RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10478
(451 letters)
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 99.7 bits (247), Expect = 5e-25
Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 11/209 (5%)
Query: 200 FDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNR 259
FDRPN+ K + +R + + S IIYC ++ E L GI
Sbjct: 2 FDRPNIRYMLMEKFKPLDQLMRYVQEQRGK---SGIIYCNSRAKVEDTAARLQSKGISAA 58
Query: 260 PYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEI 319
YHA + R ++ F +D +++VVAT AFGMGI+KP+VR V+H+ P+++ +YYQE
Sbjct: 59 AYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQET 118
Query: 320 GRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEKYLELRTCRRK 379
GRAGRDGL + FY AD + ++Q+ + + + + E +TCRR
Sbjct: 119 GRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQG-QLQDIERHKLNAMGAFAEAQTCRRL 177
Query: 380 YLLNHFKGSSVTVAESQVPPDKCCDNCRH 408
LLN+F E + P CD C
Sbjct: 178 VLLNYF-------GEGRQEPCGNCDICLD 199
Score = 41.2 bits (95), Expect = 1e-04
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 9 DSEIQEHSKTMMKRVEKYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCR 63
++Q+ + + + + E +TCRR LLN+F E + P CD C
Sbjct: 151 QGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYF-------GEGRQEPCGNCDICL 198
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 88.1 bits (218), Expect = 4e-20
Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 15/146 (10%)
Query: 202 RPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPY 261
PN+ A +I K E G +I+C +K C+++ L GI Y
Sbjct: 8 HPNIEEVALSTTGEI-PFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAY 66
Query: 262 HAHISLKQRKEIHGL----------FVKDLIKVVVAT--CAFGMGIDKPD-VRCVIHYGA 308
+ + + + V+ C D +
Sbjct: 67 YRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTL 126
Query: 309 PKDLSAYYQEIGRAGRDGLSSVCYTF 334
P+D + Q GR GR G +
Sbjct: 127 PQDAVSRTQRRGRTGR-GKPGIYRFV 151
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 82.1 bits (202), Expect = 2e-18
Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 16/172 (9%)
Query: 220 LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK 279
+ L++ + IIY T E++ + L + I +K + FV+
Sbjct: 14 ISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVE 67
Query: 280 DLIKVVVATCAF----GMGIDKPD-VRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTF 334
I ++ T + G+D P+ +R + G P + I V
Sbjct: 68 GEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLA 123
Query: 335 YKTADFTKNNMIFQPNLND-SEIQEHSKTMMKRVEKYLELRTCRRKYLLNHF 385
Y + + + E++E K +M + + R ++
Sbjct: 124 YLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPD 175
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 80.7 bits (198), Expect = 2e-17
Identities = 39/304 (12%), Positives = 76/304 (25%), Gaps = 51/304 (16%)
Query: 52 QVPP---DKCCDNCRQVVYMTP--EYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRP 106
+ P + + + + P L +P A + D
Sbjct: 25 RYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLMC 84
Query: 107 SYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPD 166
L P+ R+P LI +DEAH R E+
Sbjct: 85 HATFTMRLLSPI---------RVPNYNLIIMDEAHFTDPASIAARGYISTRVEMG----- 130
Query: 167 VPILAVTATATPVVIDDICTSLMLRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNF 226
+ TATP D +++ +
Sbjct: 131 -EAAGIFMTATPPGSRDPFPQSNAPIM----------------DEEREIPERSWNSGHEW 173
Query: 227 ENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVV 286
F+G T+ + P+ + L +NG + + + ++ +
Sbjct: 174 VTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDI 233
Query: 287 ATCAFGMGIDK---------------PDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVC 331
+ ++ + R ++ P S+ Q GR GR+ +
Sbjct: 234 SEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEND 293
Query: 332 YTFY 335
Y
Sbjct: 294 QYIY 297
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 77.6 bits (190), Expect = 1e-16
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 8/119 (6%)
Query: 226 FENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQR--------KEIHGLF 277
+ + I++ + +K+ + L ++GI+ + + S + K I F
Sbjct: 156 LQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEF 215
Query: 278 VKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYK 336
+ V+VAT G+D P+V V+ Y Q GR GR V K
Sbjct: 216 ARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAK 274
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 70.9 bits (173), Expect = 2e-15
Identities = 31/130 (23%), Positives = 45/130 (34%), Gaps = 11/130 (8%)
Query: 198 TGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQ 257
PN+ A +I K E G +I+C +K C+++ L GI
Sbjct: 3 VTVPHPNIEEVALSTTGEI-PFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGIN 61
Query: 258 NRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPD---VRCVIHYGAPKDLSA 314
