Query psy10479
Match_columns 222
No_of_seqs 50 out of 52
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 19:14:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10479.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10479hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rxwa1 a.60.7.1 (A:220-324) F 13.5 35 0.0026 23.5 1.5 10 94-103 15-24 (105)
2 d1zgha2 c.65.1.1 (A:1-164) Met 11.8 31 0.0022 25.4 0.8 17 138-155 69-85 (164)
3 d1ul1x1 a.60.7.1 (X:218-357) F 11.0 39 0.0028 23.8 1.1 29 94-122 15-46 (140)
4 d1xzpa1 a.24.25.1 (A:118-211,A 10.7 26 0.0019 25.6 -0.0 11 77-87 162-173 (173)
5 d2grga1 d.110.10.1 (A:1-98) Un 9.0 8.9 0.00065 28.0 -3.2 49 93-143 7-60 (98)
6 d2cg4a2 d.58.4.2 (A:67-152) Re 7.4 12 0.00087 24.7 -3.0 52 62-122 32-83 (86)
7 d1jvra_ a.61.1.2 (A:) HTLV-II 6.8 68 0.0049 24.3 0.9 16 138-153 31-46 (137)
8 d1q8ha_ g.32.1.1 (A:) Osteocal 6.4 96 0.007 18.6 1.3 17 70-86 19-35 (37)
9 d1k4za_ b.80.5.1 (A:) C-termin 5.9 40 0.0029 25.9 -0.9 11 146-156 136-146 (157)
10 d1fmta2 c.65.1.1 (A:1-206) Met 5.2 74 0.0054 23.4 0.3 16 139-155 106-121 (206)
No 1
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.47 E-value=35 Score=23.45 Aligned_cols=10 Identities=10% Similarity=0.497 Sum_probs=9.3
Q ss_pred hhhCCCCCCc
Q psy10479 94 SSFLPNLPGI 103 (222)
Q Consensus 94 SsFLPnLpG~ 103 (222)
|+|.|.|||+
T Consensus 15 sDn~pGV~GI 24 (105)
T d1rxwa1 15 TDYNEGVKGV 24 (105)
T ss_dssp BTTBCCCTTC
T ss_pred CCCCCCCCCc
Confidence 8999999997
No 2
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]}
Probab=11.84 E-value=31 Score=25.39 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=13.6
Q ss_pred hccccCCCCCchhhhhhh
Q psy10479 138 AGFRLHPGNLPEQYRIAN 155 (222)
Q Consensus 138 ~gFrL~pGplPEqyr~~~ 155 (222)
..|-+|||+|| .||+..
T Consensus 69 ~~in~H~s~LP-~yRG~~ 85 (164)
T d1zgha2 69 TCVVFHMTDLP-FGRGGS 85 (164)
T ss_dssp CEEEEESSCTT-TTEESC
T ss_pred CCccCCCCchh-cccccc
Confidence 36789999999 678765
No 3
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.98 E-value=39 Score=23.84 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=19.1
Q ss_pred hhhCCCCCCcccCCCC---CCCcchhhhhcCC
Q psy10479 94 SSFLPNLPGIIDAPGS---QDNSSLRSVIEKP 122 (222)
Q Consensus 94 SsFLPnLpG~id~~~~---~d~ssLrsLIekP 122 (222)
|+|+|.|||+=.-.+. .+..+|..||++.
T Consensus 15 sD~~pgv~gIG~ktA~kli~~~~~le~i~~~~ 46 (140)
T d1ul1x1 15 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRL 46 (140)
T ss_dssp CSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTC
T ss_pred CCCCCCCCCccHHHHHHHHHHhCCHHHHHHHH
Confidence 8999999998332221 3455677777764
No 4
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}
Probab=10.68 E-value=26 Score=25.57 Aligned_cols=11 Identities=45% Similarity=1.238 Sum_probs=8.0
Q ss_pred chhhhHhhh-cc
Q psy10479 77 LEHTYNKFC-GK 87 (222)
Q Consensus 77 Le~~y~kFc-gK 87 (222)
|...|..|| ||
T Consensus 162 Ld~IFs~FCiGK 173 (173)
T d1xzpa1 162 LDTIFSNFCVGK 173 (173)
T ss_dssp HHHHHTTSCTTC
T ss_pred HHHHHHhcCCCC
Confidence 567788898 54
No 5
>d2grga1 d.110.10.1 (A:1-98) Uncharacterized protein YNR034W-A {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.96 E-value=8.9 Score=28.02 Aligned_cols=49 Identities=31% Similarity=0.536 Sum_probs=38.2
