Query psy10480
Match_columns 435
No_of_seqs 417 out of 3030
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 19:16:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03212 uraD_N-term-dom puta 100.0 3.7E-36 8E-41 295.3 20.1 222 123-384 65-294 (297)
2 PRK15394 4-deoxy-4-formamido-L 100.0 1.8E-27 3.9E-32 233.0 20.2 222 124-391 4-279 (296)
3 TIGR03006 pepcterm_polyde poly 99.9 8E-25 1.7E-29 212.0 20.5 206 136-378 29-264 (265)
4 TIGR02764 spore_ybaN_pdaB poly 99.9 5.6E-25 1.2E-29 203.7 18.4 183 121-378 5-191 (191)
5 TIGR02884 spore_pdaA delta-lac 99.9 3.4E-24 7.3E-29 203.5 18.4 185 120-377 35-223 (224)
6 TIGR02873 spore_ylxY probable 99.9 5.1E-24 1.1E-28 206.8 18.2 181 121-379 84-268 (268)
7 PF01522 Polysacc_deac_1: Poly 99.9 1.1E-22 2.3E-27 174.2 7.3 116 120-247 4-123 (123)
8 COG0726 CDA1 Predicted xylanas 99.8 3.9E-19 8.5E-24 170.6 18.8 188 122-378 65-257 (267)
9 PRK14581 hmsF outer membrane N 99.6 5.7E-15 1.2E-19 158.2 13.3 121 120-251 105-275 (672)
10 PRK14582 pgaB outer membrane N 99.6 1.1E-14 2.5E-19 156.1 13.3 119 121-250 106-274 (671)
11 PF01607 CBM_14: Chitin bindin 99.1 5.1E-11 1.1E-15 86.5 3.3 52 19-71 1-53 (53)
12 smart00494 ChtBD2 Chitin-bindi 99.0 2.7E-10 5.8E-15 83.3 5.0 54 18-72 2-55 (56)
13 PF09960 DUF2194: Uncharacteri 97.9 0.00081 1.8E-08 72.1 18.2 204 132-382 284-531 (585)
14 PF10096 DUF2334: Uncharacteri 97.8 0.00087 1.9E-08 64.6 16.3 145 125-294 3-184 (243)
15 COG3233 Predicted deacetylase 97.6 0.00051 1.1E-08 63.9 9.9 120 123-252 5-143 (233)
16 PF03065 Glyco_hydro_57: Glyco 96.2 0.0037 8.1E-08 63.6 3.5 193 169-383 113-322 (360)
17 PF11959 DUF3473: Domain of un 95.7 0.049 1.1E-06 47.5 7.8 53 324-379 62-131 (133)
18 PF15421 Polysacc_deac_3: Puta 94.4 0.34 7.4E-06 48.9 10.4 165 168-382 131-306 (425)
19 COG1449 Alpha-amylase/alpha-ma 93.5 0.69 1.5E-05 50.5 11.5 76 170-249 183-265 (615)
20 PF04748 Polysacc_deac_2: Dive 91.7 1.4 3.1E-05 41.5 9.8 175 155-379 20-213 (213)
21 KOG1958|consensus 80.2 41 0.00088 38.2 14.0 196 169-381 228-468 (1129)
22 COG2861 Uncharacterized protei 78.8 64 0.0014 31.0 14.6 197 123-379 30-245 (250)
23 PLN02701 alpha-mannosidase 67.0 1.1E+02 0.0024 35.8 14.3 79 169-250 105-186 (1050)
24 PF01074 Glyco_hydro_38: Glyco 66.3 31 0.00067 33.4 8.5 104 137-252 29-146 (275)
25 PF03427 CBM_19: Carbohydrate 53.9 12 0.00027 27.9 2.4 22 35-56 35-56 (61)
26 KOG1959|consensus 46.1 5.1E+02 0.011 29.7 15.7 75 169-244 110-187 (996)
27 cd07286 PX_SNX18 The phosphoin 36.2 37 0.0008 29.3 3.0 68 321-392 42-116 (127)
28 PF04794 YdjC: YdjC-like prote 33.9 2E+02 0.0043 27.6 8.2 95 123-225 2-127 (261)
29 cd07295 PX_Grd19 The phosphoin 32.8 58 0.0013 27.5 3.7 34 350-384 81-114 (116)
30 cd07300 PX_SNX20 The phosphoin 30.5 1.1E+02 0.0024 25.7 5.0 33 350-384 80-112 (114)
31 cd02995 PDI_a_PDI_a'_C PDIa fa 28.9 95 0.0021 24.3 4.3 51 325-375 8-59 (104)
32 COG4878 Uncharacterized protei 28.7 60 0.0013 31.7 3.4 75 157-232 34-116 (309)
33 PF02294 7kD_DNA_binding: 7kD 28.6 49 0.0011 23.8 2.0 14 120-133 25-38 (62)
34 PF12340 DUF3638: Protein of u 27.7 3.3E+02 0.0072 26.0 8.2 63 316-380 82-144 (229)
35 PF07315 DUF1462: Protein of u 27.5 2.1E+02 0.0045 23.3 5.6 53 309-366 12-64 (93)
36 PLN02291 phospho-2-dehydro-3-d 26.9 3.7E+02 0.008 28.4 8.9 87 124-215 302-400 (474)
37 cd06897 PX_SNARE The phosphoin 26.8 79 0.0017 25.9 3.5 33 350-382 74-106 (108)
38 TIGR01358 DAHP_synth_II 3-deox 26.5 4E+02 0.0086 28.0 9.0 87 124-215 282-380 (443)
39 PF13768 VWA_3: von Willebrand 25.7 2.2E+02 0.0048 24.4 6.4 56 118-180 95-150 (155)
40 cd02334 ZZ_dystrophin Zinc fin 24.1 70 0.0015 22.8 2.2 35 156-190 11-45 (49)
41 PRK02134 hypothetical protein; 23.1 6.8E+02 0.015 24.0 9.8 94 124-225 5-125 (249)
42 COG3531 Predicted protein-disu 22.7 1.6E+02 0.0035 27.5 4.9 71 170-251 20-92 (212)
43 cd06866 PX_SNX8_Mvp1p_like The 22.1 1.5E+02 0.0032 24.5 4.2 31 350-382 73-103 (105)
44 cd06879 PX_UP1_plant The phosp 21.5 1.8E+02 0.0039 25.5 4.8 30 350-381 106-135 (138)
45 COG1791 Uncharacterized conser 20.7 2.7E+02 0.0059 25.4 5.7 68 314-384 43-113 (181)
46 cd06864 PX_SNX4 The phosphoino 20.5 1.3E+02 0.0028 25.9 3.6 30 351-382 98-127 (129)
47 cd06862 PX_SNX9_18_like The ph 20.4 1.2E+02 0.0026 26.0 3.4 42 350-394 75-116 (125)
48 PF02456 Adeno_IVa2: Adenoviru 20.1 55 0.0012 32.8 1.4 33 104-138 149-181 (369)
No 1
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=100.00 E-value=3.7e-36 Score=295.32 Aligned_cols=222 Identities=14% Similarity=0.226 Sum_probs=182.4
Q ss_pred eEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEeccc--CCHHHHHHHHHcCCeeeeccccccCCCCCCCHHH
Q psy10480 123 MILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY--SDYSMIQNLANRGHEIGVETISLQDGLQDKGYEE 200 (435)
Q Consensus 123 ~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~--~~~~~v~~l~~~GhEIg~Ht~~H~~~l~~~s~e~ 200 (435)
.-.+|+-+.+...++++++++|+++ | ||||||+++.. .++++|++|+++|||||+||++|. .+..++.++
T Consensus 65 ~~~~s~~~YG~rvG~~RiLdlL~~~-----g--v~aTffv~g~~~e~~P~~v~~i~~~GHEIg~Hg~~H~-~~~~ls~~~ 136 (297)
T TIGR03212 65 MSMESLYEYGSRAGFWRLLRLFTER-----G--IPVTVFGVAMALARNPEAVAAMKEAGWEIASHGLRWI-DYQDMDEAQ 136 (297)
T ss_pred ccchhhhhhcchhCHHHHHHHHHHc-----C--CCEEEEeEHHHHHHCHHHHHHHHHcCCEEeeccccCc-ccccCCHHH
Confidence 4477899999999999999999998 7 99999999986 457999999999999999999997 577899999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccch--hhh-cCceEeeecccCCCCCCCCccccCCCCCCCccCCCC
Q psy10480 201 WVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQ--FED-FGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTC 277 (435)
Q Consensus 201 ~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~--~~~-~Gf~YDsS~~~~~~~~p~wPytld~~~~~~c~~~~c 277 (435)
++++|.++.++|++++|+ .++|||++ ..+.+++ +++ .||+|+||++.++ .|+| +...
T Consensus 137 e~~~i~~s~~~i~~~tG~---~P~G~~~~--~~s~~T~~LL~e~~Gf~Y~sd~~~dD--~Py~---~~~~---------- 196 (297)
T TIGR03212 137 EREHIAEAIRLHTEVTGE---RPLGWYTG--RTSPNTRRLVAEEGGFLYDADSYADD--LPYW---DEVA---------- 196 (297)
T ss_pred HHHHHHHHHHHHHHHhCC---CCceEECC--CCChhHHHHHHHhcCceEeCchhhcC--CCeE---eecC----------
Confidence 999999999999999885 46999975 5566664 476 9999999999864 3444 3311
Q ss_pred CCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCC---ceEEeccCccccCchHHHH
Q psy10480 278 PTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNK---APYMMPFHTNWFQIKELEQ 354 (435)
Q Consensus 278 p~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~nr---ap~~i~~H~~~~~~p~~~~ 354 (435)
...+++||+++. ++|+. +... ....++++++++|+++||.+|+..+ ..|.|.|||.++|+|+|++
T Consensus 197 ----~~~~l~lP~~~~-~nD~~-----~~~~--~~~~~~~~~~~~~~d~fd~l~~eg~~~~~~~~i~lHp~i~G~p~R~~ 264 (297)
T TIGR03212 197 ----GRPQLIVPYTLD-ANDMR-----FATP--QGFNTGEQFFTYLRDAFDVLYAEGEGAPKMMSIGLHCRLVGRPGRIA 264 (297)
T ss_pred ----CCCeEEEecccc-cCcHH-----HHhc--cCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEecCccccCCHHHHH
Confidence 113677998865 34531 1111 0125789999999999999997532 3689999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEchHHHHHHhcCC
Q psy10480 355 GLHKFLDWAAQKPDVWFVTITQALTWMTNP 384 (435)
Q Consensus 355 al~~Fl~~i~~~~dV~fvT~~ei~~w~~~P 384 (435)
+|++||+||++++||||+|.+||++|++.-
T Consensus 265 ~L~~~l~~i~~~~~VW~at~~eIA~~~~~~ 294 (297)
T TIGR03212 265 ALQRFLDYVQSHDKVWVARRIDIARHWHET 294 (297)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHh
Confidence 999999999999999999999999998643
No 2
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=99.95 E-value=1.8e-27 Score=233.01 Aligned_cols=222 Identities=15% Similarity=0.210 Sum_probs=172.0
Q ss_pred EEEEee-C--CCCCCchHHHHHHHhccCCCCCCCCcceeEEEeccc----------------------------------
Q psy10480 124 ILLTFD-G--AVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY---------------------------------- 166 (435)
Q Consensus 124 V~lTFD-D--g~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~---------------------------------- 166 (435)
|+|-.| | -+..+++++++++|+++ | |+||||.+..-
T Consensus 4 ~~l~idvdt~~~~~~g~~~~~~~~~~~-----~--~~a~f~~~~gpd~~g~~~~r~~~~~fl~k~~r~~~~~~yg~~~l~ 76 (296)
T PRK15394 4 VGLRIDVDTFRGTREGVPRLLEILSKH-----G--IQASFFFSVGPDNMGRHLWRLLKPRFLWKMLRSNAASLYGWDILL 76 (296)
T ss_pred eEEEEEeecccccccCHHHHHHHHHHc-----C--CCEEEEeccCCCchhHHHHHHhhhHHHHHHHhcCchhhcCHHHHh
Confidence 555555 2 23466799999999998 7 99999997320
Q ss_pred ------------CCHHHHHHHHHcCCeeeeccccccC---CCCCCCHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCC
Q psy10480 167 ------------SDYSMIQNLANRGHEIGVETISLQD---GLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFL 231 (435)
Q Consensus 167 ------------~~~~~v~~l~~~GhEIg~Ht~~H~~---~l~~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l 231 (435)
.++++|++++++ ||||+|||+|.. .+..++.+++++||.++.++|++++|. .++|||+|++
T Consensus 77 ~g~~~PG~~I~~~~P~lvr~i~~~-HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~---~p~g~raPgw 152 (296)
T PRK15394 77 AGTAWPGKEIGKALADIIREAAKA-HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQ---PVTCSAAAGW 152 (296)
T ss_pred hcccCCCchHHHHCHHHHHHHHhc-CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCC---CCCEEeCCCc
Confidence 046999999999 999999999973 245689999999999999999998885 4699999999
Q ss_pred CCCccch--hhhcCceEeeecccCCCCCCCCccccCCCCCCCccCCCCCCCCCCceEEEccccccccccCCCCccCCCcc
Q psy10480 232 LPGRNTQ--FEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQC 309 (435)
Q Consensus 232 ~~~~~~~--~~~~Gf~YDsS~~~~~~~~p~wPytld~~~~~~c~~~~cp~~~~pglweiP~~~~~~~~~~~~~~~~~d~~ 309 (435)
..+.+++ +++.||.||||+..+ .|+||.+-+ ...+++|||++... +|.. ..