Y+ + + VVVAT A G + C G P+D +
Sbjct: 62 AVAYYRGLDVSVIPTNG-------DVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVS 114
Query: 315 YYQEIGRAGR 324
Q GR GR
Sbjct: 115 RTQRRGRTGR 124
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 69.7 bits (169), Expect = 2e-14
Identities = 39/105 (37%), Positives = 47/105 (44%)
Query: 91 IDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDF 150
+ R L L L VL+A+DEAHC+SQWGHDF
Sbjct: 99 QTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDF 158
Query: 151 RPSYRCLSELRLPLPDVPILAVTATATPVVIDDICTSLMLRDPNI 195
RP Y L +LR P +P +A+TATA DI L L DP I
Sbjct: 159 RPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI 203
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 64.0 bits (155), Expect = 1e-12
Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 18/161 (11%)
Query: 190 LRDPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCD 249
L DP I RP + DD++ ++R+ + T++ TK + E + D
Sbjct: 3 LLDPTIDV----RP-----TKGQIDDLIGEIRERVERNER----TLVTTLTKKMAEDLTD 49
Query: 250 VLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAP 309
L GI+ H+ I +R EI V+V G+D P+V V A
Sbjct: 50 YLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 109
Query: 310 KD-----LSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNM 345
K+ + Q IGRA R+ V + +
Sbjct: 110 KEGFLRSERSLIQTIGRAARNANGHVIMYADTITKSMEIAI 150
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 63.6 bits (154), Expect = 1e-12
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 9/131 (6%)
Query: 214 DDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEI 273
D+M +R+ + T++ T + E++ L +GI+ R H + +R+ +
Sbjct: 18 LDLMEGIRERAARGER----TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQAL 73
Query: 274 HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLS-----AYYQEIGRAGRDGLS 328
+V G+D P+V V A K+ + Q IGRA R+
Sbjct: 74 IRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARG 133
Query: 329 SVCYTFYKTAD 339
V + ++
Sbjct: 134 EVWLYADRVSE 144
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 61.5 bits (148), Expect = 5e-12
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 220 LRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVK 279
L E +++C TK +++ +L G + H +S QR+++ LF +
Sbjct: 17 FEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ 76
Query: 280 DLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
I++++AT GID D+ CVI+Y P++ +Y IGR GR G + +
Sbjct: 77 KKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE 136
Query: 340 FTKNNMIFQPNLNDSEIQEHSKTMMKRVE 368
+ K I+ K +K+++
Sbjct: 137 YKKLR----------YIERAMKLKIKKLK 155
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 60.3 bits (145), Expect = 2e-11
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 212 KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRK 271
+++ L L +++ +I+C T+ E++ L + ++ + ++R
Sbjct: 10 EEEYKYECLTDL--YDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 67
Query: 272 EIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVC 331
I F +++++T GID V VI+Y P + Y IGR GR G V
Sbjct: 68 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA 127
Query: 332 YTFYKTAD 339
F D
Sbjct: 128 INFVTNED 135
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 59.1 bits (142), Expect = 6e-11
Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 10/140 (7%)
Query: 201 DRPNLYLAASVKQDDIMAD----LRKLTNF-ENQFEGSTIIYCPTKVICEKVCDVLSRNG 255
+R L A + I + +RKL E + II+ + ++ V
Sbjct: 58 ERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPA 117
Query: 256 IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAY 315
I S ++R+EI F + +V++ GID PD + Y
Sbjct: 118 I-----THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREY 172
Query: 316 YQEIGRAGRDGLSSVCYTFY 335
Q +GR R Y
Sbjct: 173 IQRLGRILRPSKGKKEAVLY 192
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 57.3 bits (137), Expect = 2e-10
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 212 KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRK 271
+++ L L ++ +I+C TK + + + + H + K+R+
Sbjct: 17 REEWKFDTLCDL--YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERE 74
Query: 272 EIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVC 331
I F +V+++T + G+D P V +I+Y P + Y IGR+GR G V
Sbjct: 75 SIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA 134
Query: 332 YTFYKTADFTKNNMI 346
F K D I
Sbjct: 135 INFVKNDDIRILRDI 149
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 54.9 bits (131), Expect = 2e-09
Identities = 35/179 (19%), Positives = 52/179 (29%), Gaps = 39/179 (21%)
Query: 200 FDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNR 259
L L +L G +++ T+ EK LS +
