Your job contains 1 sequence.
>psy10479
MMGDQYRKMEQYSPKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPP
GKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIE
KPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASKRHKNKHKKHKYKTGDTSNPD
ANMGDVSYSDSHEKKHKKQKRHNDDKERKKRKKEKKKKNRIE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10479
(222 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036761 - symbol:MED19 "Mediator complex subunit 1... 535 1.5e-51 1
UNIPROTKB|F1NC09 - symbol:MED19 "Uncharacterized protein"... 398 4.9e-37 1
UNIPROTKB|F1SJY0 - symbol:MED19 "Uncharacterized protein"... 397 6.3e-37 1
UNIPROTKB|A7YWK4 - symbol:MED19 "MED19 protein" species:9... 394 1.3e-36 1
UNIPROTKB|E2R409 - symbol:MED19 "Uncharacterized protein"... 394 1.3e-36 1
RGD|1311926 - symbol:Med19 "mediator complex subunit 19" ... 392 2.1e-36 1
MGI|MGI:1914234 - symbol:Med19 "mediator of RNA polymeras... 390 3.5e-36 1
UNIPROTKB|A0JLT2 - symbol:MED19 "Mediator of RNA polymera... 378 6.5e-35 1
UNIPROTKB|J3KR33 - symbol:MED19 "Mediator of RNA polymera... 378 6.5e-35 1
ZFIN|ZDB-GENE-060929-232 - symbol:med19a "mediator comple... 374 1.7e-34 1
ZFIN|ZDB-GENE-040727-4 - symbol:med19b "mediator complex ... 343 3.0e-33 2
WB|WBGene00007019 - symbol:mdt-19 species:6239 "Caenorhab... 183 3.0e-14 1
>FB|FBgn0036761 [details] [associations]
symbol:MED19 "Mediator complex subunit 19" species:7227
"Drosophila melanogaster" [GO:0016592 "mediator complex"
evidence=IEA;ISS] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR019403 Pfam:PF10278 EMBL:AE014296 GO:GO:0016592
GO:GO:0001104 eggNOG:NOG264473 GeneTree:ENSGT00390000001774
KO:K15137 EMBL:AY069647 RefSeq:NP_649016.1 UniGene:Dm.2027
IntAct:Q9VVL6 MINT:MINT-286473 STRING:Q9VVL6 PaxDb:Q9VVL6
PRIDE:Q9VVL6 EnsemblMetazoa:FBtr0075160 GeneID:39987
KEGG:dme:Dmel_CG5546 CTD:219541 FlyBase:FBgn0036761
InParanoid:Q9VVL6 OMA:KQKRHED OrthoDB:EOG42RBQJ PhylomeDB:Q9VVL6
ChiTaRS:MED19 GenomeRNAi:39987 NextBio:816420 Bgee:Q9VVL6
Uniprot:Q9VVL6
Length = 337
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 112/201 (55%), Positives = 138/201 (68%)
Query: 1 MMGDQYRKMEQYSPKTSPRGS-RSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEP 59
MM + M+ SPK+SP G RSP+V+RQD++GTLKTTISLGK P+I+H+GPFY MKEP
Sbjct: 1 MMSNYGNMMD--SPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTGPFYSMKEP 58
Query: 60 PGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDA-PGSQDNSSLRSV 118
P K+E TG +LM YGL HT KF KK KESL+SFL N+PGI D +NS+LRSV
Sbjct: 59 PAKAELTGDKDLMTEYGLHHTLTKFKEKKFKESLASFLQNIPGINDLITHPVENSTLRSV 118
Query: 119 IEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXXXXXXXXXXXXXTGDTSN 178
IEKPPI GKE+LPLT VQLAGFRLHPG LPEQYR + G T+
Sbjct: 119 IEKPPIGGKELLPLTPVQLAGFRLHPGPLPEQYRTTYVTPARKHKNKHKKQKHKDGVTTG 178
Query: 179 PDANMGDVSYSDSHEKKHKKQ 199
++ + D + +++EKKHKKQ
Sbjct: 179 QESTLLDSAGLETYEKKHKKQ 199
>UNIPROTKB|F1NC09 [details] [associations]
symbol:MED19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA] InterPro:IPR019403 Pfam:PF10278 GO:GO:0016592
GO:GO:0001104 GeneTree:ENSGT00390000001774 OMA:EEDPDRK
EMBL:AADN02050748 IPI:IPI00570966 Ensembl:ENSGALT00000011877
Uniprot:F1NC09
Length = 238
Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 82/150 (54%), Positives = 98/150 (65%)
