPI+A+TATA+P + +DI
Sbjct: 567 IDRTTGIALIAVDEAHCISEWGHDFRISFRKLNSLKKALPSVPIVALTATASPSIREDIV 626
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADL-----RKLTNFENQFEGSTIIYCPT 240
L L++P + T FDRPNLYL + + + DL RK ++ +FEG TIIYCP+
Sbjct: 627 NCLNLKNPQVTCTSFDRPNLYLEVGRQSGNTLRDLKQFLTRKGSSSTYEFEGPTIIYCPS 686
Query: 241 KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDV 300
+ E+V L++ G+ YHA + +++R++ H F++D I+ VVAT AFGMGI+K D+
Sbjct: 687 RKATEQVMFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVAFGMGINKADI 746
Query: 301 RCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHS 360
R VIHYGAPK++ +YYQEIGRAGRDGL + C+ + AD N + +++ + + +
Sbjct: 747 RMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWTAADLVLNRRLLN-EIHNEKFRLYK 805
Query: 361 KTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
M++++EKYL +CR + +L+HF+ + S + ++CCDNCR
Sbjct: 806 LKMLEKMEKYLSSNSCRSRIILSHFEDKQLRKVSSGIMGTEECCDNCR 853
Score = 190 (71.9 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 39/82 (47%), Positives = 53/82 (64%)
Query: 49 AESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFR 105
A+S+ D +V+YMTPE+ + N L I R I LIA+DEAHC+S+WGHDFR
Sbjct: 533 AQSKDVKDNIKAGLYRVIYMTPEFCSGNLELLQDIDRTTGIALIAVDEAHCISEWGHDFR 592
Query: 106 PSYRCLSELRLPLPDVPILFLS 127
S+R L+ L+ LP VPI+ L+
Sbjct: 593 ISFRKLNSLKKALPSVPIVALT 614
>UNIPROTKB|F1PZR2 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
Uniprot:F1PZR2
Length = 1336
Score = 659 (237.0 bits), Expect = 1.4e-63, P = 1.4e-63
Identities = 133/282 (47%), Positives = 180/282 (63%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIA+DEAHC+S+WGHDFR S+R L L+ LP VPI+A+TATA+ + +DI L L+
Sbjct: 639 ITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDIVRCLNLK 698
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADL-----RKLTNFENQFEGSTIIYCPTKVICEK 246
+P I TGFDRPNLYL K I+ DL +K N +FEG TIIYCP++ E+
Sbjct: 699 NPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTRNSIWEFEGPTIIYCPSRKTTEQ 758
Query: 247 VCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHY 306
V L + + YHA + +K R+EIH F++D I+ VVAT AFGMGI+K D+R VIHY
Sbjct: 759 VTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIHY 818
Query: 307 GAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKR 366
GAPK++ +YYQEIGRAGRDGL S C+ + AD N + + + + MM +
Sbjct: 819 GAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLS-EITSEKFRLYKLKMMAK 877
Query: 367 VEKYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
+EKYL CRR+ +L+HF+ + A + ++CCDNCR
Sbjct: 878 MEKYLHSTRCRRQLILSHFEDKQLRKASVGIMGTEQCCDNCR 919
Score = 189 (71.6 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 54/164 (32%), Positives = 84/164 (51%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 120
++VY+TPE+ + N L ++ I LIA+DEAHC+S+WGHDFR S+R L L+ LP
Sbjct: 614 RIVYITPEFCSGNLFLLQQLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPS 673
Query: 121 VPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180
VPI+ L+ I D C++ P C R P++ + T + +
Sbjct: 674 VPIVALTATASSS-IREDIVRCLNLKN----PQITCTGFDR---PNLYLEVRRKTGS--I 723
Query: 181 IDDICTSLMLRDPNIINTGFDRPNLYLAASVKQ-DDIMADLRKL 223
+ D+ L+ + N I F+ P + S K + + A+LRKL
Sbjct: 724 LQDLDQFLVQKTRNSI-WEFEGPTIIYCPSRKTTEQVTAELRKL 766
>UNIPROTKB|E1BEE6 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
Length = 1404
Score = 658 (236.7 bits), Expect = 2.1e-63, P = 2.1e-63
Identities = 130/281 (46%), Positives = 182/281 (64%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIA+DEAHC+S+WGHDFR S+R L L+ P VPI+A+TATA V +DI L L+
Sbjct: 628 ITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPKVPIVALTATAGSSVREDIVCCLNLK 687
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFEN----QFEGSTIIYCPTKVICEKV 247
DP I TGFDRPNLYL K DI+ DL++ ++ +FEG TIIYCP++ + E+V
Sbjct: 688 DPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVCKSSSAWEFEGPTIIYCPSRKMTEQV 747
Query: 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307
L + + YHA +S+ RK++H F++D I+ V+AT AFGMGI+K D+R VIHYG
Sbjct: 748 TAELKKLKLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVAFGMGINKADIRQVIHYG 807
Query: 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRV 367
APK++ +YYQEIGRAGRDGL S C+ + AD N + + + + + + MM ++
Sbjct: 808 APKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNRCLLS-EIRNEKFRLYKLKMMGKM 866
Query: 368 EKYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
EKYL CRR+ +L+HF+ + A + + CCDNC+
Sbjct: 867 EKYLYSSKCRRQIILSHFEDKQLRKASVGIMGTENCCDNCK 907
Score = 171 (65.3 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 120
++VY+TPE+ + N L ++ I LIA+DEAHC+S+WGHDFR S+R L L+ P
Sbjct: 603 RIVYLTPEFCSGNLELLRQLEANIGITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPK 662
Query: 121 VPILFLS 127
VPI+ L+
Sbjct: 663 VPIVALT 669
>ZFIN|ZDB-GENE-070702-2 [details] [associations]
symbol:wrn "Werner syndrome" species:7955 "Danio
rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
Length = 1436
Score = 383 (139.9 bits), Expect = 2.7e-63, Sum P(2) = 2.7e-63
Identities = 82/170 (48%), Positives = 112/170 (65%)
Query: 120 DVPILF-LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATP 178
++P+L L R + LIA+DEAHC+SQWGHDFR +YR L +L+ LP VP LA+TATA+P
Sbjct: 544 NIPLLVQLDRTVGLSLIAVDEAHCISQWGHDFRSAYRELGKLKKNLPTVPFLALTATASP 603
Query: 179 VVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRK-LTNFEN---QFEGST 234
+ DDI SL L +P I T FDRPNLYL + K D++ DL++ L + +FEGS
Sbjct: 604 SIRDDIIKSLHLINPMITCTSFDRPNLYLDVNRKSGDVIQDLKRFLVKKKGGGYEFEGSA 663
Query: 235 IIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKV 284
I+YCP+K E+V L + I YHA +S+KQR+E F++D I+V
Sbjct: 664 IVYCPSKKEAERVTTALFKLDIPCGVYHAGLSIKQRRETQHQFMRDEIQV 713
Score = 308 (113.5 bits), Expect = 2.7e-63, Sum P(2) = 2.7e-63
Identities = 66/137 (48%), Positives = 85/137 (62%)
Query: 285 VVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNN 344
VVAT AFGMGI+K D+R VIHYGAPK++ +YYQEIGRAGRDGL S C+ + D N
Sbjct: 770 VVATVAFGMGINKSDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHVLWMPGDMALNK 829
Query: 345 MIFQPNLNDSE-IQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQV-PPDKC 402
I N + SE + + MM ++EKYL CRRK +L HF+ + S + +C
Sbjct: 830 FIL--NQSKSERFRSYKIDMMAKMEKYLNSTKCRRKLILCHFEDKRLRKVTSGILGSSQC 887
Query: 403 CDNCR---HNEMLELEQ 416
CDNCR + E LE+ Q
Sbjct: 888 CDNCRSGVNEEDLEVLQ 904
Score = 188 (71.2 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 37/67 (55%), Positives = 48/67 (71%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 120
+VVYMTPE+ + N L ++ R V LIA+DEAHC+SQWGHDFR +YR L +L+ LP
Sbjct: 532 RVVYMTPEFCSGNIPLLVQLDRTVGLSLIAVDEAHCISQWGHDFRSAYRELGKLKKNLPT 591
Query: 121 VPILFLS 127
VP L L+
Sbjct: 592 VPFLALT 598
>UNIPROTKB|F1PZR3 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
Uniprot:F1PZR3
Length = 1499
Score = 656 (236.0 bits), Expect = 4.1e-63, P = 4.1e-63
Identities = 132/281 (46%), Positives = 180/281 (64%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIA+DEAHC+S+WGHDFR S+R L L+ LP VPI+A+TATA+ + +DI L L+
Sbjct: 720 ITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDIVRCLNLK 779
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKL----TNFENQFEGSTIIYCPTKVICEKV 247
+P I TGFDRPNLYL K I+ DL + T+ +FEG TIIYCP++ E+V
Sbjct: 780 NPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTSSIWEFEGPTIIYCPSRKTTEQV 839
Query: 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307
L + + YHA + +K R+EIH F++D I+ VVAT AFGMGI+K D+R VIHYG
Sbjct: 840 TAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIHYG 899
Query: 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRV 367
APK++ +YYQEIGRAGRDGL S C+ + AD N + + + + MM ++
Sbjct: 900 APKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLS-EITSEKFRLYKLKMMAKM 958
Query: 368 EKYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
EKYL CRR+ +L+HF+ + A + ++CCDNCR
Sbjct: 959 EKYLHSTRCRRQLILSHFEDKQLRKASVGIMGTEQCCDNCR 999
Score = 186 (70.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 53/164 (32%), Positives = 84/164 (51%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 120
++VY+TPE+ + N L ++ I LIA+DEAHC+S+WGHDFR S+R L L+ LP
Sbjct: 695 RIVYITPEFCSGNLFLLQQLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPS 754
Query: 121 VPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180
VPI+ L+ I D C++ P C R P++ + T + +
Sbjct: 755 VPIVALTATASSS-IREDIVRCLNLKN----PQITCTGFDR---PNLYLEVRRKTGS--I 804
Query: 181 IDDICTSLMLRDPNIINTGFDRPNLYLAASVKQ-DDIMADLRKL 223
+ D+ L+ + +I F+ P + S K + + A+LRKL
Sbjct: 805 LQDLDQFLVQKTSSIWE--FEGPTIIYCPSRKTTEQVTAELRKL 846
>UNIPROTKB|F1PUF8 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
OMA:TERICLM Uniprot:F1PUF8
Length = 1574
Score = 656 (236.0 bits), Expect = 4.6e-63, P = 4.6e-63
Identities = 132/281 (46%), Positives = 180/281 (64%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I LIA+DEAHC+S+WGHDFR S+R L L+ LP VPI+A+TATA+ + +DI L L+
Sbjct: 752 ITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIREDIVRCLNLK 811
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKL----TNFENQFEGSTIIYCPTKVICEKV 247
+P I TGFDRPNLYL K I+ DL + T+ +FEG TIIYCP++ E+V
Sbjct: 812 NPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTSSIWEFEGPTIIYCPSRKTTEQV 871
Query: 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307
L + + YHA + +K R+EIH F++D I+ VVAT AFGMGI+K D+R VIHYG
Sbjct: 872 TAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKADIRKVIHYG 931
Query: 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRV 367
APK++ +YYQEIGRAGRDGL S C+ + AD N + + + + MM ++
Sbjct: 932 APKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLS-EITSEKFRLYKLKMMAKM 990
Query: 368 EKYLELRTCRRKYLLNHFKGSSVTVAESQVP-PDKCCDNCR 407
EKYL CRR+ +L+HF+ + A + ++CCDNCR
Sbjct: 991 EKYLHSTRCRRQLILSHFEDKQLRKASVGIMGTEQCCDNCR 1031
Score = 186 (70.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 53/164 (32%), Positives = 84/164 (51%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 120
++VY+TPE+ + N L ++ I LIA+DEAHC+S+WGHDFR S+R L L+ LP
Sbjct: 727 RIVYITPEFCSGNLFLLQQLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPS 786
Query: 121 VPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180
VPI+ L+ I D C++ P C R P++ + T + +
Sbjct: 787 VPIVALTATASSS-IREDIVRCLNLKN----PQITCTGFDR---PNLYLEVRRKTGS--I 836
Query: 181 IDDICTSLMLRDPNIINTGFDRPNLYLAASVKQ-DDIMADLRKL 223
+ D+ L+ + +I F+ P + S K + + A+LRKL
Sbjct: 837 LQDLDQFLVQKTSSIWE--FEGPTIIYCPSRKTTEQVTAELRKL 878
>WB|WBGene00006944 [details] [associations]
symbol:wrn-1 species:6239 "Caenorhabditis elegans"
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
"response to ionizing radiation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005662 "DNA replication factor A complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
Length = 1056
Score = 598 (215.6 bits), Expect = 2.3e-57, P = 2.3e-57
Identities = 135/307 (43%), Positives = 178/307 (57%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELR--LPLPDVPILAVTATATPVVIDDICTSLM 189
I L+AIDEAHCVSQWGHDFR SYR L+E+R L ++P++A+TATAT V DD+ +L
Sbjct: 342 ISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALTATATVRVRDDVIANLR 401
Query: 190 LRDPNIINTGFDRPNLYLAASVKQDDIMADL---RKLTNFENQ-FEGSTIIYCPTKVICE 245
LR P I T FDR NLY++ +D + DL K + + F G TIIYC TK + +
Sbjct: 402 LRKPLITTTSFDRKNLYISVHSSKD-MAEDLGLFMKTDEVKGRHFGGPTIIYCQTKQMVD 460
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
V VL R G+++ YHA ++ QR++ H F++D I +VAT AFGMGIDKPDVR VIH
Sbjct: 461 DVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAFGMGIDKPDVRNVIH 520
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMK 365
YG P ++ +YYQEIGRAGRDG S+C F+ D + + E+ E+ M++
Sbjct: 521 YGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNSQQKEEVVENLTMMLR 580
Query: 366 RVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLELEQVPRGGRMVV 425
++E L CRR LL HF S Q CCD C EML Q + V
Sbjct: 581 QLELVLTTVGCRRYQLLKHFDPSYAKPPTMQAD---CCDRC--TEMLNGNQDSSSSIVDV 635
Query: 426 ENSEVWM 432
W+
Sbjct: 636 TTESKWL 642
Score = 163 (62.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 37/84 (44%), Positives = 56/84 (66%)
Query: 51 SQVPPDKCCDNCRQV--VYMTPEYVTNNTSF--LSRIPR-IVLIAIDEAHCVSQWGHDFR 105
+Q+ D+ +N ++ +YM+PE VT+ L+ + I L+AIDEAHCVSQWGHDFR
Sbjct: 302 TQIEWDQVANNMHRIRFIYMSPEMVTSQKGLELLTSCRKHISLLAIDEAHCVSQWGHDFR 361
Query: 106 PSYRCLSELR--LPLPDVPILFLS 127
SYR L+E+R L ++P++ L+
Sbjct: 362 NSYRHLAEIRNRSDLCNIPMIALT 385
>TIGR_CMR|BA_2818 [details] [associations]
symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
DNASU:1085972 EnsemblBacteria:EBBACT00000011651
EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
BioCyc:BANT260799:GJAJ-2691-MONOMER
BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
Length = 705
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 118/298 (39%), Positives = 166/298 (55%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP-ILAVTATATPVVIDDICTSLM 189
+I +IAIDEAHC+SQWGHDFRPSY + + LP+ P +LA+TATATP V DDIC +L
Sbjct: 131 KIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEEPLVLALTATATPQVRDDICNTLG 190
Query: 190 LRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCD 249
+ N I T F+R NL + +K D A L +NQ E S IIY T+ + +++ +
Sbjct: 191 INQENTIMTTFERENLSFSV-IKGQDRNAYLADYIR-QNQKE-SGIIYAATRKVVDQLYE 247
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L + G+ YHA +S R E LF++D + V+VAT AFGMGIDK ++R VIHY P
Sbjct: 248 DLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYVIHYQLP 307
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEK 369
K++ +YYQE GRAGRDGL S C Y + D + ++ +S + + +
Sbjct: 308 KNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSIGESRFSNELEKLQNMTD- 366
Query: 370 YLELRTCRRKYLLNHFKGSSVTVAESQVPPDKC--CDNCRHNEMLELEQVPRGGRMVV 425
Y C + ++L +F + P + C C NC N E V R +MV+
Sbjct: 367 YCHTEQCLQSFILQYF---------GEEPKEDCGRCGNCTDNR--ESIDVTRESQMVL 413
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 44 SSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRI--PRIVLIAIDEAHCVSQWG 101
SS+++ E+ ++ Y+ PE + ++ F+ ++ +I +IAIDEAHC+SQWG
Sbjct: 89 SSISITEANQRIQLAKQGHYKLFYVAPERL-DSMEFVDQLIDMKIPMIAIDEAHCISQWG 147
Query: 102 HDFRPSYRCLSELRLPLPDVPIL 124
HDFRPSY + + LP+ P++
Sbjct: 148 HDFRPSYLHIHRILDYLPEEPLV 170
>DICTYBASE|DDB_G0292130 [details] [associations]
symbol:blm "Bloom syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
Uniprot:Q54DM3
Length = 1259
Score = 510 (184.6 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 115/277 (41%), Positives = 156/277 (56%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPN 194
I IDEAHCVSQWGHDFRP Y+ LS LR P VPILA+TATAT V +D+ +L +R+P
Sbjct: 651 IVIDEAHCVSQWGHDFRPDYKELSILRRKFPKVPILALTATATERVRNDVIYNLSMRNPV 710
Query: 195 IINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254
F+RPNL K ++ D+ K + + S I+YC +K CE V L
Sbjct: 711 CFKQSFNRPNLIYQVLKKTKQVVDDMSKFIH-STYPDKSGIVYCISKYDCENVAKRLREL 769
Query: 255 GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSA 314
I YHA + +R ++ + K IKV+VAT AFGMGI+K DVR VIH+ PK L
Sbjct: 770 KISAAHYHAGLENDERAKVQANWQKGRIKVIVATIAFGMGINKADVRFVIHHSVPKSLEG 829
Query: 315 YYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHS----KTMMKRVEKY 370
YYQE GRAGRDG S C ++ AD +N+++ Q + + H+ + + ++ Y
Sbjct: 830 YYQESGRAGRDGGISHCLLYFSWADKLRNDLLIQNSFTSGQGSSHNTRETRDSLNKMVNY 889
Query: 371 LELRT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
E T CRR+ L +F G + + + K CDNC
Sbjct: 890 CENETDCRRQLQLAYF-GENFEKSGCK----KTCDNC 921
Score = 160 (61.4 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 34/70 (48%), Positives = 44/70 (62%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRI------VLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + S + + + I IDEAHCVSQWGHDFRP Y+ LS LR
Sbjct: 620 RLLYLTPERVVKSDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDFRPDYKELSILRRK 679
Query: 118 LPDVPILFLS 127
P VPIL L+
Sbjct: 680 FPKVPILALT 689
Score = 40 (19.1 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 12 IQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSS 45
+ ++S ++K ++ L ++K L N KGSS
Sbjct: 240 VNKNSSDLVKTIKSDLYDLGIKKKNLKNQKKGSS 273
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 307 GAPKD-LSAYYQEIGRAGRDGLSSVCYTFYKTADFTK 342
G P + Y + I +A D LS Y+F K++ F K
Sbjct: 1135 GLPSQKIDRYGKSIIQAINDFLSDTPYSFDKSS-FQK 1170
>TAIR|locus:2127998 [details] [associations]
symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
"3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
Length = 713
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 117/289 (40%), Positives = 160/289 (55%)
Query: 134 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
LIAIDEAHC+S WGHDFRPSYR LS LR L DVP+LA+TATA P V D+ SL LR+P
Sbjct: 159 LIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNP 218
Query: 194 NIINTGFDRPNLYLAASVKQ--DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVL 251
++ + F+RPN++ K D+ DL L IIYC + C+ + L
Sbjct: 219 LVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKSCGNI--CAIIYCLERTTCDDLSVHL 276
Query: 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD 311
S GI + YHA ++ K R + ++ +++VAT AFGMGIDK DVR V H+ PK
Sbjct: 277 SSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKS 336
Query: 312 LSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTM-MKRVEKY 370
+ ++YQE GRAGRD L S +Y D K + + + N T +++ Y
Sbjct: 337 MESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSSSSKKPTSDFEQIVTY 396
Query: 371 LELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH-NEMLE-LEQV 417
E CRRK +L F G V + + K CD C+H N++ LE++
Sbjct: 397 CEGSGCRRKKILESF-GEEFPVQQCK----KTCDACKHPNQVAHCLEEL 440
Score = 171 (65.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 38/83 (45%), Positives = 53/83 (63%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV------LIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + F+ ++ ++ LIAIDEAHC+S WGHDFRPSYR LS LR
Sbjct: 130 RLLYVTPELIATK-GFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDS 188
Query: 118 LPDVPILFLSRI--PRIVLIAID 138
L DVP+L L+ P++ ID
Sbjct: 189 LADVPVLALTATAAPKVQKDVID 211
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 509 (184.2 bits), Expect = 1.9e-47, P = 1.9e-47
Identities = 115/301 (38%), Positives = 171/301 (56%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
++ I +DEAHCVS WGHDFRP Y+ L + PD+P++A+TATA+ V DI +L L
Sbjct: 801 KLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATASEQVRMDIIHNLEL 860
Query: 191 RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGST-IIYCPTKVICEKVCD 249
++P + F+R NLY + K + + ++ +++F+ T IIYC +K CE+
Sbjct: 861 KEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAV--KSRFKNQTGIIYCHSKKSCEQTSA 918
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
+ RNGI+ YHA + +R + + D I+V+ AT AFGMGIDKPDVR V H+ P
Sbjct: 919 QMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGMGIDKPDVRFVYHFTVP 978
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLN-DSEIQEHSKTMMKRVE 368
+ L YYQE GRAGRDG S C T++ D + Q + N D E +E +++V
Sbjct: 979 RTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNLDRENKEKHLNKLQQVM 1038
Query: 369 KYLELRT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH--NEMLELEQVPRGGRMVV 425
Y + T CRRK +L++F +S++ K CDNCR+ N + E V + +V
Sbjct: 1039 AYCDNVTDCRRKLVLSYFNEDF----DSKLC-HKNCDNCRNSANVINEERDVTEPAKKIV 1093
Query: 426 E 426
+
Sbjct: 1094 K 1094
Score = 141 (54.7 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 65 VVYMTPEYVTNNTSF---LSRI---PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+VY++PE ++ + +SR+ ++ I +DEAHCVS WGHDFRP Y+ L +
Sbjct: 775 LVYISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREY 834
Query: 119 PDVPILFLS 127
PD+P++ L+
Sbjct: 835 PDIPMIALT 843
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 113/269 (42%), Positives = 146/269 (54%)
Query: 125 FLSRIP--RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVID 182
FLSR+ ++ L+AIDEAHCVSQWGHDFRP Y L ELR P VP +A+TATA
Sbjct: 123 FLSRLREVKLALVAIDEAHCVSQWGHDFRPEYLRLGELREYFPKVPFIALTATADKQTRQ 182
Query: 183 DICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNF-ENQFEGSTIIYCPTK 241
DI L L N+ F+RPN+ KQ +L NF +++ I+YC ++
Sbjct: 183 DILQRLRLTKANVHIASFNRPNIRYTLLEKQKSY----NQLVNFLKDRKADFGIVYCLSR 238
Query: 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVR 301
E+V L +G PYHA + QR + F +D + ++VAT AFGMGIDKP+VR
Sbjct: 239 NRVEEVAAKLQADGYSALPYHAGLPAAQRGKTQEAFQRDDVNIIVATIAFGMGIDKPNVR 298
Query: 302 CVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLND--SEIQEH 359
V+HY PK + YYQE GRAGRDGL S Y D + N+ I+ H
Sbjct: 299 FVVHYDLPKHIEGYYQETGRAGRDGLPSEALLLYGLRDIAVIKSFIENGNNEIRKRIELH 358
Query: 360 SKTMMKRVEKYLELRTCRRKYLLNHFKGS 388
M + E RTCRR+ LLN+F S
Sbjct: 359 KLNCMSA---FAEARTCRRRVLLNYFNES 384
Score = 182 (69.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 40/86 (46%), Positives = 56/86 (65%)
Query: 44 SSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIP--RIVLIAIDEAHCVSQWG 101
S++T AE++ + +N ++Y+ PE + SFLSR+ ++ L+AIDEAHCVSQWG
Sbjct: 89 STLTEAEARKNLARLHNNELDLLYIAPERLMTE-SFLSRLREVKLALVAIDEAHCVSQWG 147
Query: 102 HDFRPSYRCLSELRLPLPDVPILFLS 127
HDFRP Y L ELR P VP + L+
Sbjct: 148 HDFRPEYLRLGELREYFPKVPFIALT 173
Score = 39 (18.8 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 192 DPNIINTGFDRPNLY-LAASVKQDDIMADLRKL 223
DP I G DR + Y + + Q++ + R+L
Sbjct: 436 DPRIKRAGHDRLSTYGIGKELSQNEWYSVFRQL 468
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 110/261 (42%), Positives = 150/261 (57%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
L IP I L AIDEAHCVSQWGHDFRP Y L LR P VP++A+TATA DI
Sbjct: 127 LREIP-IALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQTRGDIV 185
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNF-ENQFEGSTIIYCPTKVIC 244
T L LRD + TGFDRPN+ + KQ R+L F + + I+YC ++
Sbjct: 186 TRLGLRDAEMFVTGFDRPNIRYSVLEKQKPF----RQLEEFLATRPREAGIVYCLSRKRV 241
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
E+V + L G++ YHA ++ +R + F++D I+VVVAT AFGMGIDKP+VR V+
Sbjct: 242 EEVAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPNVRFVV 301
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMM 364
HY PK++ +YYQE GRAGRDGL + + D + + + N +++ +
Sbjct: 302 HYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGDIPVSRSLIESGGNPEQVRIELHKLN 361
Query: 365 KRVEKYLELRTCRRKYLLNHF 385
V + E CRR+ LL +F
Sbjct: 362 AMVG-FAEALVCRRRALLGYF 381
Score = 156 (60.0 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 65 VVYMTPEYVTNNTSFLSRIPRI--VLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP 122
++Y+ PE + + +FL R+ I L AIDEAHCVSQWGHDFRP Y L LR P VP
Sbjct: 110 LLYVAPERLMTD-AFLERLREIPIALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVP 168
Query: 123 ILFLS 127
++ L+
Sbjct: 169 MIALT 173
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 111/283 (39%), Positives = 159/283 (56%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
LS +P + +IA+DEAHC+SQWGHDFRP Y L +L+ P+VP++A+TATA DI
Sbjct: 147 LSHLP-LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHDIM 205
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICE 245
L L +P+ FDRPN+ K + +R L E Q IIYC ++ E
Sbjct: 206 QRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYL---ETQRGQCGIIYCGSRKKVE 262
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
+ + L N I+ YHA + +R + F +D +++VVAT AFGMGI+KP+VR V+H
Sbjct: 263 MLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 322
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT-KNNMIFQ-PNLNDSEIQEHSKTM 363
+ P+++ +YYQE GRAGRDGL + Y AD M+ + P+ +++ H T
Sbjct: 323 FDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTA 382
Query: 364 MKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
M + E +TCRR+ LLN+F E + DK C NC
Sbjct: 383 MGA---FAEAQTCRRQVLLNYF-------GEYR---DKPCGNC 412
Score = 167 (63.8 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 121
+++Y++PE V F+ R+ + L IA+DEAHC+SQWGHDFRP Y L +L+ P+V
Sbjct: 129 KLLYVSPERVLT-AEFIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNV 187
Query: 122 PILFLS 127
P++ L+
Sbjct: 188 PVMALT 193
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 111/283 (39%), Positives = 159/283 (56%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
LS +P + +IA+DEAHC+SQWGHDFRP Y L +L+ P+VP++A+TATA DI
Sbjct: 147 LSHLP-LAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHDIM 205
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICE 245
L L +P+ FDRPN+ K + +R L E Q IIYC ++ E
Sbjct: 206 QRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYL---ETQRGQCGIIYCGSRKKVE 262
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
+ + L N I+ YHA + +R + F +D +++VVAT AFGMGI+KP+VR V+H
Sbjct: 263 MLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 322
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT-KNNMIFQ-PNLNDSEIQEHSKTM 363
+ P+++ +YYQE GRAGRDGL + Y AD M+ + P+ +++ H T
Sbjct: 323 FDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTA 382
Query: 364 MKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
M + E +TCRR+ LLN+F E + DK C NC
Sbjct: 383 MGA---FAEAQTCRRQVLLNYF-------GEYR---DKPCGNC 412
Score = 167 (63.8 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 121
+++Y++PE V F+ R+ + L IA+DEAHC+SQWGHDFRP Y L +L+ P+V
Sbjct: 129 KLLYVSPERVLT-AEFIERLSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNV 187
Query: 122 PILFLS 127
P++ L+
Sbjct: 188 PVMALT 193
>TIGR_CMR|SO_4241 [details] [associations]
symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
ProtClustDB:CLSK907564 Uniprot:Q8E9M8
Length = 607
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 112/286 (39%), Positives = 164/286 (57%)
Query: 125 FLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVID 182
F+ R+ + L AIDEAHC+SQWGHDFRP Y L +L+ P VP++A+TATA
Sbjct: 131 FIERMQSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQ 190
Query: 183 DICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGST-IIYCPTK 241
+IC L + +P + + FDRPN+ + K + +L F Q GS+ IIYC ++
Sbjct: 191 NICERLGI-NPFKLLSSFDRPNIRYTVAEK----LNAANQLRQFLLQQNGSSGIIYCSSR 245
Query: 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVR 301
++V + L+ G + YHA ++ ++R E+ F+KD I +VVAT AFGMGI+K +VR
Sbjct: 246 RRVDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVR 305
Query: 302 CVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK-NNMIFQPNLNDSEIQEHS 360
V+HY PK + AYYQE GRAGRDGL + + + AD + ++I Q + E
Sbjct: 306 FVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVEFH 365
Query: 361 KTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
K + + + E +TCRR+ LL++F ES + P CD C
Sbjct: 366 K--LNTMAAFAEAQTCRRQVLLHYFD-------ESALEPCGNCDIC 402
Score = 155 (59.6 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 121
+++Y++PE + F+ R+ + L AIDEAHC+SQWGHDFRP Y L +L+ P V
Sbjct: 117 KLLYVSPERLLT-ADFIERMQSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHV 175
Query: 122 PILFLS 127
P++ L+
Sbjct: 176 PMMALT 181
>UNIPROTKB|O34748 [details] [associations]
symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
ProteinModelPortal:O34748 SMR:O34748
EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
TIGRFAMs:TIGR01389 Uniprot:O34748
Length = 591
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 113/298 (37%), Positives = 167/298 (56%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP-ILAVTATATPVVIDDICTSLML 190
+ L+AIDEAHC+SQWGHDFRPSYR + L L D P I+A+TATATP V DDIC L +
Sbjct: 133 VPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATPEVHDDICKQLHI 192
Query: 191 RDPNIINTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCD 249
+ N + TGF R NL + + D D + N N+ E I+Y T+ +++ +
Sbjct: 193 QKENTVYTGFSRENLTFKVVKGENKDRFID-EYVQN--NRHEAG-IVYTATRKEADRIYE 248
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L RN ++ YH ++ RKE F+ D ++V+VAT AFGMGIDK ++R V+H P
Sbjct: 249 RLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIP 308
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEK 369
KD+ +YYQE GRAGRDGL+S C + D + + + ++ + ++ K + + V+
Sbjct: 309 KDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVD- 367
Query: 370 YLELRTCRRKYLLNHFKGSSVTVAESQVPPDKC--CDNCRHNEMLELEQVPRGGRMVV 425
Y C ++++L +F E + PD C C NC + V R +MV+
Sbjct: 368 YCHTEDCLQRFILMYF-------GEKE--PDACGQCGNC--TDTRAAHDVTREAQMVL 414
Score = 151 (58.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRI--VLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 121
++ Y+TPE +T+ F+ + I L+AIDEAHC+SQWGHDFRPSYR + L L D
Sbjct: 110 KLFYITPERLTS-IEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDK 168
Query: 122 PIL 124
P++
Sbjct: 169 PVI 171
>ASPGD|ASPL0000045206 [details] [associations]
symbol:musN species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
Uniprot:G5EB35
Length = 1534
Score = 500 (181.1 bits), Expect = 2.0e-46, P = 2.0e-46
Identities = 115/298 (38%), Positives = 163/298 (54%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
L I ++ + IDEAHCVSQWGHDFRP Y+ + R +P VP++A+TATAT V D+
Sbjct: 822 LCSIQKLARVVIDEAHCVSQWGHDFRPDYKQIGAFRARIPGVPLMALTATATENVKVDVI 881
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQD-----DIMADLRKLTNFENQFEGSTIIYCPT 240
+L ++ + F+RPNL K D +AD K T + N+ G I+YC +
Sbjct: 882 HNLRMQGCEVFTQSFNRPNLTYEVRRKGKHAELLDSIADTIKST-YRNKC-G--IVYCLS 937
Query: 241 KVICEKVCDVLSRN-GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
+ CEKV + L N I+ YHA + + R + + V+VAT AFGMGIDKPD
Sbjct: 938 RNTCEKVAEALRTNYSIKAEHYHAGLDAETRARTQQRWQAGDVHVIVATIAFGMGIDKPD 997
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEH 359
VR VIH+ PK L YYQE GRAGRDG S CY ++ D + + + N + ++Q+
Sbjct: 998 VRFVIHHSIPKSLEGYYQETGRAGRDGRRSGCYLYFSHRDVSTMQSMIEKNEDSDDVQKG 1057
Query: 360 SKT-MMKRVEKYLE-LRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLELE 415
+T M+ V KY E CRR +L +F S + + CDNC+ + E++
Sbjct: 1058 RQTRMLNDVVKYCENANDCRRVQILAYFSESF-----KRQDCNASCDNCKSGDTFEVQ 1110
Score = 158 (60.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIVLI------AIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE ++ + + RI ++ I IDEAHCVSQWGHDFRP Y+ + R
Sbjct: 800 ELLYITPEMISKSHALTDRIEKLCSIQKLARVVIDEAHCVSQWGHDFRPDYKQIGAFRAR 859
Query: 118 LPDVPILFLS 127
+P VP++ L+
Sbjct: 860 IPGVPLMALT 869
>ZFIN|ZDB-GENE-070702-5 [details] [associations]
symbol:blm "Bloom syndrome" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
regulation of mitotic recombination" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
Length = 1420
Score = 488 (176.8 bits), Expect = 4.3e-46, Sum P(2) = 4.3e-46
Identities = 117/303 (38%), Positives = 158/303 (52%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPN 194
+ IDEAHCVSQWGHDFRP Y+ L ELR P+VPI+A+TATATP V DI L + P
Sbjct: 784 LVIDEAHCVSQWGHDFRPDYKRLHELRRMFPNVPIMALTATATPRVQKDILNQLAMTRPQ 843
Query: 195 IINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQF-EGSTIIYCPTKVICEKVCDVLSR 253
+ F+R NL + K+ D + + + S I+YC ++ C+ + D L R
Sbjct: 844 VFTMSFNRNNLKYSVLPKKPK-KVDEECIQWIKKYYPRDSGIVYCLSRNDCDTLADSLQR 902
Query: 254 NGIQNRPYHAHISLKQRKEIHGLFV-KDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDL 312
GI YHA +S R+ + ++ +D +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 903 AGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCATIAFGMGIDKPDVRYVIHASLPKSV 962
Query: 313 SAYYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKRVEKY 370
YYQE GRAGRDG S C FY +D K + + N H + V
Sbjct: 963 EGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLIAMDKDGNQQSKATHINNLHSMVHFC 1022
Query: 371 LELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC-RHNEMLE---LEQVPRGGRMVVE 426
+ CRR LL +F + + + P+ CDNC R N+ + V + R V +
Sbjct: 1023 ENVAECRRIQLLAYFGEHTFNTSFCKEHPEVICDNCARPNKYKSRNVTDDVKKIARFVQD 1082
Query: 427 NSE 429
N E
Sbjct: 1083 NCE 1085
Score = 162 (62.1 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 37/81 (45%), Positives = 50/81 (61%)
Query: 60 DNCRQVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSE 113
D +++Y TPE V + +S + + L+A IDEAHCVSQWGHDFRP Y+ L E
Sbjct: 749 DPAIKLLYATPEKVCASGRMISALQNLYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHE 808
Query: 114 LRLPLPDVPILFLSRI--PRI 132
LR P+VPI+ L+ PR+
Sbjct: 809 LRRMFPNVPIMALTATATPRV 829
Score = 38 (18.4 bits), Expect = 4.3e-46, Sum P(2) = 4.3e-46
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 41 FKGSSVTMAESQVPPDKC 58
F GS T+++ + DKC
Sbjct: 488 FNGSIQTLSKPESKTDKC 505
>CGD|CAL0004296 [details] [associations]
symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 492 (178.3 bits), Expect = 8.4e-46, P = 8.4e-46
Identities = 115/291 (39%), Positives = 167/291 (57%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
++ + IDEAHC+S WGHDFRP Y+ L + P VPI+A+TATA V DI +L +
Sbjct: 588 QLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPKVPIMALTATANEKVQMDILHNLKM 647
Query: 191 RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEG-STIIYCPTKVICEKVCD 249
+DP ++ F+R NL+ +K+ + + +++ ++F G S IIYC +K CE
Sbjct: 648 KDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKDY--ILSRFSGKSGIIYCHSKQSCEHTSM 705
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L+ G++ YHA +S +R I + ++ I+V+ AT AFGMGIDKPDVR VIH P
Sbjct: 706 KLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAFGMGIDKPDVRFVIHLYLP 765
Query: 310 KDLSAYYQEIGRAGRDGLSSVC--YTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRV 367