Q ss_pred hhhhCCCCCCcccCCCC---CCCcchhhhhcCCCCCCcccccCCHHhhh--ccccC
Q psy10479 93 LSSFLPNLPGIIDAPGS---QDNSSLRSVIEKPPICGKEILPLTSVQLA--GFRLH 143 (222)
Q Consensus 93 LSsFLPnLpG~id~~~~---~d~ssLrsLIekPPI~gKei~PLs~~~L~--gFrL~ 143 (222)
|+..||+..|.+-+... .|.+.+.+.|+|-++ ..|.-||..+|. ||.+-
T Consensus 7 L~el~p~aiGtlaFDen~nliessGIg~~i~K~rv--eDI~~lS~~eld~~Gy~v~ 60 (98)
T d2grga1 7 ITEVLPRAVGSLTFDENYNLLDTSGVAKVIEKSPI--AEIIRKSNAELGRLGYSVY 60 (98)
T ss_dssp HHHHHHHCSEEEEECTTSCEEEEEEGGGTSCCTTH--HHHHHHHHHHCSSEEEEEE
T ss_pred HHHhcCCceeEEEEcCCCCEEeecccccccchhhH--HHHHHHhhhhhcccceeEE
Confidence 56688999998877654 456777888888887 578888888887 88765
No 6
>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=7.36 E-value=12 Score=24.69 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=33.2
Q ss_pred CCCCCCcchhHHhhCchhhhHhhhcccchhhhhhhCCCCCCcccCCCCCCCcchhhhhcCC
Q psy10479 62 KSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEKP 122 (222)
Q Consensus 62 ~sELTGa~dLishYgLe~~y~kFcgKklKEsLSsFLPnLpG~id~~~~~d~ssLrsLIekP 122 (222)
...+||..|+|.+.--... ..+.+=|.+-|..+||+..+... ..|++.|+++
T Consensus 32 ~~~vtG~~D~i~~v~~~d~------~~l~~~i~~~i~~~~gV~~t~T~---ivl~~~~~r~ 83 (86)
T d2cg4a2 32 AYYTTGHYSIFIKVMCRSI------DALQHVLINKIQTIDEIQSTETL---IVLQNPIMRT 83 (86)
T ss_dssp EEEESSSCSEEEEEEESCH------HHHHHHHHHTTTTSTTEEEEEEE---ECSEEEEECC
T ss_pred EEEecCCceEEEEEEECCH------HHHHHHHHHHhhcCCCEeEEEEE---EEEcceecCC
Confidence 4568999999877543332 12333345568889998876643 5666677665
No 7
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=6.77 E-value=68 Score=24.26 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=12.0
Q ss_pred hccccCCCCCchhhhh
Q psy10479 138 AGFRLHPGNLPEQYRI 153 (222)
Q Consensus 138 ~gFrL~pGplPEqyr~ 153 (222)
+++||+|||-+--|.-
T Consensus 31 aAyRLqPgPS~~DF~q 46 (137)
T d1jvra_ 31 AAYRLQPGPSDFDFQQ 46 (137)
T ss_dssp HHHHSSCCCSTTTHHH
T ss_pred HHHhcCCCCCcccHHH
Confidence 3999999997655543
No 8
>d1q8ha_ g.32.1.1 (A:) Osteocalcin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=6.40 E-value=96 Score=18.59 Aligned_cols=17 Identities=29% Similarity=0.749 Sum_probs=14.7
Q ss_pred hhHHhhCchhhhHhhhc
Q psy10479 70 NLMASYGLEHTYNKFCG 86 (222)
Q Consensus 70 dLishYgLe~~y~kFcg 86 (222)
.|..|-|+..+|..|-|
T Consensus 19 elad~igfqeayrrfyg 35 (37)
T d1q8ha_ 19 ELADHIGFQEAYRRFYG 35 (37)
T ss_dssp HHHHHHCHHHHHHHHHS
T ss_pred HHHHHhhHHHHHHHHhc
Confidence 36779999999999977
No 9
>d1k4za_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.91 E-value=40 Score=25.85 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=8.2
Q ss_pred CCchhhhhhhh
Q psy10479 146 NLPEQYRIANQ 156 (222)
Q Consensus 146 plPEqyr~~~~ 156 (222)
||||||+....
T Consensus 136 piPEQf~t~~~ 146 (157)
T d1k4za_ 136 PIPEQMKHSFA 146 (157)
T ss_dssp ECCCCEEEEEE
T ss_pred cChhHEEEEEE
Confidence 48999987654
No 10
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}
Probab=5.25 E-value=74 Score=23.38 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=12.5
Q ss_pred ccccCCCCCchhhhhhh
Q psy10479 139 GFRLHPGNLPEQYRIAN 155 (222)
Q Consensus 139 gFrL~pGplPEqyr~~~ 155 (222)
+|-+|||+||+ ||+..
T Consensus 106 ~iN~Hps~LP~-yRG~~ 121 (206)
T d1fmta2 106 CINVHGSLLPR-WRGAA 121 (206)
T ss_dssp EEEEESSSTTT-TBSSC
T ss_pred eeecCchhhHh-hhhhh
Confidence 67789999996 66654
Done!