Query psy10481
Match_columns 129
No_of_seqs 106 out of 292
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 19:17:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09229 Aha1_N: Activator of 100.0 2.3E-33 5.1E-38 205.8 12.6 97 29-125 1-99 (137)
2 KOG2936|consensus 100.0 6.4E-33 1.4E-37 226.1 9.5 111 15-125 1-111 (301)
3 COG5580 Activator of HSP90 ATP 100.0 1.7E-29 3.8E-34 199.8 7.5 94 19-113 3-98 (272)
4 COG4801 Predicted acyltransfer 59.9 19 0.0004 29.7 4.6 50 56-108 63-115 (277)
5 PF02886 LBP_BPI_CETP_C: LBP / 39.5 1.7E+02 0.0038 22.4 7.1 47 64-110 120-168 (238)
6 PF09650 PHA_gran_rgn: Putativ 33.3 53 0.0011 22.2 2.8 19 100-125 47-65 (87)
7 PF09905 DUF2132: Uncharacteri 32.3 32 0.0007 22.5 1.6 12 33-44 52-63 (64)
8 PF15174 PRNT: Prion-related p 31.3 15 0.00033 22.7 -0.1 17 63-79 34-50 (51)
9 PF08174 Anillin: Cell divisio 23.5 2.7E+02 0.0059 19.6 5.8 51 74-124 29-86 (140)
10 KOG4637|consensus 22.3 1.3E+02 0.0028 26.5 3.8 58 24-90 24-84 (464)
No 1
>PF09229 Aha1_N: Activator of Hsp90 ATPase, N-terminal; InterPro: IPR015310 This domain is predominantly found in the protein 'Activator of Hsp90 ATPase', it adopts a secondary structure consisting of an N-terminal alpha-helix leading into a four-stranded meandering antiparallel beta-sheet, followed by a C-terminal alpha-helix. The two helices are packed together, with the beta-sheet curving around them. They bind to the molecular chaperone HSP82 and stimulate its ATPase activity []. ; GO: 0001671 ATPase activator activity, 0051087 chaperone binding, 0005737 cytoplasm; PDB: 1USV_F 1USU_B 3N72_A.
Probab=100.00 E-value=2.3e-33 Score=205.76 Aligned_cols=97 Identities=35% Similarity=0.701 Sum_probs=87.2
Q ss_pred ecCCChhHHHHHHhhhcccEE-eecccEEEEEEeeeeEeeEEEEeecCeeEEEEEEEEEEEEEEEEcC-CCeeEEEEEEc
Q psy10481 29 EKNANQWSKDKIKALFLNLEI-EMKTAKVKLKDIEKCEGEAVINNRKGKLIFFYEWDITINWTGFASG-NDTEVQGKINI 106 (129)
Q Consensus 29 EKd~t~Wak~~l~elL~~~~~-~~~~~~~~i~~v~~v~GdAsv~~RKGK~i~~ydl~i~l~w~g~~~~-~~~~~~G~i~i 106 (129)
||||++||++||+++|.++.+ ++++++++|++|++|+|||+|++||||+|++|||+|+|+|+|+..+ ++.+++|+|+|
T Consensus 1 EKd~t~Wak~~l~elL~~~~~~~~~~~~v~v~~v~~v~GdA~v~~rKGK~i~~fd~~i~l~w~~~~~~~~~~~~~G~i~i 80 (137)
T PF09229_consen 1 EKDCTPWAKDRLKELLPGLSVPEDGDGSVKVTSVKSVEGDASVNQRKGKKIFIFDLKIKLKWEGKLKDGEEKEVKGTIEI 80 (137)
T ss_dssp EEETHHHHHHHHHHHHCT-EC-CSSSCEEEEEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEEEEECTTSSEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhccCEeccCCCcEEEEEEeeeeceEEEEEEEcCcEEEEEEEEEEEEEEEEEcCCCCcEEEEEEEe
Confidence 799999999999999999998 7888999999999999999999999999999999999999999654 34579999999
Q ss_pred ccCCCCCCCCceEEEEEEe