+ L YYQE GRAGRDG S C Y YK A +N + L++S + H +++V
Sbjct: 766 RTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLIQRDEELSESGRESHL-AKLRQV 824
Query: 368 EKYLELRT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNCR-HNEMLELEQ 416
+Y E T CRRK +L +F + A K CDNCR +N + +E+
Sbjct: 825 IQYCENTTDCRRKQVLQYFN-ETFDPANCH----KQCDNCRDYNHVTSVEK 870
Score = 131 (51.2 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 65 VVYMTPEYVTNNTSF---LSRI---PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+VY++PE + + ++++ ++ + IDEAHC+S WGHDFRP Y+ L +
Sbjct: 562 IVYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKF 621
Query: 119 PDVPILFLS 127
P VPI+ L+
Sbjct: 622 PKVPIMALT 630
>UNIPROTKB|Q5A5R4 [details] [associations]
symbol:SGS1 "Putative uncharacterized protein SGS1"
species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0044182 "filamentous growth of a population of
unicellular organisms" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 492 (178.3 bits), Expect = 8.4e-46, P = 8.4e-46
Identities = 115/291 (39%), Positives = 167/291 (57%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
++ + IDEAHC+S WGHDFRP Y+ L + P VPI+A+TATA V DI +L +
Sbjct: 588 QLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPKVPIMALTATANEKVQMDILHNLKM 647
Query: 191 RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEG-STIIYCPTKVICEKVCD 249
+DP ++ F+R NL+ +K+ + + +++ ++F G S IIYC +K CE
Sbjct: 648 KDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKDY--ILSRFSGKSGIIYCHSKQSCEHTSM 705
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L+ G++ YHA +S +R I + ++ I+V+ AT AFGMGIDKPDVR VIH P
Sbjct: 706 KLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAFGMGIDKPDVRFVIHLYLP 765
Query: 310 KDLSAYYQEIGRAGRDGLSSVC--YTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRV 367
+ L YYQE GRAGRDG S C Y YK A +N + L++S + H +++V
Sbjct: 766 RTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLIQRDEELSESGRESHL-AKLRQV 824
Query: 368 EKYLELRT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNCR-HNEMLELEQ 416
+Y E T CRRK +L +F + A K CDNCR +N + +E+
Sbjct: 825 IQYCENTTDCRRKQVLQYFN-ETFDPANCH----KQCDNCRDYNHVTSVEK 870
Score = 131 (51.2 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 65 VVYMTPEYVTNNTSF---LSRI---PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+VY++PE + + ++++ ++ + IDEAHC+S WGHDFRP Y+ L +
Sbjct: 562 IVYLSPERANKSNAMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKF 621
Query: 119 PDVPILFLS 127
P VPI+ L+
Sbjct: 622 PKVPIMALT 630
>UNIPROTKB|H0YNU5 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
Bgee:H0YNU5 Uniprot:H0YNU5
Length = 1286
Score = 492 (178.3 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 110/274 (40%), Positives = 149/274 (54%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFR Y+ ++ LR P VP++A+TATA P V DI T L + P +
Sbjct: 794 IDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVF 853
Query: 197 NTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNG 255
+ F+R NL Y K + D + + ++ S IIYC ++ C+ + D L R+G
Sbjct: 854 SMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD-SGIIYCLSRRECDTMADTLQRDG 912
Query: 256 IQNRPYHAHISLKQRKEIHGLFV-KDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSA 314
+ YHA +S R E+ ++ +D +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 913 LAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEG 972
Query: 315 YYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKRVEKYLE 372
YYQE GRAGRDG S C FY D T K ++ + + N + H + V
Sbjct: 973 YYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCEN 1032
Query: 373 LRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ CRR LL +F + + PD CDNC
Sbjct: 1033 ITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNC 1066
Score = 148 (57.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + +S + + L+A IDEAHCVSQWGHDFR Y+ ++ LR
Sbjct: 761 KLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQK 820
Query: 118 LPDVPILFLSRI--PRI 132
P VP++ L+ PR+
Sbjct: 821 FPSVPVMALTATANPRV 837
>UNIPROTKB|P54132 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
"replication fork processing" evidence=IDA] [GO:0000781
"chromosome, telomeric region" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
"lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IDA] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0000405
"bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0051782 "negative regulation of cell division"
evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
evidence=NAS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=NAS] [GO:0010165 "response to
X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
"helicase activity" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IMP] [GO:0000729 "DNA double-strand break processing"
evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
Uniprot:P54132
Length = 1417
Score = 492 (178.3 bits), Expect = 1.2e-45, P = 1.2e-45
Identities = 110/274 (40%), Positives = 149/274 (54%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFR Y+ ++ LR P VP++A+TATA P V DI T L + P +
Sbjct: 794 IDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVF 853
Query: 197 NTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNG 255
+ F+R NL Y K + D + + ++ S IIYC ++ C+ + D L R+G
Sbjct: 854 SMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD-SGIIYCLSRRECDTMADTLQRDG 912
Query: 256 IQNRPYHAHISLKQRKEIHGLFV-KDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSA 314
+ YHA +S R E+ ++ +D +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 913 LAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEG 972
Query: 315 YYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKRVEKYLE 372
YYQE GRAGRDG S C FY D T K ++ + + N + H + V
Sbjct: 973 YYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCEN 1032
Query: 373 LRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ CRR LL +F + + PD CDNC
Sbjct: 1033 ITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNC 1066
Score = 148 (57.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + +S + + L+A IDEAHCVSQWGHDFR Y+ ++ LR
Sbjct: 761 KLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQK 820
Query: 118 LPDVPILFLSRI--PRI 132
P VP++ L+ PR+
Sbjct: 821 FPSVPVMALTATANPRV 837
>UNIPROTKB|P15043 [details] [associations]
symbol:recQ species:83333 "Escherichia coli K-12"
[GO:0046914 "transition metal ion binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
[GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0017117 "single-stranded
DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
"DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
"SOS response" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
Genevestigator:P15043 Uniprot:P15043
Length = 609
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 107/275 (38%), Positives = 148/275 (53%)
Query: 133 VLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRD 192
VL+A+DEAHC+SQWGHDFRP Y L +LR P +P +A+TATA DI L L D
Sbjct: 141 VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND 200
Query: 193 PNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEG-STIIYCPTKVICEKVCDVL 251
P I + FDRPN+ K L +L + + G S IIYC ++ E L
Sbjct: 201 PLIQISSFDRPNIRYMLMEK----FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARL 256
Query: 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD 311
GI YHA + R ++ F +D +++VVAT AFGMGI+KP+VR V+H+ P++
Sbjct: 257 QSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 316
Query: 312 LSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEKYL 371
+ +YYQE GRAGRDGL + FY AD + ++Q+ + + + +
Sbjct: 317 IESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEK-PQGQLQDIERHKLNAMGAFA 375
Query: 372 ELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
E +TCRR LLN+F E + P CD C
Sbjct: 376 EAQTCRRLVLLNYF-------GEGRQEPCGNCDIC 403
Score = 154 (59.3 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRI--VLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 121
+++Y+ PE + + +FL + VL+A+DEAHC+SQWGHDFRP Y L +LR P +
Sbjct: 117 RLLYIAPERLMLD-NFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL 175
Query: 122 PILFLS 127
P + L+
Sbjct: 176 PFMALT 181
>MGI|MGI:1328362 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like"
species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
break processing" evidence=ISO] [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000800 "lateral element"
evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
"replication fork" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISO] [GO:0009378 "four-way junction
helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036310 "annealing
helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
cell differentiation" evidence=IMP] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IMP]
[GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IMP] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
GermOnline:ENSMUSG00000030528 Uniprot:O88700
Length = 1416
Score = 491 (177.9 bits), Expect = 1.5e-45, P = 1.5e-45
Identities = 113/276 (40%), Positives = 149/276 (53%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFR Y+ ++ LR P VP++A+TATA P V DI T L + P +
Sbjct: 802 IDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVF 861
Query: 197 NTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNG 255
+ F+R NL Y K + D + + ++ S IIYC ++ C+ + D L R G
Sbjct: 862 SMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD-SGIIYCLSRRECDTMADTLQREG 920
Query: 256 IQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSA 314
+ YHA +S R E+ H +D +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 921 LAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVIHASLPKSMEG 980
Query: 315 YYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKRVEKYLE 372
YYQE GRAGRDG S C FY D T K ++ + + N + H + V
Sbjct: 981 YYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDGNYHTKETHVNNLYSMVHYCEN 1040
Query: 373 LRTCRRKYLLNHF--KGSSVTVAESQVPPDKCCDNC 406
+ CRR LL +F KG + + PD CDNC
Sbjct: 1041 ITECRRIQLLAYFGEKGFNPDFCKKY--PDVSCDNC 1074
Score = 149 (57.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + +S + + L+A IDEAHCVSQWGHDFR Y+ ++ LR
Sbjct: 769 KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQK 828
Query: 118 LPDVPILFLSRI--PRI 132
P VP++ L+ PR+
Sbjct: 829 FPSVPVMALTATANPRV 845
>TAIR|locus:2074429 [details] [associations]
symbol:RECQI1 "RECQ helicase l1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0042631 "cellular response to water deprivation" evidence=IEP]
[GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
Length = 606
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 112/281 (39%), Positives = 159/281 (56%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
+DEAHCVSQWGHDFRP YR L L+ P VP++A+TATAT V D+ SL + ++
Sbjct: 334 VDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQDVLKSLRIPRAPVL 393
Query: 197 NTGFDRPNLYLAASVKQDDIMADLRKLTN--FENQFEGSTIIYCPTKVICEKVCDVLSRN 254
FDR NL VK + + L++L F++Q S I+YC +K C V L+
Sbjct: 394 KMSFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQ---SGIVYCLSKSECVDVAKFLNEK 450
Query: 255 -GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLS 313
++ YHA + KQR ++ + +++V AT AFGMGIDK DVR VIH K +
Sbjct: 451 CKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVE 510
Query: 314 AYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMM--KRVEKYL 371
+YYQE GRAGRDGL + C Y+ DF++ + + N + M K++++Y
Sbjct: 511 SYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLR-NGQGRNMDRFKSAMAQAKKMQQYC 569
Query: 372 ELRT-CRRKYLLNHFKGSSVT--VAESQVPPDKCCDNCRHN 409
EL+T CRR+ LL +F G S + +S + P CDNC +
Sbjct: 570 ELKTECRRQMLLEYF-GESFDRMICKSSLNP---CDNCERS 606
Score = 161 (61.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 61 NCRQVVYMTPEYVTNNTSFLSRI---PRIVLIA---IDEAHCVSQWGHDFRPSYRCLSEL 114
+C+ ++Y+TPE + ++SFL + R L+A +DEAHCVSQWGHDFRP YR L L
Sbjct: 299 SCK-LLYVTPEKIAGSSSFLETLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCL 357
Query: 115 RLPLPDVPILFLS 127
+ P VP++ L+
Sbjct: 358 KQNFPRVPVMALT 370
>UNIPROTKB|E2RS76 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
"positive regulation of alpha-beta T cell proliferation"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045120
"pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
"p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
Length = 1407
Score = 490 (177.5 bits), Expect = 2.0e-45, P = 2.0e-45
Identities = 112/275 (40%), Positives = 147/275 (53%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFR Y+ ++ LR P VP++A+TATA P V DI T L + P +
Sbjct: 783 IDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILQPQVF 842
Query: 197 NTGFDRPNL-YLAASVKQDDIMAD-LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254
+ F+R NL Y K + D L + + G IIYC ++ C+ + D L ++
Sbjct: 843 SMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYHPHDSG--IIYCLSRRECDTMADTLQKD 900
Query: 255 GIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLS 313
G+ YHA +S R E+ H +D +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 901 GLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 960
Query: 314 AYYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKRVEKYL 371
YYQE GRAGRDG S C FY D T K ++ + + N + H + V
Sbjct: 961 GYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDGNRHTRETHFNNLYSMVHYCE 1020
Query: 372 ELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ CRR LL +F S + PD CDNC
Sbjct: 1021 NITECRRIQLLAYFGESGFNPDFCKKYPDVSCDNC 1055
Score = 151 (58.2 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + LS + + L+A IDEAHCVSQWGHDFR Y+ ++ LR
Sbjct: 750 KLLYVTPEKVCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQK 809
Query: 118 LPDVPILFLSRI--PRI 132
P VP++ L+ PR+
Sbjct: 810 FPSVPVMALTATANPRV 826
>UNIPROTKB|J9PB86 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
Length = 1420
Score = 490 (177.5 bits), Expect = 2.0e-45, P = 2.0e-45
Identities = 112/275 (40%), Positives = 147/275 (53%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFR Y+ ++ LR P VP++A+TATA P V DI T L + P +
Sbjct: 796 IDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILQPQVF 855
Query: 197 NTGFDRPNL-YLAASVKQDDIMAD-LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254
+ F+R NL Y K + D L + + G IIYC ++ C+ + D L ++
Sbjct: 856 SMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYHPHDSG--IIYCLSRRECDTMADTLQKD 913
Query: 255 GIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLS 313
G+ YHA +S R E+ H +D +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 914 GLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVE 973
Query: 314 AYYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKRVEKYL 371
YYQE GRAGRDG S C FY D T K ++ + + N + H + V
Sbjct: 974 GYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDGNRHTRETHFNNLYSMVHYCE 1033
Query: 372 ELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ CRR LL +F S + PD CDNC
Sbjct: 1034 NITECRRIQLLAYFGESGFNPDFCKKYPDVSCDNC 1068
Score = 151 (58.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + LS + + L+A IDEAHCVSQWGHDFR Y+ ++ LR
Sbjct: 763 KLLYVTPEKVCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQK 822
Query: 118 LPDVPILFLSRI--PRI 132
P VP++ L+ PR+
Sbjct: 823 FPSVPVMALTATANPRV 839
>UNIPROTKB|E1BQ04 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IEA]
[GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
Length = 1417
Score = 488 (176.8 bits), Expect = 3.2e-45, P = 3.2e-45
Identities = 112/293 (38%), Positives = 154/293 (52%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFRP Y+ ++ LR P VP++A+TATA P V DI T L + P +
Sbjct: 794 IDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMALTATANPRVQKDILTQLKILRPQVF 853
Query: 197 NTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNG 255
+ F+R NL Y K + D + + + S IIYC ++ C+ + + L +G
Sbjct: 854 SMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD-SGIIYCLSRRECDTMAETLQNDG 912
Query: 256 IQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSA 314
+ YHA +S R E+ H +D +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 913 LAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEG 972
Query: 315 YYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTMMKRVEKYLE 372
YYQE GRAGRDG S C FY D T K ++ + + N + H + V
Sbjct: 973 YYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEKDGNRHTRETHFNNLYSMVHYCEN 1032
Query: 373 LRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLELEQVPRGGRMVV 425
+ CRR LL +F + + PD CDNC + + + V + +V
Sbjct: 1033 ITECRRIQLLAYFGENEFNPHFCKKYPDVSCDNCYKTKDFKTKDVTEDVKNIV 1085
Score = 156 (60.0 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + +S + + L+A IDEAHCVSQWGHDFRP Y+ ++ LR
Sbjct: 761 KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQK 820
Query: 118 LPDVPILFLSRI--PRI 132
P VP++ L+ PR+
Sbjct: 821 FPSVPVMALTATANPRV 837
Score = 45 (20.9 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 23/81 (28%), Positives = 33/81 (40%)
Query: 331 CYTFYKTADFTKNNMIFQPNLNDSE-IQEHSKTMMKRVEKYL-ELRTCRRKYLLNHFKGS 388
C YKT DF K + + N +QEHS + R K++ L++ F GS
Sbjct: 1063 CDNCYKTKDF-KTKDVTEDVKNIVRFVQEHSSSQGTRNIKHIGPSGRFTMNMLVDIFLGS 1121
Query: 389 SVTVAESQVPPDKCCDNCRHN 409
+S + K RHN
Sbjct: 1122 KSAKIQSGIF-GKGSTYSRHN 1141
Score = 38 (18.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 204 NLYLAASVKQDDIMADLRKLTNFENQFEGS 233
N Y K D+ D++ + F + S
Sbjct: 1065 NCYKTKDFKTKDVTEDVKNIVRFVQEHSSS 1094
>DICTYBASE|DDB_G0272384 [details] [associations]
symbol:DDB_G0272384 "Bloom syndrome-like protein"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
OMA:YQQTGRA Uniprot:Q55A06
Length = 973
Score = 467 (169.5 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 100/222 (45%), Positives = 130/222 (58%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
R+ + +DEAHC+S+WGH FRP YR +S R P VPI A TA+ATP V DI SL +
Sbjct: 600 RLRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFPSVPISAFTASATPNVEIDIKNSLKM 659
Query: 191 RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFEN-QFEGST-IIYCPTKVICEKVC 248
+P IN+ F RPNL KQ D + L+ + NF + ++ ST IIYC T CE V
Sbjct: 660 VNPITINSSFLRPNLLYQVRQKQSDEESLLKDIYNFISFKYPNSTGIIYCATVRECEIVA 719
Query: 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGA 308
D LS G+ + YHA +S QR ++ + K+V T AFGMGIDK D R VIH+
Sbjct: 720 DYLSERGLSSNFYHAKLSNTQRSKLQKDWTNGEFKIVCTTIAFGMGIDKGDTRFVIHHSM 779
Query: 309 PKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPN 350
P+ + +YYQ+ GRAGRDG S C FY +D + I N
Sbjct: 780 PQSMESYYQQTGRAGRDGKHSDCLLFYNKSDLMRFKHIISLN 821
Score = 142 (55.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 60 DNCR-QVVYMTPEYVTNNTSFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLS 112
+ C+ +++Y+TPE + + FL + R+ + +DEAHC+S+WGH FRP YR +S
Sbjct: 569 ETCKLKLIYITPERLAQS-EFLHLLDQLYDQGRLRRLVVDEAHCISEWGHSFRPKYRLIS 627
Query: 113 ELRLPLPDVPI 123
R P VPI
Sbjct: 628 TFRDRFPSVPI 638
Score = 44 (20.5 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 354 SEIQEHSKT--MMKRVEKYLELRT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHN 409
++IQ+ S M+ V + ++ CRR LLN+F +S + D C N N
Sbjct: 871 NKIQQTSTKLEMLDSVASFCSTQSKCRRVTLLNYFGENSKSCGNMC---DICISNSNSN 926
>WB|WBGene00019334 [details] [associations]
symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
NextBio:887386 Uniprot:Q9TXJ8
Length = 631
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 114/282 (40%), Positives = 153/282 (54%)
Query: 134 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
LIAIDE HC SQWGHDFR Y L+ L+ VPIL +TATAT V+DD+ L ++
Sbjct: 233 LIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKDMLGIQAA 292
Query: 194 NIINTGFDRPNLYLAASVK---QDDIMADLRKLTNFENQFEGST-IIYCPTKVICEKVCD 249
GF+R NL K +D+ ++ K + F G T IIYC ++ CEKV
Sbjct: 293 LTFRAGFNRSNLKYKVVQKPGSEDECTEEIAK--TIKRDFAGQTGIIYCLSRNDCEKVAK 350
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L +GI+ + YHA++ R H ++ I+V+VAT AFGMGIDKP+VR VIH+ P
Sbjct: 351 ALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNVRFVIHHSLP 410
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLNDSEIQEHSKTMMKRVE 368
K + YYQE GRAGRDG + C +Y+ AD F +++M+ Q IQ + V
Sbjct: 411 KSIENYYQESGRAGRDGQPATCILYYRLADIFKQSSMVQQERTG---IQN----LYNMVR 463
Query: 369 KYLELRTCRRKYLLNHFKGSSVTVAESQVPP--DKCCDNCRH 408
+ TCRR L HF+ E+ P K CD C +
Sbjct: 464 YAADSSTCRRVKLAEHFE-------EAWEPSWCQKQCDTCEN 498
Score = 139 (54.0 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 60 DNCRQVVYMTPEYVTNNTSFLSRIPR------IVLIAIDEAHCVSQWGHDFRPSYRCLSE 113
D+ +++Y+TPE + + ++++ + + LIAIDE HC SQWGHDFR Y L+
Sbjct: 199 DSKFRLLYVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNV 258
Query: 114 LRLPLPDVPILFLS 127
L+ VPIL L+
Sbjct: 259 LKRQFKGVPILGLT 272
Score = 37 (18.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 343 NNMIFQPNLNDSEIQEHSKTMMKRVEKYL 371
N + + +++ E +KT ++ +E++L
Sbjct: 500 NGFVGTSSKESTDVSEAAKTTVRIIEEHL 528
>POMBASE|SPAC2G11.12 [details] [associations]
symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
"Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0000725
"recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IDA] [GO:0034065 "replication fork processing at rDNA
locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
recombination intermediates" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
GO:GO:0071140 Uniprot:Q09811
Length = 1328
Score = 486 (176.1 bits), Expect = 4.7e-45, P = 4.7e-45
Identities = 106/276 (38%), Positives = 155/276 (56%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPN 194
I IDEAHCVS WGHDFRP Y+ L LR +P +A+TATA +V DI +L + +
Sbjct: 648 IVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATANEIVKKDIINTLRMENCL 707
Query: 195 IINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254
+ + F+RPNL+ K+D + +L + + + E S IIYC ++ CE+V L +
Sbjct: 708 ELKSSFNRPNLFYEIKPKKD-LYTELYRFISNGHLHE-SGIIYCLSRTSCEQVAAKLRND 765
Query: 255 -GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLS 313
G++ YHA + +R+ I + K++VAT AFGMG+DK DVR VIH+ PK L
Sbjct: 766 YGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLE 825
Query: 314 AYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEKYLEL 373
YYQE GRAGRDG + C FY D + D+E +E + M+++V ++ E
Sbjct: 826 GYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGDAETKERQRQMLRQVIQFCEN 885
Query: 374 RT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH 408
+T CRRK +L +F G + + D CC+ +
Sbjct: 886 KTDCRRKQVLAYF-GENFDKVHCRKGCDICCEEATY 920
Score = 133 (51.9 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 31/70 (44%), Positives = 43/70 (61%)
Query: 64 QVVYMTPEYVTNN---TSFLSRI-PRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + +N T L + R +L I IDEAHCVS WGHDFRP Y+ L LR
Sbjct: 617 KLLYVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDR 676
Query: 118 LPDVPILFLS 127
+P + L+
Sbjct: 677 YQGIPFMALT 686
>TAIR|locus:2197394 [details] [associations]
symbol:RECQ4A species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
response to cold" evidence=IEP] [GO:0071215 "cellular response to
abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
"3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
Uniprot:Q8L840
Length = 1188
Score = 484 (175.4 bits), Expect = 6.0e-45, P = 6.0e-45
Identities = 114/301 (37%), Positives = 161/301 (53%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFRP Y+ L L+ P++P+LA+TATAT V +D+ +L L + +
Sbjct: 580 IDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF 639
Query: 197 NTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGI 256
F+RPNL+ + K + D+ K EN F+ IIYC +++ CEKV + L G
Sbjct: 640 RQSFNRPNLWYSVVPKTKKCLEDIDKFIK-ENHFDECGIIYCLSRMDCEKVSERLQEFGH 698
Query: 257 QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYY 316
+ YH + +QR I + KD I ++ AT AFGMGI+KPDVR VIH+ PK + Y+
Sbjct: 699 KAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 758
Query: 317 QEIGRAGRDGLSSVCYTFYKTADFTK-NNMIFQPNLNDS-------EIQEHSKTMMKRVE 368
QE GRAGRDG S C +Y D+ + +MI Q ++ S + + + E
Sbjct: 759 QECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRVASSGRLLETNTE 818
Query: 369 KYLEL-RTCRRKYLLNHFKGSSVTVAES--QVPPDKCCDNCRHNEMLELEQVPRGGRMVV 425
L + R C + F V + E K CDNC ++ L + V R +V
Sbjct: 819 NLLRMVRYCENEVECRRFL-QLVHLGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITRQLV 877
Query: 426 E 426
E
Sbjct: 878 E 878
Score = 158 (60.7 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + S L + + L+A IDEAHCVSQWGHDFRP Y+ L L+
Sbjct: 547 KLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQK 606
Query: 118 LPDVPILFLS 127
P++P+L L+
Sbjct: 607 FPNIPVLALT 616
>DICTYBASE|DDB_G0268512 [details] [associations]
symbol:wrn "Werner syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
OMA:FLFNKTE Uniprot:B0G0Y4
Length = 1136
Score = 465 (168.7 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 105/246 (42%), Positives = 143/246 (58%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
L R +I L AIDEAHC+SQWGH FR SYR L ELR P VPI+AVTATAT + DI
Sbjct: 410 LVRNEKICLFAIDEAHCISQWGHSFRESYRKLQELRNQFPTVPIMAVTATATKSIESDII 469
Query: 186 TSLMLRDPN--IINTGFDRPNLYLAASVKQDDIMADLRKLTNF--ENQ-----FEGSTII 236
+L + + N + + +RPN+Y +K + D + + + E + STII
Sbjct: 470 NNLGIGNGNCKMFKSSKNRPNIYYKVIIKDKLVSNDFKMILDILLETRKTIGVVSNSTII 529
Query: 237 YCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGID 296
YC T I ++ L N IQ+ YH+ + KQR E F+ + +V+VAT AFGMGID
Sbjct: 530 YCTTIQIANELNRFLCDNKIQSNVYHSQLGDKQRDETLKNFLFNKTEVIVATIAFGMGID 589
Query: 297 KPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEI 356
K DVR +I+YGA K + +YQE GRAGRDGL S+ Y DF K++ + + N N ++
Sbjct: 590 KHDVRLIINYGASKSVEDFYQESGRAGRDGLQSLSLIIYSLQDFVKSSFLLRNNNNYNKY 649
Query: 357 QEHSKT 362
S +
Sbjct: 650 SSSSSS 655
Score = 170 (64.9 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 34/63 (53%), Positives = 41/63 (65%)
Query: 65 VVYMTPEYVTNNTSFLSRIPR---IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 121
+VY+TPE + N + + R I L AIDEAHC+SQWGH FR SYR L ELR P V
Sbjct: 392 LVYITPERIINEYQSIGELVRNEKICLFAIDEAHCISQWGHSFRESYRKLQELRNQFPTV 451
Query: 122 PIL 124
PI+
Sbjct: 452 PIM 454
Score = 44 (20.5 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 358 EHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
E+ K ++K E + CRR+ LL F + A + CDNC
Sbjct: 682 ENEK-LLKFKEILINKVKCRRQMLLEAFGEEFIIDANNGCAS---CDNC 726
>TAIR|locus:2197555 [details] [associations]
symbol:RECQL2 "RECQ helicase L2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
Genevestigator:Q9FT73 Uniprot:Q9FT73
Length = 705
Score = 469 (170.2 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 121/322 (37%), Positives = 179/322 (55%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
R+ LI+IDEAHC SQWGHDFRP Y+ LS L+ P VP++A+TATAT V +D+ ML
Sbjct: 210 RLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDLIE--ML 267
Query: 191 RDPNIIN--TGFDRPNLYLAASVKQ-------DDIMADLRKLTNFENQFEGSTIIYCPTK 241
P + + +RPNL+ + K D+I +R+ ++ N G I+YC ++
Sbjct: 268 HIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRE--SYSNNESG--IVYCFSR 323
Query: 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVR 301
CE++ L GI YHA + R+++H + K+ ++V+V T AFGMGI+KPDVR
Sbjct: 324 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 383
Query: 302 CVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK-NNMIFQPNLNDSEIQEHS 360
VIH+ K + YYQE GRAGRDGL S C F+++AD + ++M+F S +Q
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMVFYEY---SGLQN-- 438
Query: 361 KTMMKRVEKYLELRT-CRRKYLLNHFKGSSVTVAESQVPPDKCCDNCR-HNEMLELEQVP 418
+ + +Y + +T CRR HF E + CDNC +E+ E++ V
Sbjct: 439 ---LYDIVRYCQSKTKCRRSAFFRHF-------GEPSQDCNGMCDNCALSSEVKEVD-VS 487
Query: 419 RGGRMVVENSEVWMSTEARPGR 440
++VV S V T+A+ R
Sbjct: 488 DLSKLVV--SMV-QETQAKDQR 506
Score = 172 (65.6 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 33/70 (47%), Positives = 49/70 (70%)
Query: 64 QVVYMTPEYVTNNTSFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V+ + F+S++ R+ LI+IDEAHC SQWGHDFRP Y+ LS L+
Sbjct: 183 KILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQ 242
Query: 118 LPDVPILFLS 127
P VP++ L+
Sbjct: 243 FPKVPMVALT 252
>UNIPROTKB|F1NPI7 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
Length = 661
Score = 459 (166.6 bits), Expect = 1.9e-43, P = 1.9e-43
Identities = 108/288 (37%), Positives = 157/288 (54%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPN 194
IA+DE HC SQWGHDFRP Y+ L L+ P P++ +TATAT V+ D L ++
Sbjct: 216 IAVDEVHCCSQWGHDFRPDYKSLGILKRQFPCAPLIGLTATATNHVLKDAQNILHIQKCI 275
Query: 195 IINTGFDRPNLYLAASVK---QDDIMADLRKLTNFENQFEG-STIIYCPTKVICEKVCDV 250
F+RPNLY K +D + D+ KL N +++G S I+YC ++ E+V
Sbjct: 276 TFTASFNRPNLYYEVRHKPSNNEDFIEDIVKLIN--GRYKGLSGIVYCFSQKDSEQVTVS 333
Query: 251 LSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK 310
L + GI+ YHA++ K + ++H + + I+VVVAT AFGMGIDKPDVR VIH+ K
Sbjct: 334 LQKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVVATVAFGMGIDKPDVRFVIHHSMSK 393
Query: 311 DLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLNDSEIQEHSKTMMKRVEK 369
+ YYQE GRAGRD + C +Y D F ++M+ N+ ++ + M+ +
Sbjct: 394 SMENYYQESGRAGRDDQKADCILYYGFGDIFRISSMVVMENVGQEKLYD----MVSYCQN 449
Query: 370 YLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLELEQV 417
+ CRR + HF V ES ++ CDNC LE + +
Sbjct: 450 ---MNKCRRVLIARHFD----EVWES-ANCNRMCDNCCRENSLEKKDI 489
Score = 151 (58.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR------IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + F+S++ + + IA+DE HC SQWGHDFRP Y+ L L+
Sbjct: 185 KLLYVTPEKIAKSKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQ 244
Query: 118 LPDVPILFLS 127
P P++ L+
Sbjct: 245 FPCAPLIGLT 254
>WB|WBGene00001865 [details] [associations]
symbol:him-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0051307 "meiotic chromosome separation" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
"chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
Uniprot:O18017
Length = 988
Score = 466 (169.1 bits), Expect = 3.3e-43, P = 3.3e-43
Identities = 119/304 (39%), Positives = 158/304 (51%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL--PDVPILAVTATATPVVIDD 183
L R + IDEAHCVSQWGHDFRP Y LS LR P VPI+A+TATATP ++ D
Sbjct: 363 LHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTD 422
Query: 184 ICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTN----FENQFEG-STIIYC 238
L +++ + + F R NL K D I R L N + + G S I+YC
Sbjct: 423 ARDHLKMQNSKLFISSFVRDNL------KYDLIPKAARSLINVVEKMKQLYPGKSGIVYC 476
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
++ CE V +L++ G+ YHA ++ R + ++ + V+ AT AFGMGIDKP
Sbjct: 477 LSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFGMGIDKP 536
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK-NNMIFQPNLNDSEIQ 357
DVR VIHY PK + YYQE GRAGRDG+ S C Y D + MI + N
Sbjct: 537 DVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGNTTTGVRS 596
Query: 358 EHSKTMMKRVEKYLE-LRTCRRKYLLNHFKG--SSVTVAESQVPPDKCCDNCRHN-EMLE 413
H +++ V Y E + CRRK L+ HF + S+ P D C+ R N E +
Sbjct: 597 MHLNNVLQ-VVAYCENVSVCRRKMLVEHFGEVYDEQSCRNSKTPCD-ICERQRKNAEAIR 654
Query: 414 LEQV 417
L V
Sbjct: 655 LFDV 658
Score = 151 (58.2 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 39/85 (45%), Positives = 50/85 (58%)
Query: 64 QVVYMTPEYVT-----NNTSF-LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE ++ N+ F L R + IDEAHCVSQWGHDFRP Y LS LR
Sbjct: 341 KLLYVTPEKISASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREK 400
Query: 118 L--PDVPILFLSRI--PRIVLIAID 138
P VPI+ L+ P+IV A D
Sbjct: 401 YANPPVPIIALTATATPKIVTDARD 425
Score = 37 (18.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 365 KRVEKYLELRTCRRK 379
K + YL + TC RK
Sbjct: 763 KTAKVYLHIVTCERK 777
>UNIPROTKB|A0JN36 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
Length = 649
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 110/294 (37%), Positives = 159/294 (54%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R IA+DE HC SQWGHDFRP Y+ L L+ P+ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQ---DDIMADLRKLTNFENQFEG-S 233
V+ D L + F+RPNLY K +D + D+ KL N +++G S
Sbjct: 259 SHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLIN--GRYKGQS 316
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
IIYC ++ E+V L + GI YHA++ + + ++H + + I+VVVAT AFGM
Sbjct: 317 GIIYCFSQKDSEQVTISLQKLGIPAGAYHANMEPEDKTKVHRRWAANEIQVVVATVAFGM 376
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLN 352
GIDKPDVR VIH+ K + YYQE GRAGRD + + C +Y D F ++M+ N+
Sbjct: 377 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVG 436
Query: 353 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
++ E M+ + + CRR + HF V E+ +K CDNC
Sbjct: 437 QQKLYE----MVSYCQN---INKCRRVLIAQHF--DEVWSPEAC---NKMCDNC 478
Score = 154 (59.3 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 64 QVVYMTPEYVTNNTSFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + F+SR+ R IA+DE HC SQWGHDFRP Y+ L L+
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 118 LPDVPILFLS 127
P+ ++ L+
Sbjct: 245 FPNASLIGLT 254
>UNIPROTKB|P46063 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
Length = 649
