Query psy10479
Match_columns 222
No_of_seqs 50 out of 52
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 19:14:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bom_B Bombyxin-II,bombyxin A- 15.3 37 0.0013 21.0 0.2 14 82-95 7-20 (28)
2 3kde_C Transposable element P 11.1 1E+02 0.0035 22.8 1.6 21 130-150 46-76 (77)
3 3e21_A HFAF1, FAS-associated f 9.3 55 0.0019 21.7 -0.4 31 64-99 14-45 (45)
4 2grg_A Hypothetical protein; Y 9.1 19 0.00066 28.8 -3.2 50 92-143 28-82 (120)
5 1x3l_A Hypothetical protein PH 9.0 1.3E+02 0.0046 28.2 1.9 33 42-79 199-231 (440)
6 3a7l_A H-protein, glycine clea 7.8 59 0.002 25.2 -0.9 41 39-86 82-126 (128)
7 1q8h_A Osteocalcin; helix-turn 7.7 1.6E+02 0.0055 20.1 1.3 17 70-86 31-47 (49)
8 3pie_A 5'->3' exoribonuclease 7.6 1.3E+02 0.0044 31.8 1.2 22 94-120 290-311 (1155)
9 1rxw_A Flap structure-specific 7.5 2.2E+02 0.0074 24.7 2.5 31 66-103 209-243 (336)
10 1a76_A Flap endonuclease-1 pro 7.4 2.2E+02 0.0075 24.5 2.4 27 70-103 202-233 (326)
No 1
>1bom_B Bombyxin-II,bombyxin A-6; insulin-like brain-secretory peptide; HET: PCA; NMR {Bombyx mori} SCOP: g.1.1.1 PDB: 1bon_B*
Probab=15.29 E-value=37 Score=20.96 Aligned_cols=14 Identities=29% Similarity=0.926 Sum_probs=11.9
Q ss_pred Hhhhcccchhhhhh
Q psy10479 82 NKFCGKKLKESLSS 95 (222)
Q Consensus 82 ~kFcgKklKEsLSs 95 (222)
+.|||+.|-+.|+.
T Consensus 7 ~~YCGR~La~tLa~ 20 (28)
T 1bom_B 7 HTYCGRHLARTLAD 20 (28)
T ss_dssp CCCCSSTTTTGGGT
T ss_pred ccchHHHHHHHHHH
Confidence 46899999999985
No 2
>3kde_C Transposable element P transposase; THAP domain, DNA-binding domain, zinc-finger, beta-alpha-BET element transposase, DNA integration; HET: BRU; 1.74A {Drosophila melanogaster}
Probab=11.10 E-value=1e+02 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=14.1
Q ss_pred ccCCHHhhhcc----------ccCCCCCchh
Q psy10479 130 LPLTSVQLAGF----------RLHPGNLPEQ 150 (222)
Q Consensus 130 ~PLs~~~L~gF----------rL~pGplPEq 150 (222)
..|+.+|+..+ +|.||.||-+
T Consensus 46 ~HF~~Sd~~~~~~~~~~~krRrL~~~AiPt~ 76 (77)
T 3kde_C 46 THFNDSQWKAAPAKGQTFKRRRLNADAVPSK 76 (77)
T ss_dssp GGSCGGGBCCC--CCCCCSSCCBCTTCCCCC
T ss_pred HhCCHHHheecccccccccceecCCCCCCCC
Confidence 47888887522 5777777754
No 3
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=9.31 E-value=55 Score=21.67 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=17.3
Q ss_pred CCCCcch-hHHhhCchhhhHhhhcccchhhhhhhCCC
Q psy10479 64 EKTGSVN-LMASYGLEHTYNKFCGKKLKESLSSFLPN 99 (222)
