RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10480
(435 letters)
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR
{Tachypleus tridentatus} SCOP: g.31.1.1
Length = 74
Score = 62.9 bits (153), Expect = 6e-13
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 19 CPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLPT 76
+G + +C FY C + CP GL+++ K+C + ++A C +
Sbjct: 9 YSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCTSVNK 66
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan,
TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter
pylori}
Length = 326
Score = 59.8 bits (145), Expect = 4e-10
Identities = 34/248 (13%), Positives = 71/248 (28%), Gaps = 55/248 (22%)
Query: 156 MKGTFFI-SHEYSDY-SMIQNLANRGHEI---GVETISLQDGLQDKGYEEWVGEMIGMRE 210
+ T+F+ H + ++ + + GHE+ G + EE V + +
Sbjct: 88 LPATWFVPGHSIETFPEQMKMIVDAGHEVGAHGYSHENPIA--MSTKQEEDV-----LLK 140
Query: 211 ILHHFANITRSDIVGMRAPFLLPGRNTQ--FEDFGFIYDSSVS---------VPALKFPV 259
+ ++T G AP+ T GF YD S+ +
Sbjct: 141 SVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSK 200
Query: 260 WPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEV 319
Y+L+ K + T + E+P N + + ++
Sbjct: 201 IDYSLEAKDWMKPLIRGVET----NLVEIPANWYLDDLPPMMFIKKSPNSFGFV-SPRDI 255
Query: 320 LEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLH--------------KFLDWAAQ 365
+ + F+ Y + + +H K ++ +
Sbjct: 256 GQMWIDQFDWVY-REMDYAVFSM------------TIHPDVSARPQVLLMHEKIIEHINK 302
Query: 366 KPDVWFVT 373
V +VT
Sbjct: 303 HEGVRWVT 310
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, carbohydrate
esterase family 4; 2.01A {Mycobacterium smegmatis}
Length = 300
Score = 49.3 bits (118), Expect = 9e-07
Identities = 41/239 (17%), Positives = 70/239 (29%), Gaps = 63/239 (26%)
Query: 156 MKGTFFI-SHEYSDY-SMIQNLANRGHEI---GVETISLQDGLQDKGYEEWVGEMIGMRE 210
+ GTFF+ + + I+++A GHEI G SL D+ E + +
Sbjct: 76 VPGTFFVPGYTAHRHPEPIRSIARAGHEIAHHGYLHESLVGA--DEDTERKI-----LTR 128
Query: 211 ILHHFANITRSDIVGMRAPFLLPGRNT--QFEDFGFIYDSSVSVPALKFPVWPYTLDHKI 268
+ + VG RAP +T +FGF+YDS++ DH
Sbjct: 129 GIEALEEVAGVHPVGYRAPMWEMNWHTPKLLAEFGFLYDSTL-----------MDSDH-- 175
Query: 269 PHECKSGTCPTKSFPGVWEVPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFN 328
P+E G P W + + + ++ + +E + + N
Sbjct: 176 PYELAVGDGSLVELPVSWALDDWQQYCFVPDFSGTGLIETP-------AKAIELWRAELN 228
Query: 329 KYYTQNKAPYMMPFHTNWFQIKELEQGLH--------------KFLDWAAQKPDVWFVT 373
H +F+ DVW
Sbjct: 229 AMRDIGG---AWVL------------TNHPFLSGRPGRAAALREFIAEVCAMDDVWVAG 272
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-06
Identities = 58/444 (13%), Positives = 115/444 (25%), Gaps = 161/444 (36%)
Query: 34 CRRFYQ--CVDHHPYVSLCPSGL-----------------------YFDDIKKLCTFKNE 68
+ + + P+ S L YF++++ L ++
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL--YQ-- 178
Query: 69 ARCGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLD-------AEDTP 121
T + + + GL+ +TP
Sbjct: 179 --------TYHVLVGDLIKFSAETLSELIRTT----LDAEKVFTQGLNILEWLENPSNTP 226
Query: 122 -QMILLT------FDGAVNLNNYDHYQKV-------FSDSRKNPNGCPMKGT---FFISH 164
+ LL+ G + L +Y K+ K G +G I+
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-SQGLVTAVAIAE 285
Query: 165 EYSDYSMIQNLAN----------RGHE----IGVETISLQD----------------GLQ 194
S S ++ R +E + L+D L
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 195 DKGYEEWVGEM-----------IGMREILHHFANITRSDIV-GMRAPFLLPGRNTQFEDF 242
