Query psy10481
Match_columns 129
No_of_seqs 106 out of 292
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 19:18:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1usu_B AHA1; chaperone/complex 100.0 2.1E-46 7.1E-51 284.7 6.0 111 15-125 13-128 (170)
2 3n72_A Putative activator of H 100.0 2.1E-40 7.3E-45 250.5 5.7 105 20-125 10-116 (164)
3 3qii_A PHD finger protein 20; 49.9 4 0.00014 27.2 0.3 11 1-13 29-39 (85)
4 3p8d_A Medulloblastoma antigen 45.2 5.2 0.00018 25.4 0.3 11 1-13 14-24 (67)
5 3uv1_A DER F 7 allergen; super 30.6 1.2E+02 0.0042 21.7 5.9 39 55-93 58-103 (196)
6 1y43_A Aspergillopepsin II lig 28.3 63 0.0022 18.3 3.1 26 87-112 5-32 (39)
7 2jvw_A Uncharacterized protein 21.6 41 0.0014 22.4 1.6 13 33-45 58-70 (88)
8 3cfu_A Uncharacterized lipopro 20.6 1.6E+02 0.0055 20.8 4.8 40 47-86 6-56 (159)
9 2izx_A CAMP-dependent protein 15.9 44 0.0015 18.3 0.6 15 31-45 25-39 (41)
10 3mcb_A Nascent polypeptide-ass 12.2 1.2E+02 0.004 18.2 1.8 19 61-79 7-25 (54)
No 1
>1usu_B AHA1; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.83.2.1 PDB: 1usv_B
Probab=100.00 E-value=2.1e-46 Score=284.71 Aligned_cols=111 Identities=28% Similarity=0.538 Sum_probs=86.7
Q ss_pred cCCCccCCCCceeeecCCChhHHHHHHhhhcccEEee--cccEEEEEEeeeeEeeEEEEeecCeeEEEEEEEEEEEEEEE
Q psy10481 15 ERPDATNVNNWHWTEKNANQWSKDKIKALFLNLEIEM--KTAKVKLKDIEKCEGEAVINNRKGKLIFFYEWDITINWTGF 92 (129)
Q Consensus 15 ~r~d~~N~NnWHWeEKd~t~Wak~~l~elL~~~~~~~--~~~~~~i~~v~~v~GdAsv~~RKGK~i~~ydl~i~l~w~g~ 92 (129)
-|+|+||||||||+||||++||++||+++|.++.+++ +++.++|++|++|+|||+|++||||+||+|||+|+|+|+|+
T Consensus 13 ~~~d~~NvNNWHWeEKn~t~Wak~~lkelL~~~~~e~~~~~~~~~i~~V~~v~GDA~V~~RKGK~i~~yD~~i~l~w~g~ 92 (170)
T 1usu_B 13 ASMVVNNPNNWHWVDKNCIGWAKEYFKQKIVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVISLFDLKITVLIEGH 92 (170)
T ss_dssp -------------CCEETHHHHHHHHHHHHTTCBC-----CCEEEECCCCEEEEECEECCC-CCCCCCCEEEEEEEEEEE
T ss_pred ccccCCCCcccccccCCCCHHHHHHHHHHhccCEeeccCCCcEEEEEEeeEEeeEEEEEEecCcEEEEEEEEEEEEEEEE
Confidence 3789999999999999999999999999999999998 88999999999999999999999999999999999999998
Q ss_pred EcCCCee---EEEEEEcccCCCCCCCCceEEEEEEe
Q psy10481 93 ASGNDTE---VQGKINIPNLSEENNVDEVEVCICTS 125 (129)
Q Consensus 93 ~~~~~~~---~~G~i~ipe~s~d~~~dd~ei~v~~~ 125 (129)
.++++.+ ++|+|+|||||+|+++|||+|+|++.