Q Consensus 64 ELTGa~d-LishYgLe~~y~kFcgKklKEsLSsFLPn 99 (222)
+|||..| -.+.+=|+. |+=.|-..+++|+|+
T Consensus 14 ~iTG~~d~~~A~~~Lea-----~nWDLe~Av~~f~~~ 45 (45)
T 3e21_A 14 ACTGIENIDEAITLLEQ-----NNWDLVAAINGVIPQ 45 (45)
T ss_dssp HHHCCCCHHHHHHHHHH-----TTTCHHHHHTTC---
T ss_pred HHHCCCCHHHHHHHHHH-----cCCcHHHHHHHHcCC
Confidence 4677666 344444444 566677778888774
No 4
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=9.08 E-value=19 Score=28.81 Aligned_cols=50 Identities=30% Similarity=0.528 Sum_probs=39.6
Q ss_pred hhhhhCCCCCCcccCCCC---CCCcchhhhhcCCCCCCcccccCCHHhhh--ccccC
Q psy10479 92 SLSSFLPNLPGIIDAPGS---QDNSSLRSVIEKPPICGKEILPLTSVQLA--GFRLH 143 (222)
Q Consensus 92 sLSsFLPnLpG~id~~~~---~d~ssLrsLIekPPI~gKei~PLs~~~L~--gFrL~ 143 (222)
.|+.-||+..|.+-++.. .|.+.+..+|+|-++ ..|.-|+..+|. ||.+-
T Consensus 28 ~L~ellP~alGtLtFDen~nlIessGIgk~i~k~rV--eDIv~lS~veLd~eGyaV~ 82 (120)
T 2grg_A 28 PITEVLPRAVGSLTFDENYNLLDTSGVAKVIEKSPI--AEIIRKSNAELGRLGYSVY 82 (120)
T ss_dssp EHHHHHHHCSEEEEECTTSCEEEEEEGGGTSCCTTH--HHHHHHHHHHCSSEEEEEE
T ss_pred cHHHhcCCceeEEEEcCCCCEEeccccccccccchH--HHHHHHhhhhhcccceeEE
Confidence 467789999999877754 456777888888887 578888988887 88765
No 5
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=9.00 E-value=1.3e+02 Score=28.23 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCCcccccCCeeeccCCCCCCCCCCcchhHHhhCchh
Q psy10479 42 GKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEH 79 (222)
Q Consensus 42 G~~p~i~~~~PFYLmke~P~~sELTGa~dLishYgLe~ 79 (222)
|-.+++|-|||- -|.++...-+.++|..|||.+
T Consensus 199 GDdl~~IASGPT-----vpd~tt~~dA~~il~ry~l~~ 231 (440)
T 1x3l_A 199 GDNLEAIASGPT-----VKDPTTFEDAKRILELYDIWE 231 (440)
T ss_dssp TCCTTTGGGCTT-----SCCCCCHHHHHHHHHHTTCTT
T ss_pred CCChhheecCCc-----CCCCCCHHHHHHHHHHhCCcc
Confidence 999999999999 677888888999999999964
No 6
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=7.80 E-value=59 Score=25.24 Aligned_cols=41 Identities=24% Similarity=0.536 Sum_probs=27.4
Q ss_pred EeCCCCCcccccCCe---eecc-CCCCCCCCCCcchhHHhhCchhhhHhhhc
Q psy10479 39 ISLGKNPSIVHSGPF---YLMK-EPPGKSEKTGSVNLMASYGLEHTYNKFCG 86 (222)
Q Consensus 39 I~lG~~p~i~~~~PF---YLmk-e~P~~sELTGa~dLishYgLe~~y~kFcg 86 (222)
..|+.+|.++...|| +|++ ++-.+.++ .+||+. ..|.+||+
T Consensus 82 ~~l~~~P~lvn~dpy~~gWl~~i~~~~~~~~---~~Ll~~----~~Y~~~~~ 126 (128)
T 3a7l_A 82 DALSDSPELVNSEPYAGGWIFKIKASDESEL---ESLLDA----TAYEALLE 126 (128)
T ss_dssp GGGGTCTTHHHHCTTTTTCCEEEEESCGGGG---GGCBCH----HHHHHHHH
T ss_pred hhhccChHHhccCCCCCccEEEEEECCHHHH---HhcCCH----HHHHHHHh