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 111/305 (36%), Positives = 162/305 (53%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R IA+DE HC SQWGHDFRP Y+ L L+ P+ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQ---DDIMADLRKLTNFENQFEG-S 233
V+ D L + F+RPNLY K +D + D+ KL N +++G S
Sbjct: 259 NHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLIN--GRYKGQS 316
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
IIYC ++ E+V L GI YHA++ + + +H + + I+VVVAT AFGM
Sbjct: 317 GIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGM 376
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLN 352
GIDKPDVR VIH+ K + YYQE GRAGRD + + C +Y D F ++M+ N+
Sbjct: 377 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVG 436
Query: 353 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEML 412
++ E M+ + + CRR + HF V +E+ +K CDNC +
Sbjct: 437 QQKLYE----MVSYCQN---ISKCRRVLMAQHF--DEVWNSEAC---NKMCDNCCKDSAF 484
Query: 413 ELEQV 417
E + +
Sbjct: 485 ERKNI 489
Score = 154 (59.3 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 64 QVVYMTPEYVTNNTSFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + F+SR+ R IA+DE HC SQWGHDFRP Y+ L L+
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 118 LPDVPILFLS 127
P+ ++ L+
Sbjct: 245 FPNASLIGLT 254
>UNIPROTKB|F1NT69 [details] [associations]
symbol:F1NT69 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
ArrayExpress:F1NT69 Uniprot:F1NT69
Length = 451
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 106/298 (35%), Positives = 162/298 (54%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP- 193
+ IDEAHCVSQWGHDFRP Y L LR +P+ P +A+TATAT V DDI T+L L+ P
Sbjct: 159 LIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQDDIVTALKLKQPL 218
Query: 194 NIINTGFDRPNLYLAASVKQ--DDIMADLR-------KLTNFENQFEGSTIIYCPTKVIC 244
T R NL+ K+ D A+L+ ++ N + G I+YC + +C
Sbjct: 219 ATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCGIVYCRMRDVC 278
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
+++ LS G++ + YHA + R + ++++ I V+VAT +FGMG+DK +VR V
Sbjct: 279 DQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMGVDKANVRFVA 338
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSE-----IQEH 359
H+ K ++ YYQE GRAGRDG S C +Y D + + + + L+ + ++E
Sbjct: 339 HWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKIQEKKGTLKES 398
Query: 360 SKTMMKRVE---KYLELRTCRRKYLLNHFKGSSVTVAESQVPP-DKCCDNCRHNEMLE 413
K++M + + E CR + +F VT PP +KCCD C++ E ++
Sbjct: 399 DKSVMTAFDAIVSFCEELGCRHAAIAKYF--GDVT------PPCNKCCDYCKNPEAVK 448
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 64 QVVYMTPEYVTNNT---SFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+++Y+TPE ++ + S + R +L + IDEAHCVSQWGHDFRP Y L LR +
Sbjct: 129 KLLYITPEMAAASSFQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRI 188
Query: 119 PDVPILFLS 127
P+ P + L+
Sbjct: 189 PNTPCVALT 197
>UNIPROTKB|Q9DEY9 [details] [associations]
symbol:blm "Bloom syndrome protein homolog" species:8355
"Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
Length = 1364
Score = 467 (169.5 bits), Expect = 5.3e-43, P = 5.3e-43
Identities = 108/274 (39%), Positives = 142/274 (51%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFRP Y+ L+ LR VP++A+TATA P V DI L + P I
Sbjct: 746 IDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQLKMTKPQIF 805
Query: 197 NTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNG 255
F+R NL Y K + D + ++ S IIYC ++ C+ + D L + G
Sbjct: 806 TMSFNRDNLKYEVLPKKPKRVALDCVEWIK-KHHPNDSGIIYCLSRHECDTMADTLQKEG 864
Query: 256 IQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSA 314
+ YHA ++ R + H +D +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 865 LAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGMGIDKPDVRYVIHASLPKSVEG 924
Query: 315 YYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNL--NDSEIQEHSKTMMKRVEKYLE 372
YYQE GRAGRDG +S C FY D T+ + Q N Q H + V
Sbjct: 925 YYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEKDGNSHTKQTHFNNLYSMVHYCEN 984
Query: 373 LRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ CRR LL++F ++ + CDNC
Sbjct: 985 VVECRRMQLLSYFGENNFNPNFCKEHTQVACDNC 1018
Score = 153 (58.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V +T +S + + L+A IDEAHCVSQWGHDFRP Y+ L+ LR
Sbjct: 713 KLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQK 772
Query: 118 LPDVPILFLSRI--PRI 132
VP++ L+ PR+
Sbjct: 773 FQSVPMMALTATANPRV 789
>UNIPROTKB|F1PNP1 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
KEGG:cfa:486641 Uniprot:F1PNP1
Length = 646
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 113/314 (35%), Positives = 168/314 (53%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R IA+DE HC S WGHDFRP Y+ L L+ P+ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQFPNTALMGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQ---DDIMADLRKLTNFENQFEG-S 233
V+ D L + F+RPNLY K +D++ D+ KL N +++G S
Sbjct: 259 SHVLKDAQKILCVGKCFTFTASFNRPNLYYEIRQKPSNTEDVIEDIVKLIN--GRYKGQS 316
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
IIYC ++ E+V L + GIQ YHA++ + + +H + + I+VVVAT AFGM
Sbjct: 317 GIIYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPEDKTRVHRRWSANEIQVVVATVAFGM 376
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLN 352
GIDKPDVR +IH+ K + YYQE GRAGRD + + C +Y D F ++M+ N+
Sbjct: 377 GIDKPDVRFIIHHSMSKSIENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENVG 436
Query: 353 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEML 412
++ E M+ + + CRR + HF V AE+ ++ CDNC +
Sbjct: 437 QQKLYE----MVSYCQN---ISKCRRVLIAQHF--DEVWNAEAC---NRMCDNCCKDISC 484
Query: 413 ELEQVPRGGRMVVE 426
E + V R +V+
Sbjct: 485 ERKNVTAHCRDLVK 498
Score = 149 (57.5 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 64 QVVYMTPEYVTNNTSFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + F+SR+ R IA+DE HC S WGHDFRP Y+ L L+
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQ 244
Query: 118 LPDVPILFLS 127
P+ ++ L+
Sbjct: 245 FPNTALMGLT 254
>RGD|1311071 [details] [associations]
symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015630 "microtubule cytoskeleton"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 106/303 (34%), Positives = 163/303 (53%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R+ +A+DE HC SQWGHDFRP Y+ L L+ P++ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFEN-QFEG-STI 235
V+ D L + F+RPNLY K + + N N +++G S I
Sbjct: 259 NHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGI 318
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
IYC ++ E+V L + G++ YHA++ + R ++H + + ++VVVAT AFGMGI
Sbjct: 319 IYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGI 378
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLNDS 354
DKPDVR VIH+ K + YYQE GRAGRD + C +Y D F ++M+ N+
Sbjct: 379 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQQ 438
Query: 355 EIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLEL 414
++ E M+ + + CRR + HF V A++ +K CDNC ++ E
Sbjct: 439 KLYE----MVSYCQN---ISKCRRALIAQHF--DEVWNADAC---NKMCDNCCKDDSFEK 486
Query: 415 EQV 417
+ +
Sbjct: 487 KNI 489
Score = 156 (60.0 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 64 QVVYMTPEYVTNNTSFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + F+SR+ R+ +A+DE HC SQWGHDFRP Y+ L L+
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 118 LPDVPILFLS 127
P++ ++ L+
Sbjct: 245 FPNISLIGLT 254
>UNIPROTKB|Q6AYJ1 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 106/303 (34%), Positives = 163/303 (53%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R+ +A+DE HC SQWGHDFRP Y+ L L+ P++ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFEN-QFEG-STI 235
V+ D L + F+RPNLY K + + N N +++G S I
Sbjct: 259 NHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGI 318
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
IYC ++ E+V L + G++ YHA++ + R ++H + + ++VVVAT AFGMGI
Sbjct: 319 IYCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGI 378
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLNDS 354
DKPDVR VIH+ K + YYQE GRAGRD + C +Y D F ++M+ N+
Sbjct: 379 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENVGQQ 438
Query: 355 EIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEMLEL 414
++ E M+ + + CRR + HF V A++ +K CDNC ++ E
Sbjct: 439 KLYE----MVSYCQN---ISKCRRALIAQHF--DEVWNADAC---NKMCDNCCKDDSFEK 486
Query: 415 EQV 417
+ +
Sbjct: 487 KNI 489
Score = 156 (60.0 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 64 QVVYMTPEYVTNNTSFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + F+SR+ R+ +A+DE HC SQWGHDFRP Y+ L L+
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 118 LPDVPILFLS 127
P++ ++ L+
Sbjct: 245 FPNISLIGLT 254
>UNIPROTKB|F1SR01 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
Uniprot:F1SR01
Length = 649
Score = 451 (163.8 bits), Expect = 1.3e-42, P = 1.3e-42
Identities = 112/305 (36%), Positives = 160/305 (52%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R IAIDE HC SQWGHDFRP Y+ L L+ P+ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEARRFTRIAIDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLIGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQ---DDIMADLRKLTNFENQFEG-S 233
V+ D L + F+RPNLY K +D + D+ KL N +++G S
Sbjct: 259 SHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLIN--GRYKGQS 316
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
IIYC ++ E+V L + GI YHA++ + + +H + + I+VVVAT AFGM
Sbjct: 317 GIIYCFSQKDSEQVTVSLQKLGIHAGAYHANMEPEDKTTVHRRWSANEIQVVVATVAFGM 376
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLN 352
GIDKPDVR VIH+ K + YYQE GRAGRD + C +Y D F ++M+ N+
Sbjct: 377 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDTKADCILYYGFGDIFRISSMVVMENVG 436
Query: 353 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEML 412
++ E M+ + + CRR + HF V E +K CDNC +
Sbjct: 437 QQKLYE----MVSYCQN---ISKCRRVLIAQHF--DEVWSPEEC---NKMCDNCCKDTSF 484
Query: 413 ELEQV 417
E + +
Sbjct: 485 ERKNI 489
Score = 155 (59.6 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 64 QVVYMTPEYVTNNTSFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + F+SR+ R IAIDE HC SQWGHDFRP Y+ L L+
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAIDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 118 LPDVPILFLS 127
P+ ++ L+
Sbjct: 245 FPNTSLIGLT 254
>UNIPROTKB|F1NWK5 [details] [associations]
symbol:F1NWK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
Length = 1023
Score = 458 (166.3 bits), Expect = 2.6e-42, P = 2.6e-42
Identities = 109/306 (35%), Positives = 166/306 (54%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP- 193
+ IDEAHCVSQWGHDFRP Y L LR +P+ P +A+TATAT V DDI T+L L+ P
Sbjct: 159 LIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQDDIVTALKLKQPL 218
Query: 194 NIINTGFDRPNLYLAASVKQ--DDIMADLR-------KLTNFENQFEGSTIIYCPTKVIC 244
T R NL+ K+ D A+L+ ++ N + G I+YC + +C
Sbjct: 219 ATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCGIVYCRMRDVC 278
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
+++ LS G++ + YHA + R + ++++ I V+VAT +FGMG+DK +VR V
Sbjct: 279 DQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMGVDKANVRFVA 338
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSE-----IQEH 359
H+ K ++ YYQE GRAGRDG S C +Y D + + + + L+ + ++E
Sbjct: 339 HWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKIQEKKGTLKES 398
Query: 360 SKTMMKRVE---KYLELRTCRRKYLLNHFKGSSVTVAESQVPP-DKCCDNCRHNEML--E 413
K++M + + E CR + +F VT PP +KCCD C++ E + +
Sbjct: 399 DKSVMTAFDAIVSFCEELGCRHAAIAKYF--GDVT------PPCNKCCDYCKNPEAVKRQ 450
Query: 414 LEQVPR 419
LE + R
Sbjct: 451 LEALER 456
Score = 142 (55.0 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 64 QVVYMTPEYVTNNT---SFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+++Y+TPE ++ + S + R +L + IDEAHCVSQWGHDFRP Y L LR +
Sbjct: 129 KLLYITPEMAAASSFQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRI 188
Query: 119 PDVPILFLS 127
P+ P + L+
Sbjct: 189 PNTPCVALT 197
>FB|FBgn0002906 [details] [associations]
symbol:Blm "Bloom syndrome helicase ortholog" species:7227
"Drosophila melanogaster" [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:1901291 "negative
regulation of double-strand break repair via single-strand
annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
Uniprot:Q9VGI8
Length = 1487
Score = 455 (165.2 bits), Expect = 1.2e-41, P = 1.2e-41
Identities = 106/277 (38%), Positives = 153/277 (55%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFRP Y+ L L+ P+VP +A+TATATP V DI L L++
Sbjct: 864 IDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNLKNCKWF 923
Query: 197 NTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQ-FEGSTIIYCPTKVICEKVCDVLSRN 254
+ F+R NL Y K + D+ + + Q F G IIYC ++ C++ + ++
Sbjct: 924 LSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKPQHFSG--IIYCLSRKECDETSKKMCKD 981
Query: 255 GIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSA 314
G++ YHA ++ R+ ++ ++V+ AT AFGMGIDKPDVR V+HY PK +
Sbjct: 982 GVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEG 1041
Query: 315 YYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTM----MKRVEKY 370
YYQE GRAGRDG + C +Y +D + + +D +Q + K + + R+ Y
Sbjct: 1042 YYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLD---SDKALQYNVKKIHVDNLYRIVGY 1098
Query: 371 LE-LRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
E L CRR L++F G T + + CDNC
Sbjct: 1099 CENLTDCRRAQQLDYF-GEHFTSEQCLENRETACDNC 1134
Score = 150 (57.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR------IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE ++++ F + I IDEAHCVSQWGHDFRP Y+ L L+
Sbjct: 831 KLLYVTPEKISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKR 890
Query: 118 LPDVPILFLSRI--PRI---VLIAIDEAHCVSQW 146
P+VP + L+ PR+ +L ++ +C +W
Sbjct: 891 FPNVPTIALTATATPRVRLDILAQLNLKNC--KW 922
>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 302 (111.4 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 67/176 (38%), Positives = 98/176 (55%)
Query: 233 STIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG 292
ST+IY +K CE V L G+ YHA ++ Q+KE H F+KD I+++VAT AFG
Sbjct: 286 STLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFG 345
Query: 293 MGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK-NNMIFQPNL 351
MGIDKPD+R +IHYG + L AY Q++GRAGRD + F+ D +K N+I + N
Sbjct: 346 MGIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILRENT 405
Query: 352 NDSEIQ------EHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDK 401
++ I+ EH + + Y CRRK + +F + +T + + DK
Sbjct: 406 ANNLIETNFQRVEHIVHIFTQASDYAYSTACRRKKIYEYFDEAPLTSYDIDIFNDK 461
Score = 214 (80.4 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 52/116 (44%), Positives = 72/116 (62%)
Query: 110 CLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPI 169
C E L DV IL +RI +LIAIDE HC+S+WGHDFRPSYR L+ELR+ L ++PI
Sbjct: 149 CSPEYALNNKDVFILLKNRI---LLIAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPI 205
Query: 170 LAVTATATPVVIDDICTSLM--LRDPNIINTGFDRPNLYLAASVKQDDIMADLRKL 223
+ +TAT T V DI +L L++ I + ++ NL+ + K D I DL+ +
Sbjct: 206 MCLTATCTKNVQSDILKNLNFDLQNCLIKRSSVNKKNLFYSVREKTD-IYHDLKDI 260
Score = 206 (77.6 bits), Expect = 9.6e-41, Sum P(2) = 9.6e-41
Identities = 43/95 (45%), Positives = 63/95 (66%)
Query: 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTS-FLSRIPRIVLIAID 92
RK + + F GS M +++ ++ ++VY +PEY NN F+ RI+LIAID
Sbjct: 116 RKRISSVFLGSGQKMNNNKIL-NEIKHGIYKIVYCSPEYALNNKDVFILLKNRILLIAID 174
Query: 93 EAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLS 127
E HC+S+WGHDFRPSYR L+ELR+ L ++PI+ L+
Sbjct: 175 EVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCLT 209
Score = 46 (21.3 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 326 GLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTM-MKRVEKYL 371
G+ C D N I+ PN N+S I ++KT +K E +
Sbjct: 965 GIRGFCLLHDLKTDILNLN-IYNPNHNNSPIPINAKTSTLKNFENLI 1010
Score = 44 (20.5 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 323 GRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSK 361
G+ GLS+VC K+ K + I + N ++ I+E+ K
Sbjct: 586 GKTGLSTVCKILVKS----KESSIIKKNYHN--IKEYGK 618
Score = 38 (18.4 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDL 281
D+ + + + +H +KQ++E H ++D+
Sbjct: 742 DIYNVDDYKYDDHHISSKIKQQQEQHNNNIRDI 774
>UNIPROTKB|Q8ILG5 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 302 (111.4 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 67/176 (38%), Positives = 98/176 (55%)
Query: 233 STIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG 292
ST+IY +K CE V L G+ YHA ++ Q+KE H F+KD I+++VAT AFG
Sbjct: 286 STLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVATVAFG 345
Query: 293 MGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK-NNMIFQPNL 351
MGIDKPD+R +IHYG + L AY Q++GRAGRD + F+ D +K N+I + N
Sbjct: 346 MGIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHINDESKIKNIILRENT 405
Query: 352 NDSEIQ------EHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDK 401
++ I+ EH + + Y CRRK + +F + +T + + DK
Sbjct: 406 ANNLIETNFQRVEHIVHIFTQASDYAYSTACRRKKIYEYFDEAPLTSYDIDIFNDK 461
Score = 214 (80.4 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 52/116 (44%), Positives = 72/116 (62%)
Query: 110 CLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPI 169
C E L DV IL +RI +LIAIDE HC+S+WGHDFRPSYR L+ELR+ L ++PI
Sbjct: 149 CSPEYALNNKDVFILLKNRI---LLIAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPI 205
Query: 170 LAVTATATPVVIDDICTSLM--LRDPNIINTGFDRPNLYLAASVKQDDIMADLRKL 223
+ +TAT T V DI +L L++ I + ++ NL+ + K D I DL+ +
Sbjct: 206 MCLTATCTKNVQSDILKNLNFDLQNCLIKRSSVNKKNLFYSVREKTD-IYHDLKDI 260
Score = 206 (77.6 bits), Expect = 9.6e-41, Sum P(2) = 9.6e-41
Identities = 43/95 (45%), Positives = 63/95 (66%)
Query: 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTS-FLSRIPRIVLIAID 92
RK + + F GS M +++ ++ ++VY +PEY NN F+ RI+LIAID
Sbjct: 116 RKRISSVFLGSGQKMNNNKIL-NEIKHGIYKIVYCSPEYALNNKDVFILLKNRILLIAID 174
Query: 93 EAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLS 127
E HC+S+WGHDFRPSYR L+ELR+ L ++PI+ L+
Sbjct: 175 EVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCLT 209
Score = 46 (21.3 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 326 GLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTM-MKRVEKYL 371
G+ C D N I+ PN N+S I ++KT +K E +
Sbjct: 965 GIRGFCLLHDLKTDILNLN-IYNPNHNNSPIPINAKTSTLKNFENLI 1010
Score = 44 (20.5 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 323 GRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSK 361
G+ GLS+VC K+ K + I + N ++ I+E+ K
Sbjct: 586 GKTGLSTVCKILVKS----KESSIIKKNYHN--IKEYGK 618
Score = 38 (18.4 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 249 DVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDL 281
D+ + + + +H +KQ++E H ++D+
Sbjct: 742 DIYNVDDYKYDDHHISSKIKQQQEQHNNNIRDI 774
>MGI|MGI:103021 [details] [associations]
symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
Length = 648
Score = 442 (160.7 bits), Expect = 1.5e-41, P = 1.5e-41
Identities = 110/314 (35%), Positives = 168/314 (53%)
Query: 124 LFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
+F+SR+ R+ A+DE HC SQWGHDFRP Y+ L L+ P+ ++ +TATAT
Sbjct: 199 MFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATAT 258
Query: 178 PVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQ---DDIMADLRKLTNFENQFEG-S 233
V+ D+ L + F+RPNL+ K +D D+ KL N +++G S
Sbjct: 259 NHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLIN--GRYKGQS 316
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
IIYC ++ E++ L + GI YHA++ + + ++H + + ++VVVAT AFGM
Sbjct: 317 GIIYCFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVAFGM 376
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLN 352
GIDKPDVR VIH+ K + YYQE GRAGRD + C +Y D F ++M+ N+
Sbjct: 377 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRISSMVVMENVG 436
Query: 353 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRHNEML 412
++ E + + V K CRR + HF V A++ +K CDNC +
Sbjct: 437 QQKLYE-MVSYCQNVSK------CRRVLIAQHF--DEVWNADAC---NKMCDNCCKDVSF 484
Query: 413 ELEQVPRGGRMVVE 426
E + V + R +++
Sbjct: 485 EKKNVTQHCRDLIK 498
Score = 151 (58.2 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 64 QVVYMTPEYVTNNTSFLSRIP------RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + F+SR+ R+ A+DE HC SQWGHDFRP Y+ L L+
Sbjct: 185 KLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQ 244
Query: 118 LPDVPILFLSRIP-RIVLIAIDEAHCVSQ 145
P+ ++ L+ VL + + CV +
Sbjct: 245 FPNASLMGLTATATNHVLKDVQKILCVGK 273
>WB|WBGene00004322 [details] [associations]
symbol:rcq-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
Length = 809
Score = 445 (161.7 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 118/328 (35%), Positives = 170/328 (51%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPN 194
I +DEAHCV+QWGHDFRP Y L LR P VP +A+TATA DDI L LR+P
Sbjct: 303 IVVDEAHCVTQWGHDFRPDYLTLGSLRDVCPGVPWVALTATANAKAQDDIAFQLKLRNPE 362
Query: 195 IINTGFDRPNLY----LAASVKQD---DIMADLRKLTNFE------NQ--FEGSTIIYCP 239
+G R NL+ +A+ + + D LT E N+ F GS I+YC
Sbjct: 363 SFKSGTYRDNLFYDNHMASFITKCLTVDAKTSSSNLTKHEKAERSQNKKTFTGSAIVYCR 422
Query: 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
++ C +V +L GI YHA + K R E+ ++ + I VV AT AFGMGIDKPD
Sbjct: 423 SRNECGQVAKMLEIAGIPAMAYHAGLGKKDRNEVQEKWMNNEIPVVAATVAFGMGIDKPD 482
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEH 359
VR VIH+ ++L+ YYQE GRAGRDG S C +Y D KN + F + ++++E
Sbjct: 483 VRAVIHWSPSQNLAGYYQEAGRAGRDGKRSYCRIYYSKQD--KNALNFLVSGELAKLREK 540
Query: 360 SKTMMKRVEKY-LELRTCRRKY--LLNHFKGSSVT-VAESQVPPDKCCDNCRHNEMLELE 415
+K EK +++++ + +L + + + V+ + D C C+ N
Sbjct: 541 AKKNNAEGEKAEMQIKSIQTGLAKMLEYCESARCRHVSIASFFDDTECRPCKTNC----- 595
Query: 416 QVPRGGRMVVENSEVWMSTEARPGREAF 443
R + N E ++++EA GR F
Sbjct: 596 DYCRDPTKTIRNVEAFINSEASTGRSMF 623
Score = 135 (52.6 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 33/69 (47%), Positives = 44/69 (63%)
Query: 64 QVVYMTPEYV-TNNTS-FLSRIP-RIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+++Y+T E V T+ T L+ + R VL I +DEAHCV+QWGHDFRP Y L LR
Sbjct: 273 RMLYLTAEGVATDGTKKLLNGLANRDVLRYIVVDEAHCVTQWGHDFRPDYLTLGSLRDVC 332
Query: 119 PDVPILFLS 127
P VP + L+
Sbjct: 333 PGVPWVALT 341
>RGD|1308810 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
"bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
[GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0009378 "four-way junction helicase activity"
evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
[GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
"annealing helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0045950 "negative regulation of mitotic
recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
differentiation" evidence=ISO] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
"regulation of binding" evidence=ISO] [GO:0051259 "protein
oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=ISO] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
Length = 999
Score = 446 (162.1 bits), Expect = 4.8e-41, P = 4.8e-41
Identities = 94/208 (45%), Positives = 122/208 (58%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFR Y+ ++ LR P VP++A+TATA P V DI T L + P +
Sbjct: 785 IDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVMALTATANPRVQKDILTQLKILRPQVF 844
Query: 197 NTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNG 255
+ F+R NL Y K + D + + ++ S IIYC ++ C+ + D L R G
Sbjct: 845 SMSFNRHNLKYYVLPKKPKKVALDCLEWIRKHHPYD-SGIIYCLSRKECDTMADTLQREG 903
Query: 256 IQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSA 314
+ YHA +S R E+ H +D +V+ AT AFGMGIDKPDVR V+H PK +
Sbjct: 904 LAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVVHASLPKSVEG 963
Query: 315 YYQEIGRAGRDGLSSVCYTFYKTADFTK 342
YYQE GRAGRDG S C FY D T+
Sbjct: 964 YYQESGRAGRDGEISHCVLFYTYHDVTR 991
Score = 148 (57.2 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + +S + + L+A IDEAHCVSQWGHDFR Y+ ++ LR
Sbjct: 752 KLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQR 811
Query: 118 LPDVPILFLSRI--PRI 132
P VP++ L+ PR+
Sbjct: 812 FPSVPVMALTATANPRV 828
>UNIPROTKB|F1ND40 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
ArrayExpress:F1ND40 Uniprot:F1ND40
Length = 1142
Score = 446 (162.1 bits), Expect = 6.5e-41, P = 6.5e-41
Identities = 105/275 (38%), Positives = 143/275 (52%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFR Y+ L+ LR VP++A+TATA P V DI L + P +
Sbjct: 524 IDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVF 583
Query: 197 NTGFDRPNL-YLAASVKQDDIMAD-LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254
F+R NL Y K + D L + + G IIYC ++ C+ +L +
Sbjct: 584 TMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSG--IIYCLSRHECDTTAAILQKE 641
Query: 255 GIQNRPYHAHISLKQRKEIHGLFV-KDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLS 313
G+ YHA ++ R + +V ++ +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 642 GLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIE 701
Query: 314 AYYQEIGRAGRDGLSSVCYTFYKTADFTKNN--MIFQPNLNDSEIQEHSKTMMKRVEKYL 371
YYQE GRAGRDG S C FY +D T+ ++ + + N Q H + V
Sbjct: 702 GYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTHFNNLYSMVHYCE 761
Query: 372 ELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ CRR LL +F + + P+ CDNC
Sbjct: 762 NVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDNC 796
Score = 142 (55.0 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + LS + + L+A IDEAHCVSQWGHDFR Y+ L+ LR
Sbjct: 491 KLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKK 550
Query: 118 LPDVPILFLSRI--PRI 132
VP++ L+ PR+
Sbjct: 551 FHSVPMMALTATANPRV 567
>UNIPROTKB|F1P3V1 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
"regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0051259 "protein
oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
Length = 1380
Score = 446 (162.1 bits), Expect = 9.4e-41, P = 9.4e-41
Identities = 105/275 (38%), Positives = 143/275 (52%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFR Y+ L+ LR VP++A+TATA P V DI L + P +
Sbjct: 762 IDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVF 821
Query: 197 NTGFDRPNL-YLAASVKQDDIMAD-LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254
F+R NL Y K + D L + + G IIYC ++ C+ +L +
Sbjct: 822 TMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSG--IIYCLSRHECDTTAAILQKE 879
Query: 255 GIQNRPYHAHISLKQRKEIHGLFV-KDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLS 313
G+ YHA ++ R + +V ++ +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 880 GLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIE 939
Query: 314 AYYQEIGRAGRDGLSSVCYTFYKTADFTKNN--MIFQPNLNDSEIQEHSKTMMKRVEKYL 371
YYQE GRAGRDG S C FY +D T+ ++ + + N Q H + V
Sbjct: 940 GYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTHFNNLYSMVHYCE 999
Query: 372 ELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ CRR LL +F + + P+ CDNC
Sbjct: 1000 NVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDNC 1034
Score = 142 (55.0 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + LS + + L+A IDEAHCVSQWGHDFR Y+ L+ LR
Sbjct: 729 KLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKK 788
Query: 118 LPDVPILFLSRI--PRI 132
VP++ L+ PR+
Sbjct: 789 FHSVPMMALTATANPRV 805
>TIGR_CMR|SPO_0107 [details] [associations]
symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
Length = 679
Score = 436 (158.5 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 105/268 (39%), Positives = 140/268 (52%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
L RI + LIA+DEAHCVSQWGHDFRP Y + ELR L VP+ A TATA +I
Sbjct: 126 LRRIG-VSLIAVDEAHCVSQWGHDFRPDYLRIGELRRAL-GVPLAAFTATADAETQAEIV 183
Query: 186 TSLML-RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEG-STIIYCPTKVI 243
L +P GFDRPN++LA + K + R++ +F G S I+YC T+
Sbjct: 184 AKLFDGEEPRSFLRGFDRPNIHLAFAAKD----SPRRQILDFAGARRGQSGIVYCGTRAK 239
Query: 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCV 303
E + L +G YH + + R+ + F ++ +VVAT AFGMGIDKPD+R V
Sbjct: 240 TETLAQALREDGHSACHYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMGIDKPDIRWV 299
Query: 304 IHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTM 363
H PK + AYYQEIGRAGRDG + T + D L E +
Sbjct: 300 AHADLPKSIEAYYQEIGRAGRDGGPAETLTLFGPDDIRLRRSQIDEGLAPPERRAADHAR 359
Query: 364 MKRVEKYLELRTCRRKYLLNHFKGSSVT 391
+ + E TCRR+ LL +F + +T
Sbjct: 360 LNALLGLAEAMTCRRQTLLGYFGETEIT 387
Score = 150 (57.9 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 32/62 (51%), Positives = 42/62 (67%)
Query: 64 QVVYMTPEYVTNNTSF--LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV 121
+++YM PE + + + L RI + LIA+DEAHCVSQWGHDFRP Y + ELR L V
Sbjct: 108 KLLYMAPERLASGAAMGMLRRIG-VSLIAVDEAHCVSQWGHDFRPDYLRIGELRRAL-GV 165
Query: 122 PI 123
P+
Sbjct: 166 PL 167
>ZFIN|ZDB-GENE-050809-134 [details] [associations]
symbol:recql "RecQ protein-like (DNA helicase
Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
Uniprot:F1Q4T3
Length = 640
Score = 431 (156.8 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 108/308 (35%), Positives = 162/308 (52%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPN 194
IA+DE HC SQWGHDFRP Y+ L L+ P+VP++ +TATAT V+ D L +++P
Sbjct: 222 IAVDEVHCCSQWGHDFRPDYKLLGILKRQFPNVPLIGLTATATSNVLKDCQKILCVQEPV 281
Query: 195 IINTGFDRPNLYLAASVKQDDIMAD-LRKLTN--FENQFEGSTIIYCPTKVICEKVCDVL 251
+ F+RPNLY K ++ D + L ++NQ S I+Y ++ E V L
Sbjct: 282 TLTAPFNRPNLYYEVRFKDNEDCTDQIASLIRGRYKNQ---SGIVYVFSQKDAEVVATEL 338
Query: 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD 311
+ I +PYHA++ + +H + I+VVVAT AFGMGIDK DVR VIH+ K
Sbjct: 339 QKRDIVAQPYHANMEPSHKSLVHQRWSSKKIQVVVATVAFGMGIDKADVRFVIHHTISKS 398
Query: 312 LSAYYQEIGRAGRDGLSSVCYTFYKTAD-FTKNNMIFQPNLNDSEIQEHSKTMMKRVEKY 370
+ YYQE GRAGRD + C F+ D F + M+ N ++ + + V++
Sbjct: 399 IENYYQESGRAGRDDSPADCIVFFGFMDIFRISTMVVMENTGQQKLH-NMVAYCQNVDR- 456
Query: 371 LELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH-NEMLELEQVPRGGRMVVENSE 429
CRR + HF V E ++ CD CRH N+ + ++ + + R V+ E
Sbjct: 457 -----CRRAMMAIHF--DEVWNDEEC---NEMCDVCRHGNDYITMD-ITQHARDVLHIVE 505
Query: 430 VWMSTEAR 437
+ S + +
Sbjct: 506 LASSMDEK 513
Score = 152 (58.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPR------IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + + +S++ + + IA+DE HC SQWGHDFRP Y+ L L+
Sbjct: 191 KLLYVTPEKIAKSKLLMSKLEKAFNMGLLARIAVDEVHCCSQWGHDFRPDYKLLGILKRQ 250
Query: 118 LPDVPILFLS 127
P+VP++ L+
Sbjct: 251 FPNVPLIGLT 260
>UNIPROTKB|Q9I920 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
Length = 1142
Score = 440 (159.9 bits), Expect = 2.9e-40, P = 2.9e-40
Identities = 104/275 (37%), Positives = 142/275 (51%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNII 196
IDEAHCVSQWGHDFR Y+ L+ LR VP++A+TATA P V DI L + P +
Sbjct: 524 IDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVF 583
Query: 197 NTGFDRPNL-YLAASVKQDDIMAD-LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRN 254
F+R NL Y K + D L + + G IIYC ++ C+ +L +
Sbjct: 584 TMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSG--IIYCLSRHECDTTAAILQKE 641
Query: 255 GIQNRPYHAHISLKQRKEIHGLFV-KDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLS 313
G+ YHA ++ R + +V ++ +V+ AT AFGMGIDKPDVR VIH PK +
Sbjct: 642 GLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVE 701
Query: 314 AYYQEIGRAGRDGLSSVCYTFYKTADFTKNN--MIFQPNLNDSEIQEHSKTMMKRVEKYL 371
YY E GRAGRDG S C FY +D T+ ++ + + N Q H + V
Sbjct: 702 GYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTHFNNLYSMVHYCE 761
Query: 372 ELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
+ CRR LL +F + + P+ CDNC
Sbjct: 762 NVVDCRRIQLLAYFGETDFNPNFCKDHPEVICDNC 796
Score = 142 (55.0 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + LS + + L+A IDEAHCVSQWGHDFR Y+ L+ LR
Sbjct: 491 KLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKK 550
Query: 118 LPDVPILFLSRI--PRI 132
VP++ L+ PR+
Sbjct: 551 FHSVPMMALTATANPRV 567
>FB|FBgn0027375 [details] [associations]
symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IDA] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
mitotic anaphase" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
Uniprot:Q9U5E0
Length = 1058
Score = 414 (150.8 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 107/298 (35%), Positives = 154/298 (51%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
++ A+DEAHCVSQWGHDFRP Y L ELR DV LA+TATA+ V +DI L L
Sbjct: 142 KLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATASREVKEDIYKQLRL 201
Query: 191 RDPNI-INTGFDRPNLYLAASVK---QDDI--MADL-RKLTNFENQFE-------GSTII 236
P +T R NL+ K +DD +AD R +F+ G I+
Sbjct: 202 HQPVAQFSTPSFRKNLFYDIVYKNSIEDDFQHLADFARHCLGNPKEFKDTPKPQRGCGIV 261
Query: 237 YCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGID 296
YC T+ E++ +++ GI YHA + +R E+ +++ ++ AT +FGMG+D
Sbjct: 262 YCRTRDQVERMAIGVTKQGIGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSFGMGVD 321
Query: 297 KPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLN---- 352
KP VR VIH+ P++++AYYQE GRAGRDGL S C +Y D + Q + +
Sbjct: 322 KPSVRFVIHWDVPQNVAAYYQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQNDAHRARG 381
Query: 353 --DSEI-QEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCR 407
D E+ E + +++ ++ E TCR K L + F G Q CD C+