Sbjct: 9 LCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYV 68
Query: 260 P------------------------------YHAHISLKQRKEIHGLFVKDLIKVVVATC 289
+HA + QR+ + F + IKVVVAT
Sbjct: 69 ENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATP 128
Query: 290 AFGMGIDKPDVRCVIH-------YGAPKDLSAYYQEIGRAGRDGL--SSVCYTFYKTAD 339
G++ P R ++ Y +S Y Q GRAGR G+ D
Sbjct: 129 TLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 187
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 54.2 bits (129), Expect = 2e-09
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 18/163 (11%)
Query: 212 KQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRK 271
+ D L + + + G II+C T+ + + + ++G Q ++++QR
Sbjct: 15 HRKDKYQALCNI--YGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRA 72
Query: 272 EIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK------DLSAYYQEIGRAGRD 325
I F KV++ T GID V V+++ P D Y IGR GR
Sbjct: 73 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRF 132
Query: 326 GLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVE 368
G + + + + +IQ+H + +K++
Sbjct: 133 GKKGLAFNMIEVDELPSLM----------KIQDHFNSSIKQLN 165
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 46.9 bits (111), Expect = 2e-06
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 24/127 (18%)
Query: 229 QFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVAT 288
+ T + P+ + L + G + K + + + ++AT
Sbjct: 34 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILAT 89
Query: 289 CAFGMGIDKPDVRCVIHYGAPKDLSAY-------------------YQEIGRAGRDGLSS 329
MG + V V+ Q GR GR+
Sbjct: 90 DIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD 148
Query: 330 VCYTFYK 336
+Y
Sbjct: 149 GDSYYYS 155
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 45.6 bits (107), Expect = 3e-06
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 261 YHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD-LSAYYQEI 319
H +S +++ + F + ++V+T +GID P ++ + L+ +Q
Sbjct: 70 MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLR 129
Query: 320 GRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDS--EIQEH 359
GR GR G + C+ + LN +I E+
Sbjct: 130 GRVGRGGQEAYCFLVVGDVGEEAMERLRFFTLNTDGFKIAEY 171
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 211
Score = 44.6 bits (105), Expect = 7e-06
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 256 IQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPK-DLSA 314
+ H + ++ + + F V+V T GID P +I A L+
Sbjct: 58 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 117
Query: 315 YYQEIGRAGRDGLSSVCYTFYK 336
+Q GR GR + +
Sbjct: 118 LHQLRGRVGRSHHQAYAWLLTP 139
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 38.5 bits (88), Expect = 6e-04
Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 11/163 (6%)
Query: 211 VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQR 270
+K ++ L L + +I+ + C + +L H + ++R
Sbjct: 9 LKDNEKNRKLFDL--LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 66
Query: 271 KEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSV 330
+ F +++VAT FG G+D V +Y P+D Y + RAGR G +
Sbjct: 67 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 126
Query: 331 CYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRVEKYLEL 373
TF + K +++Q+ + + + +++
Sbjct: 127 AITFVSDENDAKIL---------NDVQDRFEVNISELPDEIDI 160
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 38.1 bits (87), Expect = 7e-04
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
Query: 211 VKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQR 270
V++ + L L F II+C + E + ++ G HA + ++R
Sbjct: 14 VEERQKLHCLNTL--FSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQER 71
Query: 271 KEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSV 330
++ F + ++ +V + GID V VI++ PK Y IGR+GR G +
Sbjct: 72 NKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL 131
Query: 331 CYTFYKTADFTKNNMI 346
D I
Sbjct: 132 AINLINWNDRFNLYKI 147
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 36.0 bits (83), Expect = 0.004
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 10/114 (8%)
Query: 234 TIIYCPTKVICEKVCDVLSRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGM 293
++ E + +L GI ++ +A ++ + I K V +AT G
Sbjct: 37 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGR 94
Query: 294 GID--------KPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYTFYKTAD 339
G D + V+ + Q GR+GR G + + D
Sbjct: 95 GTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 36.1 bits (82), Expect = 0.008
Identities = 34/225 (15%), Positives = 70/225 (31%), Gaps = 13/225 (5%)
Query: 192 DPNIINTGFDRPNLYLAASVKQDDIMADLRKLTNFENQFEGSTIIYCPTKVICEKVCDVL 251
++ + + S K + L + Y T + EK+C
Sbjct: 82 ALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR 141