+ +++V + I + N ++ +V G P L G N
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLV-------NGAKNLVVSG--PPQSLYGLNLTLR-- 394
Query: 243 GFIYDSSVSVPALKFPVWPYTLD-HKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGG 301
P+ LD +IP + + F +P+ + F
Sbjct: 395 ------KAKAPS--------GLDQSRIPF-SERKLKFSNRF-----LPVASPF------- 427
Query: 302 HCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYM-MP-FHT-NWFQIKELEQGLHK 358
H L + + +D K A + +P + T + ++ L + +
Sbjct: 428 HSHLL----------VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 359 FL-DWAAQKPDVWFVTITQALTWM 381
+ D + P W T T +
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHI 501
Score = 42.3 bits (99), Expect = 3e-04
Identities = 55/302 (18%), Positives = 87/302 (28%), Gaps = 111/302 (36%)
Query: 211 ILHHFANITRSDIVGMRAPFLLP----GRNTQF-EDF---------GFIYDSSVSVPA-- 254
L H ++ L+P +Q E F GF D + PA
Sbjct: 10 TLSH-GSLEHV--------LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 255 -LKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFVESYEGG---HCPYLDQCV 310
KF L + + + F V + L F Y G H L +
Sbjct: 61 VGKF------LGY-VSSLVEPS--KVGQFDQVLNLCLT-EFENCYLEGNDIHA--LAAKL 108
Query: 311 LHNHDSD--EVLEWLKEDFNKYYT----------------------QNKAPYMMPF---- 342
L +D+ + E +K Y T + A + F
Sbjct: 109 LQENDTTLVKTKELIKN----YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 343 -HTNWFQIKELEQGLHK--------FLDWAAQ----------KPDVWFVTITQALTWMTN 383
++F +EL + L++ + ++A+ + F L W+ N
Sbjct: 165 NTDDYF--EEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 384 PKS--SKELLNYDAWKCAKSETAPL----EACNLPNKC-ALGFRPPEAN---ISATRVVM 433
P + K+ L S PL + + LGF P E AT
Sbjct: 222 PSNTPDKDYLLS----IPIS--CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 434 GL 435
GL
Sbjct: 276 GL 277
Score = 30.0 bits (67), Expect = 1.9
Identities = 35/196 (17%), Positives = 49/196 (25%), Gaps = 46/196 (23%)
Query: 222 DIVGMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHEC--KSGTCPT 279
D R P L + E + VP + + E K PT
Sbjct: 2 DAYSTR-PLTL--SHGSLE-------HVLLVPT---ASFFIASQLQ---EQFNKILPEPT 45
Query: 280 KSFPGVWE----VPLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNK 335
+ F E L F+ G+ L + D+VL +F Y +
Sbjct: 46 EGFAADDEPTTPAELVGKFL-----GYVSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 336 APYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWMTNP--KSSKELLNY 393
H L L + D K A P K S L
Sbjct: 100 -----DIHA-------LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-- 145
Query: 394 DAWKCAKSETAPLEAC 409
++ A L A
Sbjct: 146 --FRAVGEGNAQLVAI 159
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 48.6 bits (116), Expect = 3e-06
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 3 CSGSCQKDKSKDVEFVCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKL 62
+D +G Y +P FY C + CP+GL F + K
Sbjct: 385 SEPEHGPSPGQDTFCQGKA---DGLYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKC 441
Query: 63 CT 64
CT
Sbjct: 442 CT 443
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 1e-04
Identities = 60/369 (16%), Positives = 100/369 (27%), Gaps = 134/369 (36%)
Query: 34 CR-----RFYQCVD-------HHPYVSLCPSGLYFDDIKKLCTFKNEARCGPLP-----T 76
C+ RF Q D H + L D++K L + R LP T
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 77 TP---APITEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLTFDGAVN 133
P + I E+ D D + C K TII L+ + +
Sbjct: 326 NPRRLSIIAESIRDGLATWD----NWKHVNCDKLTTIIESSLNVLEPAEY---------- 371