T Consensus 93 ~~~~~~~~~~v~G~i~IPe~s~d~~~dd~e~~v~~~ 128 (170)
T 1usu_B 93 VDSKDGSALPFEGSINVPEVAFDSEASSYQFDISIF 128 (170)
T ss_dssp CCC----CCEEEEEEEEEEEETTCCGGGCCCEEEET
T ss_pred ECCCCccceeeEEEEEeccccCCCCCcccEEEEEEc
Confidence 6545567 99999999999999899999999984
No 2
>3n72_A Putative activator of HSP90; malaria, structural genomics, heat shock, structural genomic consortium, SGC, chaperone activator; 1.77A {Plasmodium falciparum}
Probab=100.00 E-value=2.1e-40 Score=250.46 Aligned_cols=105 Identities=25% Similarity=0.391 Sum_probs=88.5
Q ss_pred cCCCCceeeecCCChhHHHHHHhhhcccEEeecccEEEEEEeeeeEeeEEEEeecCeeEEEEEEEEEEEEEEEEc-CCCe
Q psy10481 20 TNVNNWHWTEKNANQWSKDKIKALFLNLEIEMKTAKVKLKDIEKCEGEAVINNRKGKLIFFYEWDITINWTGFAS-GNDT 98 (129)
Q Consensus 20 ~N~NnWHWeEKd~t~Wak~~l~elL~~~~~~~~~~~~~i~~v~~v~GdAsv~~RKGK~i~~ydl~i~l~w~g~~~-~~~~ 98 (129)
.-+|||||+||||++||++||+++|.++.++++++.|+|++ .+|+|||+|++||||+||+|||+|+|+|+|+.. +++.
T Consensus 10 ~~~nNWHW~EKn~t~Wak~~lkelL~~l~~e~~~~~~~i~~-~~veGDA~V~~RKGK~I~~yDl~i~l~w~g~~~~~~~~ 88 (164)
T 3n72_A 10 GRENLYFQGERNYNKWAESYIKYNLSNLKIEKEDLTIYFDN-LQVSGNACVSIRKGKQINSFEYIIKFEWLYSKKKEGKD 88 (164)
T ss_dssp HHHHHHCCCCEECHHHHHHHHHHHHHTCEEC----CEEEEE-EEEEEEEEEEEETTEEEEEEEEEEEEEEEEC-------
T ss_pred CCCCCCcccccCCCHHHHHHHHHHhcccEeecCCeEEEEEE-EEEEeEEEEEEecCcEEEEEEEEEEEEEEEEecCCCCc
Confidence 34699999999999999999999999999998889999999 599999999999999999999999999999863 3456
Q ss_pred eEEEEEEcccCCCCC-CCCceEEEEEEe
Q psy10481 99 EVQGKINIPNLSEEN-NVDEVEVCICTS 125 (129)
Q Consensus 99 ~~~G~i~ipe~s~d~-~~dd~ei~v~~~ 125 (129)
+++|+|+|||||+|+ ++|||+|+|++.
T Consensus 89 ~~~G~i~IPe~s~dn~e~dd~ei~vs~~ 116 (164)
T 3n72_A 89 YFGGSVEIPDFSTFSLEENDYAINIERT 116 (164)
T ss_dssp CEEEEEEEEEEETTHHHHTCCCCEEC--
T ss_pred EEeEEEEeceecCCCCcccceEEEEEEc
Confidence 899999999999998 678999999874
No 3
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=49.89 E-value=4 Score=27.19 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=9.0
Q ss_pred CCccCCCCCceEe
Q psy10481 1 MAKWGEGDPRWIV 13 (129)
Q Consensus 1 mak~gegdprwiv 13 (129)
||+| ||.||+-
T Consensus 29 lArW--~D~~yYP 39 (85)
T 3qii_A 29 LACW--SDCRFYP 39 (85)
T ss_dssp EEEC--TTSCEEE
T ss_pred EEEe--CCCCEee
Confidence 7888 7888875
No 4
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=45.22 E-value=5.2 Score=25.36 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=7.9
Q ss_pred CCccCCCCCceEe
Q psy10481 1 MAKWGEGDPRWIV 13 (129)
Q Consensus 1 mak~gegdprwiv 13 (129)
||+| ||.||+-
T Consensus 14 mArW--~D~~yYp 24 (67)
T 3p8d_A 14 LACW--SDCRFYP 24 (67)
T ss_dssp EEEC--TTSCEEE
T ss_pred EEEc--CCCCEee
Confidence 6777 6777764
No 5
>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae}
Probab=30.57 E-value=1.2e+02 Score=21.69 Aligned_cols=39 Identities=8% Similarity=0.215 Sum_probs=26.6
Q ss_pred EEEEEEeeee--EeeEEEEeecCeeEEEEEE-----EEEEEEEEEE
Q psy10481 55 KVKLKDIEKC--EGEAVINNRKGKLIFFYEW-----DITINWTGFA 93 (129)
Q Consensus 55 ~~~i~~v~~v--~GdAsv~~RKGK~i~~ydl-----~i~l~w~g~~ 93 (129)
...++.++++ .|+|++...-+......++ .+.+.|+...