Sbjct: 382 RGDKELLTERAIKQFEKITEFCERTTCRHK-LFSDFFGDPTPDCSGQ------CDVCK 432
Score = 135 (52.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 30/67 (44%), Positives = 37/67 (55%)
Query: 66 VYMTPEYVTNN-----TSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 120
+Y+TPE L + ++ A+DEAHCVSQWGHDFRP Y L ELR D
Sbjct: 118 LYITPEQAATKFFQDLLQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSD 177
Query: 121 VPILFLS 127
V L L+
Sbjct: 178 VIWLALT 184
>UNIPROTKB|E1BKM5 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
Length = 987
Score = 412 (150.1 bits), Expect = 2.1e-37, P = 2.1e-37
Identities = 89/233 (38%), Positives = 131/233 (56%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP- 193
+ +DEAHCVSQWGHDFRP Y L LR L D P +A+TATATP V +D+ +L L+ P
Sbjct: 153 LVVDEAHCVSQWGHDFRPDYLRLGALRSRLADAPCVALTATATPQVREDVFAALHLKQPV 212
Query: 194 NIINTGFDRPNLYLAASVKQ--DDIMADLRKLT------NFENQFEGSTIIYCPTKVICE 245
T R NL+ K+ D +LR + G IIYC T+ CE
Sbjct: 213 ATFKTPCFRANLFYDVQFKELLPDPYGNLRDFCLKALGQKADKGLSGCGIIYCRTREACE 272
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
++ LS G+ + YHA + +R + ++++ + V+VAT +FGMG+DK +VR V H
Sbjct: 273 QLATELSYRGVNAKAYHAGLKAPERTLVQNEWMEEKVPVIVATISFGMGVDKANVRFVAH 332
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQE 358
+ K ++ YYQE GRAGRDG S C +Y +D + + + + + +++QE
Sbjct: 333 WNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRSDRDQVSFLIRKEV--AKLQE 383
Score = 145 (56.1 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 64 QVVYMTPEYVTNNTSFL----SRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE + TSF S + R +L + +DEAHCVSQWGHDFRP Y L LR
Sbjct: 123 KLLYITPEMAAS-TSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSR 181
Query: 118 LPDVPILFLS 127
L D P + L+
Sbjct: 182 LADAPCVALT 191
>UNIPROTKB|J3KTQ2 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
Ensembl:ENST00000578201 Uniprot:J3KTQ2
Length = 480
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 97/290 (33%), Positives = 150/290 (51%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP- 193
+ +DEAHCVSQWGHDFRP Y L LR L P +A+TATATP V +D+ +L L+ P
Sbjct: 154 LVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPV 213
Query: 194 NIINTGFDRPNLYLAASVKQ--DDIMADLRKLT------NFENQFEGSTIIYCPTKVICE 245
I T R NL+ K+ D +L+ + G I+YC T+ CE
Sbjct: 214 AIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACE 273
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
++ LS G+ + YHA + +R + ++++ + V+VAT +FGMG+DK +VR V H
Sbjct: 274 QLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAH 333
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSK---- 361
+ K ++ YYQE GRAGRDG S C +Y D + + + + + + + +K
Sbjct: 334 WNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKASDK 393
Query: 362 -TMMK--RVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH 408
T+M + + E CR + +F G ++ K CD+C++
Sbjct: 394 ATIMAFDALVTFCEELGCRHAAIAKYF-GDALPACA------KGCDHCQN 436
Score = 137 (53.3 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 64 QVVYMTPEYVTNNT---SFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+++Y+TPE +++ + S + R +L + +DEAHCVSQWGHDFRP Y L LR L
Sbjct: 124 KILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 183
Query: 119 PDVPILFLS 127
P + L+
Sbjct: 184 GHAPCVALT 192
>RGD|1310823 [details] [associations]
symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
Length = 973
Score = 411 (149.7 bits), Expect = 2.6e-37, P = 2.6e-37
Identities = 89/234 (38%), Positives = 132/234 (56%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPN 194
+ +DEAHCVSQWGHDFRP Y L LR L P +A+TATATP V +D+ +L L+ P
Sbjct: 154 LVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVALTATATPQVQEDVFAALHLKQPV 213
Query: 195 I-INTGFDRPNLYLAASVKQ--DDIMADLRKLT------NFEN-QFEGSTIIYCPTKVIC 244
T R NL+ K+ D+ +LR +N G I+YC T+ C
Sbjct: 214 ASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLKALGQKADNGSSSGCGIVYCRTREAC 273
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
E++ LS G+ + YHA + +R ++ ++++ + V+VAT +FGMG+DK +VR V
Sbjct: 274 EQLAIELSSRGVNAKAYHAGLKASERTQVQNEWMEEKVPVIVATISFGMGVDKANVRFVA 333
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQE 358
H+ K ++ YYQE GRAGRDG S C +Y D + + + + L +++QE
Sbjct: 334 HWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEL--AKLQE 385
Score = 132 (51.5 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 64 QVVYMTPEYVTNNT---SFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+++Y+TPE + + + S + R +L + +DEAHCVSQWGHDFRP Y L LR L
Sbjct: 124 KLLYITPEMAASASFQPTLNSLLSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 183
Query: 119 PDVPILFLS 127
P + L+
Sbjct: 184 AHAPCVALT 192
>UNIPROTKB|F1PAG8 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
Uniprot:F1PAG8
Length = 989
Score = 395 (144.1 bits), Expect = 9.0e-37, Sum P(2) = 9.0e-37
Identities = 96/286 (33%), Positives = 145/286 (50%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP- 193
+ +DEAHCVSQWGHDFRP Y L LR L P +A+TATAT V +D+ +L L+ P
Sbjct: 150 LVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPCIALTATATLQVQEDVFAALHLKQPV 209
Query: 194 NIINTGFDRPNLYLAASVKQ--DDIMADLRKLT-------NFENQFEGSTIIYCPTKVIC 244
T R NL+ K+ D +LR + G I+YC T+ C
Sbjct: 210 ATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKALGQKADKGLLSGCGIVYCRTREAC 269
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
E++ LS G+ + YHA + +R + ++++ + V+VAT +FGMG+DK +VR V
Sbjct: 270 EQLATELSYRGVNAKAYHAGLKASERTLVQNEWMEEKVPVIVATISFGMGVDKANVRFVA 329
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMM 364
H+ K ++ YYQE GRAGRDG S C +Y D + + + + + + + +K
Sbjct: 330 HWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKASD 389
Query: 365 KR-VEKYLELRTCRRKYLLNHFKGSSVTVAESQVPP--DKCCDNCR 407
K + + L T + H +++ PP K CD+CR
Sbjct: 390 KAAILAFDALVTFCEELGCRH---AAIAKYFGDAPPACTKGCDHCR 432
Score = 134 (52.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 64 QVVYMTPEYVTNNT---SFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+++Y+TPE + + + S + R +L + +DEAHCVSQWGHDFRP Y L LR L
Sbjct: 120 KLLYITPEMAASPSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRL 179
Query: 119 PDVPILFLS 127
P + L+
Sbjct: 180 AHAPCIALT 188
Score = 38 (18.4 bits), Expect = 9.0e-37, Sum P(2) = 9.0e-37
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 415 EQVPRGGRMVVENSEVWMSTEARP 438
E+ PRG R + + T+ RP
Sbjct: 846 EETPRGKRPRPQQENLEKQTQKRP 869
>UNIPROTKB|Q6P4G0 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
Length = 964
Score = 401 (146.2 bits), Expect = 3.0e-36, P = 3.0e-36
Identities = 97/290 (33%), Positives = 150/290 (51%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP- 193
+ +DEAHCVSQWGHDFRP Y L LR L P +A+TATATP V +D+ +L L+ P
Sbjct: 127 LVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPV 186
Query: 194 NIINTGFDRPNLYLAASVKQ--DDIMADLRKLT------NFENQFEGSTIIYCPTKVICE 245
I T R NL+ K+ D +L+ + G I+YC T+ CE
Sbjct: 187 AIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACE 246
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
++ LS G+ + YHA + +R + ++++ + V+VAT +FGMG+DK +VR V H
Sbjct: 247 QLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAH 306
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSK---- 361
+ K ++ YYQE GRAGRDG S C +Y D + + + + + + + +K
Sbjct: 307 WNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKASDK 366
Query: 362 -TMMK--RVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH 408
T+M + + E CR + +F G ++ K CD+C++
Sbjct: 367 ATIMAFDALVTFCEELGCRHAAIAKYF-GDALPACA------KGCDHCQN 409
Score = 137 (53.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 64 QVVYMTPEYVTNNT---SFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+++Y+TPE +++ + S + R +L + +DEAHCVSQWGHDFRP Y L LR L
Sbjct: 97 KILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 156
Query: 119 PDVPILFLS 127
P + L+
Sbjct: 157 GHAPCVALT 165
>UNIPROTKB|O94762 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
Ensembl:ENST00000317905 Ensembl:ENST00000340830
Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
Length = 991
Score = 401 (146.2 bits), Expect = 3.2e-36, P = 3.2e-36
Identities = 97/290 (33%), Positives = 150/290 (51%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP- 193
+ +DEAHCVSQWGHDFRP Y L LR L P +A+TATATP V +D+ +L L+ P
Sbjct: 154 LVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPV 213
Query: 194 NIINTGFDRPNLYLAASVKQ--DDIMADLRKLT------NFENQFEGSTIIYCPTKVICE 245
I T R NL+ K+ D +L+ + G I+YC T+ CE
Sbjct: 214 AIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACE 273
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
++ LS G+ + YHA + +R + ++++ + V+VAT +FGMG+DK +VR V H
Sbjct: 274 QLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAH 333
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSK---- 361
+ K ++ YYQE GRAGRDG S C +Y D + + + + + + + +K
Sbjct: 334 WNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKASDK 393
Query: 362 -TMMK--RVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNCRH 408
T+M + + E CR + +F G ++ K CD+C++
Sbjct: 394 ATIMAFDALVTFCEELGCRHAAIAKYF-GDALPACA------KGCDHCQN 436
Score = 137 (53.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 64 QVVYMTPEYVTNNT---SFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+++Y+TPE +++ + S + R +L + +DEAHCVSQWGHDFRP Y L LR L
Sbjct: 124 KILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 183
Query: 119 PDVPILFLS 127
P + L+
Sbjct: 184 GHAPCVALT 192
>UNIPROTKB|I3LFW3 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
Length = 432
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 86/233 (36%), Positives = 127/233 (54%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP- 193
+ +DEAHCVSQWGHDFRP Y L LR L P +A+TATAT V +D+ +L L+ P
Sbjct: 150 LVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVALTATATLQVQEDVFAALHLKQPV 209
Query: 194 NIINTGFDRPNLYLAASVKQ--DDIMADLRKLT------NFENQFEGSTIIYCPTKVICE 245
T R NL+ K+ D +LR + G I+YC T+ CE
Sbjct: 210 ATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKALGQKADKGLSGCGIVYCRTREACE 269
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
++ LS G+ + YHA + +R + +++ + V+VAT +FGMG+DK +VR V H
Sbjct: 270 QLAIELSARGVNAKAYHAGLKAAERTLVQNEWMEGKVPVIVATISFGMGVDKANVRFVAH 329
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQE 358
+ K ++ YYQE GRAGRDG S C +Y D + + + + + +++QE
Sbjct: 330 WNIAKSMAGYYQESGRAGRDGRPSWCRLYYSRNDRDQVSFLIRKEV--AKLQE 380
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 64 QVVYMTPEYVTNNT---SFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+++Y+TPE + + + S + R +L + +DEAHCVSQWGHDFRP Y L LR L
Sbjct: 120 KLLYITPEMAASASFQPTLKSLLARHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 179
Query: 119 PDVPILFLS 127
P + L+
Sbjct: 180 AHAPCVALT 188
>UNIPROTKB|Q47WD5 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 394 (143.8 bits), Expect = 6.1e-36, P = 6.1e-36
Identities = 87/210 (41%), Positives = 120/210 (57%)
Query: 125 FLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184
F+ +P + ++ +DEAHC+S+WGH+FRP Y L L +L +TATAT V D+
Sbjct: 134 FIESVP-VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLLLTATATRKVKQDM 192
Query: 185 CTSLMLRDPNIINTGFDRPNLYLAA-SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243
+RD +I+ TGF R NL L+ V Q L ++ + + +G+ I+Y +
Sbjct: 193 AAKFAIRDEHIVQTGFYRSNLDLSVLPVTQAHKNKQLEQIISAQ---QGAGIVYVTLQHS 249
Query: 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCV 303
E V L + GI YHA R +I F+ I+V+VAT AFGMGIDK ++R V
Sbjct: 250 AETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDKSNIRFV 309
Query: 304 IHYGAPKDLSAYYQEIGRAGRDGLSSVCYT 333
IHY PK + Y QEIGRAGRDGL S C+T
Sbjct: 310 IHYDLPKSIENYSQEIGRAGRDGLPSQCFT 339
>TIGR_CMR|CPS_4237 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 394 (143.8 bits), Expect = 6.1e-36, P = 6.1e-36
Identities = 87/210 (41%), Positives = 120/210 (57%)
Query: 125 FLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184
F+ +P + ++ +DEAHC+S+WGH+FRP Y L L +L +TATAT V D+
Sbjct: 134 FIESVP-VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQALNISLVLLLTATATRKVKQDM 192
Query: 185 CTSLMLRDPNIINTGFDRPNLYLAA-SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243
+RD +I+ TGF R NL L+ V Q L ++ + + +G+ I+Y +
Sbjct: 193 AAKFAIRDEHIVQTGFYRSNLDLSVLPVTQAHKNKQLEQIISAQ---QGAGIVYVTLQHS 249
Query: 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCV 303
E V L + GI YHA R +I F+ I+V+VAT AFGMGIDK ++R V
Sbjct: 250 AETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDKSNIRFV 309
Query: 304 IHYGAPKDLSAYYQEIGRAGRDGLSSVCYT 333
IHY PK + Y QEIGRAGRDGL S C+T
Sbjct: 310 IHYDLPKSIENYSQEIGRAGRDGLPSQCFT 339
>TIGR_CMR|BA_1505 [details] [associations]
symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
Length = 509
Score = 345 (126.5 bits), Expect = 8.5e-36, Sum P(2) = 8.5e-36
Identities = 84/251 (33%), Positives = 137/251 (54%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
L +I I L +DEAHC+SQWG+DFRP Y+ L+ + + +LA+TATAT V+ DI
Sbjct: 124 LKKI-HISLFVVDEAHCISQWGYDFRPDYKKLNVVIENIGSPTVLALTATATKGVLQDIA 182
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRK-LTNFENQFEGSTIIYCPTKVIC 244
SL L+ DRPN+ A V+ + + + ++ L +G I+YC ++
Sbjct: 183 DSLNLKGAAEHVYSIDRPNI--AMDVQFVETIEEKKEALLEQVMYLQGPGIVYCSSRAWT 240
Query: 245 EKVCDVLSRNGIQNRP-YHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCV 303
E++ + L G+ YH + ++R I F+ + +++V+ T AFGMG++K + R +
Sbjct: 241 ERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNNQLQLVICTSAFGMGVNKANTRYI 300
Query: 304 IHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNL-NDSEIQEHSKT 362
IH+ P ++++Y QEIGRAGRDG S+ D I + L + S+IQ
Sbjct: 301 IHFHYPTNIASYLQEIGRAGRDGEPSIAILLCSPLDHDLPISIIEDELPSKSQIQFLFSL 360
Query: 363 MMKRVEKYLEL 373
+ +R+ + EL
Sbjct: 361 LQERMFQTKEL 371
Score = 114 (45.2 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 66 VYMTPEYVTNNTSF--LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLS 112
++++PE + + L +I I L +DEAHC+SQWG+DFRP Y+ L+
Sbjct: 108 IFVSPEMLQSELLIRELKKI-HISLFVVDEAHCISQWGYDFRPDYKKLN 155
Score = 59 (25.8 bits), Expect = 8.5e-36, Sum P(2) = 8.5e-36
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 355 EIQEHSK-TMMKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
EI+ +K + ++ ++ +++++ CRR+Y+L F G E ++ CCD C
Sbjct: 427 EIRLRNKYSELENMKSWIQVKGCRREYVLQQF-GYR---KEQELM--NCCDYC 473
>TAIR|locus:2029799 [details] [associations]
symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
Genevestigator:Q0WVW7 Uniprot:Q0WVW7
Length = 911
Score = 381 (139.2 bits), Expect = 3.7e-34, P = 3.7e-34
Identities = 93/229 (40%), Positives = 124/229 (54%)
Query: 118 LPDVPILFLSRIPRIV-LIAIDEAHCVSQWGHDFRPSYRCL--SELRLPLPDVPILAVTA 174
L +V L + R+ V L+ +DEAHCVS+W H+FRPSY L S L L ILA+TA
Sbjct: 369 LLNVEFLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTA 428
Query: 175 TATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFE-GS 233
TAT + + + +SL + N+I R N L+ S+ + M DL L E S
Sbjct: 429 TATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRS 488
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
I+YC + + + L N I + YH+ + K R I F + I+VVVAT AFGM
Sbjct: 489 IIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGM 548
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK 342
G+DK DV VIH+ P + Y QEIGRAGRDG S C+ FY + K
Sbjct: 549 GLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLK 597
>UNIPROTKB|Q8EEK1 [details] [associations]
symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 369 (135.0 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 87/211 (41%), Positives = 120/211 (56%)
Query: 125 FLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP-ILAVTATATPVVIDD 183
F+ IP +L+ +DEAHC+S+WGH+FRP Y L + L +P +L +TATAT V D
Sbjct: 135 FIQSIPLSMLV-VDEAHCISEWGHNFRPDYLKLPDYCREL-SIPLVLLLTATATRKVKQD 192
Query: 184 ICTSLMLRDPNIINTGFDRPNLYLAA-SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKV 242
+ ++ +I+ TGF R NL L V ++ LR L F+G+ I+Y +
Sbjct: 193 MAIRFDIKPQHIVQTGFYRSNLDLTVLPVASEN---KLRILKQQLQSFDGAGIVYVTLQH 249
Query: 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
E+V L G + YHA +R++I F+ ++VVAT AFGMGIDK ++R
Sbjct: 250 TAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSNIRF 309
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYT 333
VIHY PK + Y QEIGRAGRDG S C T
Sbjct: 310 VIHYDLPKSIENYCQEIGRAGRDGQLSHCVT 340
>TIGR_CMR|SO_2380 [details] [associations]
symbol:SO_2380 "RecQ domain protein" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 369 (135.0 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 87/211 (41%), Positives = 120/211 (56%)
Query: 125 FLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP-ILAVTATATPVVIDD 183
F+ IP +L+ +DEAHC+S+WGH+FRP Y L + L +P +L +TATAT V D
Sbjct: 135 FIQSIPLSMLV-VDEAHCISEWGHNFRPDYLKLPDYCREL-SIPLVLLLTATATRKVKQD 192
Query: 184 ICTSLMLRDPNIINTGFDRPNLYLAA-SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKV 242
+ ++ +I+ TGF R NL L V ++ LR L F+G+ I+Y +
Sbjct: 193 MAIRFDIKPQHIVQTGFYRSNLDLTVLPVASEN---KLRILKQQLQSFDGAGIVYVTLQH 249
Query: 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
E+V L G + YHA +R++I F+ ++VVAT AFGMGIDK ++R
Sbjct: 250 TAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSNIRF 309
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYT 333
VIHY PK + Y QEIGRAGRDG S C T
Sbjct: 310 VIHYDLPKSIENYCQEIGRAGRDGQLSHCVT 340
>TAIR|locus:2180255 [details] [associations]
symbol:RECQSIM "RECQ helicase SIM" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
Genevestigator:Q9FT69 Uniprot:Q9FT69
Length = 858
Score = 258 (95.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 60/160 (37%), Positives = 88/160 (55%)
Query: 227 ENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVV 286
+ EG TIIY PT+ + L G++ Y+A + K +++H F + ++VVV
Sbjct: 493 QKDLEGLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVV 552
Query: 287 ATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346
AT AFGMGIDK +VR +IHYG + L AYYQE GRAGRDG + C + AD ++ +
Sbjct: 553 ATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY---ADLSRAPTL 609
Query: 347 FQPNLNDSEIQEHSKTMMKRVEKY-LELRTCRRKYLLNHF 385
P+ E E + M+ +Y + CR K L+ +F
Sbjct: 610 L-PSRRSKEQTEQAYKMLSDCFRYGMNTSQCRAKILVEYF 648
Score = 215 (80.7 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 60/155 (38%), Positives = 81/155 (52%)
Query: 122 PILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYR---------CLSELRLPLPDVPILAV 172
P+ L++ I L AIDEAHCVS+WGHDFRP YR C S L DVPI+A+
Sbjct: 272 PLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMAL 331
Query: 173 TATATPVVIDDICTSLML-RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFE 231
TATAT V +DI SL L ++ I+ T F RPNL SVK + + +++ F+
Sbjct: 332 TATATVNVQEDILESLHLSKETKIVLTSFFRPNLQF--SVKH----SRTKFASSYAKDFQ 385
Query: 232 GSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHIS 266
+Y K K V+SR + + +H S
Sbjct: 386 NLVDLYSEKKNSTGKKLAVISRESEEQTDFGSHDS 420
Score = 153 (58.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30
Identities = 35/84 (41%), Positives = 47/84 (55%)
Query: 38 LNHFKGSSVTMAESQVP---PDKCCDNCRQVVYMTPEYVTNNTSFLSRIPR---IVLIAI 91
L+ K S+ + Q+ +K Q++Y+ PE V L ++ + I L AI
Sbjct: 228 LSRHKVSACFLGSGQLDNCIEEKAMQGMYQIIYVCPETVVRLIKPLQKLAKTHGIALFAI 287
Query: 92 DEAHCVSQWGHDFRPSYRCLSELR 115
DEAHCVS+WGHDFRP YR LS LR
Sbjct: 288 DEAHCVSKWGHDFRPHYRKLSVLR 311
>FB|FBgn0040290 [details] [associations]
symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0002164 "larval development"
evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
Length = 1579
Score = 230 (86.0 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
Identities = 41/78 (52%), Positives = 56/78 (71%)
Query: 257 QNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYY 316
Q PYHA + +R+ + F+ + +++VVAT AFGMGI+KPD+R VIHY P++ +Y
Sbjct: 1139 QAEPYHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYV 1198
Query: 317 QEIGRAGRDGLSSVCYTF 334
QEIGRAGRDGL S C+ F
Sbjct: 1199 QEIGRAGRDGLPSHCHLF 1216
Score = 189 (71.6 bits), Expect = 3.5e-30, Sum P(2) = 3.5e-30
Identities = 58/154 (37%), Positives = 81/154 (52%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSE-LRLPLPDVPILAVTATATPVVIDDI 184
L ++P I IDEAHCVSQW H+FRPSY + + LR L +L +TATAT I
Sbjct: 987 LRQLPPIAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNLGVRTVLGLTATATLPTRVSI 1046
Query: 185 CTSLMLRDPNI-INTGFDRP-NLYLAASVKQDDIMADLRKLTNFENQFEG--STIIYCPT 240
L + D I + P NL L+ S K ++ A L +L N E +FE S IIYC
Sbjct: 1047 INHLGISDGERGIISDIPLPDNLVLSVS-KDENRDAALLQLLNSE-RFEPCQSIIIYCTR 1104
Query: 241 KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIH 274
+ CE++ + R +Q+R K+RK ++
Sbjct: 1105 RDECERIAGFI-RTCVQDRREPTQDQTKKRKRVN 1137
Score = 116 (45.9 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 71 EYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSY 108
E T + L ++P I IDEAHCVSQW H+FRPSY
Sbjct: 978 ERATGFGAILRQLPPIAFACIDEAHCVSQWSHNFRPSY 1015
>UNIPROTKB|H9KZS5 [details] [associations]
symbol:H9KZS5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0043473 "pigmentation"
evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
Length = 252
Score = 212 (79.7 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 37/74 (50%), Positives = 53/74 (71%)
Query: 261 YHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIG 320
YHA ++ +R+ + F++ ++VVVAT AFGMG+DK DVR V+HY P++ +Y QEIG
Sbjct: 175 YHAGLTAAERRRVQSAFMRGRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFESYVQEIG 234
Query: 321 RAGRDGLSSVCYTF 334
RAGRDG + C+ F
Sbjct: 235 RAGRDGEPAWCHLF 248
Score = 97 (39.2 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 91 IDEAHCVSQWGHDFRPSYRCLSELRLPLP 119
IDEAHC+S+W H+FRPSY L ++ LP
Sbjct: 4 IDEAHCISEWSHNFRPSYLRLCKVCEVLP 32
Score = 97 (39.2 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLP 165
IDEAHC+S+W H+FRPSY L ++ LP
Sbjct: 4 IDEAHCISEWSHNFRPSYLRLCKVCEVLP 32
Score = 68 (29.0 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 170 LAVTATATPVVIDDICTSLML--RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFE 227
LA+TATAT D+ L + +D + PNL L+ SV+ D A + L +
Sbjct: 61 LALTATATVATARDVAAHLGIPQQDGIAVQCAAVPPNLQLSVSVEWDRDRALVNLLRSER 120
Query: 228 NQFEGSTIIYCPTKVICEKVCDVLSRNGIQN 258
S I+YC + +V +L R +Q+
Sbjct: 121 FVALRSIIVYCTRREDTTRVAALL-RTCLQD 150
>UNIPROTKB|A5D786 [details] [associations]
symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
Uniprot:A5D786
Length = 1218
Score = 330 (121.2 bits), Expect = 5.5e-28, P = 5.5e-28
Identities = 81/228 (35%), Positives = 120/228 (52%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDI 184
LS++P + +DEAHC+SQW H+FRP Y R LR + L +TATAT D+
Sbjct: 607 LSQLPPVAFACLDEAHCLSQWSHNFRPCYLRVCQTLRDQMGVHCFLGLTATATRSTALDV 666
Query: 185 CTSLMLRDPNIINTGFDRP-NLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243
L + + +++ P NL+L+ S +D A + L + + GS IIYC +
Sbjct: 667 AWHLGVTEESVLRGPATIPDNLHLSVSSDRDPDQALVTLLRSDRFRALGSVIIYCHRRED 726
Query: 244 CEKV--------CDVLSRNGIQNRP-------YHAHISLKQRKEIHGLFVKDLIKVVVAT 288
E+V CD G R YHA + ++R+ + F++ +++VVAT
Sbjct: 727 TERVAALLRTCLCDAQDP-GPHGRALEAVAEAYHAGLCSRERRRVQRAFMEGRLRMVVAT 785
Query: 289 CAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
AFGMG+D+PDVR V+H G P Y Q +GRAGRDG + C+ F +
Sbjct: 786 VAFGMGLDRPDVRAVLHLGLPPSFETYVQAVGRAGRDGQPAHCHLFLR 833
>UNIPROTKB|O94761 [details] [associations]
symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
"Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
"DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
"DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0007275 "multicellular organismal development"
evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
Pfam:PF11719 Uniprot:O94761
Length = 1208
Score = 325 (119.5 bits), Expect = 6.2e-27, P = 6.2e-27
Identities = 81/224 (36%), Positives = 118/224 (52%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDIC 185
+++P + IDEAHC+SQW H+FRP Y R LR + L +TATAT D+
Sbjct: 594 AQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDVA 653
Query: 186 TSLML-RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVIC 244
L + +P++ NL+L+ S+ +D A L L Q S IIYC +
Sbjct: 654 QHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDT 713
Query: 245 EKVCDVLSR-------NGIQNR-P------YHAHISLKQRKEIHGLFVKDLIKVVVATCA 290
E++ +L G R P YHA + ++R+ + F++ ++VVVAT A
Sbjct: 714 ERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVATVA 773
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
FGMG+D+PDVR V+H G P +Y Q +GRAGRDG + C+ F
Sbjct: 774 FGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLF 817
>UNIPROTKB|F1RSP7 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
Length = 1204
Score = 321 (118.1 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 81/230 (35%), Positives = 121/230 (52%)
Query: 123 ILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVI 181
+ FL+++P + IDEAHC+SQW H+FRP Y R LR + L +TATAT
Sbjct: 599 LAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTA 658
Query: 182 DDICTSLMLRDPNIIN-TGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPT 240
D+ L + + +++ G NL+L+ S+ +D A + L + S IIYC
Sbjct: 659 LDVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVTLLQSDRFCALDSIIIYCNR 718
Query: 241 KVICEKVCDVLS---RNGIQNRP-----------YHAHISLKQRKEIHGLFVKDLIKVVV 286
+ E+V +L R P YHA + ++R + F++ ++VVV
Sbjct: 719 REDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVV 778
Query: 287 ATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
AT AFGMG+D+PDVR V+H G P +Y Q +GRAGRDG + C+ F +
Sbjct: 779 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLR 828
>UNIPROTKB|K7GSZ9 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
Length = 1209
Score = 321 (118.1 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 81/230 (35%), Positives = 121/230 (52%)
Query: 123 ILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVI 181
+ FL+++P + IDEAHC+SQW H+FRP Y R LR + L +TATAT
Sbjct: 604 LAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTA 663
Query: 182 DDICTSLMLRDPNIIN-TGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPT 240
D+ L + + +++ G NL+L+ S+ +D A + L + S IIYC
Sbjct: 664 LDVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVTLLQSDRFCALDSIIIYCNR 723
Query: 241 KVICEKVCDVLS---RNGIQNRP-----------YHAHISLKQRKEIHGLFVKDLIKVVV 286
+ E+V +L R P YHA + ++R + F++ ++VVV
Sbjct: 724 REDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVV 783
Query: 287 ATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
AT AFGMG+D+PDVR V+H G P +Y Q +GRAGRDG + C+ F +
Sbjct: 784 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLR 833
>UNIPROTKB|F1RV44 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
Length = 1227
Score = 321 (118.1 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 81/230 (35%), Positives = 121/230 (52%)
Query: 123 ILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVI 181
+ FL+++P + IDEAHC+SQW H+FRP Y R LR + L +TATAT
Sbjct: 622 LAFLTQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTA 681
Query: 182 DDICTSLMLRDPNIIN-TGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPT 240
D+ L + + +++ G NL+L+ S+ +D A + L + S IIYC
Sbjct: 682 LDVAQHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVTLLQSDRFCALDSIIIYCNR 741
Query: 241 KVICEKVCDVLS---RNGIQNRP-----------YHAHISLKQRKEIHGLFVKDLIKVVV 286
+ E+V +L R P YHA + ++R + F++ ++VVV
Sbjct: 742 REDTERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVV 801
Query: 287 ATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
AT AFGMG+D+PDVR V+H G P +Y Q +GRAGRDG + C+ F +
Sbjct: 802 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLR 851
>RGD|1307732 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
"pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
ArrayExpress:D4A5W5 Uniprot:D4A5W5
Length = 1216
Score = 316 (116.3 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 78/224 (34%), Positives = 120/224 (53%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDIC 185
+++P + IDE HC+SQW H+FRP Y R LR + L +TATAT D+
Sbjct: 616 AQLPPVAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVA 675
Query: 186 TSLMLRDPNIINTGFDRP-NLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVIC 244
L + + ++ P NL+L+ S+ +D A + L + S IIYC +
Sbjct: 676 QHLGIAEELEVSGSASIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSIIIYCARRKDT 735
Query: 245 EKVCDVLSR--NGIQN-RP-----------YHAHISLKQRKEIHGLFVKDLIKVVVATCA 290
E+V +L + +++ +P YHA + ++RK + F++ +++VVAT A
Sbjct: 736 ERVAALLRTCLSTVRDSKPRGRGPETLAEAYHAGMCSQERKRVQQAFMQGHLRMVVATVA 795
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
FGMG+D+PDVR V+H G P +Y Q IGRAGRDG + C+ F
Sbjct: 796 FGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839
>MGI|MGI:1931028 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
Length = 1216
Score = 311 (114.5 bits), Expect = 5.6e-25, P = 5.6e-25
Identities = 82/227 (36%), Positives = 119/227 (52%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDIC 185
+++P I IDE HC+SQW H+FRP Y R LR + L +TATAT D+
Sbjct: 616 AQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVA 675
Query: 186 TSLMLRDPNIINTGFDRP-NLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVIC 244
L + ++ + P NL+L+ S+ +D A + L + S IIYC + I
Sbjct: 676 QHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVIIYCTRERIQ 735
Query: 245 E------KVCDVLSRNGIQNRP-----------YHAHISLKQRKEIHGLFVKDLIKVVVA 287
+ C LS G +RP YHA +S ++R+ + F++ +++VVA
Sbjct: 736 NGWLALLRTC--LSMVG-DSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVVA 792
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
T AFGMG+D+PDVR V+H G P +Y Q IGRAGRDG + C+ F
Sbjct: 793 TVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839
>ASPGD|ASPL0000072255 [details] [associations]
symbol:recQ species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
Length = 541
Score = 187 (70.9 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 44/87 (50%), Positives = 54/87 (62%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPL--PDVPILAVTATATPVVIDDICTSLM 189
+V IAIDEAHC+S+WGHDFRP+Y+ LS R L P VPI A+TATAT V DI L
Sbjct: 126 LVRIAIDEAHCISEWGHDFRPAYKALSWFRHSLTNPPVPISALTATATSQVRTDIINILG 185
Query: 190 L--RDPNIINTGFDRPNLYLAASVKQD 214
L R I +T RPN++ Q+
Sbjct: 186 LNPRRLKIFSTPSARPNIHYEIRFMQE 212
Score = 167 (63.8 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 42/119 (35%), Positives = 62/119 (52%)
Query: 233 STIIYCPTKVICEKVCDVL--SRNGIQNRPYHAHISLKQRKEIHGLFV------------ 278
S I+Y T+V E++ VL S N I+ YHA + R + ++
Sbjct: 255 SGIVYVSTRVAAERLAHVLCQSDNRIRAVAYHAGLVAADRVRVQNEWIAPQKQPQQRGPG 314
Query: 279 -KDL-IKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
K + ++VAT AFGMGID P+VR V+H+ P+ + QE GRAGRDG ++ +Y
Sbjct: 315 AKPVTFYIIVATTAFGMGIDNPEVRFVVHWSPPRTFEGFVQESGRAGRDGRAAASIVYY 373
Score = 165 (63.1 bits), Expect = 7.1e-22, Sum P(3) = 7.1e-22
Identities = 41/93 (44%), Positives = 58/93 (62%)
Query: 44 SSVTMAESQVP-PDKCCDNCR-QVVYMTPEYVTNNT-----SFLSRIPRIVLIAIDEAHC 96
S+V++AE +V D + R +++Y+TPE NNT + + +V IAIDEAHC
Sbjct: 77 STVSLAERRVILEDLLSGHPRIRLLYVTPELCQNNTFRRNLQTMHKQRELVRIAIDEAHC 136
Query: 97 VSQWGHDFRPSYRCLSELRLPL--PDVPILFLS 127
+S+WGHDFRP+Y+ LS R L P VPI L+
Sbjct: 137 ISEWGHDFRPAYKALSWFRHSLTNPPVPISALT 169
Score = 40 (19.1 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 361 KTMMKRVEKYLELRT-CRRKYLLNHFKGSSVTVAESQVPP--DKCCDNCRH 408
K ++V +Y E T CR + + F + SQV C D+ H
Sbjct: 418 KQSFEKVVRYCETTTRCRHELIKEFFGDLELVKMGSQVSKLQSACHDDNDH 468
Score = 38 (18.4 bits), Expect = 3.3e-24, Sum P(3) = 3.3e-24
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 383 NHFKGSSVTVAESQVPPDKCCDNCR 407
+H T + P D CD C+
Sbjct: 467 DHGSAGGATSSSPSSPCDYACDFCK 491
>UNIPROTKB|Q4JNX8 [details] [associations]
symbol:RTS "RECQL4-helicase-like protein" species:8355
"Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
Uniprot:Q4JNX8
Length = 1500
Score = 208 (78.3 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 261 YHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIG 320
YHA +S +R+ + F+ +++VVAT AFGMG+DK DVR +IHY PK+ +Y QEIG
Sbjct: 1020 YHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQEIG 1079
Query: 321 RAGRDGLSSVCYTF 334
RAGRDG + C+ F
Sbjct: 1080 RAGRDGKDAQCHLF 1093
Score = 157 (60.3 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 46/150 (30%), Positives = 74/150 (49%)
Query: 128 RIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDICT 186
++P + IDEAHCVS+W H+FRP Y R LR L +L +TATAT +D+
Sbjct: 846 QLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVNCLLGLTATATRATAEDVAH 905
Query: 187 SLMLR-DPNI-INTGFDRPNLYLAASV--KQDDIMADLRKLTNFENQFEGSTIIYCPTKV 242
L + + I + PNL+L+ S+ +D + L K F S I+YC +
Sbjct: 906 HLGVSPEGGIPVRMASVPPNLHLSVSMDRNRDQALVTLLKGERFGCL--DSVIVYCTRRE 963
Query: 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKE 272
+++ +L R +Q A+ L +++
Sbjct: 964 ETQRISALL-RTSLQGVTVSANSHLNSQEQ 992
Score = 105 (42.0 bits), Expect = 5.7e-19, Sum P(2) = 5.7e-19
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 44 SSVTMAESQVPPDKCCDNCRQVVYMTPEYVT----NNTSFL---SRIPRIVLIAIDEAHC 96
S++T + + +K V+ ++PE + + +S L ++P + IDEAHC
Sbjct: 801 SNMTRTQREAAIEKVKQGKVHVLLLSPEALVGGGFSGSSCLPPADQLPPVAFACIDEAHC 860