Query: 134 LNNYDHYQK--VFSDSRKNPNG------------CPMKGTFFISHEYSDYSMIQNLANRG 179
+ + VF S P M + ++ YS+++
Sbjct: 372 ---RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV----VVNKLHKYSLVEKQPKES 424
Query: 180 ----HEIGVETISLQDGLQD------------KGYEEWVGEMIGMRE-------ILHHFA 216
I +E + K ++ ++I I HH
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLK 482
Query: 217 NITRSDIVGM-RAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSG 275
NI + + + R FL DF F+ + KI H+ +
Sbjct: 483 NIEHPERMTLFRMVFL---------DFRFL-------------------EQKIRHDSTAW 514
Query: 276 TCP-----------------TKSFPGVWEVPLNA--HFVESYEGG--HCPYLD--QCVLH 312
+ P +E +NA F+ E Y D + L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENLICSKYTDLLRIAL- 572
Query: 313 NHDSDEVLE 321
+ + + E
Sbjct: 573 MAEDEAIFE 581
Score = 28.7 bits (63), Expect = 4.9
Identities = 42/305 (13%), Positives = 80/305 (26%), Gaps = 95/305 (31%)
Query: 158 GTFFIS--HEYSDYSMIQNLANRGHEIGVETISLQDGLQDKGYE-EWVGEMIGMREILHH 214
F+++ + S ++++ L ++I S D + + + R +L
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKS 240
Query: 215 ---------FANITRSDIV---GMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKFPVWPY 262
N+ + + LL R Q D F+ ++ + +L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTL 298
Query: 263 TLD--------------HKIPHECKSGTCPTKSFPGVWEVPLN-AHFVESYEGGHCPYLD 307
T D +P E + P + ES
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTN------------PRRLSIIAESI--------- 337
Query: 308 QCVLHNHDSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQ--IKELEQGLHK--FLDWA 363
D + W D K+ +K T + + LE ++ F +
Sbjct: 338 --------RDGLATW---DNWKHVNCDK-------LTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 364 AQKPDVWFVTIT-QALTWMTNPKSSKELLNYDAWKCAKSETAPLEACNLPNKCALGFRPP 422
P I L L+ W + L + +P
Sbjct: 380 VFPPSAH---IPTILL----------SLI----WFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 423 EANIS 427
E+ IS
Sbjct: 423 ESTIS 427
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural
genomics, seattle structural genomic for infectious
disease; 1.85A {Burkholderia pseudomallei}
Length = 321
Score = 43.0 bits (101), Expect = 1e-04
Identities = 38/219 (17%), Positives = 65/219 (29%), Gaps = 38/219 (17%)
Query: 171 MIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPF 230
+ + GHEI QD E E MR + +T +G
Sbjct: 117 LARAFVELGHEIACHGWR-WIHYQDMTPER---EAEHMRLGMEAIERVTGVRPLGWYTGR 172
Query: 231 LLPGRNTQF-EDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVP 289
P + E GF+YDS Y D + + + VP
Sbjct: 173 DSPNTHRLVAEYGGFLYDSD-----------HYGDDLPFWMDVEVSGGASV---PQLIVP 218
Query: 290 LNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQ-NKAPYMMP--FHTNW 346
+ + + +D +L++ F+ Y + ++AP MM H
Sbjct: 219 YTLDANDMRFATPQGF--------NTADHFFHYLRDAFDVLYEEGDEAPKMMSIGMHCRL 270
Query: 347 ----FQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWM 381
+ + L+ +FLD + VW +
Sbjct: 271 LGRPGRFRALQ----RFLDHIERHDRVWVARRVEIARHW 305
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A
{Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Length = 308
Score = 42.3 bits (99), Expect = 2e-04
Identities = 34/218 (15%), Positives = 60/218 (27%), Gaps = 39/218 (17%)
Query: 171 MIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPF 230
+I+ + GHEI Q + E M E + +T +G
Sbjct: 112 VIRAMVAAGHEICSHGYR-WIDYQYMDEAQ---EREHMLEAIRILTELTGERPLGWYTGR 167