T Consensus 58 ng~l~GLSs~~R~Gd~~~~~~~~~~~~~~~vg~~~~~v~~~y~~~~ 103 (196)
T 3uv1_A 58 NIEARGLKQMKRQGDANVKGEEGIVKAHLLIGVHDDIVSMEYDLAY 103 (196)
T ss_dssp EEEEECGGGEEESSSCEEEEETTEEEEEEEEEESSSCEEEEEEEEE
T ss_pred EEEEEccccEEEccceEEEEcCCeEEEEEEeeeceeEEEEEEEEEE
Confidence 3567777777 6999999888776655555 3556665543
No 6
>1y43_A Aspergillopepsin II light chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=28.28 E-value=63 Score=18.26 Aligned_cols=26 Identities=35% Similarity=0.759 Sum_probs=19.0
Q ss_pred EEEEEEEc-CCC-eeEEEEEEcccCCCC
Q psy10481 87 INWTGFAS-GND-TEVQGKINIPNLSEE 112 (129)
Q Consensus 87 l~w~g~~~-~~~-~~~~G~i~ipe~s~d 112 (129)
-+|.|.+. +.+ ..+.|++++|..+.-
T Consensus 5 sNWaGAVl~g~~~t~VsgtftVP~~s~~ 32 (39)
T 1y43_A 5 SNWAGAVLIGDGYTKVTGEFTVPSVSAG 32 (39)
T ss_dssp SSEEEEEEECSCEEEEEEEEECCCCBCC
T ss_pred ccceEEEecCCCeEEEEEEEECCcccCC
Confidence 46888753 333 469999999998754
No 7
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=21.56 E-value=41 Score=22.39 Aligned_cols=13 Identities=15% Similarity=1.043 Sum_probs=11.0
Q ss_pred ChhHHHHHHhhhc
Q psy10481 33 NQWSKDKIKALFL 45 (129)
Q Consensus 33 t~Wak~~l~elL~ 45 (129)
|+||+++.+.+-.
T Consensus 58 TpWAR~KVE~lYL 70 (88)
T 2jvw_A 58 TDWARERVENIYL 70 (88)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHH
Confidence 7999999998754
No 8
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=20.57 E-value=1.6e+02 Score=20.82 Aligned_cols=40 Identities=3% Similarity=0.109 Sum_probs=25.5
Q ss_pred cEEeecccEEEEEEeeeeEeeEE--------EEe---ecCeeEEEEEEEEE
Q psy10481 47 LEIEMKTAKVKLKDIEKCEGEAV--------INN---RKGKLIFFYEWDIT 86 (129)
Q Consensus 47 ~~~~~~~~~~~i~~v~~v~GdAs--------v~~---RKGK~i~~ydl~i~ 86 (129)
-++..++..++|.++....|+.. ..- .+|+...+-++.|+
T Consensus 6 etv~~~~~evTVnsv~~~~~~e~~~~~~~~~~~p~~~~~G~~fviV~VTIe 56 (159)
T 3cfu_A 6 ETFKAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTME 56 (159)
T ss_dssp CEEEETTEEEEEEEEEEECSSCBEESSCC------CBCCCSEEEEEEEEEE
T ss_pred CeEEECCEEEEEEEEEEcCCCceeecccccccCccccCCCCEEEEEEEEEE
Confidence 34566778888888887766544 333 56777777666664
No 9
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=15.93 E-value=44 Score=18.29 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=12.9
Q ss_pred CCChhHHHHHHhhhc
Q psy10481 31 NANQWSKDKIKALFL 45 (129)
Q Consensus 31 d~t~Wak~~l~elL~ 45 (129)
|...||.+||+.++.
T Consensus 25 di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 25 DLVEFAVEYFTRLRE 39 (41)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 778999999998764
No 10
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=12.16 E-value=1.2e+02 Score=18.16 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.0
Q ss_pred eeeeEeeEEEEeecCeeEE
Q psy10481 61 IEKCEGEAVINNRKGKLIF 79 (129)
Q Consensus 61 v~~v~GdAsv~~RKGK~i~ 79 (129)
++.+.|=..|++||.|-+.
T Consensus 7 lk~v~gI~rVti~K~~~~l 25 (54)
T 3mcb_A 7 LRQVTGVTRVTIRKSKNIL 25 (54)
T ss_dssp CEECTTEEEEEEESSSSEE
T ss_pred CEECCCEEEEEEEeCCCEE
Confidence 4678888899999998543
Done!