Query: 252 SRNGIQNRPYHAHISLKQRKEIHGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKD 311
++ + + E ++++ A G G++ ++ + +
Sbjct: 142 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWN 201
Query: 312 LSAYYQEIGRAGRDGLSSVCYTFYKTADFTKNNMIFQPNLNDSEIQEHSKTMMKRV--EK 369
+ Q + R RDG CY + + T I Q Q H K + V E+
Sbjct: 202 PANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQ-------RQAHKKALSSCVVDEE 254
Query: 370 YLELRTCRRKYLLNHFKGSSVTVAESQVPPDKC-CDNCRHNEMLE 413
R L F + T++++ D+ C C + +
Sbjct: 255 QDVERHFSLGELRELFSLNEKTLSDTH---DRFRCRRCVNGRQVR 296
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 32.2 bits (72), Expect = 0.10
Identities = 11/175 (6%), Positives = 41/175 (23%), Gaps = 14/175 (8%)
Query: 33 RRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNN------TSFLSRIP-R 85
R++ + ++ + P + + +
Sbjct: 57 RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 116
Query: 86 IVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLSRIPRIVLIAIDEAHCVSQ 145
+ + + + ++ + + I +D+ + +
Sbjct: 117 TENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILK 176
Query: 146 WGHDFRPSYRCL-------SELRLPLPDVPILAVTATATPVVIDDICTSLMLRDP 193
+ L ++ + ++ TATA ++ L+ D
Sbjct: 177 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDI 231
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 233
Score = 31.7 bits (71), Expect = 0.13
Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 19/147 (12%)
Query: 58 CCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLP 117
DN +QV + P + + + R + + + L+E+
Sbjct: 100 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR--FRSAKEQTQILAEVAEG 157
Query: 118 LPDVPILFLSRI------PRIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILA 171
D+ I + + L+ +DE H R R ++ +V IL
Sbjct: 158 KIDILIGTHKLLQSDVKFKDLGLLIVDEEH---------RFGVRHKERIKAMRANVDILT 208
Query: 172 VTATATPVVIDDICTSLMLRDPNIINT 198
+TAT P ++ + + D +II T
Sbjct: 209 LTATPIPRTLNMAMSGMR--DLSIIAT 233
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica
[TaxId: 671]}
Length = 291
Score = 27.9 bits (61), Expect = 2.5
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 207 LAASVKQDDIMADLRKLTNFENQFEGST 234
V I + L +F N+F +T
Sbjct: 13 WLPQVDASQITGTISSLESFTNRFYTTT 40
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 27.6 bits (60), Expect = 2.6
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 4/125 (3%)
Query: 25 KYLELRTCRRKYLLNHFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIP 84
+ L D+ +C +V + + + + S I
Sbjct: 78 RALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIK 137
Query: 85 RIVLIAIDEAHCVSQWGHDFRPSYRCLSELRLPLPDVPILFLS-RIPRIVLIA--IDEAH 141
+ + +DE H + ++++R + ++ LS P + IA +D +
Sbjct: 138 AVSCLVVDEIHLLDSEKRGATLEI-LVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADY 196
Query: 142 CVSQW 146
VS W
Sbjct: 197 YVSDW 201
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 26.5 bits (57), Expect = 7.7
Identities = 24/175 (13%), Positives = 46/175 (26%), Gaps = 19/175 (10%)
Query: 40 HFKGSSVTMAESQVPPDKCCDNCRQVVYMTPEYVTNNTSFLSRIPRIVLIAIDEAHCVSQ 99
G+ P PE V N ++ + +I A +
Sbjct: 126 EASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDI 185
Query: 100 WGHDFRPSYRCLSELRL--PLPDVPILFLSRIPRIVLIAIDEAHCVSQWGHDFRP-SYRC 156
+ + + L P + A G RP + R
Sbjct: 186 VSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRA 245
Query: 157 LSELRLPLPDVPILAVTATATPVVIDD-------------ICTSLMLRDPNIINT 198
++ + LP PILA + + +C+++ +D +I
Sbjct: 246 VTTIARALPGFPILATGGIDSA---ESGLQFLHSGASVLQVCSAVQNQDFTVIQD 297
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 179
Score = 26.1 bits (56), Expect = 8.0
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 11 EIQEHSKTMMKRVEKYLELRTCR 33
++QE K +K ++ ++ RT
Sbjct: 1 DVQETQKGALKEIQAFIRSRTSY 23
Score = 26.1 bits (56), Expect = 8.0
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 355 EIQEHSKTMMKRVEKYLELRTCR 377
++QE K +K ++ ++ RT
Sbjct: 1 DVQETQKGALKEIQAFIRSRTSY 23
>d1dj2a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse-ear
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 429
Score = 26.2 bits (57), Expect = 9.8
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 274 HGLFVKDLIKVVVATCAFGMGIDKPDVRCVIHYGAPKDLSAYYQEIGRAGRDGLSSVCYT 333
H ++ + K + GI D CVI G L ++EI DGL S +
Sbjct: 45 HTIYNSEGKKFALHL--VPSGILNEDTTCVIGNGVVVHLPGLFKEI-----DGLESNGVS 97
Query: 334 FYKTADFTKNN-MIFQPNLNDSEIQEHSKTMMKR 366
+ ++F + ++E
Sbjct: 98 CKGRILVSDRAHLLFDFHQEVDGLRESELAKSFI 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.425
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,772,037
Number of extensions: 86794
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 39
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.3 bits)