BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10480
         (435 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
           Cyclopentapeptide Inhibitor Argadin Against Human
           Chitinase
 pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
           Cyclopentapeptide Inhibitor Argifin Against Human
           Chitinase
          Length = 445

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 24  GNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTF 65
            +G Y +P     FY C     +   CP+GL F +  K CT+
Sbjct: 403 ADGLYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444


>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
 pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
 pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
 pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
          Length = 507

 Score = 28.5 bits (62), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 12/43 (27%)

Query: 5   GSCQKD--------KSKDV-EFVCPD---EGGNGNYADPSTCR 35
           GSC++D        K KD+ E V P     GG   YADP+TCR
Sbjct: 395 GSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 437


>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
 pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
           Complexed With Di-Isopropyl-Phosphate (Dip)
 pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
           Complexed With 4-Guanidinobenzoic Acid
          Length = 497

 Score = 28.5 bits (62), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 12/43 (27%)

Query: 5   GSCQKD--------KSKDV-EFVCPD---EGGNGNYADPSTCR 35
           GSC++D        K KD+ E V P     GG   YADP+TCR
Sbjct: 387 GSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 429


>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
 pdb|1DLE|B Chain B, Factor B Serine Protease Domain
          Length = 298

 Score = 28.1 bits (61), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 12/43 (27%)

Query: 5   GSCQKD--------KSKDV-EFVCPD---EGGNGNYADPSTCR 35
           GSC++D        K KD+ E V P     GG   YADP+TCR
Sbjct: 188 GSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 230


>pdb|1DQC|A Chain A, Solution Structure Of Tachycitin, An Antimicrobial
          Protein With Chitin-Binding Function
          Length = 74

 Score = 28.1 bits (61), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 19 CPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARC 71
          C D+G N N     +C  FY C      +  CP GL+++   K+C + ++A C
Sbjct: 12 CLDDGPNVNLY---SCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGC 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,858,233
Number of Sequences: 62578
Number of extensions: 648334
Number of successful extensions: 1222
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 12
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)