Query: 50 SGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGS 109
+GPFYL++E PG +E TGS NL+ Y LEH YNKFCGKK+KE LS+FLP+LPG+ID PGS
Sbjct: 56 AGPFYLLRELPGSTELTGSTNLITHYNLEHAYNKFCGKKVKEKLSNFLPDLPGMIDLPGS 115
Query: 110 QDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXXXXXXXXXX 169
DNSSLRS+IEKPPICG PLT L GFRLH G LPEQ R+ + +
Sbjct: 116 HDNSSLRSLIEKPPICGSSFTPLTGTMLTGFRLHAGPLPEQCRLMH-IQPPKKKNKHKHK 174
Query: 170 XXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
T D P+ S SD H+KK KK+
Sbjct: 175 QSRTQDPVPPETP----SDSD-HKKKKKKK 199
>UNIPROTKB|F1SJY0 [details] [associations]
symbol:MED19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016592 "mediator complex" evidence=IEA] [GO:0001104
"RNA polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR019403 Pfam:PF10278 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00390000001774 KO:K15137 OMA:EEDPDRK EMBL:CU914175
RefSeq:XP_003122763.2 Ensembl:ENSSSCT00000014397 GeneID:100520359
KEGG:ssc:100520359 Uniprot:F1SJY0
Length = 244
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 85/162 (52%), Positives = 103/162 (63%)
Query: 38 TISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFL 97
T + G + S GPFYLM+E PG +E TGS NL+ Y LEH+YNKFCGKK+KE LS+FL
Sbjct: 50 TAAPGSDKSAAGCGPFYLMRELPGSTELTGSTNLITHYNLEHSYNKFCGKKVKEKLSNFL 109
Query: 98 PNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQV 157
P+LPG+ID PGS DNSSLRS+IEKPPI G P+T LAGFRLH G LPEQ R+ + +
Sbjct: 110 PDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGFRLHTGPLPEQCRLMH-I 168
Query: 158 ASXXXXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
T D P+ S SD H+KK KK+
Sbjct: 169 QPPKKKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205
>UNIPROTKB|A7YWK4 [details] [associations]
symbol:MED19 "MED19 protein" species:9913 "Bos taurus"
[GO:0016592 "mediator complex" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR019403 Pfam:PF10278 GO:GO:0016592 GO:GO:0001104
eggNOG:NOG264473 GeneTree:ENSGT00390000001774 HOGENOM:HOG000047323
HOVERGEN:HBG055317 KO:K15137 OrthoDB:EOG4JWVFM CTD:219541
OMA:EEDPDRK EMBL:DAAA02041769 EMBL:BC134635 IPI:IPI00700023
RefSeq:NP_001098818.1 UniGene:Bt.9184 STRING:A7YWK4
Ensembl:ENSBTAT00000003099 GeneID:509245 KEGG:bta:509245
InParanoid:A7YWK4 NextBio:20868889 Uniprot:A7YWK4
Length = 244
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 84/158 (53%), Positives = 100/158 (63%)
Query: 42 GKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLP 101
G + S GPFYLM+E PG +E TGS NL+ Y LEH YNKFCGKK+KE LS+FLP+LP
Sbjct: 54 GSDKSAAGCGPFYLMRELPGSTELTGSTNLITHYNLEHAYNKFCGKKVKEKLSNFLPDLP 113
Query: 102 GIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXX 161
G+ID PGS DNSSLRS+IEKPPI G P+T LAGFRLH G LPEQ R+ + +
Sbjct: 114 GMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGFRLHTGPLPEQCRLMH-IQPPK 172
Query: 162 XXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
T D P+ S SD H+KK KK+
Sbjct: 173 KKNKQKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205
>UNIPROTKB|E2R409 [details] [associations]
symbol:MED19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR019403 Pfam:PF10278 GO:GO:0016592
GO:GO:0001104 GeneTree:ENSGT00390000001774 OMA:EEDPDRK
EMBL:AAEX03011433 Ensembl:ENSCAFT00000012440 NextBio:20898391
Uniprot:E2R409
Length = 252