T Consensus 153 ~~~~~tl~ll~e~Gf~Y~Ss~~~d---~Py~~~~~~---------------g~~~~veIP~tl~t-~D~~-----~g--- 205 (296)
T PRK15394 153 RADQRVVEAKEAFGFRYNSDCRGT---HPFRPLLPD---------------GSLGTVQIPVTLPT-WDEV-----IG--- 205 (296)
T ss_pred cCCHHHHHHHHHcCCeeecCCCCC---CceeeecCC---------------CcCCeEEEcccccc-chhh-----hc---
Confidence 9998876 399999999998763 566654322 11269999998642 2321 01
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCceEEeccCccccCchHHHHHHHHHHHHHhcCCCEEEEchHHHHHHhcCCcchhh
Q psy10480 310 VLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKSSKE 389 (435)
Q Consensus 310 ~~~~~~~~~~~~~l~~~fd~~y~~nrap~~i~~H~~~~~~p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~~~P~~~~~ 389 (435)
...+++++.+++++.|++ ..+.+ ++++||...|.+ ++.+|+++|+++++. +|||+|++|++.-.++..|+-+
T Consensus 206 --~~~~~~~f~~~~~d~~~~---~~g~~-V~tiHP~v~G~~-~~~~fe~lL~~~~~~-gv~F~tl~el~~~~~~~~p~~~ 277 (296)
T PRK15394 206 --RDVKAEDFNDFILDRILR---DKGTP-VYTIHAEVEGIA-YAHNFEDLLKRAAQE-GITFCPLSELLPDDLETLPLGK 277 (296)
T ss_pred --CCCCHHHHHHHHHHHhcc---ccCce-EEEECCCcCCcc-hHHHHHHHHHHHhcC-CcEEeeHHHHHhhchhhCCccc
Confidence 235688999999887765 22334 899999999999 899999999999995 6999999999975556666655
Q ss_pred hc
Q psy10480 390 LL 391 (435)
Q Consensus 390 ~~ 391 (435)
+.
T Consensus 278 ~~ 279 (296)
T PRK15394 278 VV 279 (296)
T ss_pred ee
Confidence 53
No 3
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=99.93 E-value=8e-25 Score=211.98 Aligned_cols=206 Identities=17% Similarity=0.260 Sum_probs=143.8
Q ss_pred chHHHHHHHhccCCCCCCCCcceeEEEecccC--CHHHHHHHHHcCCeeeeccccccCCCCCCCHHHHHHHHHHHHHHHH
Q psy10480 136 NYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILH 213 (435)
Q Consensus 136 ~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~--~~~~v~~l~~~GhEIg~Ht~~H~~~l~~~s~e~~~~Ei~~~r~~l~ 213 (435)
++.+++++|+++ | +||||||++... .+++|++|+++|||||+||++|. .+..++.+++++||.+++++|+
T Consensus 29 nt~riL~lL~~~-----g--ikATFFv~g~~~e~~p~lir~i~~~GhEIgsHg~sH~-~l~~ls~ee~~~eI~~s~~~Le 100 (265)
T TIGR03006 29 NTDRILDLLDRH-----G--VKATFFTLGWVAERYPELVRRIVAAGHELASHGYGHE-RVTTQTPEAFRADIRRSKALLE 100 (265)
T ss_pred hHHHHHHHHHHc-----C--CcEEEEEeccchhhCHHHHHHHHHcCCEeeeccccCc-CchhCCHHHHHHHHHHHHHHHH
Confidence 588999999998 7 999999999864 35999999999999999999997 5788999999999999999999
Q ss_pred HhccCCCCCceEeccCCCCCCccc-----hhhhcCceEeeecc---cCC---CCCCCCccccCCCCCCCccCCCCCCCCC
Q psy10480 214 HFANITRSDIVGMRAPFLLPGRNT-----QFEDFGFIYDSSVS---VPA---LKFPVWPYTLDHKIPHECKSGTCPTKSF 282 (435)
Q Consensus 214 ~~~gi~~~~i~G~R~P~l~~~~~~-----~~~~~Gf~YDsS~~---~~~---~~~p~wPytld~~~~~~c~~~~cp~~~~ 282 (435)
+++|. .++|||+|++..+..+ ++++.||.||||+. .+. .+.|.+||... .
T Consensus 101 ~itG~---~~~gfRaP~~s~~~~t~~a~~iL~e~Gy~YdsS~~p~~~d~~g~~~~~~~p~~~~----------------~ 161 (265)
T TIGR03006 101 DLSGQ---PVRGYRAPSFSIGKKNLWALDVLAEAGYRYSSSIYPVRHDHYGMPDAPRFPFRPP----------------N 161 (265)
T ss_pred HHhCC---CceEEECCCCCCCCCcHHHHHHHHHCCCEEEEeeccCcCCcCCCCCCCCCceecC----------------C
Confidence 98874 5799999999888765 24999999999995 211 02233555432 1
Q ss_pred CceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCCceEEeccCccccCc--hH---------
Q psy10480 283 PGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQI--KE--------- 351 (435)
Q Consensus 283 pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~nrap~~i~~H~~~~~~--p~--------- 351 (435)
.+|||||+++....+. ..+....- +...-+-.+++++.... .+.++.|+++||||+.+.. |.
T Consensus 162 g~l~e~P~s~~~~~~~---~~p~~gg~-~~r~~P~~~~~~~~~~~---~~~~~~~~~~y~Hpwe~dp~~~~~~~~~~~~~ 234 (265)
T TIGR03006 162 GRLLEVPVTTVRLGGR---NLPAAGGG-YFRLLPYALSRWALRRV---NGREGRPAIFYFHPWEIDPDQPRIAGISMKSR 234 (265)
T ss_pred CcEEEEccchhhhccc---ccccCCCc-chhcChHHHHHHHHHHH---HhcCCceEEEEEchhhcCCCCCCCCCCCccce
Confidence 1399999987432211 11111100 01133444555444433 3334689999999998842 21
Q ss_pred ------HHHHHHHHHHHHhcCCCEEEEchHHHH
Q psy10480 352 ------LEQGLHKFLDWAAQKPDVWFVTITQAL 378 (435)
Q Consensus 352 ------~~~al~~Fl~~i~~~~dV~fvT~~ei~ 378 (435)
.-.+..| |+.++ .|.-|+|++|++
T Consensus 235 fr~y~~~~~~~~~-l~~ll--~~~~~~~~~~~~ 264 (265)
T TIGR03006 235 FRHYLNLDRMEGR-LRRLL--GDFRWGRMDRVF 264 (265)
T ss_pred eeeecCHHHHHHH-HHHHH--hcCceeeHHHhh
Confidence 1122222 33333 578999999986
No 4
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=99.93 E-value=5.6e-25 Score=203.69 Aligned_cols=183 Identities=18% Similarity=0.311 Sum_probs=142.0
Q ss_pred CCeEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecccC--CHHHHHHHHHcCCeeeeccccccCCCCCCCH
Q psy10480 121 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQDKGY 198 (435)
Q Consensus 121 Pq~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~--~~~~v~~l~~~GhEIg~Ht~~H~~~l~~~s~ 198 (435)
.+.|+||||||+....+.+++++|+++ | +||||||++... +++++++|+++|||||+||++|. .+..++.
T Consensus 5 ~k~V~LTFDDgp~~~~t~~~l~~L~~~-----~--ikaTfFv~g~~~~~~~~~~~~i~~~Gheig~Ht~~H~-~~~~~~~ 76 (191)
T TIGR02764 5 DKKIALTFDISWGNDYTEPILDTLKEY-----D--VKATFFLSGSWAERHPELVKEIVKDGHEIGSHGYRHK-NYTTLED 76 (191)
T ss_pred CCEEEEEEECCCCcccHHHHHHHHHHc-----C--CCEEEEeccHHHHHCHHHHHHHHhCCCEEEECCcCCC-CcccCCH
Confidence 568999999999987778899999997 7 999999999864 46999999999999999999997 5788999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccch--hhhcCceEeeecccCCCCCCCCccccCCCCCCCccCCC
Q psy10480 199 EEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQ--FEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGT 276 (435)
Q Consensus 199 e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~--~~~~Gf~YDsS~~~~~~~~p~wPytld~~~~~~c~~~~ 276 (435)
+++++||..+.++|++.+|.. +++||+||+..+...+ +++.||.+-. | +.|.
T Consensus 77 ~~~~~ei~~~~~~l~~~~g~~---~~~fr~P~G~~~~~~~~~l~~~G~~~v~-----------w--~~~~---------- 130 (191)
T TIGR02764 77 EKIKKDILRAQEIIEKLTGKK---PTLFRPPSGAFNKAVLKAAESLGYTVVH-----------W--SVDS---------- 130 (191)
T ss_pred HHHHHHHHHHHHHHHHHhCCC---CCEEECCCcCCCHHHHHHHHHcCCeEEE-----------e--cCCC----------
Confidence 999999999999999988854 5899999999887655 3888887421 1 1110
Q ss_pred CCCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCCceEEeccCccccCchHHHHHH
Q psy10480 277 CPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGL 356 (435)
Q Consensus 277 cp~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~nrap~~i~~H~~~~~~p~~~~al 356 (435)
. |. ...+++++++.+.++. .++ -+|.+|.. -..+...++|
T Consensus 131 --------------~-----D~-------------~~~~~~~i~~~~~~~~-----~~g--~Iil~Hd~-~~~~~t~~~l 170 (191)
T TIGR02764 131 --------------R-----DW-------------KNPGVESIVDRVVKNT-----KPG--DIILLHAS-DSAKQTVKAL 170 (191)
T ss_pred --------------C-----cc-------------CCCCHHHHHHHHHhcC-----CCC--CEEEEeCC-CCcHhHHHHH
Confidence 0 11 0124455555544332 122 37789962 1235568999
Q ss_pred HHHHHHHhcCCCEEEEchHHHH
Q psy10480 357 HKFLDWAAQKPDVWFVTITQAL 378 (435)
Q Consensus 357 ~~Fl~~i~~~~dV~fvT~~ei~ 378 (435)
.++|++++++ ++.|||.+|++
T Consensus 171 ~~~i~~l~~~-Gy~~vtl~~l~ 191 (191)
T TIGR02764 171 PTIIKKLKEK-GYEFVTISELI 191 (191)
T ss_pred HHHHHHHHHC-CCEEEEHHHhC
Confidence 9999999998 99999999874
No 5
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=99.92 E-value=3.4e-24 Score=203.47 Aligned_cols=185 Identities=16% Similarity=0.294 Sum_probs=140.3
Q ss_pred CCCeEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecccC--CHHHHHHHHHcCCeeeeccccccCCCCCCC
Q psy10480 120 TPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQDKG 197 (435)
Q Consensus 120 ~Pq~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~--~~~~v~~l~~~GhEIg~Ht~~H~~~l~~~s 197 (435)
..+.|+||||||+.....++++++|+++ | ++|||||++.+. +.+++++|+++|||||+||++|. .+..++
T Consensus 35 ~~k~VaLTFDDGp~~~~t~~lL~~L~~~-----~--vkATFFv~G~~~~~~p~~ir~i~~~GheIgnHt~~H~-~~~~ls 106 (224)
T TIGR02884 35 SKKVIYLTFDNGYENGYTPKILDVLKEK-----K--VPAAFFVTGHYIKTQPDLIKRMVDEGHIVGNHSVHHP-SLTAVN 106 (224)
T ss_pred CCCEEEEEEECCCCccchHHHHHHHHHc-----C--CCeEEEeechhhHHCHHHHHHHHHcCCEeeecCccCc-CcccCC
Confidence 3578999999999877778899999998 7 999999999864 46999999999999999999997 578899
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccch--hhhcCceEeeecccCCCCCCCCccccCCCCCCCccCC
Q psy10480 198 YEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQ--FEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSG 275 (435)
Q Consensus 198 ~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~--~~~~Gf~YDsS~~~~~~~~p~wPytld~~~~~~c~~~ 275 (435)
.+++++||.+++++|++.+|.. .+..||+||+.++..++ +++.||.+-. | +++
T Consensus 107 ~~~~~~ei~~~~~~i~~~~G~~--~~~~fR~P~G~~~~~~~~~l~~~Gy~~v~-----------w--~v~---------- 161 (224)
T TIGR02884 107 DEKFKEELTGVEEEFKKVTGQK--EMKYFRPPRGVFSERTLAYTKELGYYTVF-----------W--SLA---------- 161 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--CCCEEeCCCCCcCHHHHHHHHHcCCcEEe-----------c--ccc----------
Confidence 9999999999999999998854 25789999999887664 3888987521 2 111
Q ss_pred CCCCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCCceEEeccCccccCchHHHHH
Q psy10480 276 TCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQG 355 (435)
Q Consensus 276 ~cp~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~nrap~~i~~H~~~~~~p~~~~a 355 (435)
..+|. .+ ...+++.+++.+.++ -+..-+|.||.. .+...++
T Consensus 162 --------------~~Dw~-----------~~----~~~~~~~~~~~v~~~-------~~~g~IiLlHd~---~~~t~~a 202 (224)
T TIGR02884 162 --------------FKDWK-----------VD----EQPGWQYAYKQIMKK-------IHPGAILLLHAV---SKDNAEA 202 (224)
T ss_pred --------------CcccC-----------CC----CCCCHHHHHHHHHhc-------CCCCcEEEEECC---CCCHHHH
Confidence 00110 00 011233444444322 122357788963 2346889
Q ss_pred HHHHHHHHhcCCCEEEEchHHH
Q psy10480 356 LHKFLDWAAQKPDVWFVTITQA 377 (435)
Q Consensus 356 l~~Fl~~i~~~~dV~fvT~~ei 377 (435)
|.++|++++++ ++.|||.+|+
T Consensus 203 L~~ii~~lk~~-Gy~fvtl~el 223 (224)
T TIGR02884 203 LDKIIKDLKEQ-GYTFKSLDDL 223 (224)
T ss_pred HHHHHHHHHHC-CCEEEEhHHc
Confidence 99999999998 9999999986
No 6
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=99.92 E-value=5.1e-24 Score=206.79 Aligned_cols=181 Identities=18% Similarity=0.235 Sum_probs=140.7
Q ss_pred CCeEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecccC--CHHHHHHHHHcCCeeeeccccccCCCCCCCH
Q psy10480 121 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQDKGY 198 (435)
Q Consensus 121 Pq~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~--~~~~v~~l~~~GhEIg~Ht~~H~~~l~~~s~ 198 (435)
.++|+||||||+....+++++++|+++ | ++|||||+|.+. +.+++++|+++|||||+||++|. .+..++.
