BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10482
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 29 YPHPQLCDQFYKCTNGTLTLEQCENGLLY 57
YP+P+ FY C G L + C GL++
Sbjct: 407 YPNPRERSSFYSCAAGRLFQQSCPTGLVF 435
>pdb|2Z9Z|A Chain A, Crystal Structure Of Cert Start Domain(N504a Mutant), In
Complex With C10-Diacylglycerol
Length = 255
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 64 HNHCNYYWGVDCGNRKADWQ 83
H CNY+W VD N DW+
Sbjct: 87 HEVCNYFWNVDVRN---DWE 103
>pdb|2E3M|A Chain A, Crystal Structure Of Cert Start Domain
pdb|2E3N|A Chain A, Crystal Structure Of Cert Start Domain In Complex With C6-
Ceramide (P212121)
pdb|2E3O|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C16- Ceramide (P212121)
pdb|2E3P|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C16- Cearmide (P1)
pdb|2E3P|B Chain B, Crystal Structure Of Cert Start Domain In Complex With
C16- Cearmide (P1)
pdb|2E3Q|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (p212121)
pdb|2E3R|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (P1)
pdb|2E3R|B Chain B, Crystal Structure Of Cert Start Domain In Complex With
C18- Ceramide (P1)
pdb|2E3S|A Chain A, Crystal Structure Of Cert Start Domain Co-Crystallized
With C24-Ceramide (P21)
pdb|2Z9Y|A Chain A, Crystal Structure Of Cert Start Domain In Complex With
C10- Diacylglycerol
pdb|3H3Q|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-13
pdb|3H3Q|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-13
pdb|3H3R|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-14
pdb|3H3R|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-14
pdb|3H3S|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-15
pdb|3H3S|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-15
pdb|3H3T|A Chain A, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-16
pdb|3H3T|B Chain B, Crystal Structure Of The Cert Start Domain In Complex With
Hpa-16
Length = 255
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 64 HNHCNYYWGVDCGNRKADWQ 83
H CNY+W VD N DW+
Sbjct: 87 HEVCNYFWNVDVRN---DWE 103
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 46 LTLEQCENGLLYD--GNGNVHNHCNYYW 71
+ +E CENG LYD + N++ + YW
Sbjct: 92 IQMEYCENGTLYDLIHSENLNQQRDEYW 119
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 33 QLCDQFYKCTNGTLTLEQCENGLL 56
+L +++Y C NG LT +C+ L+
Sbjct: 317 KLKERYYACKNGELTCGECKRYLI 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.490
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,305,927
Number of Sequences: 62578
Number of extensions: 137348
Number of successful extensions: 128
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 9
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)