RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10480
(435 letters)
>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus
tridentatus) [TaxId: 6853]}
Length = 73
Score = 53.4 bits (128), Expect = 4e-10
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 19 CPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKLCTFKNEARCG 72
C D+G + +C FY C + CP GL+++ K+C + ++A C
Sbjct: 12 CLDDG---PNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCT 62
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 301
Score = 45.5 bits (107), Expect = 6e-06
Identities = 42/265 (15%), Positives = 69/265 (26%), Gaps = 49/265 (18%)
Query: 117 AEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDYSMIQNLA 176
L + + R P + +I+ +
Sbjct: 63 VRHMSMESLYEYGSRAGV----WRLLKLFKRRNVPLTVFAVAMAAQRN----PEVIRAMV 114
Query: 177 NRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIVGMRAPFLLPGRN 236
GHEI D Q + M+ IL VG P
Sbjct: 115 ADGHEICSHGYRWIDY-QYMDEAQEREHMLEAIRILTELTGQ---RPVGWYTGRTGPNTR 170
Query: 237 TQ-FEDFGFIYDSSVSVPALKFPVWPYTLDHKIPHECKSGTCPTKSFPGVWEVPLNAHFV 295
E+ GF+YDS P W + P P +
Sbjct: 171 RLVMEEGGFLYDSDT--YDDDLPYW---------DPASTAEKPHLVIPYTLDTNDMRFT- 218
Query: 296 ESYEGGHCPYLDQCVLHNHDSDEVLEWLKEDFNKYYTQNK-APYMMP--FHTNW----FQ 348
V ++ ++ ++LK+ F+ Y + AP M+ H +
Sbjct: 219 -------------QVQGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLHCRLIGRPAR 265
Query: 349 IKELEQGLHKFLDWAAQKPDVWFVT 373
+ LE +F+ +A VWF
Sbjct: 266 MAALE----RFIQYAQSHDKVWFAR 286
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 31.0 bits (69), Expect = 0.27
Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 15/111 (13%)
Query: 117 AEDTPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSDY------S 170
E+ + + L D +L + RK + G S Y +
Sbjct: 271 PEEPKRRLWLFIDELASLEKLASLADALTKGRKA-GLRVVAGLQSTSQLDDVYGVKEAQT 329
Query: 171 MIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRS 221
+ + + + L D E + +G E+ +
Sbjct: 330 LRASFRSL--------VVLGGSRTDPKTNEDMSLSLGEHEVERDRYSKNTG 372
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 30.6 bits (68), Expect = 0.29
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 18/118 (15%)
Query: 111 IPGGLDAED--TPQMILLTFDGAVNLNNYDHYQKVFSDSRKNPNGCPMKGTFFISHEYSD 168
+P G P ++ LT+D ++ ++N ++ TFF++
Sbjct: 1 VPVGTPILQCTQPGLVALTYDDGPF----TFTPQLLDILKQN----DVRATFFVNGNNWA 52
Query: 169 Y-------SMIQNLANRGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANIT 219
I+ + GH +G T + D + + +M + E
Sbjct: 53 NIEAGSNPDTIRRMRADGHLVGSHTYAHPDL-NTLSSADRISQMRQLEEATRRIDGFA 109
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 30.5 bits (68), Expect = 0.35
Identities = 13/125 (10%), Positives = 31/125 (24%), Gaps = 9/125 (7%)
Query: 11 KSKDVEFVCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKL---CTFKN 67
K+ + + ++ + A T + V Y + K
Sbjct: 38 KATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSY 97
Query: 68 EARCGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSKDGTIIPGGLDAEDTPQMILLT 127
+ G P T ++ T +++ G D + + +
Sbjct: 98 KRIYGEYPPTKLLVS------EVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVD 151
Query: 128 FDGAV 132
G+
Sbjct: 152 PSGSY 156
>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 149
Score = 29.7 bits (65), Expect = 0.42
Identities = 17/107 (15%), Positives = 25/107 (23%), Gaps = 2/107 (1%)
Query: 3 CSGSCQKDKSKDVEFVCPDEGGNGNYADPSTCRRFYQCVDHHPYVSLCPSGLYFDDIKKL 62
CSG C+ D G G S C + D CP + ++
Sbjct: 33 CSGRCRGKSPSDCCHNQCAAGCTGP--RESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQ 90
Query: 63 CTFKNEARCGPLPTTPAPITEAPTDLATRCDKSSCTLPYCFCSKDGT 109
E + T +C +DG
Sbjct: 91 MDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGV 137
>d1cbha_ g.3.8.1 (A:) Cellobiohydrolase I {Trichoderma reesei,
ct-cbh I [TaxId: 51453]}
Length = 36
Score = 26.6 bits (59), Expect = 0.54
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 23 GGNGNYADPSTCRRFYQCVDHHPYVSLC 50
GG G Y+ P+ C C +PY S C
Sbjct: 9 GGIG-YSGPTVCASGTTCQVLNPYYSQC 35
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and
second domains {Escherichia coli [TaxId: 562]}
Length = 355
Score = 29.0 bits (65), Expect = 1.0
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 283 PGVWEVPLNAHFVESYEGGHCPYLDQCVLH------NHDSDEV---LEWLKEDFNKYYTQ 333
G+ ++ +F ES+ G +D L +D E+ L W ++F +
Sbjct: 185 MGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRYGEDE 244
Query: 334 NKAPY 338
N Y
Sbjct: 245 NNKQY 249
>d2ga1a1 a.4.1.16 (A:1-102) Hypothetical protein Ava_0674 (Alr1493
orthologue) {Anabaena variabilis [TaxId: 1172]}
Length = 102
Score = 26.3 bits (58), Expect = 2.8
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 11/47 (23%)
Query: 178 RGHEIGVETISLQDGLQDKGYEEWVGEMIGMREILHHFANITRSDIV 224
R I V T+ + + +E+L ++ +T D+
Sbjct: 47 RNTRIPVWTL-----------VAYRQQGAPDKELLANYPGLTAEDLS 82
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 157
Score = 25.8 bits (57), Expect = 6.9
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 289 PLNAHFVESYEGGHCPYLDQCVLHNHDSDEVLEWLKED 326
LN + ES E L + VL + +WLKED
Sbjct: 96 QLNKY--ESLE------LCRPVLQQGRKQLLEKWLKED 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.453
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,781,137
Number of extensions: 88435
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 23
Length of query: 435
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,199,356
Effective search space: 416176532
Effective search space used: 416176532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)