Query: 97 VSQWGHDFRPSY-RCLSELR 115
VS+W H+FRP Y R LR
Sbjct: 861 VSEWSHNFRPCYLRLCKVLR 880
>UNIPROTKB|Q33DM4 [details] [associations]
symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
[GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0035563 "positive regulation of chromatin
binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
Xenbase:XB-GENE-997817 Uniprot:Q33DM4
Length = 1503
Score = 208 (78.3 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 38/74 (51%), Positives = 52/74 (70%)
Query: 261 YHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIG 320
YHA +S +R+ + F+ +++VVAT AFGMG+DK DVR +IHY PK+ +Y QEIG
Sbjct: 1023 YHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQEIG 1082
Query: 321 RAGRDGLSSVCYTF 334
RAGRDG + C+ F
Sbjct: 1083 RAGRDGKDAQCHLF 1096
Score = 157 (60.3 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 46/150 (30%), Positives = 74/150 (49%)
Query: 128 RIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDICT 186
++P + IDEAHCVS+W H+FRP Y R LR L +L +TATAT +D+
Sbjct: 849 QLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVNCLLGLTATATRATAEDVAH 908
Query: 187 SLMLR-DPNI-INTGFDRPNLYLAASV--KQDDIMADLRKLTNFENQFEGSTIIYCPTKV 242
L + + I + PNL+L+ S+ +D + L K F S I+YC +
Sbjct: 909 HLGVSPEGGIPVRMASVPPNLHLSVSMDRNRDQALVTLLKGERFGCL--DSVIVYCTRRE 966
Query: 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKE 272
+++ +L R +Q A+ L +++
Sbjct: 967 ETQRISALL-RTSLQGVTVSANSHLNSQEQ 995
Score = 105 (42.0 bits), Expect = 5.7e-19, Sum P(2) = 5.7e-19
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 44 SSVTMAESQVPPDKCCDNCRQVVYMTPEYVT----NNTSFL---SRIPRIVLIAIDEAHC 96
S++T + + +K V+ ++PE + + +S L ++P + IDEAHC
Sbjct: 804 SNMTRTQREAAIEKVKQGKVHVLLLSPEALVGGGFSGSSCLPPADQLPPVAFACIDEAHC 863
Query: 97 VSQWGHDFRPSY-RCLSELR 115
VS+W H+FRP Y R LR
Sbjct: 864 VSEWSHNFRPCYLRLCKVLR 883
>UNIPROTKB|F1RMJ2 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR018982 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0043140 GeneTree:ENSGT00550000074520
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:CT757491
Ensembl:ENSSSCT00000002035 OMA:REMTENT Uniprot:F1RMJ2
Length = 511
Score = 274 (101.5 bits), Expect = 2.2e-21, P = 2.2e-21
Identities = 64/163 (39%), Positives = 84/163 (51%)
Query: 247 VCDVLSRNGIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
+ D L ++G+ YHA +S R E+ H +D +V+ AT AFGMGIDKPDVR VIH
Sbjct: 1 MADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIH 60
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFT--KNNMIFQPNLNDSEIQEHSKTM 363
PK + YYQE GRAGRDG S C FY D T K ++ + + N + H +
Sbjct: 61 ASLPKSVEGYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLILMEKDGNHHTKETHFNNL 120
Query: 364 MKRVEKYLELRTCRRKYLLNHFKGSSVTVAESQVPPDKCCDNC 406
V + CRR LL +F + + PD CDNC
Sbjct: 121 YSMVHYCENIAECRRIQLLAYFGENEFNPNFCKKYPDVSCDNC 163
>UNIPROTKB|Q47ZX4 [details] [associations]
symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 239 (89.2 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 74/249 (29%), Positives = 122/249 (48%)
Query: 121 VPILF-LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV---PI--LAVTA 174
+P+LF L++ I I IDEAH + WG +FR ++ L L V P + ++A
Sbjct: 264 LPLLFRLAKQNSIANIIIDEAHLIDTWGSNFRSEFQRFGALVASLRQVSNSPFKTILMSA 323
Query: 175 TATPVVIDDICTSLMLRD--PNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEG 232
T T I + T D P ++N F RP + ++S K + L+ +
Sbjct: 324 TFTQSNIGSLTTLYCESDNKPIVVNGNFLRPEI--SSSYKNEGENNHLQSVVGRVIALPK 381
Query: 233 STIIYCPTKVICEKV---CDVLSRNGIQNRP--YHAHISLKQRKEIHGLFVKDLIKVVVA 287
I+Y T ++ + + C L G+ NR ++ ++ R++I + KD + +++A
Sbjct: 382 PLILY--TTLVQDSIDLSCH-LKAIGL-NRIALFNGKTDIRSREKIIEQWQKDDLDIIIA 437
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIF 347
T AFG+G+DK +V+ VIH P ++ YYQEIGRAGRDG ++ Y K I
Sbjct: 438 TSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGRAGRDGEAATSEVIYYNKQLAKAKKIN 497
Query: 348 QPNLNDSEI 356
+ +E+
Sbjct: 498 SERIISTEL 506
>TIGR_CMR|CPS_2945 [details] [associations]
symbol:CPS_2945 "putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 239 (89.2 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 74/249 (29%), Positives = 122/249 (48%)
Query: 121 VPILF-LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDV---PI--LAVTA 174
+P+LF L++ I I IDEAH + WG +FR ++ L L V P + ++A
Sbjct: 264 LPLLFRLAKQNSIANIIIDEAHLIDTWGSNFRSEFQRFGALVASLRQVSNSPFKTILMSA 323
Query: 175 TATPVVIDDICTSLMLRD--PNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEG 232
T T I + T D P ++N F RP + ++S K + L+ +
Sbjct: 324 TFTQSNIGSLTTLYCESDNKPIVVNGNFLRPEI--SSSYKNEGENNHLQSVVGRVIALPK 381
Query: 233 STIIYCPTKVICEKV---CDVLSRNGIQNRP--YHAHISLKQRKEIHGLFVKDLIKVVVA 287
I+Y T ++ + + C L G+ NR ++ ++ R++I + KD + +++A
Sbjct: 382 PLILY--TTLVQDSIDLSCH-LKAIGL-NRIALFNGKTDIRSREKIIEQWQKDDLDIIIA 437
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIF 347
T AFG+G+DK +V+ VIH P ++ YYQEIGRAGRDG ++ Y K I
Sbjct: 438 TSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIGRAGRDGEAATSEVIYYNKQLAKAKKIN 497
Query: 348 QPNLNDSEI 356
+ +E+
Sbjct: 498 SERIISTEL 506
>ASPGD|ASPL0000073665 [details] [associations]
symbol:AN5092 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001303
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GO:GO:0008026 EMBL:AACD01000086 InterPro:IPR022698 Pfam:PF12013
RefSeq:XP_662696.1 ProteinModelPortal:Q5B2Y8
EnsemblFungi:CADANIAT00005288 GeneID:2872891 KEGG:ani:AN5092.2
HOGENOM:HOG000217656 OrthoDB:EOG45XC49 Uniprot:Q5B2Y8
Length = 1571
Score = 199 (75.1 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 65/194 (33%), Positives = 95/194 (48%)
Query: 231 EGSTIIYCPTKVICEKV-CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATC 289
+G I+Y K + + C++ G + YH+ + L Q + F +++ AT
Sbjct: 1136 DGQVIVYANIKSQVDAISCEL----GCE--AYHSAV-LDQTGVMQR-FQSSQTRIIAATS 1187
Query: 290 AFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQP 349
A GMGID PD+RCVIH G P+ L Y QE GRAGRDGL+S + + +
Sbjct: 1188 ALGMGIDIPDIRCVIHLGRPRTLLDYSQESGRAGRDGLASKAVIVHPQGWDDLDPWV--D 1245
Query: 350 NLNDSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSV---TVAESQ-VPPDKC-CD 404
++D+E EH + M+ VE CRR Y+L+ + +V T + Q PDK CD
Sbjct: 1246 RVSDAEF-EHIQAYMEVVEGV----GCRR-YVLDQYLDGTVDGYTRQQCQDQDPDKLPCD 1299
Query: 405 NCRHNEMLELEQVP 418
CR + E P
Sbjct: 1300 ACRPDRQDERTPTP 1313
Score = 81 (33.6 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 43/139 (30%), Positives = 64/139 (46%)
Query: 43 GSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNT--SFLSR---IPRIVLIAIDEAHCV 97
G S ES+ PPD+ +V +TPE N +FL+R + R+ I IDE H +
Sbjct: 981 GISCVSWESRRPPDEAA-----IVLVTPESTENPDFHTFLNRQRQMRRLDRIVIDECHVI 1035
Query: 98 SQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEA-------HCVSQWG-HD 149
DF+P+ L RL ++FL+ + L I+EA H S+ G H
Sbjct: 1036 LNDQKDFQPAMARLG--RLVSAQTQLVFLTAM----LPPIEEARFLRRIKHQRSEVGIHR 1089
Query: 150 FRPSYRCLSELRLPLPDVP 168
R S R ++ R+ P +P
Sbjct: 1090 ARTSRRNVA-YRMVRPSLP 1107
Score = 54 (24.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 125 FLSR---IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPV 179
FL+R + R+ I IDE H + DF+P+ L RL ++ +TA P+
Sbjct: 1014 FLNRQRQMRRLDRIVIDECHVILNDQKDFQPAMARLG--RLVSAQTQLVFLTAMLPPI 1069
>UNIPROTKB|J3KSL7 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00690 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000580078
Uniprot:J3KSL7
Length = 198
Score = 186 (70.5 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 39/80 (48%), Positives = 49/80 (61%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP- 193
+ +DEAHCVSQWGHDFRP Y L LR L P +A+TATATP V +D+ +L L+ P
Sbjct: 58 LVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPV 117
Query: 194 NIINTGFDRPNLYLAASVKQ 213
I T R NL+ K+
Sbjct: 118 AIFKTPCFRANLFYDVQFKE 137
Score = 137 (53.3 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 64 QVVYMTPEYVTNNT---SFLSRIPRIVL--IAIDEAHCVSQWGHDFRPSYRCLSELRLPL 118
+++Y+TPE +++ + S + R +L + +DEAHCVSQWGHDFRP Y L LR L
Sbjct: 28 KILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 87
Query: 119 PDVPILFLS 127
P + L+
Sbjct: 88 GHAPCVALT 96
>POMBASE|SPBCPT2R1.08c [details] [associations]
symbol:tlh2 "RecQ type DNA helicase Tlh1" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 PomBase:SPBCPT2R1.08c
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000722 HOGENOM:HOG000213224 OrthoDB:EOG4XH37R
EMBL:BX784043 RefSeq:XP_001713158.1 ProteinModelPortal:Q1RKN3
EnsemblFungi:SPBCPT2R1.08c.1 GeneID:5802845 KEGG:spo:SPBCPT2R1.08c
NextBio:20892152 Uniprot:Q1RKN3
Length = 1919
Score = 195 (73.7 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 71/236 (30%), Positives = 107/236 (45%)
Query: 126 LSRIPRIVLIAIDEAHCV---SQWGHDFRPSYRCLSELRLPLPDVPILAVT--ATATPVV 180
L+ + R+ + IDEAH + W + R LS L PL +L+ T V
Sbjct: 1310 LATLGRLARVVIDEAHLLLTSGAWRTALSRASR-LSGLYAPLH---LLSATFPRQLEMVA 1365
Query: 181 IDDICTSL-MLRDPNIINTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGS--TII 236
CT+ +LR+ T R N+ Y + + DLR L FEG II
Sbjct: 1366 RQTFCTNFYVLRE-----TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAII 1420
Query: 237 YCPTKVICEKVCDVLSRNGIQNRP----YHAHISLKQRKEIHGLF--VKDLIKVVVATCA 290
+C TK E + L ++ + Y +S ++R+ F ++++AT A
Sbjct: 1421 FCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKA 1480
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346
FG+GI+ VR V+HYG P Y QE GRAGRDG ++ FY+ D T ++ +
Sbjct: 1481 FGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYV 1536
>POMBASE|SPAC212.11 [details] [associations]
symbol:tlh1 "RecQ type DNA helicase" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004695 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF03595 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 PomBase:SPBCPT2R1.08c GO:GO:0016021 GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0055085 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000781
GO:GO:0000722 eggNOG:COG0514 EMBL:BK005597
ProteinModelPortal:Q5EAK4 TCDB:2.A.16.2.2 HOGENOM:HOG000213224
OrthoDB:EOG4XH37R NextBio:20892297 Uniprot:Q5EAK4
Length = 2100
Score = 195 (73.7 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 71/236 (30%), Positives = 107/236 (45%)
Query: 126 LSRIPRIVLIAIDEAHCV---SQWGHDFRPSYRCLSELRLPLPDVPILAVT--ATATPVV 180
L+ + R+ + IDEAH + W + R LS L PL +L+ T V
Sbjct: 1491 LATLGRLARVVIDEAHLLLTSGAWRTALSRASR-LSGLYAPLH---LLSATFPRQLEMVA 1546
Query: 181 IDDICTSL-MLRDPNIINTGFDRPNL-YLAASVKQDDIMADLRKLTNFENQFEGS--TII 236
CT+ +LR+ T R N+ Y + + DLR L FEG II
Sbjct: 1547 RQTFCTNFYVLRE-----TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAII 1601
Query: 237 YCPTKVICEKVCDVLSRNGIQNRP----YHAHISLKQRKEIHGLF--VKDLIKVVVATCA 290
+C TK E + L ++ + Y +S ++R+ F ++++AT A
Sbjct: 1602 FCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKA 1661
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346
FG+GI+ VR V+HYG P Y QE GRAGRDG ++ FY+ D T ++ +
Sbjct: 1662 FGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDSTWSSYV 1717
>UNIPROTKB|F1RMJ3 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
Uniprot:F1RMJ3
Length = 541
Score = 186 (70.5 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 137 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNI 195
IDEAHCVSQWGHDFRP Y+ ++ LR P VP++A+TATA P V DI T L + P +
Sbjct: 483 IDEAHCVSQWGHDFRPDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQLKILRPQV 541
Score = 157 (60.3 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 64 QVVYMTPEYVTNNTSFLSRIPRIV---LIA---IDEAHCVSQWGHDFRPSYRCLSELRLP 117
+++Y+TPE V + +S + + L+A IDEAHCVSQWGHDFRP Y+ ++ LR
Sbjct: 450 KLLYVTPEKVCASNRLISTLENLYNRKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQK 509
Query: 118 LPDVPILFLSRI--PRI 132
P VP++ L+ PR+
Sbjct: 510 FPSVPVMALTATANPRV 526
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 184 (69.8 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 64/225 (28%), Positives = 105/225 (46%)
Query: 123 ILFLSRIP--RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180
IL + RI ++ + +DEA + G F P R + +P ++ TAT P
Sbjct: 365 ILEMKRISLHQVSYLVLDEADRMLDMG--FEPQIRKIVN-EVPTKRQTLM-YTAT-WPKE 419
Query: 181 IDDICTSLMLRDPNIINTGFDRPNLYLAASVKQD-DIMADLRKLTNFE----NQFEGSTI 235
+ I L++ +P +N G + L S+ Q +++A + K + E +Q GS I
Sbjct: 420 VRKIAADLLV-NPAQVNIG-NVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKI 477
Query: 236 I-YCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMG 294
I +C TK +C+++ L+R H S +R ++ F V+VAT G
Sbjct: 478 IIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARG 536
Query: 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
+D D+R V++Y P + Y IGR GR G + + YTF+ D
Sbjct: 537 LDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 581
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 175 (66.7 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 64/225 (28%), Positives = 103/225 (45%)
Query: 123 ILFLSRIP--RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVV 180
IL + RI +I + +DEA + G F P R + + +P ++ TAT P
Sbjct: 294 ILEMRRISLRQISYLVLDEADRMLDMG--FEPQIRKIVK-EIPTKRQTLM-YTAT-WPKG 348
Query: 181 IDDICTSLMLRDPNIINTGFDRPNLYLAASVKQD-DIMADLRKLTNFE----NQFEGS-T 234
+ I L++ +P +N G + L S+ Q +++A + K E +Q GS
Sbjct: 349 VRKIAADLLV-NPAQVNIG-NVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKV 406
Query: 235 IIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMG 294
II+C TK +C+++ L+R H S +R + F V+VAT G
Sbjct: 407 IIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARG 465
Query: 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
+D D+R V++Y P + Y IGR GR G + +TF+ D
Sbjct: 466 LDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQD 510
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 176 (67.0 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 62/228 (27%), Positives = 107/228 (46%)
Query: 118 LPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
L D+ L +++ R+ + +DEA + +G F P + LS + PD L +AT
Sbjct: 439 LIDMIKLKATKLNRVSYLVLDEADKMFDFG--FGP--QVLSIVNHVRPDRQTLLFSATFK 494
Query: 178 PVVIDDICTSLMLRDPNIINTGF-DRPNLYLAASVKQDDIMADLRKLTNFENQF-----E 231
P V ++ ++ L DP I+ G N + V+ + +D K NQ +
Sbjct: 495 PNV-EEFARTI-LSDPIKISIGMIGSANSDITQIVQV--LKSDSDKWNWLTNQLALLLSQ 550
Query: 232 GSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAF 291
GS +I+ TKV E++ L++ G Q H + +R + F + I +++AT
Sbjct: 551 GSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVA 610
Query: 292 GMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
G+D P ++ V++Y +D+ ++ IGR GR G + V YT D
Sbjct: 611 ARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKD 658
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 172 (65.6 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 63/223 (28%), Positives = 99/223 (44%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R+ + +DEA + G F P R +S++R PD L +AT P ++ +
Sbjct: 308 TNLKRVTYLVLDEADRMLDMG--FEPQIRKIVSQIR---PDRQTLLWSAT-WPREVETLA 361
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQD-DIMADLRK----LTNFENQFEGSTI-IYCP 239
LRDP G +L S+ Q +I+ K LT + +GS I I+
Sbjct: 362 RQF-LRDPYKAIIG--STDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVE 418
Query: 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
TK C++V L +G H + +R + F ++ AT G+D D
Sbjct: 419 TKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKD 478
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK 342
++CV++Y P L Y IGR GR G + +TF+ T D K
Sbjct: 479 IKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFF-THDNAK 520
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 168 (64.2 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 55/217 (25%), Positives = 94/217 (43%)
Query: 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSL 188
+ R+ + DEA + G +++ S +R PD L +AT I+ + +
Sbjct: 402 LQRVTFLVFDEADRMFDMGFEYQVR-SIASHVR---PDRQTLLFSATFRKK-IEKLARDI 456
Query: 189 MLRDP-NIINTGFDRPNLYLAASVK-----QDDIMADLRKLTNFENQFEGSTIIYCPTKV 242
++ DP ++ N + V+ QD R+L F + GS +++ K
Sbjct: 457 LV-DPIRVVQGDIGEANEDITQIVEVLQSGQDKWGWLTRRLVEFTSA--GSVLVFVTKKA 513
Query: 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
CE++ L + G H + +R ++ F K + V+VAT G+D P +R
Sbjct: 514 NCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRT 573
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
V++Y +D+ + IGR GR G V YT T D
Sbjct: 574 VVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKD 610
>UNIPROTKB|J3KRM6 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
Uniprot:J3KRM6
Length = 118
Score = 141 (54.7 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPN 350
FGMG+DK +VR V H+ K ++ YYQE GRAGRDG S C +Y D + + + +
Sbjct: 2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKE 61
Query: 351 LNDSEIQE 358
+ +++QE
Sbjct: 62 V--AKLQE 67
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 163 (62.4 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 58/222 (26%), Positives = 96/222 (43%)
Query: 128 RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187
++ + L+ +DEA + + G F+ + + R PL D L +AT P I I S
Sbjct: 150 QLDNLNLLVLDEADRMLEMG--FQAALDNIVG-RTPL-DRQTLLFSATF-PDQIKSISES 204
Query: 188 LMLRDPNIINTGFDRPNLYLAAS---VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVIC 244
+M DP ++ ++ V DD D +L NQ E ST I+C TK
Sbjct: 205 IMT-DPVMVKIASSEDQSTISQKFFKVGNDDDRLDALRLLLLGNQVE-STAIFCNTKKET 262
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
++V D L +G H + + R + F ++VAT G+D + VI
Sbjct: 263 QQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVI 322
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346
+Y +D + IGR GR G + + Y+ + + K ++
Sbjct: 323 NYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLL 364
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 163 (62.4 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 58/222 (26%), Positives = 96/222 (43%)
Query: 128 RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187
++ + L+ +DEA + + G F+ + + R PL D L +AT P I I S
Sbjct: 150 QLDNLNLLVLDEADRMLEMG--FQAALDNIVG-RTPL-DRQTLLFSATF-PDQIKSISES 204
Query: 188 LMLRDPNIINTGFDRPNLYLAAS---VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVIC 244
+M DP ++ ++ V DD D +L NQ E ST I+C TK
Sbjct: 205 IMT-DPVMVKIASSEDQSTISQKFFKVGNDDDRLDALRLLLLGNQVE-STAIFCNTKKET 262
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
++V D L +G H + + R + F ++VAT G+D + VI
Sbjct: 263 QQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVI 322
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346
+Y +D + IGR GR G + + Y+ + + K ++
Sbjct: 323 NYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLL 364
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 166 (63.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 63/246 (25%), Positives = 106/246 (43%)
Query: 113 ELRLPLPDVPILFLSR----IPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDV 167
E+ + P I FL R + R + +DEA + G F P R + ++R PD
Sbjct: 282 EIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMG--FEPQIRKIMQQIR---PDR 336
Query: 168 PILAVTATATPVVIDDICTSLMLR--DPNIINTGFD-RPNLYLAASV--KQDDIMADLRK 222
+L +AT P + + + NI + N+ V + + +M ++
Sbjct: 337 QVLMWSAT-WPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKL 395
Query: 223 LTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLI 282
LT+ + E TII+ TK +++ +SR G + H S ++R + F
Sbjct: 396 LTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRH 455
Query: 283 KVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK 342
++VAT G+D DV+ VI+Y P + Y IGR GR + YT + ++ K
Sbjct: 456 SILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANK 515
Query: 343 NNMIFQ 348
N + Q
Sbjct: 516 ANDLIQ 521
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 164 (62.8 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 55/186 (29%), Positives = 82/186 (44%)
Query: 190 LRDPNIINTGFDRPNLYLAAS----VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICE 245
LR+P ++ G L + +K+ + L+KL + E + I++ TK C+
Sbjct: 533 LRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKL--LDELGEKTAIVFVNTKKNCD 590
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRK-EIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
+ L + G + H S +QR+ + G K V+VAT G GID PDV VI
Sbjct: 591 SIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRY-NVLVATDVVGRGIDIPDVAHVI 649
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD----FTKNNMIFQPNLN-DSEIQEH 359
+Y PK + Y IGR GR G S V +F D + M+ Q N E+ H
Sbjct: 650 NYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARH 709
Query: 360 SKTMMK 365
+ K
Sbjct: 710 EASRFK 715
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 165 (63.1 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 63/228 (27%), Positives = 102/228 (44%)
Query: 118 LPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT 177
L D+ + + ++ L+ +DEA + G F P R + +P P L TAT
Sbjct: 568 LNDILEMKMIDFQQVSLLVLDEADRMLDMG--FEPQIRKIVN-EIP-PRRQTLMYTAT-W 622
Query: 178 PVVIDDICTSLMLRDPNIINTG-FDR--PNLYLAASVKQDDIMADLRKLTNF-ENQFEGS 233
P + I + L++ +P +N G D N + V+ M R+L +Q GS
Sbjct: 623 PKEVRKIASDLLV-NPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGS 681
Query: 234 -TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG 292
II+C TK +C+ + + R+ H + +R + F V++AT
Sbjct: 682 KVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAA 740
Query: 293 MGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340
G+D D+R VI+Y P + Y IGR GR G + V +TF+ D+
Sbjct: 741 RGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDW 788
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 158 (60.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 50/190 (26%), Positives = 88/190 (46%)
Query: 157 LSELRLPLPDVPILAVTATATPVVIDDICT--SLMLRDPNIINTGFDRPNLYLAASVKQD 214
+ E++ L VP T + + D I + +LRDP I +PN AA ++Q
Sbjct: 167 MDEIQAVLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVA--KPNT-TAAQIEQR 223
Query: 215 DIMADLRKLTNFENQFEGS-----TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQ 269
D + T F + S +I+ TK +K+ L++ G+ + +H +S
Sbjct: 224 VYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGA 283
Query: 270 RKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSS 329
R+++ F + L++V+VAT G+D +++ VI++ P Y IGR GR G +
Sbjct: 284 REKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAG 343
Query: 330 VCYTFYKTAD 339
+ T + D
Sbjct: 344 LAITLFSQED 353
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 158 (60.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 50/190 (26%), Positives = 88/190 (46%)
Query: 157 LSELRLPLPDVPILAVTATATPVVIDDICT--SLMLRDPNIINTGFDRPNLYLAASVKQD 214
+ E++ L VP T + + D I + +LRDP I +PN AA ++Q
Sbjct: 167 MDEIQAVLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVA--KPNT-TAAQIEQR 223
Query: 215 DIMADLRKLTNFENQFEGS-----TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQ 269
D + T F + S +I+ TK +K+ L++ G+ + +H +S
Sbjct: 224 VYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGA 283
Query: 270 RKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSS 329
R+++ F + L++V+VAT G+D +++ VI++ P Y IGR GR G +
Sbjct: 284 REKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAG 343
Query: 330 VCYTFYKTAD 339
+ T + D
Sbjct: 344 LAITLFSQED 353
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 159 (61.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 57/220 (25%), Positives = 96/220 (43%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R+ + +DEA + G D P R +S +R PD L +AT P ++ +
Sbjct: 242 TNLRRVTYLVLDEADRMLDMGFD--PQIRKIVSHIR---PDRQTLYWSAT-WPKEVEQLS 295
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQD-DIMADLRKLTNF----ENQFEGSTI-IYCP 239
+ +I D L +++Q D++++ +K E+ +GS I ++
Sbjct: 296 KKFLYNPYKVIIGSSD---LKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLD 352
Query: 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
TK C+++ L +G H S +R + F ++ AT G+D D
Sbjct: 353 TKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKD 412
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
V+ VI+Y P L Y IGR GR G YTF+ A+
Sbjct: 413 VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 160 (61.4 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 62/257 (24%), Positives = 111/257 (43%)
Query: 129 IPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDICTS 187
+ I + +DEA + G F P R + ++R PD + +AT P V + S
Sbjct: 428 VSTITYLVLDEADRMLDMG--FEPQIRKVMLDIR---PDRQTIMTSATWPPGV-RRLAQS 481
Query: 188 LMLRDPNIINTGFDRPNLYLAA--SVKQ-----DDIMADLRKLTNFENQFEGST--IIYC 238
M ++P + G +L LAA SVKQ +D M +T+F + II+C
Sbjct: 482 YM-KNPIQVCVG----SLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMSSTDKIIIFC 536
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
KV + + L+ +G + H + R++ +++++VAT G+D
Sbjct: 537 GRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATDVASRGLDIE 596
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLN-DSEIQ 357
D+ VI+Y P ++ Y +GR GR G +F+ D+ + + + E+
Sbjct: 597 DITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVP 656
Query: 358 EHSKTMMKRVEKYLELR 374
+ M +R + + R
Sbjct: 657 DELHNMARRFKAMKDKR 673
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 160 (61.4 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 50/210 (23%), Positives = 88/210 (41%)
Query: 125 FLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDI 184
F +R+ + ++ +DEA + G FR R + + +P + + P + I
Sbjct: 531 FATRLMGVKVLVLDEADHLLDMG--FR---RDIERIIAAVPKQRQTFLFSATVPEEVRQI 585
Query: 185 CTSLMLRDPNIINT---GFDRPN-----LYLAASVKQDDIMADLRKLTNFENQFEGSTII 236
C + RD IN G + +Y+ AS+ + + + + + + II
Sbjct: 586 CHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVII 645
Query: 237 YCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGID 296
+C T ++ V D+LS+ + R H+ R + F K ++V + G+D
Sbjct: 646 FCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVD 705
Query: 297 KPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326
PDV V+ G P D Y +GR GR G
Sbjct: 706 YPDVSLVVQMGLPSDREQYIHRLGRTGRKG 735
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 156 (60.0 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 51/216 (23%), Positives = 96/216 (44%)
Query: 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATA-TPVVIDDICTS 187
+ I+ +DE C+ Q G FR + + L P V + + T + V +
Sbjct: 258 LDNIMTFVLDEVDCMLQRG--FRDQVMQIFQA-LSQPQVLLFSATISREVEKVGGSLAKE 314
Query: 188 LML---RDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVIC 244
++L +PN N ++ +++ A K+ + LR +N F+ ++Y ++V
Sbjct: 315 IILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRS----QNHFKPPAVVYVSSRVGA 370
Query: 245 EKVCDVLSR-NGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCV 303
+ + + ++ G++ H +K+R+++ G F+ + V+V+T G G+D VR V
Sbjct: 371 DLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQV 430
Query: 304 IHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I + P + Y IGRA R G F D
Sbjct: 431 IVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDD 466
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 147 (56.8 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 58/246 (23%), Positives = 98/246 (39%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
+ + +DEA + G + R L E+R PD ++A+T+ P + +
Sbjct: 237 VTYVVLDEADRMLDMGFEVAIR-RILFEIR---PD-RLVALTSATWPEGVRKLTDKYTKE 291
Query: 192 DPNIINTGFDRPNLYLAAS----VKQDDIMADLRKLTNFENQFEGST---IIYCPTKVIC 244
+N D + V D + ++ NF G II+ +KV+
Sbjct: 292 AVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMA 351
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
+ + GI ++ H S R+ + ++++VAT GID PD+ V+
Sbjct: 352 DHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVL 411
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMM 364
+Y P D+ Y +GR GR G +F D + + Q L SE QE +
Sbjct: 412 NYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQI-LEKSE-QEVPDQLR 469
Query: 365 KRVEKY 370
+ EKY
Sbjct: 470 RDAEKY 475
Score = 52 (23.4 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 34 RKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTN--NTSFLSRIPRIVLIAI 91
+KY N +K + S+ + C ++V TP +T+ N +S + + + +
Sbjct: 184 KKYSYNGYKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVIS-LASVTYVVL 242
Query: 92 DEAHCVSQWGHDFRPSYRCLSELR 115
DEA + G + R L E+R
Sbjct: 243 DEADRMLDMGFEVAIR-RILFEIR 265
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 152 (58.6 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 66/244 (27%), Positives = 105/244 (43%)
Query: 129 IPRIVLIAIDEAHCVSQWGHDFRPS-YRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187
+ R+ L +DEA + G F+ Y +L +PD+ + +AT +++ T+
Sbjct: 163 VDRLKLFILDEADEMLSRG--FKAQIYEVFKKL---VPDIQVALFSATMPQEILE--LTT 215
Query: 188 LMLRDPNIINTGFDRPNL-----YLAASVKQD---DIMADLRKLTNFENQFEGSTIIYCP 239
+RDP I D L + A K++ D + DL +E +IIYC
Sbjct: 216 RFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDL-----YETLTITQSIIYCN 270
Query: 240 TKVICEKVCDVLSRNGIQNRPY-----HAHISLKQRKEIHGLFVKDLIKVVVATCAFGMG 294
T+ +KV D+L++ + NR + H + K R I F +V+V T G
Sbjct: 271 TR---KKV-DILTQE-MHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARG 325
Query: 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDS 354
ID V VI+Y P Y IGR+GR G V F D K+ + + +
Sbjct: 326 IDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYST 385
Query: 355 EIQE 358
+I+E
Sbjct: 386 QIEE 389
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 152 (58.6 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 66/244 (27%), Positives = 105/244 (43%)
Query: 129 IPRIVLIAIDEAHCVSQWGHDFRPS-YRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187
+ R+ L +DEA + G F+ Y +L +PD+ + +AT +++ T+
Sbjct: 163 VDRLKLFILDEADEMLSRG--FKAQIYEVFKKL---VPDIQVALFSATMPQEILE--LTT 215
Query: 188 LMLRDPNIINTGFDRPNL-----YLAASVKQD---DIMADLRKLTNFENQFEGSTIIYCP 239
+RDP I D L + A K++ D + DL +E +IIYC
Sbjct: 216 RFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDL-----YETLTITQSIIYCN 270
Query: 240 TKVICEKVCDVLSRNGIQNRPY-----HAHISLKQRKEIHGLFVKDLIKVVVATCAFGMG 294
T+ +KV D+L++ + NR + H + K R I F +V+V T G
Sbjct: 271 TR---KKV-DILTQE-MHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARG 325
Query: 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDS 354
ID V VI+Y P Y IGR+GR G V F D K+ + + +
Sbjct: 326 IDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYST 385
Query: 355 EIQE 358
+I+E
Sbjct: 386 QIEE 389
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 154 (59.3 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 57/212 (26%), Positives = 105/212 (49%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I ++ +DEA + + G F+ + L L D + V+AT P I+ + T +L
Sbjct: 347 IKIVVVDEADTMLKMG--FQQ--QVLDVLEHTPGDCQTILVSATI-PDSIEQL-TDQLLH 400
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMAD-------LRKLTNFENQFEGSTIIYCPTKVIC 244
+P I TG D+ NL ASV+Q + + L ++ N + F+ +++ K+
Sbjct: 401 NPVRIITG-DK-NLP-CASVRQIILWVEDPAKKKKLFEILNDQKLFKPPVLVFVDCKLGA 457
Query: 245 EKVCDVLSR-NGIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
+ + + + + G+ + H+ S +R++I GL D +VVV+T G G+D +V+
Sbjct: 458 DLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDY-EVVVSTGVLGRGLDLVNVKL 516
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
V+++ P + Y ++GR GR G + TF
Sbjct: 517 VVNFDMPSSMDEYVHQVGRVGRLGQNGTAITF 548
>UNIPROTKB|E2RDN3 [details] [associations]
symbol:E2RDN3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 PROSITE:PS50158 SMART:SM00343
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 GO:GO:0008026
OMA:DMPEEAI EMBL:AAEX03008976 EMBL:AAEX03008977 EMBL:AAEX03008978
Ensembl:ENSCAFT00000002463 Uniprot:E2RDN3
Length = 1163
Score = 157 (60.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 42/128 (32%), Positives = 64/128 (50%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDI 184
L ++P + IDEAHC+SQW H+FRP Y R LR + L +TATAT D+
Sbjct: 608 LPQLPPVAFACIDEAHCISQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDV 667
Query: 185 CTSLMLRDPNIINTGFDRP-NLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243
L + + ++ P NL+L+ S +D A + L + + S I+YC +
Sbjct: 668 ARHLGVAEELVLRGPATVPSNLHLSVSRDRDPDQALVTLLQSDRFRALSSVIVYCHRRGD 727
Query: 244 CEKVCDVL 251
E+V +L
Sbjct: 728 TERVAALL 735
>UNIPROTKB|B7ZBU3 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
HOVERGEN:HBG015893 EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
IPI:IPI00916009 SMR:B7ZBU3 Ensembl:ENST00000433235
HOGENOM:HOG000200515 Uniprot:B7ZBU3
Length = 224
Score = 143 (55.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 50/178 (28%), Positives = 87/178 (48%)
Query: 166 DVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMAD------ 219
D + V+AT P I+ + + L L +P I TG NL A+V+Q + +
Sbjct: 20 DCQTILVSATI-PTSIEQLASQL-LHNPVRIITG--EKNLP-CANVRQIILWVEDPAKKK 74
Query: 220 -LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR-NGIQNRPYHAHISLKQRKEI-HGL 276
L ++ N + F+ +++ K+ + + + + + G+++ H+ S +RK I GL
Sbjct: 75 KLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGL 134
Query: 277 FVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
D +VVV+T G G+D VR V+++ P + Y +IGR GR G + TF
Sbjct: 135 LEGDY-EVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITF 191
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 57/212 (26%), Positives = 103/212 (48%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