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 84/158 (53%), Positives = 101/158 (63%)
Query: 42 GKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLP 101
G + S GPFYLM+E PG +E TGS NL+ Y LEH+YNKFCGKK+KE LS+FLP+LP
Sbjct: 62 GADKSAAGCGPFYLMRELPGSTELTGSTNLITHYNLEHSYNKFCGKKVKEKLSNFLPDLP 121
Query: 102 GIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXX 161
G+ID PGS DNSSLRS+IEKPPI G P+T LAGFRLH G LPEQ R+ + +
Sbjct: 122 GMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGFRLHTGPLPEQCRLMH-IQPPK 180
Query: 162 XXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
T D P+ S SD H+KK KK+
Sbjct: 181 KKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 213
>RGD|1311926 [details] [associations]
symbol:Med19 "mediator complex subunit 19" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0016592 "mediator complex" evidence=IEA;ISO] InterPro:IPR019403
Pfam:PF10278 RGD:1311926 EMBL:CH473949 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00390000001774 KO:K15137 OrthoDB:EOG4JWVFM CTD:219541
IPI:IPI00192373 RefSeq:NP_001101211.1 UniGene:Rn.4240
Ensembl:ENSRNOT00000008911 GeneID:311165 KEGG:rno:311165
UCSC:RGD:1311926 NextBio:663080 Uniprot:D3ZAP1
Length = 244
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 84/163 (51%), Positives = 103/163 (63%)
Query: 37 TTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSF 96
T+ +G + S SGPFYLM+E PG +E TGS NL+ Y LE YNKFCGKK+KE LS+F
Sbjct: 49 TSAPVGADKSTAGSGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNF 108
Query: 97 LPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQ 156
LP+LPG+ID PGS DNSSLRS+IEKPPI G P+T L+GFRLH G LPEQ R+ +
Sbjct: 109 LPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLSGFRLHTGPLPEQCRLMH- 167
Query: 157 VASXXXXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
+ T D P+ S SD H+KK KK+
Sbjct: 168 IQPPKKKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205
>MGI|MGI:1914234 [details] [associations]
symbol:Med19 "mediator of RNA polymerase II transcription,
subunit 19 homolog (yeast)" species:10090 "Mus musculus"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016592 "mediator
complex" evidence=IDA] InterPro:IPR019403 Pfam:PF10278
MGI:MGI:1914234 Reactome:REACT_127416 Reactome:REACT_27166
GO:GO:0016592 GO:GO:0001104 eggNOG:NOG264473
GeneTree:ENSGT00390000001774 HOGENOM:HOG000047323
HOVERGEN:HBG055317 KO:K15137 OrthoDB:EOG4JWVFM CTD:219541
ChiTaRS:MED19 EMBL:AK005399 EMBL:AK160579 EMBL:AK168787
EMBL:BC025475 EMBL:BC044207 EMBL:BC082559 IPI:IPI00224399
RefSeq:NP_080161.1 UniGene:Mm.219643 IntAct:Q8C1S0 STRING:Q8C1S0
PhosphoSite:Q8C1S0 PaxDb:Q8C1S0 PRIDE:Q8C1S0
Ensembl:ENSMUST00000102645 GeneID:381379 KEGG:mmu:381379
UCSC:uc008kiy.2 InParanoid:Q8C1S0 OMA:EEDPDRK NextBio:401988
Bgee:Q8C1S0 Genevestigator:Q8C1S0 Uniprot:Q8C1S0
Length = 244
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 84/163 (51%), Positives = 102/163 (62%)
Query: 37 TTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSF 96
T+ G + S SGPFYLM+E PG +E TGS NL+ Y LE YNKFCGKK+KE LS+F
Sbjct: 49 TSAPAGADKSTAGSGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNF 108
Query: 97 LPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQ 156
LP+LPG+ID PGS DNSSLRS+IEKPPI G P+T L+GFRLH G LPEQ R+ +
Sbjct: 109 LPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLSGFRLHTGPLPEQCRLMH- 167