Q psy10481 107 PNLSEENNVDEVEVCICTS 125 (129)
Q Consensus 107 pe~s~d~~~dd~ei~v~~~ 125 (129)
||||+|++.+||+|.|+++
T Consensus 81 pe~s~d~~~~d~~~~v~~~ 99 (137)
T PF09229_consen 81 PEFSSDNDDDDYEFEVTVK 99 (137)
T ss_dssp EEEECCCCTTT---EEEET
T ss_pred cccCCCCCccceEEEEEEc
Confidence 9999999999999999975
No 2
>KOG2936|consensus
Probab=99.98 E-value=6.4e-33 Score=226.05 Aligned_cols=111 Identities=39% Similarity=0.683 Sum_probs=105.4
Q ss_pred cCCCccCCCCceeeecCCChhHHHHHHhhhcccEEeecccEEEEEEeeeeEeeEEEEeecCeeEEEEEEEEEEEEEEEEc
Q psy10481 15 ERPDATNVNNWHWTEKNANQWSKDKIKALFLNLEIEMKTAKVKLKDIEKCEGEAVINNRKGKLIFFYEWDITINWTGFAS 94 (129)
Q Consensus 15 ~r~d~~N~NnWHWeEKd~t~Wak~~l~elL~~~~~~~~~~~~~i~~v~~v~GdAsv~~RKGK~i~~ydl~i~l~w~g~~~ 94 (129)
+|+++.|||||||.||||++||++||.++|.++....++..|++++|++++|||.|++||||+|++|||++++.|.|...
T Consensus 1 er~~~~n~nNwHW~ekn~~~WS~e~f~q~ls~~~~~s~~~~~~i~~vs~~~ge~~vn~RKgK~I~~f~l~i~~~~~G~~~ 80 (301)
T KOG2936|consen 1 ERADVTNPNNWHWVEKNCSPWSKEYLNQKLSGVSSLSGPFSCKITEVSSIDGEARVNQRKGKLISLFDLSIELNFEGGED 80 (301)
T ss_pred CCcccCCCccceeccccchhhhhHHHHhhhcccccccCcceEEEeeeEeccccccccccccceEEEEEeEEEEEEecccc
Confidence 68999999999999999999999999999999998888899999999999999999999999999999999999999545
Q ss_pred CCCeeEEEEEEcccCCCCCCCCceEEEEEEe
Q psy10481 95 GNDTEVQGKINIPNLSEENNVDEVEVCICTS 125 (129)
Q Consensus 95 ~~~~~~~G~i~ipe~s~d~~~dd~ei~v~~~ 125 (129)
+++.+++|++.|||+|+|++.+|++|.|++.
T Consensus 81 ~s~v~~~G~ieiP~lS~en~~~d~e~~vsi~ 111 (301)
T KOG2936|consen 81 GSGVKYKGKIEIPNLSDENEVSDDEFDVSIF 111 (301)
T ss_pred CCccccCceecccccchhccCcCceEeeeec
Confidence 6778999999999999999999999999975
No 3
>COG5580 Activator of HSP90 ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=199.84 Aligned_cols=94 Identities=27% Similarity=0.616 Sum_probs=87.8
Q ss_pred ccCCCCceeeecCCChhHHHHHHhhhcccEEe--ecccEEEEEEeeeeEeeEEEEeecCeeEEEEEEEEEEEEEEEEcCC
Q psy10481 19 ATNVNNWHWTEKNANQWSKDKIKALFLNLEIE--MKTAKVKLKDIEKCEGEAVINNRKGKLIFFYEWDITINWTGFASGN 96 (129)
Q Consensus 19 ~~N~NnWHWeEKd~t~Wak~~l~elL~~~~~~--~~~~~~~i~~v~~v~GdAsv~~RKGK~i~~ydl~i~l~w~g~~~~~ 96 (129)
+.|||||||.+|||+.|||+||++.|+++..+ .+...++|+.|.+|+||+.|+|||||+||+|||.|++..+|+ .++
T Consensus 3 v~nPnNwHWvdkdc~~WakEyfn~kL~s~~a~s~egk~~akItqvsSieGD~~VsqRKgKvI~lfDlkIsme~kge-dgd 81 (272)
T COG5580 3 VKNPNNWHWVDKDCSAWAKEYFNEKLKSRGAESHEGKVMAKITQVSSIEGDSNVSQRKGKVICLFDLKISMECKGE-DGD 81 (272)
T ss_pred ccCCCccccccccccHhHHHHHhhhhcccccccccCcceEEEEEeeeecccchhhhccCceeEEEEEEEEEEEEec-cCC
Confidence 56999999999999999999999999999876 567889999999999999999999999999999999999997 467
Q ss_pred CeeEEEEEEcccCCCCC
Q psy10481 97 DTEVQGKINIPNLSEEN 113 (129)
Q Consensus 97 ~~~~~G~i~ipe~s~d~ 113 (129)
+..+.|.|++||+++|.
