BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10479
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q174D3|MED19_AEDAE Mediator of RNA polymerase II transcription subunit 19 OS=Aedes
aegypti GN=MED19 PE=3 SV=1
Length = 253
Score = 276 bits (705), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/206 (71%), Positives = 171/206 (83%), Gaps = 4/206 (1%)
Query: 1 MMGDQYRKMEQYSPKTSPR----GSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLM 56
MM DQ+RK+EQYSPK+SPR G RSP+V+RQD++GTLKTTI LGKNPSIVHSGPFYLM
Sbjct: 9 MMTDQFRKVEQYSPKSSPRAGGAGGRSPVVARQDSSGTLKTTIQLGKNPSIVHSGPFYLM 68
Query: 57 KEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLR 116
KEPPG+ E TG+ NLMA YGLEH+Y+KF GKK+KE LSSFLPNLPG+ID PG DNSSLR
Sbjct: 69 KEPPGEGELTGATNLMAHYGLEHSYSKFSGKKVKEQLSSFLPNLPGVIDGPGHLDNSSLR 128
Query: 117 SVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDT 176
SVIEKPPI GK++LPLTSVQLAGFRLHPG LPEQY+ V +++HKNKHKKHKYK G
Sbjct: 129 SVIEKPPIGGKDLLPLTSVQLAGFRLHPGPLPEQYKHLKSVPTRKHKNKHKKHKYKEGVA 188
Query: 177 SNPDANMGDVSYSDSHEKKHKKQKRH 202
+ + + S D+HEKKHKKQKRH
Sbjct: 189 PLSEQSALEASGLDTHEKKHKKQKRH 214
>sp|Q9VVL6|MED19_DROME Mediator of RNA polymerase II transcription subunit 19
OS=Drosophila melanogaster GN=MED19 PE=2 SV=1
Length = 337
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/204 (60%), Positives = 153/204 (75%), Gaps = 4/204 (1%)
Query: 1 MMGDQYRKMEQYSPKTSPRGS-RSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
MM + M+ SPK+SP G RSP+V+RQD++GTLKTTISLGK P+I+H+GPFY MKEP
Sbjct: 1 MMSNYGNMMD--SPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTGPFYSMKEP 58
Query: 60 PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPG-SQDNSSLRSV 118
P K+E TG +LM YGL HT KF KK KESL+SFL N+PGI D +NS+LRSV
Sbjct: 59 PAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIPGINDLITHPVENSTLRSV 118
Query: 119 IEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDTSN 178
IEKPPI GKE+LPLT VQLAGFRLHPG LPEQYR +++HKNKHKK K+K G T+
Sbjct: 119 IEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQYRTTYVTPARKHKNKHKKQKHKDGVTTG 178
Query: 179 PDANMGDVSYSDSHEKKHKKQKRH 202
++ + D + +++EKKHKKQKRH
Sbjct: 179 QESTLLDSAGLETYEKKHKKQKRH 202
>sp|Q07FY3|MED19_XENTR Mediator of RNA polymerase II transcription subunit 19 OS=Xenopus
tropicalis GN=med19 PE=2 SV=1
Length = 249
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 108/155 (69%), Gaps = 8/155 (5%)
Query: 50 SGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGS 109
+GPFY+++E PG S+ TGSVNL+ Y LEH+++KFCGKK+KE LS+FLP+LPG+ID PG+
Sbjct: 71 AGPFYILRELPGLSDLTGSVNLILHYNLEHSFSKFCGKKMKEKLSNFLPDLPGMIDTPGA 130
Query: 110 QDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKH 169
QDNSSLRS+IEKPPICG PLT L GFRLH G LPEQ R+ + K K
Sbjct: 131 QDNSSLRSLIEKPPICGNSFTPLTGALLTGFRLHTGPLPEQCRLMH--IQPPKKKNKKHK 188
Query: 170 KYKTGDTSNPDANMGDVSYSDSHEKKHKKQKRHND 204
+ +T + + P+ + SDS +K KK++R +D
Sbjct: 189 QSRTQEPAPPE------TPSDSDHRKKKKKQREDD 217
>sp|Q5EAY2|MED19_XENLA Mediator of RNA polymerase II transcription subunit 19 OS=Xenopus
laevis GN=med19 PE=2 SV=1
Length = 240
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 119/171 (69%), Gaps = 8/171 (4%)
Query: 50 SGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGS 109
+GPFYL++E PG S+ T S+NL+ Y LEH+++KFCGKK+KE LS+FLP+LPG+ID PG+
Sbjct: 62 AGPFYLLRELPGLSDLTASINLILHYNLEHSFSKFCGKKVKEKLSNFLPDLPGMIDTPGT 121
Query: 110 QDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKH 169
DNSSLRS+IEKPPICG PLT L GFRLH G LPEQ R+ + K K
Sbjct: 122 PDNSSLRSLIEKPPICGNAFTPLTGALLTGFRLHTGPLPEQCRLMH--IQPPKKKNKKHK 179
Query: 170 KYKTGDTSNPDANMGDVSYSDSHEKKHKKQKRHNDDKERKKRKKEKKKKNR 220
+ +T + + P+ + SDS +K KK++R +D + RKK+K +KKKK+R
Sbjct: 180 QSRTQEPAPPE------TPSDSDHRKKKKKQREDDPERRKKKKDKKKKKSR 224
>sp|Q8C1S0|MED19_MOUSE Mediator of RNA polymerase II transcription subunit 19 OS=Mus
musculus GN=Med19 PE=1 SV=1
Length = 244
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 86/117 (73%)
Query: 37 TTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSF 96
T+ G + S SGPFYLM+E PG +E TGS NL+ Y LE YNKFCGKK+KE LS+F
Sbjct: 49 TSAPAGADKSTAGSGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNF 108
