RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10481
         (129 letters)



>1usu_B AHA1; chaperone/complex, chaperone, activator, HSP90; 2.15A
           {Saccharomyces cerevisiae} SCOP: d.83.2.1 PDB: 1usv_B
          Length = 170

 Score =  116 bits (293), Expect = 1e-34
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 21  NVNNWHWTEKNANQWSKDKIKALFLNLEIEMK--TAKVKLKDIEKCEGEAVINNRKGKLI 78
           N NNWHW +KN   W+K+  K   + +E          K+K +   EG+  +N RKGK+I
Sbjct: 19  NPNNWHWVDKNCIGWAKEYFKQKIVGVEAGSVKDKKYAKIKSVSSIEGDCEVNQRKGKVI 78

Query: 79  FFYEWDITINWTGFA---SGNDTEVQGKINIPNLSEENNVDEVEVCI 122
             ++  IT+   G      G+    +G IN+P ++ ++     +  I
Sbjct: 79  SLFDLKITVLIEGHVDSKDGSALPFEGSINVPEVAFDSEASSYQFDI 125


>3n72_A Putative activator of HSP90; malaria, structural genomics, heat
           shock, structural genomic consortium, SGC, chaperone
           activator; 1.77A {Plasmodium falciparum}
          Length = 164

 Score =  105 bits (264), Expect = 2e-30
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 18  DATNVNNWHWTEKNANQWSKDKIKALFLNLEIEMKTAKVKLKDIEKCEGEAVINNRKGKL 77
            +   N +   E+N N+W++  IK    NL+IE +   +   ++ +  G A ++ RKGK 
Sbjct: 8   SSGRENLYFQGERNYNKWAESYIKYNLSNLKIEKEDLTIYFDNL-QVSGNACVSIRKGKQ 66

Query: 78  IFFYEWDITINWTGFASGND-TEVQGKINIPNLSEENNVDEVEVCICTSI 126
           I  +E+ I   W             G + IP+ S   +++E +  I    
Sbjct: 67  INSFEYIIKFEWLYSKKKEGKDYFGGSVEIPDFSTF-SLEENDYAINIER 115


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.6 bits (60), Expect = 0.82
 Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 8/30 (26%)

Query: 29 EKNA--------NQWSKDKIKALFLNLEIE 50
          EK A          ++ D   AL +   +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47


>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
          Length = 291

 Score = 26.8 bits (60), Expect = 2.2
 Identities = 4/11 (36%), Positives = 7/11 (63%)

Query: 11  WIVEERPDATN 21
           ++ EE P+ T 
Sbjct: 271 FLPEEAPEETY 281


>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A
           {Burkholderia SP} PDB: 1y37_A
          Length = 304

 Score = 26.5 bits (59), Expect = 2.5
 Identities = 4/11 (36%), Positives = 6/11 (54%)

Query: 11  WIVEERPDATN 21
           + V+  PD T 
Sbjct: 272 FFVDRFPDDTA 282


>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
           hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris}
           PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
          Length = 306

 Score = 26.5 bits (59), Expect = 2.6
 Identities = 5/11 (45%), Positives = 7/11 (63%)

Query: 11  WIVEERPDATN 21
           ++ EE PD T 
Sbjct: 283 FLPEEAPDQTA 293


>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
           1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
           3pi6_A
          Length = 301

 Score = 26.1 bits (58), Expect = 3.7
 Identities = 4/11 (36%), Positives = 5/11 (45%)

Query: 11  WIVEERPDATN 21
           W+ EE     N
Sbjct: 274 WLPEECAAPMN 284


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 26.0 bits (57), Expect = 4.3
 Identities = 6/29 (20%), Positives = 10/29 (34%)

Query: 97   DTEVQGKINIPNLSEENNVDEVEVCICTS 125
            D  ++    +   S+    D V     TS
Sbjct: 1416 DKILEQFEYVLYPSKTLKTDGVRAVSITS 1444


>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold,
           epoxide degradation, epichlorohydrin; 2.10A
           {Agrobacterium tumefaciens} SCOP: c.69.1.11
          Length = 294

 Score = 25.7 bits (57), Expect = 5.8
 Identities = 2/11 (18%), Positives = 7/11 (63%)

Query: 11  WIVEERPDATN 21
           +++ E+P+   
Sbjct: 276 FLMVEKPEIAI 286


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,051,067
Number of extensions: 107675
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 14
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.5 bits)