Query: 157 VASXXXXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
+ T D P+ S SD H+KK KK+
Sbjct: 168 IQPPKKKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205
>UNIPROTKB|A0JLT2 [details] [associations]
symbol:MED19 "Mediator of RNA polymerase II transcription
subunit 19" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR019403 Pfam:PF10278 GO:GO:0005634
Reactome:REACT_111045 EMBL:CH471076 GO:GO:0016592 GO:GO:0001104
eggNOG:NOG264473 HOGENOM:HOG000047323 HOVERGEN:HBG055317 KO:K15137
OrthoDB:EOG4JWVFM CTD:219541 EMBL:BC009723 EMBL:BC037223
EMBL:AY148462 IPI:IPI00185518 IPI:IPI00217978 RefSeq:NP_703151.1
UniGene:Hs.43619 IntAct:A0JLT2 MINT:MINT-1370291 STRING:A0JLT2
PhosphoSite:A0JLT2 PaxDb:A0JLT2 PRIDE:A0JLT2
Ensembl:ENST00000337672 GeneID:219541 KEGG:hsa:219541
UCSC:uc001nla.1 UCSC:uc001nlb.3 GeneCards:GC11M057471
H-InvDB:HIX0026171 HGNC:HGNC:29600 HPA:HPA039912 HPA:HPA040860
MIM:612385 neXtProt:NX_A0JLT2 PharmGKB:PA134926032
InParanoid:A0JLT2 GenomeRNAi:219541 NextBio:90685 Bgee:A0JLT2
CleanEx:HS_MED19 Genevestigator:A0JLT2 Uniprot:A0JLT2
Length = 244
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 82/158 (51%), Positives = 98/158 (62%)
Query: 42 GKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLP 101
G + S GPFYLM+E PG +E TGS NL+ Y LE YNKFCGKK+KE LS+FLP+LP
Sbjct: 54 GADKSGAGCGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLP 113
Query: 102 GIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXX 161
G+ID PGS DNSSLRS+IEKPPI P+T LAGFRLH G LPEQ R+ + +
Sbjct: 114 GMIDLPGSHDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRLMH-IQPPK 172
Query: 162 XXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
T D P+ S SD H+KK KK+
Sbjct: 173 KKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205
>UNIPROTKB|J3KR33 [details] [associations]
symbol:MED19 "Mediator of RNA polymerase II transcription
subunit 19" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR019403 Pfam:PF10278
GO:GO:0016592 GO:GO:0001104 EMBL:AP000662 HGNC:HGNC:29600
OMA:EEDPDRK Ensembl:ENST00000431606 Uniprot:J3KR33
Length = 244
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 82/158 (51%), Positives = 98/158 (62%)
Query: 42 GKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLP 101
G + S GPFYLM+E PG +E TGS NL+ Y LE YNKFCGKK+KE LS+FLP+LP
Sbjct: 54 GADKSGAGCGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLP 113
Query: 102 GIIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYRIANQVASXX 161
G+ID PGS DNSSLRS+IEKPPI P+T LAGFRLH G LPEQ R+ + +
Sbjct: 114 GMIDLPGSHDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRLMH-IQPPK 172
Query: 162 XXXXXXXXXXXTGDTSNPDANMGDVSYSDSHEKKHKKQ 199
T D P+ S SD H+KK KK+
Sbjct: 173 KKNKHKHKQSRTQDPVPPETP----SDSD-HKKKKKKK 205
>ZFIN|ZDB-GENE-060929-232 [details] [associations]
symbol:med19a "mediator complex subunit 19a"
species:7955 "Danio rerio" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR019403
Pfam:PF10278 ZFIN:ZDB-GENE-060929-232 GO:GO:0016592 GO:GO:0001104
EMBL:BC124344 IPI:IPI00486064 RefSeq:NP_001070059.1
UniGene:Dr.68510 Ensembl:ENSDART00000054410 GeneID:767651
KEGG:dre:767651 CTD:767651 eggNOG:NOG264473
GeneTree:ENSGT00390000001774 HOGENOM:HOG000047323
HOVERGEN:HBG055317 InParanoid:Q08C81 KO:K15137 OMA:PQNQVAM
OrthoDB:EOG4JWVFM NextBio:20918045 Bgee:Q08C81 Uniprot:Q08C81