T Consensus 84 ~k~VaLTFDdg~~~~~t~~iL~iLkk~-----~--vkATFFv~G~~i~~~p~l~k~i~~~GheIGnHT~sH~-~l~~ls~ 155 (268)
T TIGR02873 84 KPMVALLINVAWGNEYLPEILQILKKH-----D--VKATFFLEGKWVKENSQLAKMIVEQGHEIGNHAYNHP-DMATLSK 155 (268)
T ss_pred CCEEEEEEeCCCCcchHHHHHHHHHHC-----C--CCEEEEeehHhhhHCHHHHHHHHHCCCEEEecCCcCC-CcccCCH
Confidence 468999999999988888999999998 7 999999999864 46999999999999999999997 5788999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccchh--hhcCceEeeecccCCCCCCCCccccCCCCCCCccCCC
Q psy10480 199 EEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQF--EDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGT 276 (435)
Q Consensus 199 e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~~--~~~Gf~YDsS~~~~~~~~p~wPytld~~~~~~c~~~~ 276 (435)
+++++||.++.++|++.+|. .++.||+|||.++...+. ++.||..- . | +.|
T Consensus 156 ~~~~~Ei~~~~~~i~~~~G~---~p~~fRpP~G~~n~~~~~~l~~~G~~~v-~----------W--svd----------- 208 (268)
T TIGR02873 156 EEIYDQINQTNEIIEATIGV---TPKWFAPPSGSFNDNVVQIAADLQMGTI-M----------W--TVD----------- 208 (268)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CCCEEECCCCCCCHHHHHHHHHCCCeEE-E----------e--ccC-----------
Confidence 99999999999999999885 457999999998876543 78888531 1 2 111
Q ss_pred CCCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCCceEEeccCccccCchHHHHHH
Q psy10480 277 CPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGL 356 (435)
Q Consensus 277 cp~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~nrap~~i~~H~~~~~~p~~~~al 356 (435)
-. |+ ...+++++.+.+.++ . .++ -+|.+|.. ....++|
T Consensus 209 -------------~~-----Dw-------------~~~~~~~i~~~v~~~----~-~~G--~IILmHd~----~~T~~aL 246 (268)
T TIGR02873 209 -------------TI-----DW-------------KNPSPSVMVNRVLSK----I-HPG--AMVLMHPT----ASSTEGL 246 (268)
T ss_pred -------------CC-----CC-------------CCCCHHHHHHHHHhc----C-CCC--cEEEEcCC----ccHHHHH
Confidence 00 11 012445555544432 1 123 36788964 2357899
Q ss_pred HHHHHHHhcCCCEEEEchHHHHH
Q psy10480 357 HKFLDWAAQKPDVWFVTITQALT 379 (435)
Q Consensus 357 ~~Fl~~i~~~~dV~fvT~~ei~~ 379 (435)
.++|++++++ ++.|||.+|+++
T Consensus 247 ~~iI~~Lk~k-Gy~fvtl~ell~ 268 (268)
T TIGR02873 247 EEMITIIKEK-GYKIGTITELLD 268 (268)
T ss_pred HHHHHHHHHC-CCEEEeHHHhhC
Confidence 9999999998 999999999863
No 7
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=99.87 E-value=1.1e-22 Score=174.15 Aligned_cols=116 Identities=31% Similarity=0.445 Sum_probs=95.9
Q ss_pred CCCeEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecccCC--HHHHHHHHHcCCeeeeccccccCCCCCCC
Q psy10480 120 TPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSD--YSMIQNLANRGHEIGVETISLQDGLQDKG 197 (435)
Q Consensus 120 ~Pq~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~~--~~~v~~l~~~GhEIg~Ht~~H~~~l~~~s 197 (435)
.++.|+||||||+... +.+++++|+++ | ++|||||++.+.. ++++++|.++|||||+||++|. .+..++
T Consensus 4 ~~~~v~ltfDdg~~~~-~~~~~~~l~~~-----~--i~at~fv~~~~~~~~~~~l~~l~~~G~ei~~H~~~H~-~~~~~~ 74 (123)
T PF01522_consen 4 PKKSVALTFDDGYRDN-YDRLLPLLKKY-----G--IPATFFVIGSWVERYPDQLRELAAAGHEIGNHGWSHP-NLSTLS 74 (123)
T ss_dssp TSSEEEEEEESHCHTH-HHHHHHHHHHT-----T----EEEEE-HHHHHHHHHHHHHHHHTT-EEEEE-SSSS-CGGGS-
T ss_pred CCCEEEEEEecCchhh-HHHHHHHHHhc-----c--cceeeeecccccccccccchhHHHHHHHHHhcCCccc-ccccCC
Confidence 4689999999999544 78889999997 7 9999999998643 4999999999999999999997 578899
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccch--hhhcCceEe
Q psy10480 198 YEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQ--FEDFGFIYD 247 (435)
Q Consensus 198 ~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~--~~~~Gf~YD 247 (435)
.+++++||.++++.|++.+|. .+.+||+|++..+.+++ ++++||.||
T Consensus 75 ~~~~~~ei~~~~~~l~~~~g~---~~~~f~~P~g~~~~~~~~~l~~~G~~y~ 123 (123)
T PF01522_consen 75 PEELRREIERSREILEEITGR---PPKGFRYPFGSYDDNTLQALREAGYKYD 123 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS---EESEEE-GGGEECHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHHHHHHhCC---CCcEEECCCCCCCHHHHHHHHHcCCCcC
Confidence 999999999999999999885 56899999999988875 399999997
No 8
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=3.9e-19 Score=170.64 Aligned_cols=188 Identities=22% Similarity=0.355 Sum_probs=137.7
Q ss_pred CeEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecccC--CHHHHHHHHHcCCeeeeccccccCCCCCCCHH
Q psy10480 122 QMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS--DYSMIQNLANRGHEIGVETISLQDGLQDKGYE 199 (435)
Q Consensus 122 q~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~--~~~~v~~l~~~GhEIg~Ht~~H~~~l~~~s~e 199 (435)
+.|+||||||+.+.++++++++|+++ | ++|||||++.+. ..++++++.++|||||+||++|. .+..++.+
T Consensus 65 k~v~lTFDDg~~~~~~~~il~iL~k~-----~--i~ATfFv~g~~i~~~p~~~~~~~~~Gheig~H~~~h~-~~~~~~~~ 136 (267)
T COG0726 65 KAVALTFDDGPLDGNTPRILPLLKKY-----G--IKATFFVVGSWIERNPDLVKRIAEAGHEIGNHGYDHP-DLQDLSLE 136 (267)
T ss_pred CeEEEEeecCCCCCCcHHHHHHHHHc-----C--CceEEEEehHhhHHCHHHHHHHHhccCeehhCcccCC-CcccCCHH
Confidence 78999999999996789999999998 7 999999999864 35999999999999999999997 57889999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccchh--hhcCceEeeecccCCCCCCCCccccCCCCCCCccCCCC
Q psy10480 200 EWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQF--EDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTC 277 (435)
Q Consensus 200 ~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~~--~~~Gf~YDsS~~~~~~~~p~wPytld~~~~~~c~~~~c 277 (435)
++.+||..+...|.+.+|.. +++||+|++..+..... ++.|+. . ..|
T Consensus 137 ~~~~~i~~~~~~l~~~~g~~---~~~~r~p~g~~~~~~~~~~~~~g~~-----~-------~v~---------------- 185 (267)
T COG0726 137 ELGAEIARAHDILKKITGGR---PRGFRPPYGSYNESSLALARRLGYR-----A-------EIP---------------- 185 (267)
T ss_pred HHHHHHHHHHHHHHHHhCCC---CceEECCCCccCHHHHHHHHhCCCc-----e-------Eee----------------
Confidence 99999999999999988754 78999999998755432 666663 0 000
Q ss_pred CCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCCceEEeccCccccC-chHHHHHH
Q psy10480 278 PTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQ-IKELEQGL 356 (435)
Q Consensus 278 p~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~nrap~~i~~H~~~~~-~p~~~~al 356 (435)
|.+... ++..+ .. .......++..+..+...+++.+|..... .+....+|
T Consensus 186 --------~~~~~~-----d~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~iil~h~~~~~~~~~~~~~l 236 (267)
T COG0726 186 --------WTVDTF-----DWPYG-----------TA-----LGYNKDAIDILYKEGYKGAIILLHDRASPDRPGTVEAL 236 (267)
T ss_pred --------eeeccc-----cccCC-----------cc-----cchhHHHHHHHhhcCCCceEEEecCCCCCCchhHHHHH
Confidence 111000 00000 00 00111112222222224578999998775 77889999
Q ss_pred HHHHHHHhcCCCEEEEchHHHH
Q psy10480 357 HKFLDWAAQKPDVWFVTITQAL 378 (435)
Q Consensus 357 ~~Fl~~i~~~~dV~fvT~~ei~ 378 (435)
.++|..++++ +..|+|..++.
T Consensus 237 ~~~i~~~~~~-g~~~~~~~~~~ 257 (267)
T COG0726 237 PRLIPYLKAK-GYVFVTLDELI 257 (267)
T ss_pred HHHHHHHHHC-CcEEEEchHhh
Confidence 9999999999 56677776654
No 9
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=99.60 E-value=5.7e-15 Score=158.15 Aligned_cols=121 Identities=13% Similarity=0.213 Sum_probs=96.2
Q ss_pred CCCeEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEeccc---------------------CCHHHHHHHHHc
Q psy10480 120 TPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEY---------------------SDYSMIQNLANR 178 (435)
Q Consensus 120 ~Pq~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~---------------------~~~~~v~~l~~~ 178 (435)
.++.|+||||||+.+. +..+++||+++ | ++||||+++.+ .+|++|++|.+.
T Consensus 105 P~KaV~LTFDDGy~sn-y~~AlPILKky-----g--~pATfFvVg~wid~~~~~~v~~~~~~~~r~~~LTW~qIrEM~~s 176 (672)
T PRK14581 105 PDKAVLLTFDDGYSSF-YRRVYPLLKAY-----K--WSAVLAPVGTWIDTATDKKVDFGGLSTDRDRFATWKQITEMSKS 176 (672)
T ss_pred CCCeEEEEEEcCCcch-HHHHHHHHHHc-----C--CCEEEEEechhhccCcccccccccccccccccCCHHHHHHHHHC
Confidence 3678999999999974 77888999998 7 99999998643 256799999999
Q ss_pred C-CeeeeccccccCCC-CC---------------------CC----HHHHHHHHHHHHHHHHHhccCCCCCceEeccCCC
Q psy10480 179 G-HEIGVETISLQDGL-QD---------------------KG----YEEWVGEMIGMREILHHFANITRSDIVGMRAPFL 231 (435)
Q Consensus 179 G-hEIg~Ht~~H~~~l-~~---------------------~s----~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l 231 (435)
| ||||+||++|.... .+ .+ .+++++||.++++.|++.+|. .++.|+.|||
T Consensus 177 GLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~---~p~~FayPyG 253 (672)
T PRK14581 177 GLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGK---QPRVWVWPYG 253 (672)
T ss_pred CCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEcCCC
Confidence 9 69999999985211 00 01 134678899999999998885 4578999999
Q ss_pred CCCccch--hhhcCceEeeecc
Q psy10480 232 LPGRNTQ--FEDFGFIYDSSVS 251 (435)
Q Consensus 232 ~~~~~~~--~~~~Gf~YDsS~~ 251 (435)
.++.... +++.||.+..+..
T Consensus 254 ~yn~~~~~iak~aGy~~afTt~ 275 (672)
T PRK14581 254 APNGTVLNILRQHGYQLAMTLD 275 (672)
T ss_pred CcCHHHHHHHHHCCCcEEEECC
Confidence 9987665 3999999877754
No 10
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=99.58 E-value=1.1e-14 Score=156.05 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=94.7
Q ss_pred CCeEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecccC---------------------CHHHHHHHHHcC
Q psy10480 121 PQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS---------------------DYSMIQNLANRG 179 (435)
Q Consensus 121 Pq~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~---------------------~~~~v~~l~~~G 179 (435)
++.|+||||||+.+. +..+++||+++ | ++||||+++.+. +|++|++|.+.|
T Consensus 106 ~K~VaLTFDDGy~s~-yt~A~PILkky-----g--vpATfFlvg~wi~~~~~~~~~~~~~~~~r~~~LtWeqIreM~~sG 177 (671)
T PRK14582 106 EKAVLLTFDDGYSSF-YTRVFPILQAF-----Q--WPAVWAPVGSWVDTPADQPVKFGGEMVPREYFATWQQVREVARSR 177 (671)
T ss_pred CCeEEEEEEcCCCch-HHHHHHHHHHc-----C--CCEEEEEechhhccCccccccccccccccccCCCHHHHHHHHhCC
Confidence 578999999999876 56788999998 7 999999987542 457999999999
Q ss_pred -Ceeeeccc-cccCCCC---------------------CCCH----HHHHHHHHHHHHHHHHhccCCCCCceEeccCCCC
Q psy10480 180 -HEIGVETI-SLQDGLQ---------------------DKGY----EEWVGEMIGMREILHHFANITRSDIVGMRAPFLL 232 (435)
Q Consensus 180 -hEIg~Ht~-~H~~~l~---------------------~~s~----e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~ 232 (435)
||||+||+ +|..... ..+. +++++||.++++.|++.+|.+ ++.||.|||.