+ ++ +DEA + + G F+ + E +P D + V+AT P I+ + + L L
Sbjct: 347 VKIVVVDEADTMLKMG--FQQQVLDILE-NIP-NDCQTILVSATI-PTSIEQLASQL-LH 400
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMAD-------LRKLTNFENQFEGSTIIYCPTKVIC 244
+P I TG NL A+V+Q + + L ++ N + F+ +++ K+
Sbjct: 401 NPVRIITG--EKNLP-CANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGA 457
Query: 245 EKVCDVLSR-NGIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
+ + + + + G+++ H+ S +RK I GL D +VVV+T G G+D VR
Sbjct: 458 DLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDY-EVVVSTGVLGRGLDLISVRL 516
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
V+++ P + Y +IGR GR G + TF
Sbjct: 517 VVNFDMPSSMDEYVHQIGRVGRLGQNGTAITF 548
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 58/212 (27%), Positives = 103/212 (48%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I ++ +DEA + + G F+ + E +P IL V+AT P I+ + + L L
Sbjct: 348 IKIVVVDEADTMLKMG--FQQQVLDILE-HVPNDSQTIL-VSATI-PTSIEQLASQL-LH 401
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMAD-------LRKLTNFENQFEGSTIIYCPTKVIC 244
+P I TG NL +SV+Q + + L ++ N + F+ +++ K+
Sbjct: 402 NPVRIITG--EKNLP-CSSVRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGA 458
Query: 245 EKVCDVLSR-NGIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
+ + + + + G+++ H+ S +RK I GL D +VVV+T G G+D VR
Sbjct: 459 DLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDY-EVVVSTGVLGRGLDLISVRL 517
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
V+++ P + Y ++GR GR G + TF
Sbjct: 518 VVNFDMPSSMDEYVHQVGRVGRLGQNGTAITF 549
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 146 (56.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 232 GSTIIYCPTKVICEKVCDVLSRNGIQN-RPYHAHISLKQRK-EIHGLFVKDLIKVVVATC 289
G TI++C TK ++ L+ + Q+ + H I KQR+ + G F KV+VAT
Sbjct: 366 GRTIVFCETKKDANELA--LNASIKQDCQSLHGDIPQKQREITLKG-FRNGAFKVLVATN 422
Query: 290 AFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
G+D P+V V+ PKD+ +Y GR GR G + +C FY+
Sbjct: 423 VAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQ 469
Score = 53 (23.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 394 ESQVPPDKCCDNCRHNEMLELEQVPRGG 421
E + K C C NE+ ELE+ RGG
Sbjct: 621 EERWEDSKQCSLCVANELPELEESQRGG 648
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 154 (59.3 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 40/109 (36%), Positives = 57/109 (52%)
Query: 230 FEGSTIIYCPTKVICEKVC-DVLSRNGIQNRPYHAHISLKQRK-EIHGLFVKDLIKVVVA 287
F+G TII+C TK +++ +V R Q+ H I KQR+ + G D V+VA
Sbjct: 438 FQGRTIIFCETKKEAQELSQNVAVRQDAQS--LHGDIPQKQREITLKGFRNGDF-GVLVA 494
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
T G+D P+V V+ PKD+ +Y GR GR G + VC FY+
Sbjct: 495 TNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQ 543
>UNIPROTKB|E1C6M6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00680000100003
EMBL:AADN02028008 IPI:IPI00822651 ProteinModelPortal:E1C6M6
Ensembl:ENSGALT00000040808 OMA:DWLENEA ArrayExpress:E1C6M6
Uniprot:E1C6M6
Length = 294
Score = 146 (56.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 39/116 (33%), Positives = 56/116 (48%)
Query: 232 GSTIIYCPTKVICEKVCDVLSRNGI---QNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT 288
G TI++C TK K + L+ N + + H I KQR+ F + +V++AT
Sbjct: 96 GRTIVFCETK----KEANELALNSALKQEAQSLHGDIPQKQREVTLKGFRNGVFEVLIAT 151
Query: 289 CAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY--KTADFTK 342
G+D P+V VI PKD+ +Y GR GR G + +C FY K D K
Sbjct: 152 NVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICFYQRKEEDLLK 207
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 152 (58.6 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 63/225 (28%), Positives = 96/225 (42%)
Query: 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRCL-SELRLP-LPDVPILAVTATATPVVIDDICT 186
+ I + +DEA + G F P R + E +P + D L +AT P I +
Sbjct: 341 LANIRYLVLDEADRMLDMG--FEPQIRYIVEECDMPAVKDRQTLMFSATF-PRDIQMLAR 397
Query: 187 SLMLRDPNIINTG---FDRPNLYLAASVKQDD----IMADLRKLTNFENQFEGSTIIYCP 239
L+D ++ G N+ +DD ++ DL L+ EN G TI++
Sbjct: 398 DF-LKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILDL--LSANEN---GLTIVFTE 451
Query: 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
TK + + + D L G H S +R++ F ++VAT G+D P+
Sbjct: 452 TKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPN 511
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNN 344
V VI+Y P D+ Y IGR GR G + TA F +NN
Sbjct: 512 VSHVINYDLPSDIDDYVHRIGRTGRAGNVGIA-----TAFFNRNN 551
>TAIR|locus:2101993 [details] [associations]
symbol:LOS4 "LOW EXPRESSION OF OSMOTICALLY RESPONSIVE
GENES 4" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=IMP]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0009408 "response to heat"
evidence=IMP] [GO:0009737 "response to abscisic acid stimulus"
evidence=IMP] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0010286 "heat acclimation" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0009737 GO:GO:0005737 GO:GO:0005635 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 GO:GO:0009408 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 EMBL:AL132958 eggNOG:COG0513 HOGENOM:HOG000268797
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GO:GO:0016973 EMBL:AY057548 EMBL:BT002444 EMBL:BT008867
IPI:IPI00533725 PIR:T46157 RefSeq:NP_190879.1 UniGene:At.35224
UniGene:At.675 ProteinModelPortal:Q93ZG7 SMR:Q93ZG7 PaxDb:Q93ZG7
PRIDE:Q93ZG7 EnsemblPlants:AT3G53110.1 GeneID:824477
KEGG:ath:AT3G53110 GeneFarm:1014 TAIR:At3g53110 InParanoid:Q93ZG7
OMA:ESATTFE PhylomeDB:Q93ZG7 ProtClustDB:CLSN2684906
Genevestigator:Q93ZG7 GermOnline:AT3G53110 Uniprot:Q93ZG7
Length = 496
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 58/209 (27%), Positives = 96/209 (45%)
Query: 134 LIAIDEA-HCVSQWGHDFRP-SYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
++ DEA H ++ G FR S + + ++ P+ +L +AT V D + ++ +
Sbjct: 241 ILVFDEADHMLATDG--FRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTV--K 296
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMA--DLRKLTNFENQFE-----GSTIIYCPTKVIC 244
DPN + R +L L SVKQ ++ + K+ ++Q G TII+ TK
Sbjct: 297 DPNQLFV--KREDLALD-SVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASA 353
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
+KV L+ G H +++ R +I F + L +V++AT G D+ V V+
Sbjct: 354 QKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVV 413
Query: 305 HYGAPK-------DLSAYYQEIGRAGRDG 326
+Y P D Y +GRAGR G
Sbjct: 414 NYNLPTKYETGEPDYEVYLHRVGRAGRFG 442
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 151 (58.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 55/210 (26%), Positives = 101/210 (48%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I ++ +DEA + + G F+ + E +LP +LA +AT P ++ + L LR
Sbjct: 348 IKIVVVDEADTMLKMG--FQQQVLDVLE-QLPHDCQTVLA-SATI-PASVEQLACQL-LR 401
Query: 192 DPNIINTGFDR----PNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEK 246
DP I G +R P++ + V++ L ++ N + F+ +++ K+ +
Sbjct: 402 DPVAITAG-ERNLPCPSVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADL 460
Query: 247 VCDVLSR-NGIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
+ + + + G+++ H+ + +RK I GL D VVV+T G G+D V+ V+
Sbjct: 461 LSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDY-DVVVSTGVLGRGLDLVGVKLVV 519
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
++ P + Y +IGR GR G TF
Sbjct: 520 NFDMPSSMDEYVHQIGRVGRLGQHGTAITF 549
>UNIPROTKB|E2QTL6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
NextBio:20852481 Uniprot:E2QTL6
Length = 785
Score = 152 (58.6 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 40/109 (36%), Positives = 56/109 (51%)
Query: 230 FEGSTIIYCPTKVICEKVCDVLS-RNGIQNRPYHAHISLKQRK-EIHGLFVKDLIKVVVA 287
F G TII+C TK +++ +S R Q+ H I KQR+ + G D V+VA
Sbjct: 439 FHGRTIIFCETKKEAQELSQNVSIRQDAQS--LHGDIPQKQREITLKGFRNGDF-GVLVA 495
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
T G+D P+V VI PKD+ +Y GR GR G + +C FY+
Sbjct: 496 TNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQ 544
>UNIPROTKB|F6V8G4 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
Length = 786
Score = 152 (58.6 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 40/109 (36%), Positives = 56/109 (51%)
Query: 230 FEGSTIIYCPTKVICEKVCDVLS-RNGIQNRPYHAHISLKQRK-EIHGLFVKDLIKVVVA 287
F G TII+C TK +++ +S R Q+ H I KQR+ + G D V+VA
Sbjct: 439 FHGRTIIFCETKKEAQELSQNVSIRQDAQS--LHGDIPQKQREITLKGFRNGDF-GVLVA 495
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
T G+D P+V VI PKD+ +Y GR GR G + +C FY+
Sbjct: 496 TNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQ 544
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 150 (57.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 58/220 (26%), Positives = 95/220 (43%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R+ + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 270 TNLKRVTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVQQL- 322
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ-----DDIMADLRKLTNFE---NQFEGSTI 235
T L DP + G +L LAAS + Q D+ R + + E N+ + +
Sbjct: 323 TRDYLNDPIQVTIG----SLELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKIL 378
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
++ TK C+++ L +G H +R + F K ++VAT GI
Sbjct: 379 VFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGI 438
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D + VI+Y P ++ Y IGR GR G S +F+
Sbjct: 439 DVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFF 478
>RGD|1310934 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005886
"plasma membrane" evidence=ISO] InterPro:IPR001650
InterPro:IPR012562 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 RGD:1310934 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
GO:GO:0004386 eggNOG:COG0513 EMBL:BC091427 IPI:IPI00764536
UniGene:Rn.98470 SMR:Q5BJM0 Ensembl:ENSRNOT00000057582
UCSC:RGD:1310934 HOGENOM:HOG000137600 NextBio:677841
Genevestigator:Q5BJM0 Uniprot:Q5BJM0
Length = 380
Score = 147 (56.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 44/136 (32%), Positives = 65/136 (47%)
Query: 204 NLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGI-QNRP-Y 261
NL+LA A + + + EG II+C TK + V ++ I QN
Sbjct: 5 NLHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETK---KNVTEMAMNPHIKQNAQCL 61
Query: 262 HAHISLKQRK-EIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIG 320
H I+ QR+ + G F + KV+VAT G+D P+V VI P+D+ +Y G
Sbjct: 62 HGDIAQSQREITLKG-FREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSG 120
Query: 321 RAGRDGLSSVCYTFYK 336
R GR G + +C FY+
Sbjct: 121 RTGRAGRTGICVCFYQ 136
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 150 (57.9 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 57/217 (26%), Positives = 93/217 (42%)
Query: 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVP---ILAVTATATPVVIDDIC 185
+ I + +DEA + G F P R + E +P V L +AT PV I +
Sbjct: 309 LANIKYLVLDEADRMLDMG--FEPQIRHIVE-ECDMPSVENRQTLMFSATF-PVDIQHLA 364
Query: 186 TSLMLRDPNII----NTGFDRPNLYLAASVKQD-DIMADLRKLTNFENQFEGSTIIYCPT 240
+ D I G N+ D D + L L + E++ G T+I+ T
Sbjct: 365 RDFL--DNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHK--GLTLIFVET 420
Query: 241 KVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDV 300
K + +++ D L + H + +R+ F ++ ++VAT G+D P+V
Sbjct: 421 KRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNV 480
Query: 301 RCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKT 337
VI+Y P D+ Y IGR GR G + V +F+ +
Sbjct: 481 THVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNS 517
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 149 (57.5 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 65/255 (25%), Positives = 108/255 (42%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 225 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 278
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD--LRKLTNFENQFEGSTIIYCP 239
L++ IN G N+ V D D +R + ++ E TI++
Sbjct: 279 EDF-LKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVE 337
Query: 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
TK C+ + + R+G H S ++R + F +++AT G+D D
Sbjct: 338 TKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVED 397
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEH 359
V+ VI+Y P Y IGR R + YTF FT NN I Q N S ++E
Sbjct: 398 VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNN-IKQVNDLISVLREA 451
Query: 360 SKTMMKRVEKYLELR 374
++ + ++ + +E R
Sbjct: 452 NQAINPKLLQLIEDR 466
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 149 (57.5 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 65/255 (25%), Positives = 108/255 (42%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 233 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 286
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD--LRKLTNFENQFEGSTIIYCP 239
L++ IN G N+ V D D +R + ++ E TI++
Sbjct: 287 EDF-LKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVE 345
Query: 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
TK C+ + + R+G H S ++R + F +++AT G+D D
Sbjct: 346 TKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVED 405
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEH 359
V+ VI+Y P Y IGR R + YTF FT NN I Q N S ++E
Sbjct: 406 VKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNN-IKQVNDLISVLREA 459
Query: 360 SKTMMKRVEKYLELR 374
++ + ++ + +E R
Sbjct: 460 NQAINPKLLQLIEDR 474
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 149 (57.5 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 64/270 (23%), Positives = 117/270 (43%)
Query: 118 LPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATA 176
L D+ + + I + +DEA + G F P + L ++R PD + +AT
Sbjct: 376 LNDLQMSNFVNLKNITYLVLDEADKMLDMG--FEPQIMKILLDVR---PDRQTVMTSAT- 429
Query: 177 TPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMA-DLRKLTNFEN--QFEGS 233
P + + S L++P I+ G +L +SVKQ+ I+ + K ++ + Q S
Sbjct: 430 WPHSVHRLAQSY-LKEPMIVYVG--TLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSS 486
Query: 234 T---IIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290
T I++ K + + + L I H + R++ F +++++AT
Sbjct: 487 TDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDL 546
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF-TKNNMIFQP 349
G+D DV V ++ P+++ Y IGR GR G + V T D+ + +I
Sbjct: 547 ASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINIL 606
Query: 350 NLNDSEIQEHSKTMMKRVEKYLELRTCRRK 379
+ I E +M +R + + + R RK
Sbjct: 607 ERANQSIPEELVSMAERFKAHQQKREMERK 636
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 147 (56.8 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 40/117 (34%), Positives = 55/117 (47%)
Query: 232 GSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAF 291
G+T+I+ TK +KV D L+ G H + R++ F I V+VAT
Sbjct: 271 GATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVA 330
Query: 292 GMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQ 348
GID DV VI+Y P+D Y IGR GR G + V T + + +MI Q
Sbjct: 331 ARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELPRWSMIDQ 387
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 147 (56.8 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 59/227 (25%), Positives = 95/227 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 158 TNLRRTTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 211
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD---LRKLTNFENQFEGSTIIYC 238
L+D IN G N+ V D + D +R + ++ E TI++
Sbjct: 212 EDF-LKDYIHINIGALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFV 269
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
TK C+++ + R+G H S ++R + F +++AT G+D
Sbjct: 270 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 329
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
DV+ VI+Y P Y IGR R + YTF FT NN+
Sbjct: 330 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNNI 371
>UNIPROTKB|Q4K580 [details] [associations]
symbol:lhr "Putative ATP-dependent helicase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR005471 InterPro:IPR011545 InterPro:IPR013701
Pfam:PF00270 Pfam:PF00271 Pfam:PF08494 Pfam:PF09339 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0006139 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000076
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1201 HOGENOM:HOG000238716 KO:K03724 RefSeq:YP_262603.2
GeneID:3479923 KEGG:pfl:PFL_5535 PATRIC:19880561
ProtClustDB:CLSK838736 BioCyc:PFLU220664:GIX8-5572-MONOMER
Uniprot:Q4K580
Length = 1428
Score = 152 (58.6 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 59/202 (29%), Positives = 100/202 (49%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSELRLP-LPDVPILAVTATATPVVIDDICTSLML--R 191
+ IDE H ++ G R S+ LS RL L P+L + +AT I+ + L+ R
Sbjct: 174 VIIDEIHALA--GSK-RGSHLALSLERLQALCAAPLLRIGLSATQKPIEAVSRFLVGHGR 230
Query: 192 DPNIINTGFDRP-NLYLAAS-VKQDDIMAD------LRKLTNFENQFEGSTIIYCPTKVI 243
I++ G RP +L + V +MA+ +L N + +T+I+ T+ +
Sbjct: 231 PCEIVDIGHARPRDLDIEVPPVPLSAVMANDVWELVYERLANLAREHR-TTLIFVNTRRL 289
Query: 244 CEKVCDVLS-RNGIQN-RPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVR 301
E++ LS R G Q +H ++ +QR E ++V++AT + +GID DV
Sbjct: 290 AERLARHLSERLGKQAVAAHHGSLAKEQRLEAEQRLKAGDLQVLIATASLELGIDIGDVD 349
Query: 302 CVIHYGAPKDLSAYYQEIGRAG 323
V G+P+ +SA+ Q +GR+G
Sbjct: 350 LVCQIGSPRSISAFLQRVGRSG 371
>RGD|1359520 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1359520 GO:GO:0005524
GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 147 (56.8 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 51/178 (28%), Positives = 89/178 (50%)
Query: 166 DVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMAD------ 219
D + V+AT P ID + L L +P I TG D+ NL +SV+Q + +
Sbjct: 347 DCQTVLVSATI-PDSIDQLADQL-LHNPVRIVTG-DK-NLP-CSSVRQIILWVEDPAKKK 401
Query: 220 -LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR-NGIQNRPYHAHISLKQRKEI-HGL 276
L ++ N + F+ +++ K+ + + + + + G+ + H+ S +R+EI GL
Sbjct: 402 KLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGL 461
Query: 277 FVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
D +VVV+T G G+D +V+ V+++ P L Y ++GR GR G + TF
Sbjct: 462 LEGDY-EVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITF 518
>UNIPROTKB|Q66HG7 [details] [associations]
symbol:Ddx59 "Probable ATP-dependent RNA helicase DDX59"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1359520
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 147 (56.8 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 51/178 (28%), Positives = 89/178 (50%)
Query: 166 DVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMAD------ 219
D + V+AT P ID + L L +P I TG D+ NL +SV+Q + +
Sbjct: 347 DCQTVLVSATI-PDSIDQLADQL-LHNPVRIVTG-DK-NLP-CSSVRQIILWVEDPAKKK 401
Query: 220 -LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSR-NGIQNRPYHAHISLKQRKEI-HGL 276
L ++ N + F+ +++ K+ + + + + + G+ + H+ S +R+EI GL
Sbjct: 402 KLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGL 461
Query: 277 FVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
D +VVV+T G G+D +V+ V+++ P L Y ++GR GR G + TF
Sbjct: 462 LEGDY-EVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITF 518
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 147 (56.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 59/227 (25%), Positives = 95/227 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 237 TNLRRTTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 290
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD---LRKLTNFENQFEGSTIIYC 238
L+D IN G N+ V D + D +R + ++ E TI++
Sbjct: 291 EDF-LKDYIHINIGALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFV 348
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
TK C+++ + R+G H S ++R + F +++AT G+D
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
DV+ VI+Y P Y IGR R + YTF FT NN+
Sbjct: 409 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNNI 450
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 147 (56.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 59/227 (25%), Positives = 95/227 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 237 TNLRRTTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 290
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD---LRKLTNFENQFEGSTIIYC 238
L+D IN G N+ V D + D +R + ++ E TI++
Sbjct: 291 EDF-LKDYIHINIGALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFV 348
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
TK C+++ + R+G H S ++R + F +++AT G+D
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
DV+ VI+Y P Y IGR R + YTF FT NN+
Sbjct: 409 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNNI 450
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 147 (56.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 59/227 (25%), Positives = 95/227 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 237 TNLRRTTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 290
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD---LRKLTNFENQFEGSTIIYC 238
L+D IN G N+ V D + D +R + ++ E TI++
Sbjct: 291 EDF-LKDYIHINIGALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFV 348
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
TK C+++ + R+G H S ++R + F +++AT G+D
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
DV+ VI+Y P Y IGR R + YTF FT NN+
Sbjct: 409 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNNI 450
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 147 (56.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 59/227 (25%), Positives = 95/227 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 237 TNLRRTTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 290
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD---LRKLTNFENQFEGSTIIYC 238
L+D IN G N+ V D + D +R + ++ E TI++
Sbjct: 291 EDF-LKDYIHINIGALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFV 348
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
TK C+++ + R+G H S ++R + F +++AT G+D
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
DV+ VI+Y P Y IGR R + YTF FT NN+
Sbjct: 409 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNNI 450
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 147 (56.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 59/227 (25%), Positives = 95/227 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 237 TNLRRTTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 290
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD---LRKLTNFENQFEGSTIIYC 238
L+D IN G N+ V D + D +R + ++ E TI++
Sbjct: 291 EDF-LKDYIHINIGALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFV 348
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
TK C+++ + R+G H S ++R + F +++AT G+D
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
DV+ VI+Y P Y IGR R + YTF FT NN+
Sbjct: 409 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNNI 450
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 147 (56.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 59/227 (25%), Positives = 95/227 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 237 TNLRRTTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 290
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD---LRKLTNFENQFEGSTIIYC 238
L+D IN G N+ V D + D +R + ++ E TI++
Sbjct: 291 EDF-LKDYIHINIGALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFV 348
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
TK C+++ + R+G H S ++R + F +++AT G+D
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
DV+ VI+Y P Y IGR R + YTF FT NN+
Sbjct: 409 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNNI 450
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 147 (56.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 59/227 (25%), Positives = 95/227 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 237 TNLRRTTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 290
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD---LRKLTNFENQFEGSTIIYC 238
L+D IN G N+ V D + D +R + ++ E TI++
Sbjct: 291 EDF-LKDYIHINIGALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFV 348
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
TK C+++ + R+G H S ++R + F +++AT G+D
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
DV+ VI+Y P Y IGR R + YTF FT NN+
Sbjct: 409 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNNI 450
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 146 (56.5 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 55/220 (25%), Positives = 94/220 (42%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R+ + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 256 TNLKRVTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVKQLA 309
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQD-DIMADLRKLTNFENQFEGS-------TI 235
L DP + G +L L+AS + Q ++++D K E + T+
Sbjct: 310 ADY-LNDPIQVQVG----SLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTL 364
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
I+ TK +C+ + L +G H ++R + F ++VAT GI
Sbjct: 365 IFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGI 424
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D + VI+Y P ++ Y IGR GR G + +F+
Sbjct: 425 DVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFF 464
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 148 (57.2 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 42/110 (38%), Positives = 56/110 (50%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGI--QN-RPYHAHISLKQRK-EIHGLFVKDLIKVVV 286
+G TII+C TK K LS+N Q+ + H I KQR+ + G F V+V
Sbjct: 438 QGRTIIFCETK----KEAQELSQNSAIKQDAQSLHGDIPQKQREITLKG-FRNGSFGVLV 492
Query: 287 ATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
AT G+D P+V VI PKD+ +Y GR GR G + VC FY+
Sbjct: 493 ATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQ 542
>UNIPROTKB|F1LX16 [details] [associations]
symbol:F1LX16 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
Length = 659
Score = 147 (56.8 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 42/110 (38%), Positives = 57/110 (51%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGI--QN-RPYHAHISLKQRK-EIHGLFVKDLIKVVV 286
+G TII+C TK K LS+N Q+ + H I KQR+ + G F D V+V
Sbjct: 318 QGRTIIFCETK----KDAQELSQNTCIKQDAQSLHGDIPQKQREITLKG-FRNDNFGVLV 372
Query: 287 ATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
AT G+D P+V V+ PKD+ +Y GR GR G + VC FY+
Sbjct: 373 ATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQ 422
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 143 (55.4 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 53/214 (24%), Positives = 89/214 (41%)
Query: 125 FLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDD- 183
F +R+ + ++ +DEA + G FR E+ + VP T + V D+
Sbjct: 229 FATRLMGVKVLVLDEADHLLDMG--FR------REIERIIAAVPKQRQTFLFSATVSDEV 280
Query: 184 --ICTSLMLRDPNIINT---GFDRPN-----LYLAASVKQD-DIMADLRKLTNFENQFEG 232
IC + RD +N G + +Y+ AS+ + ++ L K + +
Sbjct: 281 RQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLK-KHITDNVGY 339
Query: 233 STIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG 292
II+C T ++ V D+L + + R H+ R + F K ++V +
Sbjct: 340 KVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSA 399
Query: 293 MGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326
G+D PDV V+ G P D Y +GR GR G
Sbjct: 400 RGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKG 433
Score = 47 (21.6 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 64 QVVYMTP----EYVTNNTSFLSRIPRIVLIAIDEA 94
Q++ TP +++ N + F +R+ + ++ +DEA
Sbjct: 210 QILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEA 244
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 147 (56.8 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 59/227 (25%), Positives = 95/227 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 294 TNLRRTTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 347
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD---LRKLTNFENQFEGSTIIYC 238
L+D IN G N+ V D + D +R + ++ E TI++
Sbjct: 348 EDF-LKDYIHINIGALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFV 405
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
TK C+++ + R+G H S ++R + F +++AT G+D
Sbjct: 406 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVE 465
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
DV+ VI+Y P Y IGR R + YTF FT NN+
Sbjct: 466 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNNI 507
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 146 (56.5 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 52/209 (24%), Positives = 99/209 (47%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I ++ +DEA + + G F+ + E +P D + V+AT P I+ + + L L
Sbjct: 335 IKIVVVDEADTMLKMG--FQEQVLDVLE-NVP-QDCQTILVSATI-PTRIEQLASRL-LH 388
Query: 192 DPNIINTGFDR---PNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKV 247
DP + G P++ + V++ L ++ N + F+ +++ K+ + +
Sbjct: 389 DPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLL 448
Query: 248 CDVLSR-NGIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
+ + + G+++ H+ S +RK I GL D VVV+T G G+D V+ V++
Sbjct: 449 SEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDY-DVVVSTGVLGRGLDLISVKLVVN 507
Query: 306 YGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
+ P + Y ++GR GR G + TF
Sbjct: 508 FDMPSSMDEYVHQVGRVGRLGQNGTAITF 536
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 146 (56.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 59/227 (25%), Positives = 95/227 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 237 TNLRRTTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 290
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD---LRKLTNFENQFEGSTIIYC 238
L+D IN G N+ V D + D +R + ++ E TI++
Sbjct: 291 EDF-LKDYIHINIGALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFV 348
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
TK C+++ + R+G H S ++R + F +++AT G+D
Sbjct: 349 ETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVE 408
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
DV+ VI+Y P Y IGR R + YTF FT NN+
Sbjct: 409 DVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF-----FTPNNI 450
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 146 (56.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 59/226 (26%), Positives = 94/226 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 239 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 292
Query: 186 TSLMLRDPNIINTGF----DRPNLYLAASVKQDDIMAD--LRKLTNFENQFEGSTIIYCP 239
L++ IN G N+ V D D +R L ++ E TII+
Sbjct: 293 EDF-LKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVE 351
Query: 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
TK C+ + + R+G H + ++R + F +++AT G+D D
Sbjct: 352 TKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVED 411
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
V+ VI++ P + Y IGR R + YTF FT NNM
Sbjct: 412 VKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTF-----FTPNNM 452
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 144 (55.7 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 61/230 (26%), Positives = 96/230 (41%)
Query: 134 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
++ +DEA + + G F+P + E + P +L +AT P I I +M +P
Sbjct: 147 MLVLDEADRMLEMG--FQPQLDAIIE-QSPRERQTLL-FSATF-PEQIQSIAKQIMY-NP 200
Query: 194 NIINTGFDRPNLYLAASVKQ-DDIMADLR--KLTNFENQFEGSTIIYCPTKVICEKVCDV 250
++ + Q DD + ++ +L E++ E S +++C TK +KV D
Sbjct: 201 VMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPE-SAVVFCNTKRETQKVADE 259
Query: 251 LSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK 310
L G H + + R E F V+VAT G+D + V +Y
Sbjct: 260 LEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAY 319
Query: 311 DLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHS 360
D + IGR GR G YTFY D K ++ + L D EI S
Sbjct: 320 DTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALL-EEYL-DREITSES 367
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 144 (55.7 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 61/230 (26%), Positives = 96/230 (41%)
Query: 134 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
++ +DEA + + G F+P + E + P +L +AT P I I +M +P
Sbjct: 147 MLVLDEADRMLEMG--FQPQLDAIIE-QSPRERQTLL-FSATF-PEQIQSIAKQIMY-NP 200
Query: 194 NIINTGFDRPNLYLAASVKQ-DDIMADLR--KLTNFENQFEGSTIIYCPTKVICEKVCDV 250
++ + Q DD + ++ +L E++ E S +++C TK +KV D
Sbjct: 201 VMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPE-SAVVFCNTKRETQKVADE 259
Query: 251 LSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK 310
L G H + + R E F V+VAT G+D + V +Y
Sbjct: 260 LEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAY 319
Query: 311 DLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHS 360
D + IGR GR G YTFY D K ++ + L D EI S
Sbjct: 320 DTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALL-EEYL-DREITSES 367
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 143 (55.4 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 56/218 (25%), Positives = 91/218 (41%)
Query: 128 RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187
R I L+ +DEA + G F+ + LP P ++ ++AT +++ TS
Sbjct: 165 RTRAIKLLVLDEADEMLNKG--FKEQLYDIYRY-LP-PGAQVVLLSATLPHEILE--MTS 218