Length = 242
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 74/140 (52%), Positives = 94/140 (67%)
Query: 14 PKTSPRGSRSPIVSRQDTTGTLKTTISLGKNPSIVHSGPFYLMKEPPGKSEKTGSVNLMA 73
P S +++PI ++ G L L + P ++ PFYL++E P ++ TG+ NL+
Sbjct: 30 PPPSMPPNQAPIAAQMP--GQLGDDGPLLRKPGAMNE-PFYLLRELPVGNDLTGNTNLIT 86
Query: 74 SYGLEHTYNKFCGKKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIEKPPICGKEILPLT 133
Y LEH YNKFCGKK+KE LS+FLP LPG+ID PG QD SSLRS+IEKPP+CG PLT
Sbjct: 87 HYNLEHAYNKFCGKKVKEKLSNFLPELPGMIDCPGVQDGSSLRSLIEKPPVCGNSFSPLT 146
Query: 134 SVQLAGFRLHPGNLPEQYRI 153
L GFRLH G LPEQYR+
Sbjct: 147 GALLTGFRLHTGPLPEQYRL 166
>ZFIN|ZDB-GENE-040727-4 [details] [associations]
symbol:med19b "mediator complex subunit 19b"
species:7955 "Danio rerio" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR019403
Pfam:PF10278 ZFIN:ZDB-GENE-040727-4 GO:GO:0016592 GO:GO:0001104
GeneTree:ENSGT00390000001774 HOGENOM:HOG000047323
HOVERGEN:HBG055317 OMA:EEDPDRK EMBL:BX511158 IPI:IPI00618307
UniGene:Dr.86691 Ensembl:ENSDART00000137980 Bgee:B8A5B3
Uniprot:B8A5B3
Length = 259
Score = 343 (125.8 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 64/106 (60%), Positives = 79/106 (74%)
Query: 43 KNPSIVHSGPFYLMKEPPGKSEKTGSVNLMASYGLEHTYNKFCGKKLKESLSSFLPNLPG 102
+ P+ ++ PFYL++E P ++E TG NL+ Y LEH YNKFCGKK+KE LS+FLP LPG
Sbjct: 53 RKPAAMNE-PFYLLRELPMENELTGHTNLITHYNLEHAYNKFCGKKVKEKLSNFLPELPG 111
Query: 103 IIDAPGSQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPG-NL 147
+ID+PG QDNSSLRS+IEKPP+C PLT L GFRLH G NL
Sbjct: 112 MIDSPGIQDNSSLRSLIEKPPVCNNSFSPLTGAMLTGFRLHTGPNL 157
Score = 35 (17.4 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 147 LPEQYRI 153
LPEQYR+
Sbjct: 175 LPEQYRL 181
>WB|WBGene00007019 [details] [associations]
symbol:mdt-19 species:6239 "Caenorhabditis elegans"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR019403 Pfam:PF10278 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0040018
GO:GO:0048477 GO:GO:0040035 GO:GO:0016592 GO:GO:0001104
eggNOG:NOG264473 GeneTree:ENSGT00390000001774 KO:K15137
EMBL:FO081557 RefSeq:NP_497587.1 ProteinModelPortal:Q9N4F2
DIP:DIP-24361N IntAct:Q9N4F2 MINT:MINT-1053955 STRING:Q9N4F2
PaxDb:Q9N4F2 EnsemblMetazoa:Y71H2B.6 GeneID:175378
KEGG:cel:CELE_Y71H2B.6 UCSC:Y71H2B.6 CTD:175378 WormBase:Y71H2B.6
InParanoid:Q9N4F2 OMA:PPIHKEI NextBio:887902 Uniprot:Q9N4F2
Length = 199
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 46/104 (44%), Positives = 65/104 (62%)
Query: 52 PFYLMKE--PPGKSEKTGSVNLMASYGLEHTYNKFCG-KKLKESLSSFLPNLPGIIDAPG 108
PFY +K PP SE G+ +L+ SY L F G +++KE +SSFLP++ G
Sbjct: 21 PFYTLKALLPP-YSEIQGNHDLLMSYELGPVEGGFSGSRRVKEKISSFLPHIIGEFHLDA 79
Query: 109 SQDNSSLRSVIEKPPICGKEILPLTSVQLAGFRLHPGNLPEQYR 152
+++ SSLR++IEKPPI KEI LTS + GF+L G + E+YR
Sbjct: 80 TKEASSLRALIEKPPI-HKEISNLTSSSMQGFKLSAGPVDERYR 122
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.130 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 222 188 0.00087 110 3 11 23 0.41 33
31 0.42 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 564 (60 KB)
Total size of DFA: 145 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.89u 0.09s 18.98t Elapsed: 00:00:01
Total cpu time: 18.89u 0.09s 18.98t Elapsed: 00:00:01
Start: Thu Aug 15 16:24:57 2013 End: Thu Aug 15 16:24:58 2013