Query: 97 LPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRI 153
LP+LPG+ID PGS DNSSLRS+IEKPPI G P+T L+GFRLH G LPEQ R+
Sbjct: 109 LPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLSGFRLHTGPLPEQCRL 165
>sp|Q6DRL8|MD19B_DANRE Mediator of RNA polymerase II transcription subunit 19-B OS=Danio
rerio GN=med19b PE=2 SV=1
Length = 240
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 79/102 (77%)
Query: 52 PFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQD 111
PFYL++E P ++E TG NL+ Y LEH YNKFCGKK+KE LS+FLP LPG+ID+PG QD
Sbjct: 61 PFYLLRELPMENELTGHTNLITHYNLEHAYNKFCGKKVKEKLSNFLPELPGMIDSPGIQD 120
Query: 112 NSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRI 153
NSSLRS+IEKPP+C PLT L GFRLH G LPEQYR+
Sbjct: 121 NSSLRSLIEKPPVCNNSFSPLTGAMLTGFRLHTGPLPEQYRL 162
>sp|A0JLT2|MED19_HUMAN Mediator of RNA polymerase II transcription subunit 19 OS=Homo
sapiens GN=MED19 PE=1 SV=2
Length = 244
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 79/104 (75%)
Query: 50 SGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGS 109
GPFYLM+E PG +E TGS NL+ Y LE YNKFCGKK+KE LS+FLP+LPG+ID PGS
Sbjct: 62 CGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLPGMIDLPGS 121
Query: 110 QDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRI 153
DNSSLRS+IEKPPI P+T LAGFRLH G LPEQ R+
Sbjct: 122 HDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRL 165
>sp|Q08C81|MD19A_DANRE Mediator of RNA polymerase II transcription subunit 19-A OS=Danio
rerio GN=med19a PE=2 SV=1
Length = 242
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 78/102 (76%)
Query: 52 PFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQD 111
PFYL++E P ++ TG+ NL+ Y LEH YNKFCGKK+KE LS+FLP LPG+ID PG QD
Sbjct: 65 PFYLLRELPVGNDLTGNTNLITHYNLEHAYNKFCGKKVKEKLSNFLPELPGMIDCPGVQD 124
Query: 112 NSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRI 153
SSLRS+IEKPP+CG PLT L GFRLH G LPEQYR+
Sbjct: 125 GSSLRSLIEKPPVCGNSFSPLTGALLTGFRLHTGPLPEQYRL 166
>sp|Q9N4F2|MED19_CAEEL Mediator of RNA polymerase II transcription subunit 19
OS=Caenorhabditis elegans GN=mdt-19 PE=3 SV=1
Length = 199
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 52 PFYLMKEP-PGKSEKTGSVNLMASYGLEHTYNKFCG-KKLKESLSSFLPNLPGIIDAPGS 109
PFY +K P SE G+ +L+ SY L F G +++KE +SSFLP++ G +
Sbjct: 21 PFYTLKALLPPYSEIQGNHDLLMSYELGPVEGGFSGSRRVKEKISSFLPHIIGEFHLDAT 80
Query: 110 QDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYR 152
++ SSLR++IEKPPI KEI LTS + GF+L G + E+YR
Sbjct: 81 KEASSLRALIEKPPI-HKEISNLTSSSMQGFKLSAGPVDERYR 122
>sp|B4U1E8|IF2_STREM Translation initiation factor IF-2 OS=Streptococcus equi subsp.
zooepidemicus (strain MGCS10565) GN=infB PE=3 SV=1
Length = 947
Score = 35.4 bits (80), Expect = 0.34, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 147 LPEQYRIANQVASKRHKNKHKKHKYKTGDTSNPDANMGDVSYSDSHEKKHKKQKRHNDDK 206
L +Q R + A+ + + + KKH+ + + P A+M + +K+ KKQ R +
Sbjct: 241 LEQQARQEAKAAALKAQTEDKKHREASAKATEPIASMAAAPVAKPVDKRRKKQNRPDKGH 300
Query: 207 ERKKRKKEKKKKNR 220
+R ++ +KKN+
Sbjct: 301 DRDHGLEDGQKKNK 314
>sp|Q55BA4|MED19_DICDI Putative mediator of RNA polymerase II transcription subunit 19
OS=Dictyostelium discoideum GN=med19 PE=3 SV=1
Length = 299
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 50 SGPFYLMKEPPGKSEK-TGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPG 102
S YL+ SE TG NL+ + L T N+F K L + S++ NLPG
Sbjct: 2 SSSLYLINPIEKSSENITGETNLLEHFNLYKTLNEFNSKHLSSTYKSYVKNLPG 55
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 142 LHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDTSNPDANMGDVSYSDSHEKKHKKQKR 201
L+ +LPE + +V H+ + + GDT PD + + +++ K +
Sbjct: 1366 LYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDTGKPDVLSASLEGQLTKQEERKTEAE 1425
Query: 202 HNDDKERKKRKKEKKKKNR 220
D K KK +K +KKN+
Sbjct: 1426 ERDQKGEKKNQKRNEKKNQ 1444
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,381,852
Number of Sequences: 539616
Number of extensions: 4028331
Number of successful extensions: 30396
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 314
Number of HSP's that attempted gapping in prelim test: 22144
Number of HSP's gapped (non-prelim): 5262
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)