T Consensus 178 lvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~---p~~FayPyG~ 254 (671)
T PRK14582 178 LVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKN---PRVWVWPYGE 254 (671)
T ss_pred CeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC---CcEEecCCCC
Confidence 69999998 5852110 0122 346789999999999998854 5789999999
Q ss_pred CCccchh--hhcCceEeeec
Q psy10480 233 PGRNTQF--EDFGFIYDSSV 250 (435)
Q Consensus 233 ~~~~~~~--~~~Gf~YDsS~ 250 (435)
++...+. ++.||.+..+.
T Consensus 255 ~n~~~~~iakeaGY~~afT~ 274 (671)
T PRK14582 255 ANGIALEELKKLGYDMAFTL 274 (671)
T ss_pred CCHHHHHHHHHCCCeEEEEe
Confidence 9876653 89999987774
No 11
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.10 E-value=5.1e-11 Score=86.52 Aligned_cols=52 Identities=40% Similarity=1.047 Sum_probs=37.9
Q ss_pred CCCCCCCCcccCCcCCcccEEeCCCceeeEcCCCCceEcCCcCccccccC-Ccc
Q psy10480 19 CPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNE-ARC 71 (435)
Q Consensus 19 C~~~~~~G~~~~p~~C~~y~~C~~g~~~~~~Cp~Gl~Fd~~~~~C~~~~~-v~C 71 (435)
|++. .+|+++++.+|++||+|.+|.+..++||.|++||+.++.|+++.. +.|
T Consensus 1 C~~~-~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 1 CPGR-GDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp -----SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred CCcc-CCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 4442 569999999999999999999999999999999999999999998 666
No 12
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=99.04 E-value=2.7e-10 Score=83.35 Aligned_cols=54 Identities=39% Similarity=1.057 Sum_probs=49.5
Q ss_pred CCCCCCCCCcccCCcCCcccEEeCCCceeeEcCCCCceEcCCcCccccccCCccc
Q psy10480 18 VCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCG 72 (435)
Q Consensus 18 ~C~~~~~~G~~~~p~~C~~y~~C~~g~~~~~~Cp~Gl~Fd~~~~~C~~~~~v~C~ 72 (435)
.|.. ...|+++|+.+|++||+|.+|..+.+.||.|++||..++.|+++..+.|.
T Consensus 2 ~C~~-~~~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~C~ 55 (56)
T smart00494 2 ECPG-RGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVGCG 55 (56)
T ss_pred cCCC-CCCccccCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCCCC
Confidence 3666 35699999999999999999999999999999999999999999998886
No 13
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=97.86 E-value=0.00081 Score=72.12 Aligned_cols=204 Identities=17% Similarity=0.214 Sum_probs=126.0
Q ss_pred CCCCchHHHHHHHhccCCCCCCCCcceeEEEecccC----------------CH-HHHHHHHHcCCeeeeccccccCCC-
Q psy10480 132 VNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS----------------DY-SMIQNLANRGHEIGVETISLQDGL- 193 (435)
Q Consensus 132 ~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~----------------~~-~~v~~l~~~GhEIg~Ht~~H~~~l- 193 (435)
..+.-|+.|+++-+++ | +|-|-++...|. +. -..++|.+.|+|||.|||.|. +|
T Consensus 284 Y~~IWWpDM~~la~~y-----~--ikyTg~~I~~Y~~~~~~pf~~~~~~~~~~~~~~g~~Ll~~ggElG~HGYNHq-pL~ 355 (585)
T PF09960_consen 284 YRKIWWPDMKKLAKKY-----G--IKYTGVMIENYNDQTNPPFEFLEQEDTDRFIYFGRELLKSGGELGLHGYNHQ-PLT 355 (585)
T ss_pred HHhcccHHHHHHHHHc-----C--CeEEEEEccccCCCCCCCcccccccchhhHHHHHHHHHhcCCceEEecccCC-CCc
Confidence 3344478888988887 7 999999987652 11 456999999999999999998 44
Q ss_pred -CC----------C-CHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccch--h-hhc-CceEeeecccCCCCC
Q psy10480 194 -QD----------K-GYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQ--F-EDF-GFIYDSSVSVPALKF 257 (435)
Q Consensus 194 -~~----------~-s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~--~-~~~-Gf~YDsS~~~~~~~~ 257 (435)
.+ + +++++.+-+...++.++++ + +...++-+=+|.=-.+.... + +.. .+..-+|+...+..
T Consensus 356 ~~~~~~~~~~Y~~W~~~~~m~~sl~~l~~f~~~l-~-p~~~~~~YVPPSNils~eG~e~L~~~~P~ik~IaS~Y~~~~~- 432 (585)
T PF09960_consen 356 LEGDYGDEYGYKPWPSKEDMAESLKELKRFVKSL-F-PNYEPSSYVPPSNILSEEGREALKKAFPEIKTIASLYFGDDE- 432 (585)
T ss_pred CCCcccccccCcCCCCHHHHHHHHHHHHHHHHHh-C-CCcceEEecCCccccCHHHHHHHHHhCCCeEEEEEeeecCCc-
Confidence 33 4 5666666666666666663 2 44566777788644443322 2 222 35566666543211
Q ss_pred CCCccccCCCCCCCccCCCCCCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCCce
Q psy10480 258 PVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAP 337 (435)
Q Consensus 258 p~wPytld~~~~~~c~~~~cp~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~nrap 337 (435)
.-+|.-+++.. ..|+.|+|=.+. ++ +. + +. .+...+...- +=.-
T Consensus 433 -~~~y~QEF~~~------------~dgi~e~PRisS---G~------~~--------~--~~--~~~~~~s~l~--~~Gv 476 (585)
T PF09960_consen 433 -EGEYVQEFEIA------------PDGIVEFPRISS---GY------YP--------D--DY--MLWAIVSALN--NHGV 476 (585)
T ss_pred -CCcceEEeeEC------------CCCeEEeCcccc---CC------cc--------C--hH--HHHHHHHHHH--hhee
Confidence 11454454421 248999986531 11 01 1 11 2223333321 1235
Q ss_pred EEeccCccccCc---------hHHHHHHHHHHHHHhc-CCCEEEEchHHHHHHhc
Q psy10480 338 YMMPFHTNWFQI---------KELEQGLHKFLDWAAQ-KPDVWFVTITQALTWMT 382 (435)
Q Consensus 338 ~~i~~H~~~~~~---------p~~~~al~~Fl~~i~~-~~dV~fvT~~ei~~w~~ 382 (435)
+.-.+||.-+=. ....+.|++|++++.+ .|-....|.+|.+.-++
T Consensus 477 ~sHFiHPDDvld~dR~~~~~W~~l~~~l~~~~~~i~~~~P~Lr~~T~Se~~~~~~ 531 (585)
T PF09960_consen 477 FSHFIHPDDVLDEDRNAGKGWEELYKSLDKFMSWIKESYPWLRNLTASEAAGALQ 531 (585)
T ss_pred eecccCCccccccccCCCCCHHHHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHH
Confidence 777889864321 2457889999999986 58999999999987664
No 14
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=97.83 E-value=0.00087 Score=64.55 Aligned_cols=145 Identities=21% Similarity=0.314 Sum_probs=90.1
Q ss_pred EEEeeCCCCCCchHH---HHHHHhccCCCCCCCCcceeEEEeccc--------------CCH-HHHHHHHHcCCeeeecc
Q psy10480 125 LLTFDGAVNLNNYDH---YQKVFSDSRKNPNGCPMKGTFFISHEY--------------SDY-SMIQNLANRGHEIGVET 186 (435)
Q Consensus 125 ~lTFDDg~~~~~~~~---~~~il~~~r~n~~gc~i~aTFFv~~~~--------------~~~-~~v~~l~~~GhEIg~Ht 186 (435)
.|.++|---...+.. +.++|.++ | |+-+.+|.-.+ ... +.++.+.++|.+|+.||
T Consensus 3 lirleDVsP~~~~~~l~~i~d~l~~~-----~--ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHG 75 (243)
T PF10096_consen 3 LIRLEDVSPFSDLEKLKEIADYLYKY-----G--IPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHG 75 (243)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHC-----C--CCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEe
Confidence 455666444333444 45556665 7 88777776432 122 67899999999999999
Q ss_pred ccccCC--CC-------------CCCHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccchh---hhcCceEee
Q psy10480 187 ISLQDG--LQ-------------DKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQF---EDFGFIYDS 248 (435)
Q Consensus 187 ~~H~~~--l~-------------~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~~---~~~Gf~YDs 248 (435)
++|... .+ ..+.++.++-|..+.+++++. |+ .+.||-+|....+.+++. +...+.|+.
T Consensus 76 YtHq~~~~~sg~~~ef~~~~~~~~~~~~~a~~ri~~gl~~l~~~-gi---~p~~f~aP~y~~s~~~~~~~~~~f~~i~~~ 151 (243)
T PF10096_consen 76 YTHQYGNSVSGDGFEFWDSEFDAGDSEEEAKERIEKGLEILAEL-GI---YPVGFEAPHYWASPETYKVLEKYFTIIYEP 151 (243)
T ss_pred cceecCCCcccccceeccccccccCCHHHHHHHHHHHHHHHHHC-CC---cccEEECCccccCHHHHHHHHhhCcEEEcc
Confidence 999851 00 245677778888888888774 66 469999999988877653 444444544
Q ss_pred ecccCCCC-CCCCccccCCCCCCCccCCCCCCCCCCceEEEcccccc
Q psy10480 249 SVSVPALK-FPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHF 294 (435)
Q Consensus 249 S~~~~~~~-~p~wPytld~~~~~~c~~~~cp~~~~pglweiP~~~~~ 294 (435)
....+... ....||.+.. ..-|.|-||-+..+
T Consensus 152 ~~~~~~~~~~~~~py~i~~--------------~~~~~~~iPe~lg~ 184 (243)
T PF10096_consen 152 NQYYPNKNAGQFFPYIITN--------------DNYGTRYIPENLGY 184 (243)
T ss_pred ccccCCcccccccceeecc--------------CCcceEEecCcccc
Confidence 33322111 1234554431 13378999987544
No 15
>COG3233 Predicted deacetylase [General function prediction only]
Probab=97.58 E-value=0.00051 Score=63.86 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=84.7
Q ss_pred eEEEEeeCCCC-CCchHHHHHHHhccCCCCCCCCcceeE-EEeccc-------CC---HHHHHHHHHcCCeeeecccccc
Q psy10480 123 MILLTFDGAVN-LNNYDHYQKVFSDSRKNPNGCPMKGTF-FISHEY-------SD---YSMIQNLANRGHEIGVETISLQ 190 (435)
Q Consensus 123 ~V~lTFDDg~~-~~~~~~~~~il~~~r~n~~gc~i~aTF-Fv~~~~-------~~---~~~v~~l~~~GhEIg~Ht~~H~ 190 (435)
.|.|-.|-.+. ...+..+..+++++ |....|+ +|.-+. .+ .+.+.+..++|+|++.|||.|.
T Consensus 5 ~iillhdVSpv~~~~~~~i~~~ide~------~~~~~t~lLViPn~~~~~~l~~d~rf~~~l~~r~e~Gdel~lHGy~h~ 78 (233)
T COG3233 5 LIILLHDVSPVYWPTLSNIDAAIDEY------GAQNSTVLLVIPNHANDYPLSKDPRFVDLLTEREEEGDELVLHGYDHI 78 (233)
T ss_pred ceEEEEecCcccchhHHHHHHHHHHh------CCCCceEEEEeeccCCCCCcccChHHHHHHHHHHhcCCEEEEechhhc
Confidence 45555665543 33344556677776 3677787 776432 12 3888999999999999999997
Q ss_pred C----C-CCCCCHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccch--hhhcCceEeeeccc
Q psy10480 191 D----G-LQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQ--FEDFGFIYDSSVSV 252 (435)
Q Consensus 191 ~----~-l~~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~--~~~~Gf~YDsS~~~ 252 (435)
+ . ..-+...+-+.-+..+.+++++ .|++ .+||-+|-+..+..+. +-+.||+|-+++.+
T Consensus 79 d~~~~gEF~~l~~~eA~~RL~~a~~~l~~-~G~~---~~~FvpPrwlmS~gt~~aL~~~~frv~a~l~~ 143 (233)
T COG3233 79 DTKRRGEFACLRAHEARLRLMAAIEELEA-LGFP---LRGFVPPRWLMSEGTRQALLENNFRVTADLRG 143 (233)
T ss_pred cccCccccccchHHHHHHHHHHHHHHHHH-cCCc---ceeecCcceecCHhHHHHhccCCcEEEecccc
Confidence 4 1 2234455556677777888876 4665 6999999999888765 48999999998764
No 16
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=96.20 E-value=0.0037 Score=63.64 Aligned_cols=193 Identities=13% Similarity=0.097 Sum_probs=107.5
Q ss_pred HHHHHHHHHcCC-eeeeccccccCCCCCCCH-HHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccch--hhhcCc
Q psy10480 169 YSMIQNLANRGH-EIGVETISLQDGLQDKGY-EEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQ--FEDFGF 244 (435)
Q Consensus 169 ~~~v~~l~~~Gh-EIg~Ht~~H~~~l~~~s~-e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~--~~~~Gf 244 (435)
.+.+|+++++|+ ||-.-+++|. .+.-++. +..+.+|...++.+++..|. .++||..|-..++.... +++.|+
T Consensus 113 i~~~~~l~~~G~iEll~~~~~h~-ilpl~~~~~d~~~Qi~~~~~~~~~~FG~---~P~G~W~pE~a~~~~l~~~l~~~Gi 188 (360)
T PF03065_consen 113 IEAFRELAERGQIELLTSPYYHP-ILPLLPDPEDFRAQIEMGREYFKKHFGR---RPRGFWLPECAYSPGLEEILAEAGI 188 (360)
T ss_dssp HHHHHHHHHTTSEEEEEE-TT-B--GGGSSHHHHHHHHHHHHHHHHHHHHSS-----SBEE-GGG-B-TTHHHHHHHTT-
T ss_pred HHHHHHHHHCCCEEEEeCchHHH-HHHHhCCHHHHHHHHHHHHHHHHHHhCC---CCCceECcccccCHHHHHHHHHcCC
Confidence 588899999998 9999999997 4566777 99999999999999999985 46999999988877654 499999
Q ss_pred eEeeeccc-----C-CCCCCCCccccCCCCCCCccCCCCCCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHH
Q psy10480 245 IYDSSVSV-----P-ALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDE 318 (435)
Q Consensus 245 ~YDsS~~~-----~-~~~~p~wPytld~~~~~~c~~~~cp~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 318 (435)
.|--.=.. . ....++.||.... .+..+|..++-+....+... + ....+ ....+.++
T Consensus 189 ~~~i~d~~~~~~~~~~~~~~y~py~~~~-------------~~~~~l~vf~rd~~ls~~I~-f--~~~g~--~~~~~~~~ 250 (360)
T PF03065_consen 189 RYTILDGHQLLGAGSPPNNPYRPYRVED-------------QGGSGLAVFFRDQELSDDIW-F--RYSGY--PGDPAYRE 250 (360)
T ss_dssp -EEEEECHHHHHHT--CGGCSSEEEECE--------------TTCSEEEEEB-HHHHHHHH-T--TTTSG--GGSTTSBH
T ss_pred EEEEECcHHhCCCCCccCCCCceeEeec-------------CCCceEEEEecCHHHHHhcC-C--ccccc--ccccCHHH
Confidence 99443211 1 1123455665432 12335888876643222110 0 00000 01123445
Q ss_pred HHHHHHHHHHHHHcCC-CceEEeccCcccc------CchHHHHHHHHHHHHHhcCCCEEEEchHHHHHHhcC
Q psy10480 319 VLEWLKEDFNKYYTQN-KAPYMMPFHTNWF------QIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTN 383 (435)
Q Consensus 319 ~~~~l~~~fd~~y~~n-rap~~i~~H~~~~------~~p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~~~ 383 (435)
+++.+...+....... +...+|.+.-..+ .....++.|.+.+..+.+.+.|.++|.+|+++-+..
