RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10479
         (222 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 34.4 bits (78), Expect = 0.016
 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 7/40 (17%)

Query: 190 DSHEKKHK-----KQKRHNDD--KERKKRKKEKKKKNRIE 222
           D+  K  +     K K+  ++  + + ++ ++ K  NRI 
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141



 Score = 26.7 bits (58), Expect = 5.7
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 148 PEQYRI-----ANQVASKRHKNKHKKHKYKTGDTSNPDANMGDVSYSDSHEKKHKKQKRH 202
           PE  R        ++      +K  + +++  + +  D    +   S+  EK +K   R 
Sbjct: 84  PESIRKWREEQRKRLQELDAASKVMEQEWR--EKAKKDLEEWNQRQSEQVEK-NKINNRI 140

Query: 203 NDDKERKKRKKE 214
            D    ++   +
Sbjct: 141 ADKAFYQQPDAD 152


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.4 bits (75), Expect = 0.028
 Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 9/34 (26%)

Query: 87  KKLKESLSSFLPNLPGIIDAPGSQDNSSLRSVIE 120
           KKL+ SL  +  +      AP      ++++ +E
Sbjct: 23  KKLQASLKLYADD-----SAPA----LAIKATME 47



 Score = 29.1 bits (64), Expect = 0.61
 Identities = 3/18 (16%), Positives = 9/18 (50%), Gaps = 4/18 (22%)

Query: 5  QYRKMEQ----YSPKTSP 18
            +K++     Y+  ++P
Sbjct: 21 ALKKLQASLKLYADDSAP 38


>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
           {Mus musculus} SCOP: a.207.1.1
          Length = 340

 Score = 28.9 bits (65), Expect = 1.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 194 KKHKKQKRHNDDKERKKRKKEKKKKNRIE 222
           K+++K++   +   R K  KEK +K R+E
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLE 338


>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
           pseudouridine synthase, guide RNA, isomerase
           biosynthetic protein-RNA complex; HET: ATP; 2.30A
           {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
          Length = 104

 Score = 25.7 bits (56), Expect = 6.3
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 175 DTSNPDANMGDVSYSDSHEKKHKKQKRHNDDKERKKRKKEKKKKNR 220
             SNP+  +G+V Y D  ++K   +K       ++KR K+KK+ NR
Sbjct: 65  KVSNPEIYVGEVLYVDERKRKESPKKN------KEKRMKKKKRLNR 104


>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
           subunit, ribosomal protein/RNA complex; 8.70A {Canis
           familiaris}
          Length = 297

 Score = 26.5 bits (58), Expect = 7.0
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 192 HEKKHKKQKRHNDDK----ERKKRKKEKKKK 218
             KK  K+KR N  K    ++K R  +KK  
Sbjct: 256 KPKKEVKKKRWNRPKMSLAQKKDRVAQKKAS 286


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.309    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,116,482
Number of extensions: 172119
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 41
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.5 bits)