Query: 231 LLPGRNTQFEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPL 290
P + G P W PH +P
Sbjct: 168 TGPNTRRLVMEEGGFLYDC-DTYDDDLPYWEPNNPTGKPH---------------LVIPY 211
Query: 291 NAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQ-NKAPYMMP--FHTNW- 346
+ + + D+ E+LK+ F+ Y + +AP M+ H
Sbjct: 212 TLDTNDMRFTQVQGF--------NKGDDFFEYLKDAFDVLYAEGAEAPKMLSIGLHCRLI 263
Query: 347 ---FQIKELEQGLHKFLDWAAQKPDVWFVTITQALTWM 381
++ L+ +F+++A VWF
Sbjct: 264 GRPARLAALQ----RFIEYAKSHEQVWFTRRVDIARHW 297
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR
{Kluyveromyces marxianus}
Length = 152
Score = 33.6 bits (76), Expect = 0.049
Identities = 14/72 (19%), Positives = 28/72 (38%)
Query: 198 YEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRNTQFEDFGFIYDSSVSVPALKF 257
E+ ++ +R +L +A + R V + + + YD VP++KF
Sbjct: 9 LPEYNEQIPNVRSLLTKWAKVERIQDVQDGLQLDVRLKTDTLLELHIYYDHVYHVPSIKF 68
Query: 258 PVWPYTLDHKIP 269
+W + I
Sbjct: 69 RLWSLDTEEDIS 80
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 33.7 bits (76), Expect = 0.12
Identities = 27/188 (14%), Positives = 38/188 (20%), Gaps = 21/188 (11%)
Query: 1 MMCSGSCQKDKSKDVEFVCPDE-----GGNGNYADPSTCRRFY---QCVDHHPYVSLCPS 52
+C C+ C E + CR FY +CV+ CP
Sbjct: 190 KVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVET------CPP 243
Query: 53 GLYFDDIKKLCTFKNEARCGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSKDGTIIP 112
Y + F + C Y S + P
Sbjct: 244 PYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTP 303
Query: 113 --GGLDAEDTPQMILLTFDGAVNLNNYDHYQKVFSD----SRKNPNGCPMKGTFFIS-HE 165
G T D + + R N E
Sbjct: 304 CLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEE 363
Query: 166 YSDYSMIQ 173
S Y I+
Sbjct: 364 ISGYLKIR 371
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG,
PSI-2, protein structure initiative; HET: CIT; 1.90A
{Agrobacterium tumefaciens str}
Length = 355
Score = 30.6 bits (69), Expect = 1.1
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 315 DSDEVLEWLKEDFNKYYTQNKAPYMMPFHTNWFQIKELEQGLHKFLDWAAQKPDVWFVTI 374
S W N Y P + +H F ++ +F+D+ + I
Sbjct: 115 MSARWPAWANWR-NTAYALTFEPAVFVYHKPSFTTEKPPATRAEFVDYLERHAKEVHGRI 173
Query: 375 TQALTWMTNPKSS 387
+ + S
Sbjct: 174 A-----TYDIERS 181
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native
protein, microsporidian, chitin deacetylase, hydrolase,
inactive; 1.50A {Encephalitozoon cuniculi}
Length = 254
Score = 29.7 bits (67), Expect = 1.5
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 157 KGTFFI---SHEYSDY-SMIQNLANRGHEIGVETISLQD-GLQDKGYEEWVGEMIGMREI 211
K TF + + + GH + + D G Q + + +
Sbjct: 54 KATFSFTVNQKAVGNVGQLYRRAVEEGHNVALRVDPSMDEGYQCLSQDALENNVDREIDT 113
Query: 212 LHHFANITRSDIVGMRAPFLLPGRNTQ 238
+ ++ ++I P N++
Sbjct: 114 I---DGLSGTEIRYAAVPICNGQVNSE 137
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Length = 230
Score = 29.2 bits (66), Expect = 2.1
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 157 KGTFFISHEYSDY--SMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHH 214
+ TFF+ + + ++Q + + GH++G T L GY+ +M + E++
Sbjct: 60 RATFFVLGDAAAQNPGLLQRMRDEGHQVGAHTYDHVS-LPSLGYDGIASQMTRLEEVI-- 116
Query: 215 FANITRSDIVGMRAPF 230
MR P+
Sbjct: 117 -RPALGVAPAYMRPPY 131
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.6
Identities = 4/21 (19%), Positives = 8/21 (38%), Gaps = 6/21 (28%)
Query: 348 QIKELEQGLHKFLDWAAQKPD 368
+K+L+ L + D