Query: 188 LMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR--KLTNFENQFEGSTI----IYCPTK 241
+ DP I R L L +KQ + D K + ++ TI ++C T+
Sbjct: 219 KFMTDP--IRILVKRDELTLEG-IKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTR 275
Query: 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVR 301
+ + D + H + K R E+ F +V+++T + G+D P V
Sbjct: 276 RKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVS 335
Query: 302 CVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
VI+Y P + Y IGR+GR G V F K D
Sbjct: 336 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDD 373
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 143 (55.4 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 56/218 (25%), Positives = 91/218 (41%)
Query: 128 RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187
R I L+ +DEA + G F+ + LP P ++ ++AT +++ TS
Sbjct: 165 RTRAIKLLVLDEADEMLNKG--FKEQLYDIYRY-LP-PGAQVVLLSATLPHEILE--MTS 218
Query: 188 LMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR--KLTNFENQFEGSTI----IYCPTK 241
+ DP I R L L +KQ + D K + ++ TI ++C T+
Sbjct: 219 KFMTDP--IRILVKRDELTLEG-IKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTR 275
Query: 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVR 301
+ + D + H + K R E+ F +V+++T + G+D P V
Sbjct: 276 RKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVS 335
Query: 302 CVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
VI+Y P + Y IGR+GR G V F K D
Sbjct: 336 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDD 373
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 147 (56.8 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 52/174 (29%), Positives = 81/174 (46%)
Query: 230 FEGSTIIYCPTKVICEKVCDVLSRNGI--QN-RPYHAHISLKQRK-EIHGLFVKDLIKVV 285
++G TII+C TK K LS+N Q+ + H I KQR+ + G D V+
Sbjct: 509 YQGRTIIFCETK----KEAQELSQNAAVRQDAQSLHGDIPQKQREITLKGFRNGDF-GVL 563
Query: 286 VATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
VAT G+D P+V V+ PKD+ +Y GR GR G + +C FY+ + + +
Sbjct: 564 VATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQHKEEYQLTL 623
Query: 346 IFQP-NLNDSEIQEHSKT-MMKRVEK-YLELRTCRRKYLLNHFKGSSVTVAESQ 396
+ Q + I S T ++K K + L + HFK S+ + E +
Sbjct: 624 VEQKAGIKFKRIGVPSPTEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEK 677
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 146 (56.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 52/227 (22%), Positives = 97/227 (42%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
+ + + IDEA + G + + + ++++ + +L +TAT P + +
Sbjct: 501 KCIYVVIDEADRLLDMGFE-KQLRKIMTQVN---KNKQLLFLTAT-WPEQVRKLAYDFCS 555
Query: 191 RDPNIINTGFDRPNLYLAASVKQDDIMA---DLRK-LTNF--ENQFEGSTIIYCPTKVIC 244
DP I G + L +++Q+ I++ D++K L ++ EN +I+C TK C
Sbjct: 556 YDPVKIQIG--KNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILIFCDTKRNC 613
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
+ +C L + H ++R I + D ++VAT G+D ++ VI
Sbjct: 614 DNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKNISVVI 673
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNL 351
+Y P + Y IGR GR G F+ + + F L
Sbjct: 674 NYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKEL 720
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 43/138 (31%), Positives = 64/138 (46%)
Query: 235 IIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMG 294
+I+C TKV K+ D L G H I +R+ + F + I+ ++AT G
Sbjct: 248 VIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLN-- 352
+D V V +Y P+D+ +Y IGR GR G S + TF D K+ + L
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD-EKHLEEIEKTLGAP 366
Query: 353 -DSEIQEHSKTMMKRVEK 369
EI E K +KRV++
Sbjct: 367 IQREIIEQPK--IKRVDE 382
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 43/138 (31%), Positives = 64/138 (46%)
Query: 235 IIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMG 294
+I+C TKV K+ D L G H I +R+ + F + I+ ++AT G
Sbjct: 248 VIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLN-- 352
+D V V +Y P+D+ +Y IGR GR G S + TF D K+ + L
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD-EKHLEEIEKTLGAP 366
Query: 353 -DSEIQEHSKTMMKRVEK 369
EI E K +KRV++
Sbjct: 367 IQREIIEQPK--IKRVDE 382
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 146 (56.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 35/119 (29%), Positives = 56/119 (47%)
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+L F + GS +++ K E++ + L + G H + +R ++ F K
Sbjct: 490 RRLVEFTSS--GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKK 547
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I V+VAT G+D P ++ VI+Y +D+ + IGR GR G V YT D
Sbjct: 548 DIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 146 (56.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 35/119 (29%), Positives = 56/119 (47%)
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+L F + GS +++ K E++ + L + G H + +R ++ F K
Sbjct: 490 RRLVEFTSS--GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKK 547
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I V+VAT G+D P ++ VI+Y +D+ + IGR GR G V YT D
Sbjct: 548 DIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 146 (56.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 35/119 (29%), Positives = 56/119 (47%)
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+L F + GS +++ K E++ + L + G H + +R ++ F K
Sbjct: 490 RRLVEFTSS--GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKK 547
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I V+VAT G+D P ++ VI+Y +D+ + IGR GR G V YT D
Sbjct: 548 DIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 146 (56.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 35/119 (29%), Positives = 56/119 (47%)
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+L F + GS +++ K E++ + L + G H + +R ++ F K
Sbjct: 490 RRLVEFTSS--GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKK 547
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I V+VAT G+D P ++ VI+Y +D+ + IGR GR G V YT D
Sbjct: 548 DIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 146 (56.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 35/119 (29%), Positives = 56/119 (47%)
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+L F + GS +++ K E++ + L + G H + +R ++ F K
Sbjct: 489 RRLVEFTSS--GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKK 546
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I V+VAT G+D P ++ VI+Y +D+ + IGR GR G V YT D
Sbjct: 547 DIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 605
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 60/245 (24%), Positives = 104/245 (42%)
Query: 101 GHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSEL 160
GH+ RC+S ++L L + R I ++ +DEA + G F+ +
Sbjct: 156 GHEVA---RCISGIQLQLLYMIRRRSLRTRAIKMLVLDEADEMLNKG--FKEQIYDVYRY 210
Query: 161 RLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADL 220
LP P ++ ++AT +++ T+ + DP I R L L +KQ + +
Sbjct: 211 -LP-PATQVVLISATLPHEILE--MTNKFMTDP--IRILVKRDELTLEG-IKQFFVAVER 263
Query: 221 R--KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIH 274
K + ++ TI I+C TK + + + + H + K+R+ I
Sbjct: 264 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIM 323
Query: 275 GLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
F +V+++T + G+D P V +I+Y P + Y IGR+GR G V F
Sbjct: 324 KEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 383
Query: 335 YKTAD 339
K D
Sbjct: 384 VKNDD 388
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 143 (55.4 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 59/219 (26%), Positives = 97/219 (44%)
Query: 135 IAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
+ +DEA + G F P + + ++R PD L +AT P + + + +D
Sbjct: 280 LVLDEADRMLDMG--FEPQIKKIIGQIR---PDRQTLMFSAT-WPKEVRALASDFQ-KDA 332
Query: 194 NIINTGFDRPNLYLAAS--VKQD-DIM------ADLRKLTN-FENQFEGSTIIYCPTKVI 243
+N G +L LAA+ + Q DI+ A L +L N NQ E TII+ TK
Sbjct: 333 AFLNVG----SLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRK 388
Query: 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCV 303
+++ + R+G H + +R + F +++AT G+D D++ V
Sbjct: 389 ADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFV 448
Query: 304 IHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTK 342
I+Y P + Y IGR GR YTF+ + +K
Sbjct: 449 INYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASK 487
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 145 (56.1 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+L F + GS +++ K E++ L + G H + +R ++ F K
Sbjct: 490 RRLVEFTSS--GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKK 547
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I V+VAT G+D P ++ VI+Y +D+ + IGR GR G V YT D
Sbjct: 548 DIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGI-QNRP-YHAHISLKQRK-EIHGLFVKDLIKVVVA 287
EG II+C TK + V ++ I QN H I+ QR+ + G F + KV+VA
Sbjct: 391 EGRAIIFCETK---KNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKG-FREGSFKVLVA 446
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
T G+D P+V VI P+D+ +Y GR GR G + +C FY+
Sbjct: 447 TNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQ 495
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 143 (55.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGI-QNRP-YHAHISLKQRK-EIHGLFVKDLIKVVVA 287
EG II+C TK + V ++ I QN H I+ QR+ + G F + KV+VA
Sbjct: 386 EGRAIIFCETK---KNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKG-FREGSFKVLVA 441
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
T G+D P+V VI P+D+ +Y GR GR G + +C FY+
Sbjct: 442 TNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQ 490
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 143 (55.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGI-QNRP-YHAHISLKQRK-EIHGLFVKDLIKVVVA 287
EG II+C TK + V ++ I QN H I+ QR+ + G F + KV+VA
Sbjct: 389 EGRAIIFCETK---KNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKG-FREGSFKVLVA 444
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
T G+D P+V VI P+D+ +Y GR GR G + +C FY+
Sbjct: 445 TNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQ 493
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 143 (55.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGI-QNRP-YHAHISLKQRK-EIHGLFVKDLIKVVVA 287
EG II+C TK + V ++ I QN H I+ QR+ + G F + KV+VA
Sbjct: 389 EGRAIIFCETK---KNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKG-FREGSFKVLVA 444
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
T G+D P+V VI P+D+ +Y GR GR G + +C FY+
Sbjct: 445 TNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQ 493
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 143 (55.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGI-QNRP-YHAHISLKQRK-EIHGLFVKDLIKVVVA 287
EG II+C TK + V ++ I QN H I+ QR+ + G F + KV+VA
Sbjct: 389 EGRAIIFCETK---KNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKG-FREGSFKVLVA 444
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
T G+D P+V VI P+D+ +Y GR GR G + +C FY+
Sbjct: 445 TNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQ 493
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 143 (55.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 39/109 (35%), Positives = 56/109 (51%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGI-QNRP-YHAHISLKQRK-EIHGLFVKDLIKVVVA 287
EG II+C TK + V ++ I QN H I+ QR+ + G F + KV+VA
Sbjct: 390 EGRAIIFCETK---KNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKG-FREGSFKVLVA 445
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
T G+D P+V VI P+D+ +Y GR GR G + +C FY+
Sbjct: 446 TNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQ 494
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 139 (54.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 55/217 (25%), Positives = 94/217 (43%)
Query: 128 RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187
R I L +DEA + G F+ + + ++ LP PDV ++ ++AT P V++ +
Sbjct: 169 RTQYIKLFVLDEADEMLSRG--FKDQIQDVFKM-LP-PDVQVILLSATMPPDVLE--VSR 222
Query: 188 LMLRDPNIINTGFDRPNL----YLAASVKQDDI-MADLRKLTNFENQFEGSTIIYCPTKV 242
+RDP I + L +VKQ++ + L L ++ ++I+C T+
Sbjct: 223 CFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL--YDTLSITQSVIFCNTRR 280
Query: 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
+++ +S + H + + R+ I F +V++ T GID V
Sbjct: 281 KVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSL 340
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
VI+Y P + Y IGR GR G V F D
Sbjct: 341 VINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDD 377
>WB|WBGene00001840 [details] [associations]
symbol:hel-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0008380
GO:GO:0006397 GO:GO:0010171 GO:GO:0005681 GO:GO:0003723
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:NAENPAI EMBL:Z54327 EMBL:U08102
PIR:T19484 RefSeq:NP_001021985.1 ProteinModelPortal:Q18212
SMR:Q18212 STRING:Q18212 PaxDb:Q18212 PRIDE:Q18212
EnsemblMetazoa:C26D10.2a.1 EnsemblMetazoa:C26D10.2a.2 GeneID:174333
KEGG:cel:CELE_C26D10.2 UCSC:C26D10.2a CTD:174333 WormBase:C26D10.2a
InParanoid:Q18212 NextBio:883586 ArrayExpress:Q18212 GO:GO:0001703
Uniprot:Q18212
Length = 425
Score = 139 (54.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 63/255 (24%), Positives = 104/255 (40%)
Query: 128 RIPRIVLIAIDEAHCVSQWGH-DFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICT 186
++ ++ +DE C G D R R + E+ P + + + P + +C
Sbjct: 182 KLDKVKYFVLDE--CDKMIGDADMR---RDVQEIVKMTPQQKQVMMFSATLPKELRTVCK 236
Query: 187 SLMLRDPNIINTGFDRPNLYLAAS----VKQDDIMADLRKLTNFENQFE-GSTIIYCPTK 241
M +DP + D L L VK + + R+L N + E +I+
Sbjct: 237 RFM-QDPMEVYVD-DEAKLTLHGLQQHYVKLKEAEKN-RRLLNLLDALEFNQVVIFVKAV 293
Query: 242 VICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIK-VVVATCAFGMGIDKPDV 300
CE + +L+ + H ++ ++R + F KD K ++VAT FG G+D V
Sbjct: 294 KRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAF-KDFQKRILVATDLFGRGMDIERV 352
Query: 301 RCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHS 360
V +Y P+D +Y + RAGR G + TF + K Q D I E
Sbjct: 353 NIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRF-DISITELP 411
Query: 361 KTMMKRVEKYLELRT 375
+ + V Y+E RT
Sbjct: 412 EKI--DVSTYIEGRT 424
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 141 (54.7 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 32/105 (30%), Positives = 50/105 (47%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290
EG T+I+ TK + + + D L + H + ++R+ LF ++VAT
Sbjct: 430 EGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAV 489
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
G+D P+V VI+Y P D+ Y IGR GR G + F+
Sbjct: 490 ASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFF 534
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 140 (54.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 38/120 (31%), Positives = 55/120 (45%)
Query: 220 LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK 279
LR++ N G I++C KV + V L+++G P H + R E F
Sbjct: 239 LRRVIEATNVKNG--IVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRD 296
Query: 280 DLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
+K++VA+ G+D PDV V ++G P Y IGR GR G + YT AD
Sbjct: 297 GKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPAD 356
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 143 (55.4 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 51/217 (23%), Positives = 93/217 (42%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDI 184
++ + R+ + +DEA + G F P + ++ +R PD + +AT P ++ +
Sbjct: 449 VTNLRRVTYLVLDEADRMFDKG--FEPQIMKVVNNIR---PDKQTVLFSATF-PRHMEAL 502
Query: 185 CTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMA----DLRKLTNFENQF--EGSTIIYC 238
++ + I+ G + + + Q+ ++ KL + EGS+I++
Sbjct: 503 ARKVLDKPVEILVGG----KSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIVFV 558
Query: 239 PTKVICEKVCDVLSRNGIQN-RPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDK 297
+ + + D L R G + P H I R F +IKV+VAT G+D
Sbjct: 559 DKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDV 618
Query: 298 PDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
++ V++Y P Y +GR GR G YTF
Sbjct: 619 KNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTF 655
>MGI|MGI:1860494 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
"response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
Length = 851
Score = 142 (55.0 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 53/173 (30%), Positives = 80/173 (46%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGI--QN-RPYHAHISLKQRK-EIHGLFVKDLIKVVV 286
+G TII+C TK K LS+N Q+ + H I KQR+ + G F V+V
Sbjct: 510 QGRTIIFCETK----KDAQELSQNTCIKQDAQSLHGDIPQKQREITLKG-FRNGNFGVLV 564
Query: 287 ATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMI 346
AT G+D P+V V+ PKD+ +Y GR GR G + VC FY+ + + +
Sbjct: 565 ATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQV 624
Query: 347 FQP-NLNDSEIQEHSKT-MMKRVEK-YLELRTCRRKYLLNHFKGSSVTVAESQ 396
Q + I S T ++K K + L ++HFK S+ + E +
Sbjct: 625 EQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEK 677
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 141 (54.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 39/135 (28%), Positives = 65/135 (48%)
Query: 211 VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQR 270
V+++D + L L N + + T+++ TK + + D L R G H S + R
Sbjct: 470 VEENDKRSFLLDLLNATGK-DSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDR 528
Query: 271 KEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSV 330
+E F ++VAT G+D +V+ VI++ P D+ Y IGR GR G +
Sbjct: 529 EEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 588
Query: 331 CYTFY--KTADFTKN 343
+FY K ++ TK+
Sbjct: 589 ATSFYNDKNSNITKD 603
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 142 (55.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 35/119 (29%), Positives = 56/119 (47%)
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+L F + GS +++ K E++ + L + G H + +R ++ F K
Sbjct: 490 RRLVEFTSS--GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKK 547
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I V+VAT G+D P ++ VI+Y +D+ + IGR GR G V YT D
Sbjct: 548 DIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 139 (54.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 46/185 (24%), Positives = 81/185 (43%)
Query: 165 PDVPILAVTATATPVVIDDICTSLMLRDPNII----NTGFDRPNLYLAASVKQDDIMADL 220
P + I ++ + P ++++ S+M +I NT + L + ++ + L
Sbjct: 313 PSI-IRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLAL 371
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+ +F +I+ +K +++ D L I+ H+ + +R+ F
Sbjct: 372 RQ--SFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAG 429
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD- 339
V++AT G+D + CVI+Y P SAY IGR+GR G S TFY D
Sbjct: 430 EKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDV 489
Query: 340 -FTKN 343
F +N
Sbjct: 490 PFLRN 494
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 61/220 (27%), Positives = 91/220 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 235 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 288
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ--DDIMADLR--KLTNFENQF----EGSTI 235
LRD IN G NL L+A+ + Q D M + KL + E TI
Sbjct: 289 EDF-LRDYTQINVG----NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 343
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
I+ TK C+ + + R+G H S +R + F +++AT G+
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D DV+ VI+Y P Y IGR R YTF+
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 443
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 61/220 (27%), Positives = 91/220 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 235 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 288
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ--DDIMADLR--KLTNFENQF----EGSTI 235
LRD IN G NL L+A+ + Q D M + KL + E TI
Sbjct: 289 EDF-LRDYTQINVG----NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 343
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
I+ TK C+ + + R+G H S +R + F +++AT G+
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D DV+ VI+Y P Y IGR R YTF+
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 443
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 61/220 (27%), Positives = 91/220 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 235 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 288
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ--DDIMADLR--KLTNFENQF----EGSTI 235
LRD IN G NL L+A+ + Q D M + KL + E TI
Sbjct: 289 EDF-LRDYTQINVG----NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 343
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
I+ TK C+ + + R+G H S +R + F +++AT G+
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D DV+ VI+Y P Y IGR R YTF+
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 443
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 61/220 (27%), Positives = 91/220 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 234 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 287
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ--DDIMADLR--KLTNFENQF----EGSTI 235
LRD IN G NL L+A+ + Q D M + KL + E TI
Sbjct: 288 EDF-LRDYTQINVG----NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 342
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
I+ TK C+ + + R+G H S +R + F +++AT G+
Sbjct: 343 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 402
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D DV+ VI+Y P Y IGR R YTF+
Sbjct: 403 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 442
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 140 (54.3 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 61/220 (27%), Positives = 91/220 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 314 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 367
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ--DDIMADLR--KLTNFENQF----EGSTI 235
LRD IN G NL L+A+ + Q D M + KL + E TI
Sbjct: 368 EDF-LRDYTQINVG----NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 422
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
I+ TK C+ + + R+G H S +R + F +++AT G+
Sbjct: 423 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 482
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D DV+ VI+Y P Y IGR R YTF+
Sbjct: 483 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 522
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 140 (54.3 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 61/220 (27%), Positives = 91/220 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 314 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 367
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ--DDIMADLR--KLTNFENQF----EGSTI 235
LRD IN G NL L+A+ + Q D M + KL + E TI
Sbjct: 368 EDF-LRDYTQINVG----NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 422
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
I+ TK C+ + + R+G H S +R + F +++AT G+
Sbjct: 423 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 482
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D DV+ VI+Y P Y IGR R YTF+
Sbjct: 483 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 522
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 140 (54.3 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 61/220 (27%), Positives = 91/220 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 316 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 369
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ--DDIMADLR--KLTNFENQF----EGSTI 235
LRD IN G NL L+A+ + Q D M + KL + E TI
Sbjct: 370 EDF-LRDYTQINVG----NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 424
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
I+ TK C+ + + R+G H S +R + F +++AT G+
Sbjct: 425 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 484
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D DV+ VI+Y P Y IGR R YTF+
Sbjct: 485 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 524
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 140 (54.3 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 61/220 (27%), Positives = 91/220 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 316 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 369
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ--DDIMADLR--KLTNFENQF----EGSTI 235
LRD IN G NL L+A+ + Q D M + KL + E TI
Sbjct: 370 EDF-LRDYTQINVG----NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 424
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
I+ TK C+ + + R+G H S +R + F +++AT G+
Sbjct: 425 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 484
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D DV+ VI+Y P Y IGR R YTF+
Sbjct: 485 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 524
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 140 (54.3 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 43/124 (34%), Positives = 58/124 (46%)
Query: 205 LYLAA--SVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYH 262
LY A S + I++DL +T + G TI++ TK ++V LS N I H
Sbjct: 327 LYAIATTSTSKRTILSDL--ITVYAKG--GKTIVFTQTKRDADEVSLALS-NSIATEALH 381
Query: 263 AHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRA 322
IS QR+ F + V+VAT G+D P+V VIHY P D + GR
Sbjct: 382 GDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRT 441
Query: 323 GRDG 326
GR G
Sbjct: 442 GRAG 445
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 139 (54.0 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 57/215 (26%), Positives = 90/215 (41%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
I + IDEA + +F P R L ++R PD + +AT P + + S L
Sbjct: 370 ITYLVIDEADKMLDM--EFEPQIRKILLDVR---PDRQTVMTSAT-WPDTVRQLALSY-L 422
Query: 191 RDPNIINTGFDRPNLYLAASVKQDDIMA---DLRKLTN-F-ENQFEGSTII-YCPTKVIC 244
+DP I+ G NL +VKQ+ I+ + R LT F EN +I + K I
Sbjct: 423 KDPMIVYVG--NLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIA 480
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
+ + + GI H + ++ F IK+++ T G+D DV V
Sbjct: 481 DDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVY 540
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
+Y P+++ Y +G GR G + T D
Sbjct: 541 NYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRD 575
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 138 (53.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 45/166 (27%), Positives = 71/166 (42%)
Query: 170 LAVTATATPVVIDDICTSLMLRDPNIINTG-FDRPNLYLAASVKQDDIMADLRKLTNFEN 228
L +AT P I TS +++ P +N G NL + V+ A + L
Sbjct: 288 LLFSATM-PAKIQIFATSALVK-PVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQ 345
Query: 229 QFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT 288
+ +I+C K + + + L G++ H + R LF V+VAT
Sbjct: 346 KTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVAT 405
Query: 289 CAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
G+D PD++ VI+Y P ++ Y IGR GR G + + TF
Sbjct: 406 DVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTF 451
>RGD|1307306 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
Uniprot:Q3B8Q1
Length = 782
Score = 140 (54.3 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 41/110 (37%), Positives = 56/110 (50%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGI--QN-RPYHAHISLKQRK-EIHGLFVKDLIKVVV 286
+G TII+C TK K LS+N Q+ + H I KQR+ + G F V+V
Sbjct: 434 QGRTIIFCETK----KDAQELSQNTCIKQDAQSLHGDIPQKQREITLKG-FRNGNFGVLV 488
Query: 287 ATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
AT G+D P+V V+ PKD+ +Y GR GR G + VC FY+
Sbjct: 489 ATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQ 538
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 139 (54.0 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 62/222 (27%), Positives = 93/222 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 235 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 288
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ--DDIMADLR--KLTNFENQF----EGSTI 235
LRD IN G NL L+A+ + Q D M + KL + E TI
Sbjct: 289 EDF-LRDYTQINVG----NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 343
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT--CAFGM 293
I+ TK C+ + + R+G H S +R + F +++AT + G+
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 294 GIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
G D DV+ VI+Y P Y IGR R YTF+
Sbjct: 404 GFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 445
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 140 (54.3 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 53/219 (24%), Positives = 96/219 (43%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R+ + +DEA + G F P R +S++R PD L +AT P + +
Sbjct: 527 TNLRRVTYLVLDEADRMLDMG--FEPQIRKIISQIR---PDRQTLMFSAT-WPKEVQALA 580
Query: 186 TSLMLRDPNIINTGFDRPNLYLAASVKQD-DIMADLRKLTNFENQFEGST------IIYC 238
L D ++ G + +V+Q ++ D K + F GS I++
Sbjct: 581 HDF-LTDHIQVHIG--STEITANHNVRQIVEVCQDFEKKERMLS-FLGSVGRDEKVIVFA 636
Query: 239 PTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
T+ + + VL +G ++ H + S +R + F ++ +++AT G+D
Sbjct: 637 ETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIK 696
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKT 337
D++ V++Y P + Y IGR R G S V Y+ T
Sbjct: 697 DIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTT 735
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 139 (54.0 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+L F + GS +++ K E++ + L + H + +R ++ F K
Sbjct: 485 RRLVEFTSS--GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKK 542
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I ++VAT G+D P ++ VI+Y +D+ + IGR GR G V YT D
Sbjct: 543 GIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 601
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 138 (53.6 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 52/212 (24%), Positives = 100/212 (47%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I ++ +DE + + G F+ + L L D + V+AT PV I+ + L+
Sbjct: 353 IKIVVVDEVDTMLKMG--FQQ--QVLDILEDISHDHQTILVSATI-PVGIEHLANQLL-- 405
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMAD-------LRKLTNFENQFEGSTIIYCPTKVIC 244
N + NL ++V+Q + + L ++ N + F+ +++ K+
Sbjct: 406 -HNFVRITIGEKNLP-CSNVRQIILWVEEPSKKKKLFEILNDKKLFKPPVLVFVDCKLGA 463
Query: 245 EKVCDVLSR-NGIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
+ + D + + G+Q H+ S +R I GL +++ +V+V+T G G+D +V+
Sbjct: 464 DLLSDAVHKITGLQCTSMHSEKSQVERTAILQGL-LQEKYEVIVSTGVLGRGLDLVNVKL 522
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
V+++ P + Y ++GRAGR G S TF
Sbjct: 523 VVNFDMPSSMDEYVHQVGRAGRLGHSGTAITF 554
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 137 (53.3 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 52/223 (23%), Positives = 99/223 (44%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
++ + R+ + +DEA + G + + + + ++R PD L +AT P + +
Sbjct: 255 VTNLMRVTYLVLDEADKMLDMGFELQIR-KIVDQIR---PDRQTLMWSAT-WPKEVQALA 309
Query: 186 TSLMLRDPNIINTGFDRPNLYLAA--SVKQDD-IMADLRKLTNFENQFE------GSTII 236
L P +N G +L L A S+KQ+ ++ + K+ N ++ + I+
Sbjct: 310 KDLCKEQPIQVNVG----SLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRIIV 365
Query: 237 YCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGID 296
+ TK + + L +G+ H ++R+ + F +++AT G+D
Sbjct: 366 FVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLD 425
Query: 297 KPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
+V+ VI++ P + Y IGR GR G +TF TAD
Sbjct: 426 IKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFL-TAD 467
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 137 (53.3 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 52/223 (23%), Positives = 99/223 (44%)
Query: 126 LSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDIC 185
++ + R+ + +DEA + G + + + + ++R PD L +AT P + +
Sbjct: 255 VTNLMRVTYLVLDEADKMLDMGFELQIR-KIVDQIR---PDRQTLMWSAT-WPKEVQALA 309
Query: 186 TSLMLRDPNIINTGFDRPNLYLAA--SVKQDD-IMADLRKLTNFENQFE------GSTII 236
L P +N G +L L A S+KQ+ ++ + K+ N ++ + I+
Sbjct: 310 KDLCKEQPIQVNVG----SLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRIIV 365
Query: 237 YCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGID 296
+ TK + + L +G+ H ++R+ + F +++AT G+D
Sbjct: 366 FVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLD 425
Query: 297 KPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
+V+ VI++ P + Y IGR GR G +TF TAD
Sbjct: 426 IKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFL-TAD 467
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 135 (52.6 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 48/173 (27%), Positives = 75/173 (43%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNL-----YLAASVKQD-- 214
LP P V ++ V+AT V++ TS DP I D +L Y ++D
Sbjct: 196 LP-PSVQVVVVSATLPREVLE--MTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWK 252
Query: 215 -DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEI 273
D + DL ++N +I+C TK+ + D + + H + +R I
Sbjct: 253 FDTLCDL-----YDNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSI 307
Query: 274 HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326
F + +V+++T + GID V VI+Y P D Y IGR+GR G