T Consensus 251 ~~~~l~~~~~~~~~~~~~~~v~i~~DgE~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~~~t~se~l~~~~~ 322 (360)
T PF03065_consen 251 FYRYLLYEYASWISYDPGPVVVIALDGENFWGHYWDEGEGFLEFLYQLLEELHSRGFIETVTPSEYLERHPP 322 (360)
T ss_dssp SSCHHC----HC-BS-TT-EEEECCEGGGCCCCCCCCTCEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHhhhhhhhhhhccCCCCeEEEeECCcccCCcCCcccCCHHHHHHHHHHHhhcCCeEEecCHHHHHhhCCC
Confidence 5555441133333332 2334444433222 223456666666667776656889999999986643
No 17
>PF11959 DUF3473: Domain of unknown function (DUF3473); InterPro: IPR022560 This domain, found in bacteria and archaea, is functionally uncharacterised. It is about 130 amino acids in length and is found C-terminal to PF01522 from PFAM. It contains two completely conserved residues (P and H) that may be functionally important.
Probab=95.72 E-value=0.049 Score=47.50 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCceEEeccCccccCc--h---------------HHHHHHHHHHHHHhcCCCEEEEchHHHHH
Q psy10480 324 KEDFNKYYTQNKAPYMMPFHTNWFQI--K---------------ELEQGLHKFLDWAAQKPDVWFVTITQALT 379 (435)
Q Consensus 324 ~~~fd~~y~~nrap~~i~~H~~~~~~--p---------------~~~~al~~Fl~~i~~~~dV~fvT~~ei~~ 379 (435)
+..+.+....++.|+++||||+.+.. | ...++.+|+-..| .|.-|+|++|+++
T Consensus 62 ~~~~~~~~~~~~~~~~~YfHPwE~dp~qpr~~~~~~~~rf~~y~~l~~~~~rl~~Ll---~~f~f~t~~~~~~ 131 (133)
T PF11959_consen 62 RWLIRRINRRGGQPAVFYFHPWEFDPDQPRVPGAPLKSRFRHYNNLDRMEKRLDRLL---SDFRFGTMREVLA 131 (133)
T ss_pred HHHHHHHHhCCCcceEEEEeceecCCCCcccCCCCcceeEEEEcCHHHHHHHHHHHH---hhCceEEHHHHhh
Confidence 33334433444589999999999842 1 0123333333333 4779999999975
No 18
>PF15421 Polysacc_deac_3: Putative polysaccharide deacetylase; PDB: 4DWE_A.
Probab=94.42 E-value=0.34 Score=48.93 Aligned_cols=165 Identities=11% Similarity=0.263 Sum_probs=71.2
Q ss_pred CHHHHHHHHHcCCeeeeccccccCCCCCCCHHHHHHHHHH-HHHHHHHhccCCCCCceEeccCCCCCCccchh--hhcCc
Q psy10480 168 DYSMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIG-MREILHHFANITRSDIVGMRAPFLLPGRNTQF--EDFGF 244 (435)
Q Consensus 168 ~~~~v~~l~~~GhEIg~Ht~~H~~~l~~~s~e~~~~Ei~~-~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~~--~~~Gf 244 (435)
.|+.|++|++-|.+||.|.+.+. .. +.+.++.+.+..- +..++++..|... +-+-.|- ++.-. ..+++
T Consensus 131 ~W~evkem~nyG~~ia~Hdv~~~-~~-~~t~~~~~~~~~i~~~~i~~~l~GR~~---K~l~ePn----Gn~~Yi~aa~~~ 201 (425)
T PF15421_consen 131 SWDEVKEMLNYGTGIAFHDVNTY-DV-DTTDDQILAHFCIAQNSIFKNLSGRGC---KMLAEPN----GNKKYITAALVY 201 (425)
T ss_dssp -HHHHHHHHTTT-EEEB---SS--GG-G-SHHHHHHHHHHHHHHHHHHTTT-------EEE--T----T-HHHHHHHTTS
T ss_pred cHHHHHHHHhcCcceEecccccc-cc-cccchhhhhhhhhHHHHHHHHhcCccc---ceeeCCC----CCHHHHHHHHcC
Confidence 47999999999999999999875 33 3454454544444 4445566555432 2333343 33322 33333
Q ss_pred eEeeecccCCCCCCCCccccCCCCCCCccCCCCCCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHH
Q psy10480 245 IYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLK 324 (435)
Q Consensus 245 ~YDsS~~~~~~~~p~wPytld~~~~~~c~~~~cp~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~ 324 (435)
.=--++.+..+...+.|+..+.. ... ..+ +- .+.+ ..+.+++.+.|.
T Consensus 202 d~Iqtitaq~G~~kv~pf~~~~d--------------L~k-~~~--~R-----------~F~~-----~~~~~~~k~~I~ 248 (425)
T PF15421_consen 202 DPIQTITAQSGAIKVYPFKVNGD--------------LEK-VVI--ER-----------GFYD-----SPDNDQYKQDIE 248 (425)
T ss_dssp TT--EEEESSS-B---TTT--S----------------TT-EEE--E------------B----------THHHHHHHHH
T ss_pred CchhhhHhhcCCcceeccccCCc--------------hhh-hee--ee-----------eecC-----CcchHHHHHHHH
Confidence 22223444333334566654321 001 001 10 0112 122445555555
Q ss_pred HHHHHHHcCCCceEEeccCccccCchHHHHHHHHHHHHHhc------CCCEEEEchHHHHH--Hhc
Q psy10480 325 EDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQ------KPDVWFVTITQALT--WMT 382 (435)
Q Consensus 325 ~~fd~~y~~nrap~~i~~H~~~~~~p~~~~al~~Fl~~i~~------~~dV~fvT~~ei~~--w~~ 382 (435)
+....-- .+|.-..|+.|- +...+ ..||.||.+ .+.|||.+-+|..+ |||
T Consensus 249 ~~l~~p~-e~r~ai~iG~h~----td~~W---~~fl~wLn~~YG~~G~D~lWfp~~eEyyEY~Y~R 306 (425)
T PF15421_consen 249 DQLKNPV-EEREAINIGVHG----TDSNW---EDFLLWLNDTYGKDGDDSLWFPSQEEYYEYNYYR 306 (425)
T ss_dssp HHHTS-G-GG---EEEEESS------HHH---HHHHHHHHHHTSTTTT--EEEE-HHHHHHHHHHH
T ss_pred HHhccch-hchhheeecccC----CCCcH---HHHHHHHHHHhCcCCCcccccCCHHHHHHHHHHh
Confidence 5544222 356667888885 33333 338888863 57899999999998 556
No 19
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=93.47 E-value=0.69 Score=50.46 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=61.0
Q ss_pred HHHHHHHHcCC-eeeeccccccCCCCCCC----HHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccch--hhhc
Q psy10480 170 SMIQNLANRGH-EIGVETISLQDGLQDKG----YEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQ--FEDF 242 (435)
Q Consensus 170 ~~v~~l~~~Gh-EIg~Ht~~H~~~l~~~s----~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~--~~~~ 242 (435)
+..|++.+.|+ |+-.+++.|+. +.-+. .+++.+++...+++.+++.|. .++|||+|.+.++.+.+ +++.
T Consensus 183 ~~~r~l~e~g~~e~~~~pyyHsl-~pl~~d~gw~~d~~~qv~~~~~~~~elfG~---~p~~~~~tEl~y~~~i~~~~~e~ 258 (615)
T COG1449 183 EAFRELAESGKVELTASPYYHSL-IPLLADDGWYEDFKEQVMMSRELYKELFGV---WPSGFWNTELAYNDQILEYFEES 258 (615)
T ss_pred HHHHHHHhcCceEEEeccccccc-chhcccCCchHHHHHHHHHHHHHHHHHhCC---CCccccChhhhccHHHHHHHHHc
Confidence 77899999998 99999999962 22222 237889999999999999996 46999999999988665 4999
Q ss_pred CceEeee
Q psy10480 243 GFIYDSS 249 (435)
Q Consensus 243 Gf~YDsS 249 (435)
||.|-.+
T Consensus 259 G~~~~~~ 265 (615)
T COG1449 259 GFSWIAS 265 (615)
T ss_pred CCccccc
Confidence 9997433
No 20
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=91.74 E-value=1.4 Score=41.50 Aligned_cols=175 Identities=16% Similarity=0.141 Sum_probs=86.2
Q ss_pred CcceeEEEecccCCH-HHHHHHHHcCCeeeecccc------ccC---CCCCCCHHHHHHHHHHHHHHHHHhccCCCCCce
Q psy10480 155 PMKGTFFISHEYSDY-SMIQNLANRGHEIGVETIS------LQD---GLQDKGYEEWVGEMIGMREILHHFANITRSDIV 224 (435)
Q Consensus 155 ~i~aTFFv~~~~~~~-~~v~~l~~~GhEIg~Ht~~------H~~---~l~~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~ 224 (435)
|.+.||-|.-...+- +.++...++||||-.|==- +.. -+.+++.+++++.+..+ |++ ++ ..+
T Consensus 20 p~pvT~ai~P~~~~~~~~a~~a~~~G~EvllhlPMep~~~~~~gp~~L~~~~~~~~i~~~l~~a---l~~---vp--~a~ 91 (213)
T PF04748_consen 20 PFPVTFAILPYAPYSREWAERARAAGHEVLLHLPMEPKGYKDPGPGALLTGMSEEEIRKRLEAA---LAR---VP--GAV 91 (213)
T ss_dssp STTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTT---TT-B-TTS-HHHHHHHHHHH---HCC---ST--T-S
T ss_pred CCCeEEEECCCCCChHHHHHHHHHcCCEEEEeCCCCCCCCCCcccccccCCCCHHHHHHHHHHH---HHH---CC--CcE
Confidence 588999888766554 7788888999999998421 110 02456777655555443 333 22 234
Q ss_pred EeccCCCC-CCcc--ch------hhhcCceEeeecccCCCCCCCCccccCCCCCCCccCCCCCCCCCCceEEEccccccc
Q psy10480 225 GMRAPFLL-PGRN--TQ------FEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFV 295 (435)
Q Consensus 225 G~R~P~l~-~~~~--~~------~~~~Gf~YDsS~~~~~~~~p~wPytld~~~~~~c~~~~cp~~~~pglweiP~~~~~~ 295 (435)
|.-..-|+ .+.+ .+ +++.|+.|--|....... .+-....+| +|...