Sbjct: 21 ALKKLQASLKLY------ADD 35
>3fpn_B Geobacillus stearothermophilus UVRB interaction domain; UVRA,
nucleotide excision repair, DNA repair, DNA binding
protein; 1.80A {Geobacillus stearothermophilus}
Length = 106
Score = 27.1 bits (61), Expect = 4.3
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 202 VGEMIGMREILHHFANI--TRSDIVGMRAPF 230
VG I +L +I R+DI R F
Sbjct: 19 VGMEIERNALLRRLVDIQYDRNDIDFRRGTF 49
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH
zinc-finger, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 69
Score = 26.4 bits (58), Expect = 4.8
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 296 ESYEGGHCPYLDQCVLHNHDSDEVLEWLK 324
+ Y G CP + C H + E+ EW +
Sbjct: 24 DRYMNGTCPEGNSCKF-AHGNAELHEWEE 51
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 5.7
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 16/52 (30%)
Query: 276 TCPT-KSFPGVWEVPLNAHFVESYEGG--HCPYLDQC--VLHNHDSDEVLEW 322
TCP K +P VE + G C C VL + D EW
Sbjct: 23 TCPECKVYPP--------KIVERFSEGDVVC---ALCGLVLSDKLVDTRSEW 63
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 28.4 bits (63), Expect = 5.9
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 118 EDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDY--SMIQNL 175
+ +++ LTF+ N + K +K TFF+ + +++ +
Sbjct: 232 KKHQKVVALTFNDGPNPATTPQVLETL---AKYD----IKATFFVLGKNVSGNEDLVKRI 284
Query: 176 ANRGHEIG 183
+ GH +G
Sbjct: 285 KSEGHVVG 292
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 27.8 bits (62), Expect = 6.5
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 157 KGTFFI------SHEYSDY-SMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMR 209
+ TFF+ + E I+ + GH +G T + D L + + +M +
Sbjct: 69 RATFFVNGNNWANIEAGSNPDTIRRMRADGHLVGSHTYAHPD-LNTLSSADRISQMRQLE 127
Query: 210 EILHHFANITRSDIVGMRAPF 230
E I MRAP+
Sbjct: 128 EAT---RRIDGFAPKYMRAPY 145
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Length = 240
Score = 27.7 bits (62), Expect = 7.9
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 157 KGTFFISHEYSDY--SMIQNLANRGHEIG 183
GTFF++ + +I+ +++ GH IG
Sbjct: 71 TGTFFVTGHFVKDQPQLIKRMSDEGHIIG 99
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase,
bacterial cell WALL, carbohydrate esterase; 1.7A
{Bacillus anthracis} SCOP: c.6.2.3
Length = 247
Score = 27.7 bits (62), Expect = 8.0
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 157 KGTFFISHEYSDY--SMIQNLANRGHEIG 183
TFF++ Y ++ + + GH IG
Sbjct: 83 PATFFVTGHYIKTQKDLLLRMKDEGHIIG 111
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase,
divale metal cation dependent, carbohydrate esterase
family 4; 1.45A {Streptococcus mutans UA159}
Length = 311
Score = 27.6 bits (61), Expect = 9.2
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 157 KGTFF-----ISHEYSDYSMIQNLANRGHEIG 183
TFF I+ + ++Q GH +G
Sbjct: 135 HATFFLVGCNITDKVKP--ILQRQITEGHALG 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.453
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,980,062
Number of extensions: 414793
Number of successful extensions: 887
Number of sequences better than 10.0: 1
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 41
Length of query: 435
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 339
Effective length of database: 4,021,377
Effective search space: 1363246803
Effective search space used: 1363246803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)