BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10479
         (222 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GSU|A Chain A, An Avian Class-Mu Glutathione S-Transferase, Cgstm1-1 At
           1.94 Angstrom Resolution
 pdb|1GSU|B Chain B, An Avian Class-Mu Glutathione S-Transferase, Cgstm1-1 At
           1.94 Angstrom Resolution
          Length = 219

 Score = 30.4 bits (67), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 90  KESLSSFLPNLPGII--DAPGSQDNSSLRSVIEKPPICGK 127
           KE L    PNLP +I  D   +Q N+ LR +  K  +CG+
Sbjct: 49  KEKLGLDFPNLPYLIDGDVKLTQSNAILRYIARKHNMCGE 88


>pdb|1C72|A Chain A, Tyr115, Gln165 And Trp209 Contribute To The
           1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
           Activities Of Glutathione S-Transferase Cgstm1-1
 pdb|1C72|B Chain B, Tyr115, Gln165 And Trp209 Contribute To The
           1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
           Activities Of Glutathione S-Transferase Cgstm1-1
 pdb|1C72|C Chain C, Tyr115, Gln165 And Trp209 Contribute To The
           1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
           Activities Of Glutathione S-Transferase Cgstm1-1
 pdb|1C72|D Chain D, Tyr115, Gln165 And Trp209 Contribute To The
           1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
           Activities Of Glutathione S-Transferase Cgstm1-1
          Length = 219

 Score = 30.4 bits (67), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 90  KESLSSFLPNLPGII--DAPGSQDNSSLRSVIEKPPICGK 127
           KE L    PNLP +I  D   +Q N+ LR +  K  +CG+
Sbjct: 49  KEKLGLDFPNLPYLIDGDVKLTQSNAILRYIARKHNMCGE 88


>pdb|3EII|A Chain A, Zinc-Bound Glycoside Hydrolase 61 E From Thielavia
          Terrestris
 pdb|3EII|B Chain B, Zinc-Bound Glycoside Hydrolase 61 E From Thielavia
          Terrestris
 pdb|3EII|C Chain C, Zinc-Bound Glycoside Hydrolase 61 E From Thielavia
          Terrestris
 pdb|3EII|D Chain D, Zinc-Bound Glycoside Hydrolase 61 E From Thielavia
          Terrestris
 pdb|3EJA|A Chain A, Magnesium-Bound Glycoside Hydrolase 61 Isoform E From
          Thielavia Terrestris
 pdb|3EJA|B Chain B, Magnesium-Bound Glycoside Hydrolase 61 Isoform E From
          Thielavia Terrestris
 pdb|3EJA|C Chain C, Magnesium-Bound Glycoside Hydrolase 61 Isoform E From
          Thielavia Terrestris
 pdb|3EJA|D Chain D, Magnesium-Bound Glycoside Hydrolase 61 Isoform E From
          Thielavia Terrestris
          Length = 208

 Score = 26.9 bits (58), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 34 TLKTTISLGKNPSIVHSGP--FYLMKEPPGK 62
          T  +T++   NP + H GP  FY+ + P G+
Sbjct: 53 TAGSTVTYWANPDVYHPGPVQFYMARVPDGE 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.129    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,018,619
Number of Sequences: 62578
Number of extensions: 226950
Number of successful extensions: 627
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 4
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)