T Consensus 92 GvnNhmGS~~T~~~~~m~~vl~~l~~~gl~FvDS~T~~~s~--a~~~A~~~g--------------------vp~~~--- 146 (213)
T PF04748_consen 92 GVNNHMGSRFTSDREAMRWVLEVLKERGLFFVDSRTTPRSV--APQVAKELG--------------------VPAAR--- 146 (213)
T ss_dssp EEEEEE-CCHHC-HHHHHHHHHHHHHTT-EEEE-S--TT-S--HHHHHHHCT----------------------EEE---
T ss_pred EEecCCCccccCCHHHHHHHHHHHHHcCCEEEeCCCCcccH--HHHHHHHcC--------------------CCEEe---
Confidence 54433232 2222 11 278888875444432110 011111111 22211
Q ss_pred cccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCCceEEeccCccccCchHHHHHHHHHHHHHhcCCCEEEEchH
Q psy10480 296 ESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTIT 375 (435)
Q Consensus 296 ~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~nrap~~i~~H~~~~~~p~~~~al~~Fl~~i~~~~dV~fvT~~ 375 (435)
.+ .++| ...+.+.+.+.|......... ++. .+.--|+ .|..+++|++++..+..+ +|-+|+.+
T Consensus 147 rd------vfLD----~~~~~~~I~~ql~~~~~~A~~-~G~-aI~Igh~----~p~Tl~~L~~~~~~l~~~-gi~lVpvS 209 (213)
T PF04748_consen 147 RD------VFLD----NDQDEAAIRRQLDQAARIARK-QGS-AIAIGHP----RPETLEALEEWLPELEAQ-GIELVPVS 209 (213)
T ss_dssp -S------EETT----ST-SHHHHHHHHHHHHHHHHC-CSE-EEEEEE-----SCCHHHHHHHHHHHHHHC-TEEE--HH
T ss_pred ec------eecC----CCCCHHHHHHHHHHHHHhhhh-cCc-EEEEEcC----CHHHHHHHHHHHhHHhhC-CEEEEEhH
Confidence 01 2344 235566666666665555433 332 2333354 245789999999999887 99999999
Q ss_pred HHHH
Q psy10480 376 QALT 379 (435)
Q Consensus 376 ei~~ 379 (435)
++++
T Consensus 210 ~llr 213 (213)
T PF04748_consen 210 ALLR 213 (213)
T ss_dssp HH--
T ss_pred HhhC
Confidence 9874
No 21
>KOG1958|consensus
Probab=80.20 E-value=41 Score=38.17 Aligned_cols=196 Identities=17% Similarity=0.306 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCC-eeeeccccccCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCceEecc-CCCCC--------Ccc--
Q psy10480 169 YSMIQNLANRGH-EIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRA-PFLLP--------GRN-- 236 (435)
Q Consensus 169 ~~~v~~l~~~Gh-EIg~Ht~~H~~~l~~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~-P~l~~--------~~~-- 236 (435)
...|+.++++|. ||..-||.-. +-.+..+-.+.+++.....+|+..+|+.++ .||.- |||-. ..+
T Consensus 228 k~a~k~lv~~GqlEIvtGGWVMp-DEAn~Hy~~~i~qliEGh~Wl~~~igv~P~--s~WaiDPFG~S~TmpYLL~~ag~~ 304 (1129)
T KOG1958|consen 228 KNAVKRLVKNGQLEIVTGGWVMP-DEANSHYFAMIDQLIEGHQWLKNNIGVTPQ--SGWAIDPFGYSSTMPYLLRRAGFE 304 (1129)
T ss_pred HHHHHHHHhcCcEEEEeCccccC-cccchhHHHHHHHHhhhhhHHhccCCCCCC--cccccCCCCCCcchHHHHhhcCch
Confidence 488999999995 9999999865 345667778889999999999999987654 34442 44421 111
Q ss_pred -ch-----------h---hhcCceEeeecccCCC-CC--CCCccccCCCCCCCccCCC--CCCCCCCceEEEcccccccc
Q psy10480 237 -TQ-----------F---EDFGFIYDSSVSVPAL-KF--PVWPYTLDHKIPHECKSGT--CPTKSFPGVWEVPLNAHFVE 296 (435)
Q Consensus 237 -~~-----------~---~~~Gf~YDsS~~~~~~-~~--p~wPytld~~~~~~c~~~~--cp~~~~pglweiP~~~~~~~ 296 (435)
++ + +..-|.|--.|-..+. +. .+-||. -|.+||.|--.| |=.-.+ .
T Consensus 305 ~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFy-sYDIphTCGPdP~ICCqFDF-------------k 370 (1129)
T KOG1958|consen 305 NMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFY-SYDIPHTCGPDPKICCQFDF-------------K 370 (1129)
T ss_pred hHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccc-cccCCCccCCCCceeeeeec-------------c
Confidence 11 0 2233545444433221 11 123544 356788884322 211000 0
Q ss_pred ccCCC--CccCCCc-cCCCCCCHHHHHHHHHHHHHHHHcCCCceEEeccCcccc---Cc---hHHHHHHHHHHHHHhcCC
Q psy10480 297 SYEGG--HCPYLDQ-CVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWF---QI---KELEQGLHKFLDWAAQKP 367 (435)
Q Consensus 297 ~~~~~--~~~~~d~-~~~~~~~~~~~~~~l~~~fd~~y~~nrap~~i~~H~~~~---~~---p~~~~al~~Fl~~i~~~~ 367 (435)
.++|+ .|++.-. ......+..+=.++|.+++.+.-+-=|.+..+-.|-.-| .. .....-+++++|||.+++
T Consensus 371 Rmpg~~~~Cpw~vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~ 450 (1129)
T KOG1958|consen 371 RMPGGGCECPWGVPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRP 450 (1129)
T ss_pred cCCCCCcCCCCCCCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhccc
Confidence 11121 1333221 100123444556677777765433223333333332211 11 123456788999998865
Q ss_pred ----CEEEEchHHHHHHh
Q psy10480 368 ----DVWFVTITQALTWM 381 (435)
Q Consensus 368 ----dV~fvT~~ei~~w~ 381 (435)
...|-|.++..+-+
T Consensus 451 ~~nv~aqFGTlsDYF~al 468 (1129)
T KOG1958|consen 451 LLNVQAQFGTLSDYFDAL 468 (1129)
T ss_pred ccceeeecCCHHHHHHHH
Confidence 67899999987644
No 22
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.81 E-value=64 Score=31.02 Aligned_cols=197 Identities=16% Similarity=0.159 Sum_probs=106.4
Q ss_pred eEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecccC-CHHHHHHHHHcCCeeeecccc----ccCC----C
Q psy10480 123 MILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYS-DYSMIQNLANRGHEIGVETIS----LQDG----L 193 (435)
Q Consensus 123 ~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~-~~~~v~~l~~~GhEIg~Ht~~----H~~~----l 193 (435)
-++|-.||=..+....+ .+++- |...|.-+..... .-+..+++.++||||-.|--- +... |
T Consensus 30 klaIVIddlG~~~~~~~--~i~~L--------p~eVTlA~~P~~~~~~~~~~~A~~~G~evlih~PmeP~~~~~~e~gtL 99 (250)
T COG2861 30 KLAIVIDDLGLSQTGTQ--AILAL--------PPEVTLAFAPFAPHAREWAQKARNAGHEVLIHMPMEPFSYPKIEPGTL 99 (250)
T ss_pred eEEEEECCccccHHHHH--HHHhC--------CccceEEecCCCchhHHHHHHHHhcCCEEEEeccCCcccCCCCCCCCc
Confidence 48888888666554443 33332 3445543333322 247789999999999999632 2111 1
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccc--h------hhhcCceE-eeecccCCCCCCCCccc
Q psy10480 194 -QDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNT--Q------FEDFGFIY-DSSVSVPALKFPVWPYT 263 (435)
Q Consensus 194 -~~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~--~------~~~~Gf~Y-DsS~~~~~~~~p~wPyt 263 (435)
..++.++..+.|..+...+..+.|+.- --|-| .+.+. + +++.|.-| ||-..+.. -+-.
T Consensus 100 ~~~~s~~e~~~rl~~a~~~v~~~~GlnN--hmGs~-----~tsn~~aM~~~m~~Lk~r~l~flDs~T~a~S-----~a~~ 167 (250)
T COG2861 100 RPGMSAEEILRRLRKAMNKVPDAVGLNN--HMGSR-----FTSNEDAMEKLMEALKERGLYFLDSGTIANS-----LAGK 167 (250)
T ss_pred ccCCCHHHHHHHHHHHHhhCccceeehh--hhhhh-----hcCcHHHHHHHHHHHHHCCeEEEcccccccc-----hhhh
Confidence 346777777777766655555444321 12222 22221 1 26777655 33333211 0000
Q ss_pred cCCCCCCCccCCCCCCCCCCceEEEccccccccccCCCCccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCCceEEeccC
Q psy10480 264 LDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFH 343 (435)
Q Consensus 264 ld~~~~~~c~~~~cp~~~~pglweiP~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~fd~~y~~nrap~~i~~H 343 (435)
+ ..=.+||.-. . | .++| ...+..++...|...-.-. +.|+..++|. |
T Consensus 168 i------------------Ak~~gVp~~~--r-d------vfLD----~e~~~~~V~kql~~~~~~A-rk~G~ai~IG-h 214 (250)
T COG2861 168 I------------------AKEIGVPVIK--R-D------VFLD----DEDTEAAVLKQLDAAEKLA-RKNGSAIGIG-H 214 (250)
T ss_pred h------------------HhhcCCceee--e-e------eeec----CcCCHHHHHHHHHHHHHHH-HhcCceEEec-C
Confidence 0 0012233321 1 1 2344 2345666665555443322 3455555553 4
Q ss_pred ccccCchHHHHHHHHHHHHHhcCCCEEEEchHHHHH
Q psy10480 344 TNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALT 379 (435)
Q Consensus 344 ~~~~~~p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~ 379 (435)
+ .+..+++|++.++.+... ++-+|-+++++.
T Consensus 215 ~----~~~Tv~vl~~~~~~l~~~-gIelV~~s~L~~ 245 (250)
T COG2861 215 P----HKNTVAVLQQWLDELPAR-GIELVPVSALLG 245 (250)
T ss_pred C----chhHHHHHHHHHHhCCCC-CeEEecHHHhhc
Confidence 4 567899999999999876 999999999863
No 23
>PLN02701 alpha-mannosidase
Probab=67.02 E-value=1.1e+02 Score=35.84 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCC-eeeeccccccCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCceEecc-CCCCCCccc-hhhhcCce
Q psy10480 169 YSMIQNLANRGH-EIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRA-PFLLPGRNT-QFEDFGFI 245 (435)
Q Consensus 169 ~~~v~~l~~~Gh-EIg~Ht~~H~~~l~~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~-P~l~~~~~~-~~~~~Gf~ 245 (435)
.+.||+|+++|. ||..=+|.=. +....+.+.+.++|......|.+..|+.+ -.||.. |||-...-. +++..||.
T Consensus 105 ~~~vk~LV~~GrLE~vgGgwvm~-DEa~~~~esiI~Ql~~G~~~l~~~fG~~P--~~~W~iDpFGhs~~~P~Ll~~~G~~ 181 (1050)
T PLN02701 105 KEAFTKLVKNGQLEIVGGGWVMN-DEANSHYFAIIEQITEGNMWLNDTIGVAP--KNSWAIDPFGYSSTMAYLLRRMGFE 181 (1050)
T ss_pred HHHHHHHHHcCCEEEECCceecc-cccccCHHHHHHHHHhhhHHHHhhcCCCC--CcCccCCCCCCCHHHHHHHHhCCCc
Confidence 488999999996 8988888754 44567889999999988888988888754 366765 777644332 34888887
Q ss_pred Eeeec
Q psy10480 246 YDSSV 250 (435)
Q Consensus 246 YDsS~ 250 (435)
+-.-+
T Consensus 182 ~~~~~ 186 (1050)
T PLN02701 182 NMLIQ 186 (1050)
T ss_pred eEEEe
Confidence 65433
No 24
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=66.28 E-value=31 Score=33.37 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=63.4
Q ss_pred hHHHHHHHhccCCCCCCCCcceeEEEeccc-----------CCHHHHHHHHHcCC-eeeeccccccCCCCCCCHHHHHHH
Q psy10480 137 YDHYQKVFSDSRKNPNGCPMKGTFFISHEY-----------SDYSMIQNLANRGH-EIGVETISLQDGLQDKGYEEWVGE 204 (435)
Q Consensus 137 ~~~~~~il~~~r~n~~gc~i~aTFFv~~~~-----------~~~~~v~~l~~~Gh-EIg~Ht~~H~~~l~~~s~e~~~~E 204 (435)
+..++++|++. -..+| +.++. ...+.+++++++|- ||..=+|.-. +..-.+.|.+.+.
T Consensus 29 ~~~~l~~l~~~--------~~~~f-~~~~~~~~~~~~~~~p~~~~~~~~lv~~Gri~~vgg~~~~~-D~~l~~~Eslirq 98 (275)
T PF01074_consen 29 LDSVLDLLEED--------PDFRF-IDGQTAYLEDYLEDAPEEFKRIKKLVKEGRIEIVGGWYVQP-DENLPSGESLIRQ 98 (275)
T ss_dssp HHHHHHHHHH---------TT--E-ECTBCHHHHHHHHCSGHHHHHHHHHHHTTSEEESSSBSS-B--SSSS-HHHHHHH
T ss_pred HHHHHHHHHhC--------CcceE-eechhHHHHHHHHhCCHHHHHHHHHHHhceeEEeCceeeec-cccCCCHHHHHHH
Confidence 45556667663 34455 55442 12466799999995 5444445433 3345688999999
Q ss_pred HHHHHHHHHHhccCCCCCceEecc-CCCCCCccc-hhhhcCceEeeeccc
Q psy10480 205 MIGMREILHHFANITRSDIVGMRA-PFLLPGRNT-QFEDFGFIYDSSVSV 252 (435)
Q Consensus 205 i~~~r~~l~~~~gi~~~~i~G~R~-P~l~~~~~~-~~~~~Gf~YDsS~~~ 252 (435)
|...++.+++..|+.. ..||-. ++|....-- +++..|+.|-.....
