BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10481
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1USV|B Chain B, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|D Chain D, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|F Chain F, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|H Chain H, The Structure Of The Complex Between Aha1 And Hsp90
Length = 170
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 21 NVNNWHWTEKNANQWSKDKIKALFLNLEI-EMKTAK-VKLKDIEKCEGEAVINNRKGKLI 78
N NNWHW +KN W+K+ K + +E +K K K+K + EG+ +N RKGK+I
Sbjct: 19 NPNNWHWVDKNCIGWAKEYFKQKLVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVI 78
Query: 79 FFYEWDITINWTGFASGNDTEV---QGKINIPNLS 110
++ IT+ G D +G IN+P ++
Sbjct: 79 SLFDLKITVLIEGHVDSKDGSALPFEGSINVPEVA 113
>pdb|1USU|B Chain B, The Structure Of The Complex Between Aha1 And Hsp90
Length = 170
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 21 NVNNWHWTEKNANQWSKDKIKALFLNLEI-EMKTAK-VKLKDIEKCEGEAVINNRKGKLI 78
N NNWHW +KN W+K+ K + +E +K K K+K + EG+ +N RKGK+I
Sbjct: 19 NPNNWHWVDKNCIGWAKEYFKQKIVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVI 78
Query: 79 FFYEWDITINWTGFASGNDTEV---QGKINIPNLS 110
++ IT+ G D +G IN+P ++
Sbjct: 79 SLFDLKITVLIEGHVDSKDGSALPFEGSINVPEVA 113
>pdb|3N72|A Chain A, Crystal Structure Of Aha-1 From Plasmodium Falciparum,
Pfc0270w
pdb|3N72|B Chain B, Crystal Structure Of Aha-1 From Plasmodium Falciparum,
Pfc0270w
Length = 164
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 23 NNWHWTEKNANQWSKDKIKALFLNLEIEMKTAKVKLKDIEKCEGEAVINNRKGKLIFFYE 82
N + E+N N+W++ IK NL+IE + + +++ G A ++ RKGK I +E
Sbjct: 13 NLYFQGERNYNKWAESYIKYNLSNLKIEKEDLTIYFDNLQ-VSGNACVSIRKGKQINSFE 71
Query: 83 WDITINW--TGFASGNDTEVQGKINIPNLS 110
+ I W + G D G + IP+ S
Sbjct: 72 YIIKFEWLYSKKKEGKDY-FGGSVEIPDFS 100
>pdb|1HCX|A Chain A, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1HCX|B Chain B, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
Length = 127
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 11 WIVEERPDATNVNNWHWTEKN---ANQWSKDKIKALFLNLEIEMKTAKVKLKD----IEK 63
+++ +R NW+W + + A W K K + N E MKT VK KD ++
Sbjct: 23 YMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDA 82
Query: 64 CEGEAVIN 71
EG V N
Sbjct: 83 KEGAMVSN 90
>pdb|1GVM|A Chain A, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1GVM|B Chain B, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1GVM|C Chain C, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1GVM|D Chain D, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1GVM|E Chain E, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
pdb|1GVM|F Chain F, Choline Binding Domain Of The Major Autolysin (C-Lyta)
From Streptococcus Pneumoniae
Length = 136
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 11 WIVEERPDATNVNNWHWTEKN---ANQWSKDKIKALFLNLEIEMKTAKVKLKD----IEK 63
+++ +R NW+W + + A W K K + N E MKT VK KD ++
Sbjct: 32 YMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDA 91
Query: 64 CEGEAVIN 71
EG V N
Sbjct: 92 KEGAMVSN 99
>pdb|2BML|A Chain A, Ofloxacin-Like Antibiotics Inhibit Pneumococcal Cell
Wall Degrading Virulence Factors
pdb|2BML|B Chain B, Ofloxacin-Like Antibiotics Inhibit Pneumococcal Cell
Wall Degrading Virulence Factors
Length = 126
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 23 NNWHWTEKN---ANQWSKDKIKALFLNLEIEMKTAKVKLKD----IEKCEGEAVIN 71
NW+W + + A W K K + N E MKT VK KD ++ EG V N
Sbjct: 34 GNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSN 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,361,770
Number of Sequences: 62578
Number of extensions: 169101
Number of successful extensions: 335
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 16
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)