Confidence 346999999987777 6666 33334444 246654 67888886
No 7
>1q8h_A Osteocalcin; helix-turn-helix-turn-helix, paper-CLIP, hydroxyapatite CRYS surface binding protein, calcium binding protein; HET: CGU; 2.00A {Sus scrofa} SCOP: g.32.1.1 PDB: 1q3m_A*
Probab=7.66 E-value=1.6e+02 Score=20.14 Aligned_cols=17 Identities=29% Similarity=0.749 Sum_probs=14.8
Q ss_pred hhHHhhCchhhhHhhhc
Q psy10479 70 NLMASYGLEHTYNKFCG 86 (222)
Q Consensus 70 dLishYgLe~~y~kFcg 86 (222)
.|.-+||+..+|++|-|
T Consensus 31 ~~A~~~G~~~AY~ryfG 47 (49)
T 1q8h_A 31 ELADHIGFQEAYRRFYG 47 (49)
T ss_dssp HHHHHHCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 56789999999999876
No 8
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=7.58 E-value=1.3e+02 Score=31.82 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=14.4
Q ss_pred hhhCCCCCCcccCCCCCCCcchhhhhc
Q psy10479 94 SSFLPNLPGIIDAPGSQDNSSLRSVIE 120 (222)
Q Consensus 94 SsFLPnLpG~id~~~~~d~ssLrsLIe 120 (222)
.+||||||. +|++.+ .|..||+
T Consensus 290 NDFLPhlP~-l~I~~g----~i~~L~~ 311 (1155)
T 3pie_A 290 NDFLPNLPD-LHLKKG----AFPVLLQ 311 (1155)
T ss_pred cccCCCCCc-cCcCCC----hHHHHHH
Confidence 469999995 466643 5555543
No 9
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=7.50 E-value=2.2e+02 Score=24.66 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=22.0
Q ss_pred CCcchhHHhhCchhh----hHhhhcccchhhhhhhCCCCCCc
Q psy10479 66 TGSVNLMASYGLEHT----YNKFCGKKLKESLSSFLPNLPGI 103 (222)
Q Consensus 66 TGa~dLishYgLe~~----y~kFcgKklKEsLSsFLPnLpG~ 103 (222)
-...+++..|||.+. |-..|| |+|+|.|||+
T Consensus 209 ~~~~~v~~~~gl~~~q~id~~~L~G-------sD~ipGv~Gi 243 (336)
T 1rxw_A 209 IILESNLKRLGLTREQLIDIAILVG-------TDYNEGVKGV 243 (336)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHC-------BTTBCCCTTC
T ss_pred eEHHHHHHHcCCCHHHHHHHHhhcC-------CCCCCCCCCc
Confidence 345677888888653 223467 8999999996
No 10
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=7.36 E-value=2.2e+02 Score=24.52 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=0.0
Q ss_pred hhHHhhCchhh----hHhhhcccchhhhhhhCC-CCCCc
Q psy10479 70 NLMASYGLEHT----YNKFCGKKLKESLSSFLP-NLPGI 103 (222)
Q Consensus 70 dLishYgLe~~----y~kFcgKklKEsLSsFLP-nLpG~ 103 (222)
+++..|||.+. |-.+|| |+|+| .|||+
T Consensus 202 ~v~~~~gl~~~q~id~~~L~G-------sD~~p~GvpGi 233 (326)
T 1a76_A 202 EVLEDLRISLDDLIDIAIFMG-------TDYNPGGVKGI 233 (326)
T ss_dssp HHHHHHTCCHHHHHHHHHHHC-------CTTSTTTTTTC
T ss_pred HHHHHcCCCHHHHHHHHHHcC-------CCCCCCCCCCc
Done!