T Consensus 99 l~~G~~~~~~~fg~~~--~~~~~~D~FG~~~~lP~il~~~Gi~~~v~~r~ 146 (275)
T PF01074_consen 99 LLYGHKYLRKEFGVRP--KVAWQPDSFGHSAQLPQILKQFGIKYFVIWRI 146 (275)
T ss_dssp HHHHHHHHHHHHTG----SEEEESSSSSB-TCHHHHHHTTT-SEEEESSS
T ss_pred HhhhHHHHHHhcCCCC--CeEEeCCCCCCchhhHHHHhccCcceEEEecc
Confidence 9999999988888654 356665 777654433 359999999877663
No 25
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=53.91 E-value=12 Score=27.89 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.5
Q ss_pred cccEEeCCCceeeEcCCCCceE
Q psy10480 35 RRFYQCVDHHPYVSLCPSGLYF 56 (435)
Q Consensus 35 ~~y~~C~~g~~~~~~Cp~Gl~F 56 (435)
.+|-+|.+|.-....||.|+.-
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~C 56 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTTC 56 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCEE
Confidence 4699999999999999999974
No 26
>KOG1959|consensus
Probab=46.11 E-value=5.1e+02 Score=29.67 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCC-eeeeccccccCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCceEecc-CCCCCCccc-hhhhcCc
Q psy10480 169 YSMIQNLANRGH-EIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRA-PFLLPGRNT-QFEDFGF 244 (435)
Q Consensus 169 ~~~v~~l~~~Gh-EIg~Ht~~H~~~l~~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~-P~l~~~~~~-~~~~~Gf 244 (435)
-.+||+|+++|- |+.+-||.-. +-....+..+.+++......|++..|.-+..-+||-- |||-..... ++++.||
T Consensus 110 k~~Vk~LV~~GrLEFi~Ggw~Mn-DEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslfAqmGf 187 (996)
T KOG1959|consen 110 KEQVKKLVNEGRLEFIGGGWSMN-DEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLFAQMGF 187 (996)
T ss_pred HHHHHHHHhcCCEEEecCeeeec-chhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHHHHhCc
Confidence 489999999995 9999998743 3345677888899999999999988855555678875 777643322 3477776
No 27
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=36.16 E-value=37 Score=29.32 Aligned_cols=68 Identities=16% Similarity=0.323 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCce------EEeccCccccCchHHHHHHHHHHHHHhcCCCEEEEchHHHHHHhcCC-cchhhhcc
Q psy10480 321 EWLKEDFNKYYTQNKAP------YMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNP-KSSKELLN 392 (435)
Q Consensus 321 ~~l~~~fd~~y~~nrap------~~i~~H~~~~~~p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~~~P-~~~~~~~~ 392 (435)
.+|.+.+.+.|-+--.| .+-.+.+.|+ ..|..+|++||..++.+|-.+ ...++-.++..+ +...+++.
T Consensus 42 ~~L~~~L~~~~p~~~IPpLP~K~~~g~f~~~FI--e~Rr~~Lq~FL~ria~hp~L~--~s~~~~~FL~~~~~~~~~~~~ 116 (127)
T cd07286 42 DWLYARLAEKFPVISVPHIPEKQATGRFEEDFI--SKRRKGLIWWMDHMCSHPVLA--RCDAFQHFLTCPSTDEKAWKQ 116 (127)
T ss_pred HHHHHHHHHHCCCcEeCCCcCCCcCCCCCHHHH--HHHHHHHHHHHHHHHcCcccc--cChHHHHHhcCCcchhHHHhh
Confidence 35666666666432111 1112333333 368999999999999997654 345565666654 34444443
No 28
>PF04794 YdjC: YdjC-like protein; InterPro: IPR006879 This entry contains ChbG (YdjC), which is is an uncharacterised protein encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source [, ]. The entry also contains HpnK, which is a protein associated with hopanoid biosynthesis.; PDB: 2E67_C 2I5I_B.
Probab=33.90 E-value=2e+02 Score=27.62 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=56.0
Q ss_pred eEEEEeeCCCCCCchHH-HHHHHhccCCCCCCCCcceeEEEecccCCHHHHHHHHHcC-Ceeeeccc-cccCC-------
Q psy10480 123 MILLTFDGAVNLNNYDH-YQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRG-HEIGVETI-SLQDG------- 192 (435)
Q Consensus 123 ~V~lTFDDg~~~~~~~~-~~~il~~~r~n~~gc~i~aTFFv~~~~~~~~~v~~l~~~G-hEIg~Ht~-~H~~~------- 192 (435)
.|.|.=||-+....++. +++++++ | -+.+|=-++..-.-.+.++.+.+.. -.||.|-. +...+
T Consensus 2 ~lii~ADDfG~s~~vn~gI~~~~~~------G-~vtstslM~n~p~~~~a~~~~k~~~~~~vGlHl~Lt~g~p~~~p~~v 74 (261)
T PF04794_consen 2 KLIINADDFGLSPGVNRGIIEAFEN------G-IVTSTSLMVNMPAFEEAAALAKNNPGLDVGLHLNLTSGWPVLSPTQV 74 (261)
T ss_dssp EEEEEEEEETSSHHHHHHHHHHHHC------C-T-SEEEEETTSTTHHHHHHHHHH-TTTEEEEEE-S---SSSS-TTTS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHc------C-CceEeeeccCChhHHHHHHHHHhCCCCCEEEEeEccCCCCCCCccCC
Confidence 46788899887776664 5677765 5 3565543332222135555555554 78998842 21101
Q ss_pred ---------------------CCCCCHHHHHHHHHHHHHHHHHhccCCCCCceE
Q psy10480 193 ---------------------LQDKGYEEWVGEMIGMREILHHFANITRSDIVG 225 (435)
Q Consensus 193 ---------------------l~~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G 225 (435)
...+++++++.|+..+.+...+ .|+.+..+-|
T Consensus 75 psLvd~~G~F~~~~~~~~~~~~~~~~~~ev~~E~~AQi~~f~~-~G~~P~hiD~ 127 (261)
T PF04794_consen 75 PSLVDEDGYFPRSKRLLRRALLRRADYEEVERELRAQIERFLD-MGRKPDHIDG 127 (261)
T ss_dssp GGGBBTTTBB-SCC----HCHCCC--HHHHHHHHHHHHHHHHC-CSS-ECEEEE
T ss_pred CCccCCCCccCCccccchhhhhccCCHHHHHHHHHHHHHHHHH-cCCCCCeEec
Confidence 1346789999999999888888 8877655544
No 29
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=32.81 E-value=58 Score=27.47 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEchHHHHHHhcCC
Q psy10480 350 KELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNP 384 (435)
Q Consensus 350 p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~~~P 384 (435)
..|..+|++||..|.+++. +-.....+.++.+.|
T Consensus 81 e~Rr~~Le~fL~~i~~~p~-l~~~s~~~~~FL~~~ 114 (116)
T cd07295 81 EERRQGLETFLQSVAGHPL-LQTGSKVLAAFLQDP 114 (116)
T ss_pred HHHHHHHHHHHHHHhcCHh-hhhCCHHHHHhcCCC
Confidence 4688999999999999862 211233445565544
No 30
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=30.54 E-value=1.1e+02 Score=25.67 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEchHHHHHHhcCC
Q psy10480 350 KELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNP 384 (435)
Q Consensus 350 p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~~~P 384 (435)
..|..+|++||..+++++.++ ...++.+++.+|
T Consensus 80 e~Rr~~Le~yL~~l~~~p~l~--~s~~~~~FL~~~ 112 (114)
T cd07300 80 AERRVALRDYLTLLYSLRFVR--RSQAFQDFLTHP 112 (114)
T ss_pred HHHHHHHHHHHHHHhcCHhhh--cChHHHHHhCCc
Confidence 468899999999999997544 557777777665
No 31
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=28.91 E-value=95 Score=24.35 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCceEEeccCccccCc-hHHHHHHHHHHHHHhcCCCEEEEchH
Q psy10480 325 EDFNKYYTQNKAPYMMPFHTNWFQI-KELEQGLHKFLDWAAQKPDVWFVTIT 375 (435)
Q Consensus 325 ~~fd~~y~~nrap~~i~~H~~~~~~-p~~~~al~~Fl~~i~~~~dV~fvT~~ 375 (435)
++|+......+.+++|.++..|-+. ......|+++.+.+.+..+|-|+...
T Consensus 8 ~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id 59 (104)
T cd02995 8 KNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMD 59 (104)
T ss_pred hhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEe
Confidence 4566655555578889999988764 23345666666666555567776543
No 32
>COG4878 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.70 E-value=60 Score=31.73 Aligned_cols=75 Identities=24% Similarity=0.292 Sum_probs=42.2
Q ss_pred ceeEEEecccCC-H-HHHHHHHHcCCeeeeccccccCCCC-CCCHHHHH--HHHHHHHHHHHHhcc---CCCCCceEecc
Q psy10480 157 KGTFFISHEYSD-Y-SMIQNLANRGHEIGVETISLQDGLQ-DKGYEEWV--GEMIGMREILHHFAN---ITRSDIVGMRA 228 (435)
Q Consensus 157 ~aTFFv~~~~~~-~-~~v~~l~~~GhEIg~Ht~~H~~~l~-~~s~e~~~--~Ei~~~r~~l~~~~g---i~~~~i~G~R~ 228 (435)
++.||...+..+ . ..=++|...|-|+|.||+.|. ++. ....+-|+ +.|.++...|.++.. +.+-+..-|-+
T Consensus 34 ~~gff~~~~~~~dl~~~g~el~~~gge~gIhgYNh~-sl~pk~~~knw~see~m~ka~~~L~~y~~~ls~~~y~~~vfVp 112 (309)
T COG4878 34 KGGFFSLEQSFDDLSAKGTELTFDGGEKGIHGYNHK-SLQPKDILKNWESEEIMNKANYTLADYGDILSITGYDTFVFVP 112 (309)
T ss_pred CCccchhhccchhhhhcCcEEEecCCceeEeeccCC-CCCccccccchhhHHHHHHHHHHHHHHHHHHhccccceEEEeC
Confidence 345777665433 3 333667789999999999997 432 22223333 225566555655432 23233455667
Q ss_pred CCCC
Q psy10480 229 PFLL 232 (435)
Q Consensus 229 P~l~ 232 (435)
|.-.
T Consensus 113 pSni 116 (309)
T COG4878 113 PSNI 116 (309)
T ss_pred cccc
Confidence 7543
No 33
>PF02294 7kD_DNA_binding: 7kD DNA-binding domain; InterPro: IPR003212 This family contains members of the hyperthermophilic archaebacterium 7kDa DNA-binding/endoribonuclease P2 family. There are five 7kDa DNA-binding proteins, 7a-7e, found as monomers in the cell. Protein 7e shows the tightest DNA-binding ability.; GO: 0003677 DNA binding, 0004521 endoribonuclease activity; PDB: 1SSO_A 2CVR_A 1B4O_A 2XIW_B 1WTV_A 1WTQ_A 1BF4_A 1WVL_B 1WTR_A 1WTP_B ....
Probab=28.62 E-value=49 Score=23.78 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=11.6
Q ss_pred CCCeEEEEeeCCCC
Q psy10480 120 TPQMILLTFDGAVN 133 (435)
Q Consensus 120 ~Pq~V~lTFDDg~~ 133 (435)
+.++|.+|+|||..
T Consensus 25 vgkmvsftyddgng 38 (62)
T PF02294_consen 25 VGKMVSFTYDDGNG 38 (62)
T ss_dssp CSSEEEEEEECSSS
T ss_pred hcceEEEEEecCCC
Confidence 46899999999754
No 34
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=27.71 E-value=3.3e+02 Score=25.97 Aligned_cols=63 Identities=14% Similarity=0.272 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCceEEeccCccccCchHHHHHHHHHHHHHhcCCCEEEEchHHHHHH
Q psy10480 316 SDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTW 380 (435)
Q Consensus 316 ~~~~~~~l~~~fd~~y~~nrap~~i~~H~~~~~~p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w 380 (435)
.++.++.|+..|-..+ +|.-+.+.|+=..--++..++.+.+.++.++...+|.++|.+.+...
T Consensus 82 l~q~~~~L~~~lg~l~--~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 82 LEQMRQMLRSRLGGLL--NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHHHHHHHHHHh--CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 4567778888776543 56667777775554456778889999999998889999999999654
No 35
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=27.48 E-value=2.1e+02 Score=23.25 Aligned_cols=53 Identities=19% Similarity=0.452 Sum_probs=31.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHcCCCceEEeccCccccCchHHHHHHHHHHHHHhcC
Q psy10480 309 CVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQK 366 (435)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~fd~~y~~nrap~~i~~H~~~~~~p~~~~al~~Fl~~i~~~ 366 (435)
|+. ..++.+.++||.....|.|-. .||.+..= . +..|..-+.-++|++.|.+.
T Consensus 12 CVn-~PsSkeTyeWL~aal~RKyp~--~~f~~~Yi-D-i~~p~~~~~~~~~a~~I~ed 64 (93)
T PF07315_consen 12 CVN-APSSKETYEWLEAALKRKYPD--QPFEFTYI-D-IENPPENDHDQQFAERILED 64 (93)
T ss_dssp GSS-S--HHHHHHHHHHHHHHH-TT--S-EEEEEE-E-TTT----HHHHHHHHHHHTT
T ss_pred hcC-CCCchhHHHHHHHHHhCcCCC--CceEEEEE-e-cCCCCccHHHHHHHHHHHhc
Confidence 553 357889999999999999975 56665311 1 11233335677888888765
No 36
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=26.91 E-value=3.7e+02 Score=28.44 Aligned_cols=87 Identities=11% Similarity=0.221 Sum_probs=59.0
Q ss_pred EEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecc---cCC--HHHHHHHHHcCCeee-----eccccccC--
Q psy10480 124 ILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHE---YSD--YSMIQNLANRGHEIG-----VETISLQD-- 191 (435)
Q Consensus 124 V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~---~~~--~~~v~~l~~~GhEIg-----~Ht~~H~~-- 191 (435)
|.+-. |++-. -+.++++++ +.||++=|=+.|+-+--. ..+ +.+|++..++||.|. .||.+...
T Consensus 302 IGvKv--GPs~~-pdel~~L~~--~LnP~~epGRlTLI~RmGa~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGNT~~t~~ 376 (474)
T PLN02291 302 LGIKV--SDKMD-PEELVKLIE--ILNPQNKPGRLTIIVRMGAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPS 376 (474)
T ss_pred eeEEE--CCCCC-HHHHHHHHH--HhCCCCCCceEEEEeccchHHHHHHHHHHHHHHHHcCCceEEeecCCCCCceeCCC
Confidence 44444 55544 455667776 678888444444433211 123 599999999999997 58887642
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Q psy10480 192 GLQDKGYEEWVGEMIGMREILHHF 215 (435)
Q Consensus 192 ~l~~~s~e~~~~Ei~~~r~~l~~~ 215 (435)
.++....+.+.+|+.+..++.++.