T Consensus 82 g~~a~gsi~vpE~a~d~ 98 (272)
T COG5580 82 GCGARGSISVPEKAEDM 98 (272)
T ss_pred cccccccEecchhhccc
Confidence 78899999999999984
No 4
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=59.93 E-value=19 Score=29.71 Aligned_cols=50 Identities=28% Similarity=0.219 Sum_probs=37.8
Q ss_pred EEEEEeeeeEeeEEE---EeecCeeEEEEEEEEEEEEEEEEcCCCeeEEEEEEccc
Q psy10481 56 VKLKDIEKCEGEAVI---NNRKGKLIFFYEWDITINWTGFASGNDTEVQGKINIPN 108 (129)
Q Consensus 56 ~~i~~v~~v~GdAsv---~~RKGK~i~~ydl~i~l~w~g~~~~~~~~~~G~i~ipe 108 (129)
|+++.=..|+++|++ +..+||++.+=||++.-+..-+ ++..++|-|.|.|
T Consensus 63 ~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ie---ggfva~g~Ivirn 115 (277)
T COG4801 63 CKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIE---GGFVAKGWIVIRN 115 (277)
T ss_pred eEeeccEEEcCceEEeccceeeeeEEEecccccccceEEe---cCeeecceEEEcC
Confidence 555555566777766 5679999999999998777554 6678899998855
No 5
>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this C-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC aapears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 2OBD_A 1EWF_A 1BP1_A.
Probab=39.48 E-value=1.7e+02 Score=22.39 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=29.4
Q ss_pred eEeeEEE--EeecCeeEEEEEEEEEEEEEEEEcCCCeeEEEEEEcccCC
Q psy10481 64 CEGEAVI--NNRKGKLIFFYEWDITINWTGFASGNDTEVQGKINIPNLS 110 (129)
Q Consensus 64 v~GdAsv--~~RKGK~i~~ydl~i~l~w~g~~~~~~~~~~G~i~ipe~s 110 (129)
+.+++.+ ....++...+|.+.+.+.-.++..=.+..+.|++++..+.