Sbjct: 308 MNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFG 360
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 135 (52.6 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 53/203 (26%), Positives = 90/203 (44%)
Query: 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATAT-PVVIDDICTS 187
+ I +I +DEA + G F R + + ++P P L++ +AT + ++
Sbjct: 153 LKNIEVIVLDEADRMFDLG--FIKDIRYMFD-KMP-PATERLSMLFSATLSFRVKELAFD 208
Query: 188 LMLRDPNIINTGFD-RPNLYLAASV---KQDDIMADLRKLTNFENQFEGSTIIYCPTKVI 243
M DP + + + N ++ + +D M L+ L E + I++ TK +
Sbjct: 209 HM-NDPTSVEVEPEQKTNSRISEELFYPSNEDKMTLLQTL--IEEDWPEKAIVFANTKHV 265
Query: 244 CEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCV 303
CEKV D L+ + I+ + K+R +I F + ++VAT G+ P V V
Sbjct: 266 CEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILVATDVAARGLHIPSVTHV 325
Query: 304 IHYGAPKDLSAYYQEIGRAGRDG 326
+Y P D Y IGR GR G
Sbjct: 326 FNYDLPDDCQDYVHRIGRTGRAG 348
>TIGR_CMR|BA_4509 [details] [associations]
symbol:BA_4509 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268806 OMA:YAHVEPK HSSP:P10081
RefSeq:NP_846734.1 RefSeq:YP_021153.1 RefSeq:YP_030436.1
ProteinModelPortal:Q81LV0 SMR:Q81LV0
EnsemblBacteria:EBBACT00000013143 EnsemblBacteria:EBBACT00000016547
EnsemblBacteria:EBBACT00000022918 GeneID:1088235 GeneID:2818505
GeneID:2850064 KEGG:ban:BA_4509 KEGG:bar:GBAA_4509 KEGG:bat:BAS4187
ProtClustDB:CLSK887589 BioCyc:BANT260799:GJAJ-4244-MONOMER
BioCyc:BANT261594:GJ7F-4386-MONOMER Uniprot:Q81LV0
Length = 436
Score = 135 (52.6 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 206 YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHI 265
YL S ++ I + L F+ +++ TK + ++V D L G++ H +
Sbjct: 224 YLVPSKHRNKIDLVNKMLLQFKPYL---AVVFTNTKKMADQVADGLMERGLKVGRIHGDL 280
Query: 266 SLKQRKEIHGLFVKDL-IKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGR 324
S + RK++ ++DL + +VAT GID + VI+Y P DL + +GR R
Sbjct: 281 SPRDRKKMMKQ-IRDLEFQYIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTAR 339
Query: 325 DGLSSVCYTFYKTAD 339
G S + T Y A+
Sbjct: 340 AGHSGIAVTIYDPAN 354
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 135 (52.6 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 56/217 (25%), Positives = 98/217 (45%)
Query: 129 IPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSL 188
+ R+ ++ +DEA + G F P R + + LP P L +AT P+ I + +
Sbjct: 142 LSRLEVLVLDEADQMFDMG--FLPDIRRVLK-HLP-PRRQTLLFSATM-PIDIRTLAQDI 196
Query: 189 MLRDPNIINTGFDRPNLYLAAS---VKQD---DIMADLRKLTNFENQFEGSTIIYCPTKV 242
++ DP + G P + +A + V+Q ++ +L + T+ E S +I+ TK
Sbjct: 197 LV-DPVTVQVGTVAPAVTVAHALYPVEQHLKTPLLLELLRHTDTE-----SVLIFTRTKH 250
Query: 243 ICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRC 302
+++ + L + G + ++S +R+ F +++VAT GID V
Sbjct: 251 RAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQVSH 310
Query: 303 VIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
VI+Y P AY IGR GR S +T + D
Sbjct: 311 VINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDD 347
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 137 (53.3 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 49/201 (24%), Positives = 89/201 (44%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I + +DEA + G + + + L ++R PD + +AT P I + S L+
Sbjct: 363 ITYLVLDEADKMLDLGFEHQ-IMKILLDVR---PDRQTIMTSAT-WPDTIRQLAHSY-LK 416
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQF------EGSTIIYCPTKVICE 245
+P ++ G +L +VKQ+ I+ + + +F + I++ K+I +
Sbjct: 417 EPMLVYVG--TLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIAD 474
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
+ LS GI + H R+ F +K+++AT G+D DV V +
Sbjct: 475 DLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFN 534
Query: 306 YGAPKDLSAYYQEIGRAGRDG 326
Y P+++ Y +GR GR G
Sbjct: 535 YNFPRNIEEYVHRVGRTGRAG 555
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 137 (53.3 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 49/201 (24%), Positives = 89/201 (44%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I + +DEA + G + + + L ++R PD + +AT P I + S L+
Sbjct: 372 ITYLVLDEADKMLDLGFEHQ-IMKILLDVR---PDRQTIMTSAT-WPDTIRQLAHSY-LK 425
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQF------EGSTIIYCPTKVICE 245
+P ++ G +L +VKQ+ I+ + + +F + I++ K+I +
Sbjct: 426 EPMLVYVG--TLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIAD 483
Query: 246 KVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIH 305
+ LS GI + H R+ F +K+++AT G+D DV V +
Sbjct: 484 DLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFN 543
Query: 306 YGAPKDLSAYYQEIGRAGRDG 326
Y P+++ Y +GR GR G
Sbjct: 544 YNFPRNIEEYVHRVGRTGRAG 564
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 139 (54.0 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+L F + GS +++ K E++ + L + H + +R ++ F K
Sbjct: 490 RRLVEFTSS--GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKK 547
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I ++VAT G+D P ++ VI+Y +D+ + IGR GR G V YT D
Sbjct: 548 GIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 606
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 139 (54.0 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 221 RKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKD 280
R+L F + GS +++ K E++ + L + H + +R ++ F K
Sbjct: 492 RRLVEFTSS--GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKK 549
Query: 281 LIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I ++VAT G+D P ++ VI+Y +D+ + IGR GR G V YT D
Sbjct: 550 GIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 608
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 137 (53.3 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 65/263 (24%), Positives = 114/263 (43%)
Query: 118 LPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATA 176
L D+ + L + I + +DEA + G F P + + ++R PD + +AT
Sbjct: 412 LNDLQMNELINLRSITYLVLDEADRMLDMG--FEPQIMKIILDIR---PDRQTVMTSATW 466
Query: 177 TPVVIDDICTSLMLRDPNIINTGFDRPNLYLAA--SVKQDDIMA--DLRK--LTNFENQF 230
P V + S L+DP ++ G L LAA +V+Q + D +K + +F ++
Sbjct: 467 PPGV-RRLAKSY-LKDPMMVYVG----TLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHRM 520
Query: 231 E--GSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT 288
E +I+ K+ + + L GI + H R+E F ++++VAT
Sbjct: 521 EPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVAT 580
Query: 289 CAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF-TKNNMIF 347
G+D D+ V +Y P+++ Y +GR GR G S T D+ +I
Sbjct: 581 DLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELIT 640
Query: 348 QPNLNDSEIQEHSKTMMKRVEKY 370
+ ++ E M +R EK+
Sbjct: 641 ILERSGQDVPEELVLMAERYEKH 663
>UNIPROTKB|H0Y6Y1 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL445483 HGNC:HGNC:25360
ProteinModelPortal:H0Y6Y1 Ensembl:ENST00000429498 Uniprot:H0Y6Y1
Length = 197
Score = 125 (49.1 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 31/107 (28%), Positives = 55/107 (51%)
Query: 230 FEGSTIIYCPTKVICEKVCDVLSR-NGIQNRPYHAHISLKQRKEI-HGLFVKDLIKVVVA 287
F+ +++ K+ + + + + + G+++ H+ S +RK I GL D +VVV+
Sbjct: 21 FKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDY-EVVVS 79
Query: 288 TCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
T G G+D VR V+++ P + Y +IGR GR G + TF
Sbjct: 80 TGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITF 126
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 136 (52.9 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 231 EGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCA 290
+G T+I+ TK + +++ D L + H + +R+ F ++VAT
Sbjct: 399 DGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAV 458
Query: 291 FGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKT 337
G+D P+V VI+Y P D+ Y IGR GR G + + F+ +
Sbjct: 459 AARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 505
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 135 (52.6 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 44/179 (24%), Positives = 84/179 (46%)
Query: 207 LAASVKQDDIMAD-LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHI 265
L A +D ++ + LRK EN+ + +I+ TK C+ + L I N H +
Sbjct: 228 LCADYDRDMVLIEALRKYRE-ENE-NANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFM 285
Query: 266 SLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGR---A 322
K+R F + I+ ++AT G+D P V V+++ P+ Y +GR A
Sbjct: 286 RQKERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARA 345
Query: 323 GRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEH--SKTMMKRVEKYLELRTCRRK 379
GR G+S + F + + + +N +++ EH + M++R+ ++++ RR+
Sbjct: 346 GRKGMSISIFRFPRDLELLA---AIEEEIN-TKLTEHPIDQRMVERI--FMQVNVTRRE 398
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 136 (52.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 52/216 (24%), Positives = 95/216 (43%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSY-RCLSELRLPLPDVPILAVTATATPVVIDDICTSLML 190
I + +DEA + G F P + L ++R PD + +AT P + + S L
Sbjct: 392 ISYLVLDEADKMLDMG--FEPQIMKILLDIR---PDRQTVMTSAT-WPYAVRRLAQSY-L 444
Query: 191 RDPNIINTGFDRPNLYLAASVKQDDIMA-DLRKLTNFENQFEGST-----IIYCPTKVIC 244
++P I+ G +L ++VKQ+ I+ + K ++ + E + II+ K +
Sbjct: 445 KEPMIVYVG--TLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSPKDKVIIFVSRKAVA 502
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
+ + L I H + R+ F +++++AT G+D DV V
Sbjct: 503 DHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDLASRGLDVHDVTHVY 562
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTADF 340
+Y P+++ Y +GR GR G + V T +D+
Sbjct: 563 NYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDW 598
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 56/215 (26%), Positives = 92/215 (42%)
Query: 131 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLP-DVPILAVTATATPVVIDDICTSLM 189
RI + +DEA + G F+ + E+ +P DV ++ ++AT V+D T+
Sbjct: 171 RIKMFVLDEADEMLSRG--FKDQ---IYEVFRSMPQDVQVVLLSATMPSEVLD--VTNRF 223
Query: 190 LRDPNIINTGFDRPNL----YLAASVKQDDIMAD-LRKLTNFENQFEGSTIIYCPTKVIC 244
+R+P I D L +V++D+ D L L N N + +I+C T+
Sbjct: 224 MRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQA--VIFCNTRRKV 281
Query: 245 EKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVI 304
+ + + ++ N H + +R I F +V++ T GID V VI
Sbjct: 282 DTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVI 341
Query: 305 HYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
+Y P + Y IGR+GR G V F D
Sbjct: 342 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEND 376
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 48/186 (25%), Positives = 79/186 (42%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNL-----YLAASVKQD-- 214
LP PD+ + V+AT +++ TS + +P I D L + A K++
Sbjct: 205 LP-PDLQVCLVSATLPHEILE--MTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWK 261
Query: 215 -DIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEI 273
D + DL ++ +I+C TK + + + + + H + K+R I
Sbjct: 262 FDTLCDL-----YDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAI 316
Query: 274 HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYT 333
F +V++ T + GID V VI+Y P + Y IGR+GR G V
Sbjct: 317 MNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 376
Query: 334 FYKTAD 339
F K+ D
Sbjct: 377 FVKSDD 382
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 136 (52.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 38/135 (28%), Positives = 64/135 (47%)
Query: 211 VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQR 270
V+++D + L L N + + T+++ TK + + D L R G H S + R
Sbjct: 454 VEENDKRSFLLDLLNATGK-DSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDR 512
Query: 271 KEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSV 330
+E F ++VAT G+D +V+ VI++ P D+ Y IGR GR G +
Sbjct: 513 EEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL 572
Query: 331 CYTFY--KTADFTKN 343
+F+ K + TK+
Sbjct: 573 ATSFFNDKNGNITKD 587
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 136 (52.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 49/206 (23%), Positives = 87/206 (42%)
Query: 135 IAIDEAHCVSQWGHDFRPSYRCLSEL-RLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
+ +DEA + G F P R + E R+P + I A+ + P I + + +
Sbjct: 394 LVLDEADRMLDMG--FEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENY 451
Query: 194 NII---NTGFDRPNLYLAAS-VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCD 249
+ G N+ V++D+ + L L + T+++ TK +
Sbjct: 452 VFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGD-SSLTLVFVETKRGASDLAY 510
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L+R + H + +R++ LF ++VAT G+D P+V+ VI+Y P
Sbjct: 511 YLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLP 570
Query: 310 KDLSAYYQEIGRAGRDGLSSVCYTFY 335
D+ Y IGR GR G + +F+
Sbjct: 571 SDVDEYVHRIGRTGRVGNVGLATSFF 596
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 65/255 (25%), Positives = 108/255 (42%)
Query: 134 LIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
+ +DEA + G F+ +S +LP +L +AT P I+ I +L DP
Sbjct: 152 VFVLDEADTMLDMGF-FKDVQSIIS--KLPKSRQTLL-FSATM-PAEIE-ILAEAILTDP 205
Query: 194 NIINTGFDRPNLYLA-ASVKQDDIMADLRKLTNFENQFE-GSTIIYCPTKVICEKVCDVL 251
I + + L SV D + L N + + +I+C TK + + L
Sbjct: 206 TKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNILTKADYEKVLIFCKTKYGADIIVKAL 265
Query: 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD 311
+ I H+ + R+E F ++V+VAT GID ++ VI+Y P+D
Sbjct: 266 EKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGIDVDNITLVINYNLPED 325
Query: 312 LSAYYQEIGRAGRDGLSSVCYTFYKTADFTK----NNMIFQ--PNLNDSEI-QEHSKTMM 364
Y IGR R G S + +F D + N I Q P + + +E SK +
Sbjct: 326 PRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIENSIGQVIPVVTEQPFHKEFSKAPI 385
Query: 365 KRVEKYLELRTCRRK 379
+ +K +++ +RK
Sbjct: 386 QDKKKK-QVKKTKRK 399
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/184 (25%), Positives = 79/184 (42%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR 221
LP P ++ ++AT +++ T+ + DP I R L L +KQ + +
Sbjct: 204 LP-PATQVVLISATLPHEILE--MTNKFMTDP--IRILVKRDELTLEG-IKQFFVAVERE 257
Query: 222 --KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275
K + ++ TI I+C TK + + + + H + K+R+ I
Sbjct: 258 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 317
Query: 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
F +V+++T + G+D P V +I+Y P + Y IGR+GR G V F
Sbjct: 318 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 377
Query: 336 KTAD 339
K D
Sbjct: 378 KNDD 381
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/184 (25%), Positives = 79/184 (42%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR 221
LP P ++ ++AT +++ T+ + DP I R L L +KQ + +
Sbjct: 208 LP-PATQVVLISATLPHEILE--MTNKFMTDP--IRILVKRDELTLEG-IKQFFVAVERE 261
Query: 222 --KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275
K + ++ TI I+C TK + + + + H + K+R+ I
Sbjct: 262 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 321
Query: 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
F +V+++T + G+D P V +I+Y P + Y IGR+GR G V F
Sbjct: 322 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Query: 336 KTAD 339
K D
Sbjct: 382 KNDD 385
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/184 (25%), Positives = 79/184 (42%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR 221
LP P ++ ++AT +++ T+ + DP I R L L +KQ + +
Sbjct: 208 LP-PATQVVLISATLPHEILE--MTNKFMTDP--IRILVKRDELTLEG-IKQFFVAVERE 261
Query: 222 --KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275
K + ++ TI I+C TK + + + + H + K+R+ I
Sbjct: 262 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 321
Query: 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
F +V+++T + G+D P V +I+Y P + Y IGR+GR G V F
Sbjct: 322 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Query: 336 KTAD 339
K D
Sbjct: 382 KNDD 385
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/184 (25%), Positives = 79/184 (42%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR 221
LP P ++ ++AT +++ T+ + DP I R L L +KQ + +
Sbjct: 208 LP-PATQVVLISATLPHEILE--MTNKFMTDP--IRILVKRDELTLEG-IKQFFVAVERE 261
Query: 222 --KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275
K + ++ TI I+C TK + + + + H + K+R+ I
Sbjct: 262 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 321
Query: 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
F +V+++T + G+D P V +I+Y P + Y IGR+GR G V F
Sbjct: 322 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Query: 336 KTAD 339
K D
Sbjct: 382 KNDD 385
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/184 (25%), Positives = 79/184 (42%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR 221
LP P ++ ++AT +++ T+ + DP I R L L +KQ + +
Sbjct: 208 LP-PATQVVLISATLPHEILE--MTNKFMTDP--IRILVKRDELTLEG-IKQFFVAVERE 261
Query: 222 --KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275
K + ++ TI I+C TK + + + + H + K+R+ I
Sbjct: 262 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 321
Query: 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
F +V+++T + G+D P V +I+Y P + Y IGR+GR G V F
Sbjct: 322 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Query: 336 KTAD 339
K D
Sbjct: 382 KNDD 385
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/184 (25%), Positives = 79/184 (42%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR 221
LP P ++ ++AT +++ T+ + DP I R L L +KQ + +
Sbjct: 208 LP-PATQVVLISATLPHEILE--MTNKFMTDP--IRILVKRDELTLEG-IKQFFVAVERE 261
Query: 222 --KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275
K + ++ TI I+C TK + + + + H + K+R+ I
Sbjct: 262 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 321
Query: 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
F +V+++T + G+D P V +I+Y P + Y IGR+GR G V F
Sbjct: 322 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Query: 336 KTAD 339
K D
Sbjct: 382 KNDD 385
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/184 (25%), Positives = 79/184 (42%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR 221
LP P ++ ++AT +++ T+ + DP I R L L +KQ + +
Sbjct: 208 LP-PATQVVLISATLPHEILE--MTNKFMTDP--IRILVKRDELTLEG-IKQFFVAVERE 261
Query: 222 --KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275
K + ++ TI I+C TK + + + + H + K+R+ I
Sbjct: 262 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 321
Query: 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
F +V+++T + G+D P V +I+Y P + Y IGR+GR G V F
Sbjct: 322 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Query: 336 KTAD 339
K D
Sbjct: 382 KNDD 385
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/184 (25%), Positives = 79/184 (42%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR 221
LP P ++ ++AT +++ T+ + DP I R L L +KQ + +
Sbjct: 209 LP-PATQVVLISATLPHEILE--MTNKFMTDP--IRILVKRDELTLEG-IKQFFVAVERE 262
Query: 222 --KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275
K + ++ TI I+C TK + + + + H + K+R+ I
Sbjct: 263 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 322
Query: 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
F +V+++T + G+D P V +I+Y P + Y IGR+GR G V F
Sbjct: 323 EFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 382
Query: 336 KTAD 339
K D
Sbjct: 383 KNDD 386
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 134 (52.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 54/216 (25%), Positives = 101/216 (46%)
Query: 128 RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187
++ + + +DEA + + G F+ + E ++P D L +AT P +
Sbjct: 314 QLDHVRTVVVDEADTMLKMG--FQQQVLDILE-QVP-EDHQTLLTSATI-PTGTQQLAER 368
Query: 188 LMLRDPNIINTGF-DRP--NL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKV- 242
L DP I G ++P N+ + V++ L ++ N E ++ +++ K+
Sbjct: 369 LT-HDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILNDEKLYQPPVVVFVDCKLG 427
Query: 243 ---ICEKVCDVLSRNGIQNRPYHAH-ISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKP 298
+CE V V+S N + H+ + ++ K + GL ++ VV++T G G+D
Sbjct: 428 ADLLCEAVQKVMSLNTVA---IHSDKMQWERNKIVKGL-LEGQFDVVISTGILGRGLDLV 483
Query: 299 DVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
+V+ VI++ P ++ Y +IGRAGR G TF
Sbjct: 484 NVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITF 519
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 133 (51.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 60/220 (27%), Positives = 91/220 (41%)
Query: 127 SRIPRIVLIAIDEAHCVSQWGHDFRPSYR-CLSELRLPLPDVPILAVTATATPVVIDDIC 185
+ + R + +DEA + G F P R + ++R PD L +AT P + +
Sbjct: 233 TNLRRCTYLVLDEADRMLDMG--FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEVRQLA 286
Query: 186 TSLMLRDPNIINTGFDRPNLYLAAS--VKQ--DDIMADLR--KLTNFENQF----EGSTI 235
L+D IN G NL L+A+ + Q D M + KL + E TI
Sbjct: 287 EDF-LQDYVQINVG----NLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 341
Query: 236 IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGI 295
I+ TK C+ + + R+G H S +R + F +++AT G+
Sbjct: 342 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 401
Query: 296 DKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
D DV+ VI+Y P Y IGR R YTF+
Sbjct: 402 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFF 441
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 132 (51.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 41/163 (25%), Positives = 74/163 (45%)
Query: 170 LAVTATATPVVIDDICTSLMLRDPNI-INTGFDR-----PNLYLAASVKQDDIMADLRKL 223
L +AT ++D+ L+ I I G + + YL + + + D R L
Sbjct: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLD-RIL 245
Query: 224 TNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIK 283
+ E + II+ T+ +++ + L++N ++ +++ QR I G F + + K
Sbjct: 246 ADAEYR---QVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFK 302
Query: 284 VVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326
++V T G+D P V VI++ PK Y +GR GR G
Sbjct: 303 ILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAG 345
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 132 (51.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 41/163 (25%), Positives = 74/163 (45%)
Query: 170 LAVTATATPVVIDDICTSLMLRDPNI-INTGFDR-----PNLYLAASVKQDDIMADLRKL 223
L +AT ++D+ L+ I I G + + YL + + + D R L
Sbjct: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLD-RIL 245
Query: 224 TNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIK 283
+ E + II+ T+ +++ + L++N ++ +++ QR I G F + + K
Sbjct: 246 ADAEYR---QVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFK 302
Query: 284 VVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326
++V T G+D P V VI++ PK Y +GR GR G
Sbjct: 303 ILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAG 345
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 53/216 (24%), Positives = 86/216 (39%)
Query: 128 RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187
R+ + + +DEA + G + P LS V + + + P+ + +
Sbjct: 262 RLSDVSFVVLDEADRMLDMGFE-EPVRFILSNTN----KVRQMVMFSATWPLDVHKLAQE 316
Query: 188 LMLRDPNIINTGFDRPNLYLAASVKQ-----DDIMADLRKLTNFENQFEGS---TIIYCP 239
M DPN I +L V Q D+ D R + E + +++
Sbjct: 317 FM--DPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFAL 374
Query: 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
KV E++ L + G + H + + +R LF + ++VAT G+D PD
Sbjct: 375 YKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPD 434
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
V VI+Y P Y IGR GR G V +TF+
Sbjct: 435 VEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFF 470
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 132 (51.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/103 (26%), Positives = 50/103 (48%)
Query: 233 STIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFG 292
S++++C TK + V D L ++G H + ++R + F I ++VAT
Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304
Query: 293 MGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
G+D ++ V +Y +D + IGR GR G + ++F+
Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFF 347
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 49/184 (26%), Positives = 78/184 (42%)
Query: 162 LPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR 221
LP P ++ ++AT +++ TS + DP I R L L +KQ + +
Sbjct: 196 LP-PATQVVLISATLPHEILE--MTSKFMTDP--IRILVKRDELTLEG-IKQFFVAVERE 249
Query: 222 --KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHG 275
K + ++ TI I+C TK + + + + H + K+R EI
Sbjct: 250 EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMK 309
Query: 276 LFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFY 335
F +V++ T + GID V VI+Y P + Y IGR+GR G V F
Sbjct: 310 EFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
Query: 336 KTAD 339
K+ D
Sbjct: 370 KSDD 373
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 49/188 (26%), Positives = 81/188 (43%)
Query: 161 RLPLPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADL 220
+LP + ++ V+AT +++ T + DP I D +L +KQ + D
Sbjct: 195 KLP-KNCQVVVVSATMNKDILE--VTRKFMNDPVKILVKRDEISL---EGIKQYVVNVDK 248
Query: 221 R--KLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNR----PYHAHISLKQRKEIH 274
K + ++ TI C +K D LS+ IQ+ H + ++R ++
Sbjct: 249 EEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVM 308
Query: 275 GLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
F +V+++T + GID V VI+Y P+ + Y IGR+GR G V F
Sbjct: 309 NDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINF 368
Query: 335 YKTADFTK 342
AD K
Sbjct: 369 ITKADLAK 376
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 45/181 (24%), Positives = 80/181 (44%)
Query: 165 PDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR--K 222
P+ I+ +AT V++ I M + I+ R L L +KQ + + K
Sbjct: 189 PNTQIILSSATLPQEVLE-ITNKFMHKPVKIL---VKRDELTLEG-IKQFFVSIEKEQWK 243
Query: 223 LTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFV 278
+ +E TI ++C T++ + + + + HA +S +R +I F
Sbjct: 244 YETLADLYESLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFR 303
Query: 279 KDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTA 338
+ +V+++T +G G+D +V V++Y P +Y IGR+GR G V F K
Sbjct: 304 QCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKND 363
Query: 339 D 339
D
Sbjct: 364 D 364
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 45/181 (24%), Positives = 80/181 (44%)
Query: 165 PDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR--K 222
P+ I+ +AT V++ I M + I+ R L L +KQ + + K
Sbjct: 189 PNTQIILSSATLPQEVLE-ITNKFMHKPVKIL---VKRDELTLEG-IKQFFVSIEKEQWK 243
Query: 223 LTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFV 278
+ +E TI ++C T++ + + + + HA +S +R +I F
Sbjct: 244 YETLADLYESLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFR 303
Query: 279 KDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTA 338
+ +V+++T +G G+D +V V++Y P +Y IGR+GR G V F K
Sbjct: 304 QCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKND 363
Query: 339 D 339
D
Sbjct: 364 D 364
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 61/224 (27%), Positives = 98/224 (43%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I ++ +DEA + G F S + + LP +V L +AT + V + T++ R
Sbjct: 148 IEMVVLDEADRMLDMG--FIESINKIIDC-LP-SEVQFLLFSATLSRKVRELAKTAV--R 201
Query: 192 DPNIINTGFD---RPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKV 247
DP+ I+ + + N+ +V +D A L L N E Q++ +I+ TK K+
Sbjct: 202 DPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN-EQQWD-QALIFIETKHGAAKL 259
Query: 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307
L + GI +H+ S R ++ F IK +VAT GID + V++Y
Sbjct: 260 VSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYD 319
Query: 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNL 351
P Y IGR GR +F +F KN + + L
Sbjct: 320 LPFPADEYVHRIGRTGRAEAVGEAISFVSKDNF-KNLCMIESRL 362
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 61/224 (27%), Positives = 98/224 (43%)
Query: 132 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLR 191
I ++ +DEA + G F S + + LP +V L +AT + V + T++ R
Sbjct: 148 IEMVVLDEADRMLDMG--FIESINKIIDC-LP-SEVQFLLFSATLSRKVRELAKTAV--R 201
Query: 192 DPNIINTGFD---RPNL-YLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKV 247
DP+ I+ + + N+ +V +D A L L N E Q++ +I+ TK K+
Sbjct: 202 DPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN-EQQWD-QALIFIETKHGAAKL 259
Query: 248 CDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYG 307
L + GI +H+ S R ++ F IK +VAT GID + V++Y
Sbjct: 260 VSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYD 319
Query: 308 APKDLSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNL 351
P Y IGR GR +F +F KN + + L
Sbjct: 320 LPFPADEYVHRIGRTGRAEAVGEAISFVSKDNF-KNLCMIESRL 362
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 130 (50.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 57/220 (25%), Positives = 91/220 (41%)
Query: 128 RIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTS 187
R I ++ +DEA + G FR + LP P ++ V+AT P + D+ T
Sbjct: 164 RTRHIKMLVLDEADELLNRG--FREQIYDVYRY-LP-PATQVVVVSATL-PYDVLDMTTK 218
Query: 188 LMLRDPNIINTGFDRPNL-----YLAASVKQD---DIMADLRKLTNFENQFEGSTIIYCP 239
M DP + D L Y A K++ D + DL ++ +I+C
Sbjct: 219 FMT-DPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDL-----YDTLTITQAVIFCN 272
Query: 240 TKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD 299
T+ + + D + H + K+R I F + +V+++T + GID
Sbjct: 273 TRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQ 332
Query: 300 VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
V VI+Y P + Y IGR+GR G V F + D
Sbjct: 333 VSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDD 372
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 133 (51.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 43/163 (26%), Positives = 76/163 (46%)
Query: 173 TATATPVVIDDICTSLMLRDPNIINTGFDRPNL-------YLAASVKQDDIMADLRKLTN 225
+AT P+V + + LR+P ++ + ++ V++D+ MA L
Sbjct: 207 SATMPPMVKEIV--ERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARL----- 259
Query: 226 FENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHI--SLKQRKEIHGLFVKDLIK 283
E + ++I++ T+ E++ D L G + H I SL++R H + +I
Sbjct: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDH--IKQGVID 317
Query: 284 VVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326
++VAT G+D P + V +Y P D+ +Y IGR GR G
Sbjct: 318 ILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAG 360
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 133 (51.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 43/163 (26%), Positives = 76/163 (46%)
Query: 173 TATATPVVIDDICTSLMLRDPNIINTGFDRPNL-------YLAASVKQDDIMADLRKLTN 225
+AT P+V + + LR+P ++ + ++ V++D+ MA L
Sbjct: 207 SATMPPMVKEIV--ERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARL----- 259
Query: 226 FENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHI--SLKQRKEIHGLFVKDLIK 283
E + ++I++ T+ E++ D L G + H I SL++R H + +I
Sbjct: 260 LETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDH--IKQGVID 317
Query: 284 VVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDG 326
++VAT G+D P + V +Y P D+ +Y IGR GR G
Sbjct: 318 ILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAG 360
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 132 (51.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 35/105 (33%), Positives = 47/105 (44%)
Query: 235 IIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMG 294
II+ K +C+ + LS N I N H S R++ F +V++AT G
Sbjct: 445 IIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAITNFRNHESEVLIATDVAARG 504
Query: 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
ID P+V VI+Y K Y IGR GR G +TF D
Sbjct: 505 IDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQD 549
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 132 (51.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 35/105 (33%), Positives = 47/105 (44%)
Query: 235 IIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMG 294
II+ K +C+ + LS N I N H S R++ F +V++AT G
Sbjct: 445 IIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAITNFRNHESEVLIATDVAARG 504
Query: 295 IDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
ID P+V VI+Y K Y IGR GR G +TF D
Sbjct: 505 IDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQD 549
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 129 (50.5 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 52/182 (28%), Positives = 73/182 (40%)
Query: 164 LPDVPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLR-- 221
LP + + + P + ++ T M RDP I D L +KQ I +
Sbjct: 193 LPQSTQVVLLSATMPQDVLEVTTKFM-RDPVRILVKKDELTL---EGIKQFYIAVEKEEW 248
Query: 222 KLTNFENQFEGSTI----IYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLF 277
KL + +E TI I+C T+ + + D L+ H + QR I F
Sbjct: 249 KLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEF 308
Query: 278 VKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKT 337
+V++AT GID V VI+Y P + Y IGR GR G V F T
Sbjct: 309 RSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-T 367
Query: 338 AD 339
AD
Sbjct: 368 AD 369
WARNING: HSPs involving 128 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 451 451 0.00092 118 3 11 22 0.49 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 378
No. of states in DFA: 615 (65 KB)
Total size of DFA: 292 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.47u 0.10s 41.57t Elapsed: 00:00:08
Total cpu time: 41.54u 0.10s 41.64t Elapsed: 00:00:09
Start: Thu Aug 15 16:20:56 2013 End: Thu Aug 15 16:21:05 2013
WARNINGS ISSUED: 2