T Consensus 377 G~KTR~f~~Il~Ev~~ff~vh~~~ 400 (474)
T PLN02291 377 GLKTRPFDAIRAEVRAFFDVHEQE 400 (474)
T ss_pred CccCCcHHHHHHHHHHHHHHHHHc
Confidence 256678899999999999988774
No 37
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=26.75 E-value=79 Score=25.87 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEchHHHHHHhc
Q psy10480 350 KELEQGLHKFLDWAAQKPDVWFVTITQALTWMT 382 (435)
Q Consensus 350 p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~~ 382 (435)
..|..+|++||..|.+++|..+.....+.+++.
T Consensus 74 e~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~ 106 (108)
T cd06897 74 EERRVGLEAFLRALLNDEDSRWRNSPAVKEFLN 106 (108)
T ss_pred HHHHHHHHHHHHHHHcCCccchhcCHHHHHHhC
Confidence 368999999999999999776777777777664
No 38
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=26.51 E-value=4e+02 Score=27.99 Aligned_cols=87 Identities=15% Similarity=0.265 Sum_probs=58.9
Q ss_pred EEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecc---cCC--HHHHHHHHHcCCeee-----eccccccC--
Q psy10480 124 ILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHE---YSD--YSMIQNLANRGHEIG-----VETISLQD-- 191 (435)
Q Consensus 124 V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~---~~~--~~~v~~l~~~GhEIg-----~Ht~~H~~-- 191 (435)
|.+-. |++-. -+.++++++ +.||++=|=+.|+-+--. ..+ +.+|++..++||.|. .||.+...
T Consensus 282 IGvKv--GP~~~-p~~l~~L~~--~LnP~~epGRlTLI~RmGa~kV~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~t~~ 356 (443)
T TIGR01358 282 IGIKV--GPSMT-PDELLRLIE--RLNPENEPGRLTLISRMGADKIADKLPPLLRAVKAAGRRVVWVCDPMHGNTEEAAS 356 (443)
T ss_pred eeEEE--CCCCC-HHHHHHHHH--HhCCCCCCceEEEEeccCchHHHHhHHHHHHHHHHcCCceEEeecCCCCCceeCCC
Confidence 55544 55443 345666765 678888444555444211 122 599999999999987 58887652
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Q psy10480 192 GLQDKGYEEWVGEMIGMREILHHF 215 (435)
Q Consensus 192 ~l~~~s~e~~~~Ei~~~r~~l~~~ 215 (435)
.++.-..+.+.+|+.+..++.++.
T Consensus 357 G~KTR~f~~Il~Ev~~ff~vh~~~ 380 (443)
T TIGR01358 357 GYKTRRFDDIRSEVKGFFEVHRAE 380 (443)
T ss_pred CccCCcHHHHHHHHHHHHHHHHHc
Confidence 256678899999999999988774
No 39
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=25.71 E-value=2.2e+02 Score=24.39 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=29.4
Q ss_pred CCCCCeEEEEeeCCCCCCchHHHHHHHhccCCCCCCCCcceeEEEecccCCHHHHHHHHHcCC
Q psy10480 118 EDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLANRGH 180 (435)
Q Consensus 118 ~~~Pq~V~lTFDDg~~~~~~~~~~~il~~~r~n~~gc~i~aTFFv~~~~~~~~~v~~l~~~Gh 180 (435)
.....+|.|| ||....+...+++.+++. . + .++.-.|-.|...+...+++|...|.
T Consensus 95 ~~~~~Iillt--DG~~~~~~~~i~~~v~~~---~-~-~~~i~~~~~g~~~~~~~L~~LA~~~~ 150 (155)
T PF13768_consen 95 GCVRAIILLT--DGQPVSGEEEILDLVRRA---R-G-HIRIFTFGIGSDADADFLRELARATG 150 (155)
T ss_pred CCccEEEEEE--eccCCCCHHHHHHHHHhc---C-C-CceEEEEEECChhHHHHHHHHHHcCC
Confidence 3456778888 444223334455555432 1 2 13333333344455688888887764
No 40
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=24.07 E-value=70 Score=22.76 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=27.7
Q ss_pred cceeEEEecccCCHHHHHHHHHcCCeeeecccccc
Q psy10480 156 MKGTFFISHEYSDYSMIQNLANRGHEIGVETISLQ 190 (435)
Q Consensus 156 i~aTFFv~~~~~~~~~v~~l~~~GhEIg~Ht~~H~ 190 (435)
|.+.-|-...-.++++-++-...|.+.+.|...|+
T Consensus 11 i~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~~~Hp 45 (49)
T cd02334 11 ITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHP 45 (49)
T ss_pred ceeeeEECCCCCCcCchHHHHhCCCcCCCCCCCCC
Confidence 44444444445689999999999999999999996
No 41
>PRK02134 hypothetical protein; Provisional
Probab=23.09 E-value=6.8e+02 Score=24.05 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=57.7
Q ss_pred EEEEeeCCCCCCchHH-HHHHHhccCCCCCCCCccee-EEEecccCCHHHHHHHHHc-CCeeeec-cccccCC------C
Q psy10480 124 ILLTFDGAVNLNNYDH-YQKVFSDSRKNPNGCPMKGT-FFISHEYSDYSMIQNLANR-GHEIGVE-TISLQDG------L 193 (435)
Q Consensus 124 V~lTFDDg~~~~~~~~-~~~il~~~r~n~~gc~i~aT-FFv~~~~~~~~~v~~l~~~-GhEIg~H-t~~H~~~------l 193 (435)
+.+.=||-+....++. +++++++ | -+++| ..+++.+.. +.++.+... +-.||.| +.+...+ |
T Consensus 5 lIinADDfG~s~~vn~gI~~~~~~------G-~ltstslM~n~p~~~-~a~~l~~~~~~l~vGlHl~Lt~g~P~~~~psL 76 (249)
T PRK02134 5 LIVNADDFGLSKGQNYGIIEAHRN------G-VVTSTTAMVNMPAID-HAVQLSREYPSLGVGMHFVLTAGKPLTAMPSL 76 (249)
T ss_pred EEEECCcCCCCHHHHHHHHHHHHC------C-CeeEEEeecCCchHH-HHHHHHHhCCCCCEEEEEEecCCCccCCCCCC
Confidence 7778899887776664 4566654 6 25555 334443322 334433333 6789999 2332111 1
Q ss_pred -----------------CCCCHHHHHHHHHHHHHHHHHhccCCCCCceE
Q psy10480 194 -----------------QDKGYEEWVGEMIGMREILHHFANITRSDIVG 225 (435)
Q Consensus 194 -----------------~~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G 225 (435)
..++.++++.|+..+.+.+.+.+|+.+..+-|
T Consensus 77 ~d~~G~F~~~~~~~~~~~~~~~~ev~~E~~aQi~~f~~~~G~~p~hiD~ 125 (249)
T PRK02134 77 TDRDGLLGKWIWQLAEEGTLPLEEIAQELAAQYERFLSLFGRKPTHLDS 125 (249)
T ss_pred cCCCCCccHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhhCCCCCeeec
Confidence 13557888999999988888877877766655
No 42
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.73 E-value=1.6e+02 Score=27.48 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=47.9
Q ss_pred HHHHHHHHc-CCeeeeccccccC-CCCCCCHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCCccchhhhcCceEe
Q psy10480 170 SMIQNLANR-GHEIGVETISLQD-GLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEDFGFIYD 247 (435)
Q Consensus 170 ~~v~~l~~~-GhEIg~Ht~~H~~-~l~~~s~e~~~~Ei~~~r~~l~~~~gi~~~~i~G~R~P~l~~~~~~~~~~~Gf~YD 247 (435)
.+|.++.+. |-||..|+=.-.. .-..+++ .|+++|..--..|++.+|.+ |++.--+.++.+.||.||
T Consensus 20 Pll~~l~~~~gl~~~L~~GGl~aG~r~pl~~-~~r~~i~~hd~rIa~lTGqp----------Fg~~y~~~lL~~~~~v~D 88 (212)
T COG3531 20 PLLEALSAQPGLEVVLHGGGLRAGNRRPLDP-AFRAYILPHDQRIAQLTGQP----------FGQAYFDGLLRDTGFVYD 88 (212)
T ss_pred HHHHHHHhcCCceEEEecCCccCCCCCCCCh-HHHHHhhhhHHHHHHHhCCc----------cchhHHhhhhcccCcccc
Confidence 566677666 9999999843210 1123444 57899988888999988853 333223456788999999
Q ss_pred eecc
Q psy10480 248 SSVS 251 (435)
Q Consensus 248 sS~~ 251 (435)
|--.
T Consensus 89 Sepa 92 (212)
T COG3531 89 SEPA 92 (212)
T ss_pred ccHH
Confidence 9754
No 43
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=22.06 E-value=1.5e+02 Score=24.48 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEchHHHHHHhc
Q psy10480 350 KELEQGLHKFLDWAAQKPDVWFVTITQALTWMT 382 (435)
Q Consensus 350 p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~~ 382 (435)
..|..+|++||..|..++. +.....+.++..
T Consensus 73 e~Rr~~Le~fL~~l~~~p~--l~~s~~l~~FL~ 103 (105)
T cd06866 73 EARRRGLSRFLNLVARHPV--LSEDELVRTFLT 103 (105)
T ss_pred HHHHHHHHHHHHHHhcChh--hccChHHHhhcC
Confidence 3689999999999999874 344555555554
No 44
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=21.46 E-value=1.8e+02 Score=25.48 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEchHHHHHHh
Q psy10480 350 KELEQGLHKFLDWAAQKPDVWFVTITQALTWM 381 (435)
Q Consensus 350 p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~ 381 (435)
..|..+|++||.-|+++++ +....++.+++
T Consensus 106 EeRR~gLE~fLq~Ll~~p~--l~~s~~v~~FL 135 (138)
T cd06879 106 EERRHSLEEWMGKLLSDID--LSRSVPVASFL 135 (138)
T ss_pred HHHHHHHHHHHHHHHcCcc--ccCCHHHHHHh
Confidence 4688999999999999876 45555555443
No 45
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.68 E-value=2.7e+02 Score=25.36 Aligned_cols=68 Identities=9% Similarity=0.211 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCC--ceEEeccCccccCchHHHHHHHHHHHHH-hcCCCEEEEchHHHHHHhcCC
Q psy10480 314 HDSDEVLEWLKEDFNKYYTQNK--APYMMPFHTNWFQIKELEQGLHKFLDWA-AQKPDVWFVTITQALTWMTNP 384 (435)
Q Consensus 314 ~~~~~~~~~l~~~fd~~y~~nr--ap~~i~~H~~~~~~p~~~~al~~Fl~~i-~~~~dV~fvT~~ei~~w~~~P 384 (435)
.+..++++.+...+++....++ .-=+|.+|+ +.|.+-+++.+|+++= ...+.|.|+=..+-+--++.+
T Consensus 43 ~~~~~i~~a~~~eid~l~~e~Gyk~~Dvvsv~~---~~pk~del~akF~~EH~H~d~EvRy~vaG~GiF~v~~~ 113 (181)
T COG1791 43 AEKEHIIDAYETEIDRLIRERGYKNRDVVSVSP---SNPKLDELRAKFLQEHLHTDDEVRYFVAGEGIFDVHSP 113 (181)
T ss_pred cchhhhHhhHHHHHHHHHHhhCCceeeEEEeCC---CCccHHHHHHHHHHHhccCCceEEEEEecceEEEEECC
Confidence 4577888999999998876432 234778887 6678889999999854 556678777666655444433
No 46
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=20.47 E-value=1.3e+02 Score=25.90 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEchHHHHHHhc
Q psy10480 351 ELEQGLHKFLDWAAQKPDVWFVTITQALTWMT 382 (435)
Q Consensus 351 ~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~~ 382 (435)
.|..+|++||..|.+++.++ ...++.++++
T Consensus 98 ~Rr~~Le~fL~~i~~~p~l~--~s~~l~~FL~ 127 (129)
T cd06864 98 RRRAGLENFLLRVAGHPELC--QDKIFLEFLT 127 (129)
T ss_pred HHHHHHHHHHHHHHcChhhh--cCcHHHHhcC
Confidence 58889999999999987643 3444444443
No 47
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=20.40 E-value=1.2e+02 Score=25.98 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEchHHHHHHhcCCcchhhhccCC
Q psy10480 350 KELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNPKSSKELLNYD 394 (435)
Q Consensus 350 p~~~~al~~Fl~~i~~~~dV~fvT~~ei~~w~~~P~~~~~~~~~~ 394 (435)
..|..+|+.||..|.+++.+ .....+.+++..+ .-.+++++.
T Consensus 75 e~Rr~~Le~fL~~I~~~p~l--~~s~~~~~FL~~~-~~~~~~~~~ 116 (125)
T cd06862 75 EKRRERLELWMNRLARHPVL--SQSEVFRHFLTCT-DEKDWKSGK 116 (125)
T ss_pred HHHHHHHHHHHHHHhcCHhh--hcChHHHHHcCCc-cHHHHHHhh
Confidence 35889999999999998753 4666667777654 334454443
No 48
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=20.07 E-value=55 Score=32.84 Aligned_cols=33 Identities=33% Similarity=0.699 Sum_probs=23.6
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEeeCCCCCCchH
Q psy10480 104 CSKDGTIIPGGLDAEDTPQMILLTFDGAVNLNNYD 138 (435)
Q Consensus 104 C~~~~~~~Pg~l~~~~~Pq~V~lTFDDg~~~~~~~ 138 (435)
|..+||..|- +..-.|.||.+||||+..+++++
T Consensus 149 ~~~~gTi~P~--t~t~~P~Fv~msy~e~t~~~Nld 181 (369)
T PF02456_consen 149 CGPDGTIVPQ--TGTFRPKFVEMSYDEATSPENLD 181 (369)
T ss_pred CCCCCeeccc--cccccccceeecHhhhCCccccC
Confidence 3355677773 22336899999999999988754
Done!