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~i~~~~l~~~~~l~~~~ 168 (238)
T PF02886_consen 120 LSGSVEVFVVPPNSSKVPLFSLNVDTSADVQLSISNNKLTGSLSLDKFD 168 (238)
T ss_dssp EEEEEEEEEE-TTCGCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEEecCCCceEEEEEEEEEEEEEEEEEEeCCEEEEEEecccEE
Confidence 3444444 4445677888888887777776422334688988885543
No 6
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=33.29 E-value=53 Score=22.24 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=13.2
Q ss_pred EEEEEEcccCCCCCCCCceEEEEEEe
Q psy10481 100 VQGKINIPNLSEENNVDEVEVCICTS 125 (129)
Q Consensus 100 ~~G~i~ipe~s~d~~~dd~ei~v~~~ 125 (129)
++|++.| .+|.+++++.+-
T Consensus 47 v~G~l~V-------~~d~v~l~v~Lg 65 (87)
T PF09650_consen 47 VDGTLDV-------ADDHVRLEVKLG 65 (87)
T ss_pred ceEEEEE-------cCCEEEEEEEcH
Confidence 6899988 345677777653
No 7
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=32.31 E-value=32 Score=22.54 Aligned_cols=12 Identities=25% Similarity=1.035 Sum_probs=10.2
Q ss_pred ChhHHHHHHhhh
Q psy10481 33 NQWSKDKIKALF 44 (129)
Q Consensus 33 t~Wak~~l~elL 44 (129)
|+||+++.+++-
T Consensus 52 TpWAR~KVE~lY 63 (64)
T PF09905_consen 52 TPWAREKVENLY 63 (64)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHhHHHHHHHhc
Confidence 799999998763
No 8
>PF15174 PRNT: Prion-related protein testis-specific
Probab=31.28 E-value=15 Score=22.74 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.6
Q ss_pred eeEeeEEEEeecCeeEE
Q psy10481 63 KCEGEAVINNRKGKLIF 79 (129)
Q Consensus 63 ~v~GdAsv~~RKGK~i~ 79 (129)
.+-||+..++||.|+|+
T Consensus 34 qiPvDcQACnRkskkiy 50 (51)
T PF15174_consen 34 QIPVDCQACNRKSKKIY 50 (51)
T ss_pred cCCcchhhhccccceec
Confidence 35789999999999986
No 9
>PF08174 Anillin: Cell division protein anillin; InterPro: IPR012966 This is a conserved domain in the anillin family of proteins, which are involved in cell division []. In Schizosaccharomyces pombe (Fission yeast, anillin (Mid2) is involved in septin ring organisation and cell separation [, ]. The domain is found adjacent to a 'pleckstrin homology' (PH) domain. The PH domain occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton (IPR001849 from INTERPRO).
Probab=23.50 E-value=2.7e+02 Score=19.61 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=27.7
Q ss_pred cCeeEEEEEEEEEEE---EEEEE---cCCCeeEEEEEEccc-CCCCCCCCceEEEEEE
Q psy10481 74 KGKLIFFYEWDITIN---WTGFA---SGNDTEVQGKINIPN-LSEENNVDEVEVCICT 124 (129)
Q Consensus 74 KGK~i~~ydl~i~l~---w~g~~---~~~~~~~~G~i~ipe-~s~d~~~dd~ei~v~~ 124 (129)
+++..+.|=.-++.. |..+. ..+|.-....|.+|+ |...+-.-|+++.+.+
T Consensus 29 ~~~~~~~~~~l~k~~~~~~~~t~~~~~~dgs~~~~~i~f~~~~~~~~~~~dF~v~vev 86 (140)
T PF08174_consen 29 KGKRRFAFFCLLKYGPEEWDATFLVVARDGSFARTDICFPDTFEFSNVGPDFEVTVEV 86 (140)
T ss_pred CCCceEEEEEEEecCCceEEEEeeEEccCcccccceEecCceeeecccCCCcEEEEEE
Confidence 333333333334433 66653 334434456788888 6666555567776654
No 10
>KOG4637|consensus
Probab=22.25 E-value=1.3e+02 Score=26.51 Aligned_cols=58 Identities=21% Similarity=0.453 Sum_probs=43.6
Q ss_pred CceeeecCCChhHHHHHHhhhcccEEeecccEEEEEEeeeeEeeEEEEeecC---eeEEEEEEEEEEEEE
Q psy10481 24 NWHWTEKNANQWSKDKIKALFLNLEIEMKTAKVKLKDIEKCEGEAVINNRKG---KLIFFYEWDITINWT 90 (129)
Q Consensus 24 nWHWeEKd~t~Wak~~l~elL~~~~~~~~~~~~~i~~v~~v~GdAsv~~RKG---K~i~~ydl~i~l~w~ 90 (129)
.|-|-. =+++..++.|.+. +++++-|-+-+++-||-+++.||| |+|-+|--+=+..|.
T Consensus 24 ~WYWgd-----isReev~~~L~d~----PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~ 84 (464)
T KOG4637|consen 24 EWYWGD-----ISREEVNKKLRDQ----PDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFS 84 (464)
T ss_pred cccccc-----cCHHHHHHHhcCC----CCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCC
Confidence 477743 2466777777654 567777777778999999999999 999998877666665
Done!