RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10481
         (129 letters)



>gnl|CDD|214964 smart01000, Aha1_N, Activator of Hsp90 ATPase, N-terminal.  This
           domain is predominantly found in the protein 'Activator
           of Hsp90 ATPase', it adopts a secondary structure
           consisting of an N-terminal alpha-helix leading into a
           four-stranded meandering antiparallel beta-sheet,
           followed by a C-terminal alpha-helix. The two helices
           are packed together, with the beta-sheet curving around
           them. They bind to the molecular chaperone HSP82 and
           stimulate its ATPase activity.
          Length = 134

 Score = 98.9 bits (247), Expect = 1e-27
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 2/96 (2%)

Query: 29  EKNANQWSKDKIKALFLNLEIEMKTAKVKLK--DIEKCEGEAVINNRKGKLIFFYEWDIT 86
           EK+   W+K+ +K L + L+I  +  + K++   +    G+A ++ RKGKLI  Y+  IT
Sbjct: 1   EKDCTPWAKEYLKELLVGLKISSEDEEGKIEISSVSSVSGDASVSQRKGKLICLYDLKIT 60

Query: 87  INWTGFASGNDTEVQGKINIPNLSEENNVDEVEVCI 122
           + W+G  + +  +V+G I IP LS +N  D+ +  I
Sbjct: 61  LKWSGTVAKDGKKVKGSIEIPELSHDNEEDDYQFEI 96


>gnl|CDD|220147 pfam09229, Aha1_N, Activator of Hsp90 ATPase, N-terminal.  Members
           of this family, which are predominantly found in the
           protein 'Activator of Hsp90 ATPase' adopt a secondary
           structure consisting of an N-terminal alpha-helix
           leading into a four-stranded meandering antiparallel
           beta-sheet, followed by a C-terminal alpha-helix. The
           two helices are packed together, with the beta-sheet
           curving around them. They bind to the molecular
           chaperone HSP82 and stimulate its ATPase activity.
          Length = 137

 Score = 94.6 bits (236), Expect = 5e-26
 Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 29  EKNANQWSKDKIKALFLNLEI-EMKTAKVKLKDIEKCEGEAVINNRKGKLIFFYEWDITI 87
           EKN   W+K+ +K L   L++ E    KV++ ++   EG+A ++ RKGK+I  ++  IT+
Sbjct: 1   EKNCTPWAKEYLKELLKGLKVLEDDDGKVEITEVSSVEGDASVSQRKGKVICIFDLKITL 60

Query: 88  NWTGF-ASGNDTEVQGKINIPNLSEENNVDEVEV 120
            W+G      + +V+G I IP LS +N  D+ E 
Sbjct: 61  EWSGETKDEEEEKVKGTIEIPELSHDNEEDDYEF 94


>gnl|CDD|227867 COG5580, COG5580, Activator of HSP90 ATPase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 272

 Score = 66.1 bits (161), Expect = 5e-14
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 19  ATNVNNWHWTEKNANQWSKDKIKALFLNLE---IEMKTAKVKLKDIEKCEGEAVINNRKG 75
             N NNWHW +K+ + W+K+       +      E K    K+  +   EG++ ++ RKG
Sbjct: 3   VKNPNNWHWVDKDCSAWAKEYFNEKLKSRGAESHEGKV-MAKITQVSSIEGDSNVSQRKG 61

Query: 76  KLIFFYEWDITINWTGFASGNDTEVQGKINIPNLSEE 112
           K+I  ++  I++   G   G+    +G I++P  +E+
Sbjct: 62  KVICLFDLKISMECKG-EDGDGCGARGSISVPEKAED 97


>gnl|CDD|215506 PLN02937, PLN02937, Putative isoaspartyl peptidase/L-asparaginase.
          Length = 414

 Score = 26.8 bits (59), Expect = 4.0
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 5   GEGDPRWIVEERPD----ATNVNNWHWTEKNANQWSKDK 39
           GEG  +W   +  D          W  TE+   QW K K
Sbjct: 138 GEGARQWAKSKGIDLPETVEEAEKWLVTERAKEQWKKYK 176


>gnl|CDD|234496 TIGR04198, paramyx_RNAcap, mRNA capping enzyme, paramyxovirus
           family.  This model represents a common C-terminal
           region shared by paramyxovirus-like RNA-dependent RNA
           polymerases (see model pfam00946). Polymerase proteins
           described by these two models are often called L protein
           (large polymerase protein). Capping of mRNA requires RNA
           triphosphatase and guanylyl transferase activities,
           demonstrated for the rinderpest virus L protein and at
           least partially localized to the region of this model.
          Length = 893

 Score = 25.9 bits (57), Expect = 7.0
 Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 6   EGDPRWIVEERPDATNVNNWHWTEKNANQWSKDKIKALFLNLEI 49
             +  W      D T++  W +     NQ   D +  +  ++E+
Sbjct: 591 NFEDLWN--GPSDLTDITTWDYFNFILNQVPLDSLDLIHCDMEL 632


>gnl|CDD|238338 cd00604, IPT_CGTD, IPT domain (domain D) of cyclodextrin
           glycosyltransferase (CGTase) and similar enzymes. These
           enzymes are involved in the enzymatic hydrolysis of
           alpha-1,4 linkages of starch polymers and belong to the
           glycosyl hydrolase family 13. Most consist of three
           domains (A,B,C) but CGTase is more complex and has two
           additional domains (D,E). The function of the IPT/D
           domain is unknown.
          Length = 81

 Score = 24.6 bits (54), Expect = 8.4
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 85  ITINWTGFASGNDTEVQGKINIPNLSEENNVDEVEV 120
           +TI+  GF S   T   G      LS  +    VEV
Sbjct: 17  VTISGEGFGSTGGTVYFGGTAAEVLSWSDTSIVVEV 52


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0752    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,518,102
Number of extensions: 552548
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 20
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)