Query psy10482
Match_columns 84
No_of_seqs 132 out of 1024
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:19:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dqc_A Tachycitin; disulfide-r 99.8 6E-19 2.1E-23 102.5 4.4 62 13-80 5-66 (74)
2 1wb0_A Chitinase 1, chitotrios 99.2 8.5E-13 2.9E-17 97.0 0.0 49 17-70 396-445 (445)
3 3ssb_I IMPI alpha, inducible m 60.0 2 6.9E-05 20.3 0.1 22 50-75 8-29 (32)
4 3c75_L Methylamine dehydrogena 59.9 1.2 4.1E-05 29.4 -0.9 42 29-71 74-122 (188)
5 2p3f_N Anti-coagulant protein 54.0 5 0.00017 22.5 1.1 24 49-75 49-72 (78)
6 2bz6_L Blood coagulation facto 51.5 10 0.00035 19.3 2.1 41 34-79 8-50 (53)
7 3sjl_C Methylamine dehydrogena 50.6 1.7 6E-05 27.1 -1.2 41 30-71 18-65 (137)
8 2oiz_D Aromatic amine dehydrog 50.0 1.6 5.5E-05 27.2 -1.5 41 30-71 23-70 (135)
9 1co7_I BPTI, bovine pancreatic 49.0 4.1 0.00014 23.8 0.3 21 54-77 54-74 (99)
10 1kig_L Factor XA; glycoprotein 41.9 16 0.00056 18.3 1.9 40 34-78 7-47 (51)
11 1ccv_A AMCI, chymotrypsin inhi 36.4 8.6 0.00029 19.8 0.3 18 49-70 36-53 (56)
12 2b5b_A Defensin; antibiotic; N 36.3 8.7 0.0003 18.2 0.2 12 32-43 21-32 (36)
13 2wph_E Coagulation factor IXA 35.0 26 0.00089 18.2 2.1 38 34-76 8-47 (59)
14 1iyc_A Scarabaecin; antifungal 34.3 18 0.00062 17.1 1.2 13 49-61 16-28 (36)
15 3urf_Z Tumor necrosis factor r 32.7 14 0.00046 23.6 0.8 44 15-60 79-133 (171)
16 1xak_A SARS ORF7A accessory pr 32.3 23 0.0008 19.7 1.6 21 38-58 7-29 (83)
17 3f1s_B Vitamin K-dependent pro 29.1 37 0.0013 22.5 2.5 43 32-79 10-53 (283)
18 2c4f_L Coagulation factor VII 28.8 32 0.0011 20.6 2.0 39 40-81 101-141 (142)
19 1xu2_R Tumor necrosis factor r 28.5 21 0.00071 18.4 0.9 16 49-67 2-17 (47)
20 3u3p_A Tumor necrosis factor r 27.9 21 0.00071 25.3 1.1 43 16-60 86-139 (313)
21 1kli_L Factor VIIA; extrinsic 26.9 31 0.0011 18.5 1.5 40 34-78 14-55 (69)
22 2jkh_L Factor X light chain; p 26.7 67 0.0023 16.0 3.1 41 33-78 9-50 (55)
23 3k51_B Decoy receptor 3; DCR3, 25.8 19 0.00063 23.0 0.5 43 16-60 82-135 (176)
24 2xrb_A Complement regulatory p 25.7 1.4E+02 0.0048 19.8 5.0 24 38-61 65-91 (290)
25 2kn0_A FN14; tweak, TNF recept 25.4 33 0.0011 18.6 1.4 15 50-67 4-18 (66)
26 4f4o_C Haptoglobin; globin fol 23.1 58 0.002 22.5 2.7 45 16-60 29-77 (347)
27 1bx7_A Hirustasin; anti-coagul 23.1 85 0.0029 16.5 2.7 18 48-70 30-47 (55)
28 2vh0_B Activated factor XA lig 20.3 83 0.0028 18.5 2.7 36 40-78 94-130 (134)
No 1
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1
Probab=99.75 E-value=6e-19 Score=102.45 Aligned_cols=62 Identities=24% Similarity=0.451 Sum_probs=55.7
Q ss_pred ccCCCCCCCCCCCCeEccCccCCcccEEcCCCceeEeeCCCCCeEeccCCCccCCCCCCCcccCCCCc
Q psy10482 13 LLQAPSGCPEPYGVQTYPHPQLCDQFYKCTNGTLTLEQCENGLLYDGNGNVHNHCNYYWGVDCGNRKA 80 (84)
Q Consensus 13 ~~~~~~~C~~~~g~~~~~~p~~C~~y~~C~~G~~~~~~Cp~Gl~Fd~~~~~~~~C~~~~~v~C~~r~~ 80 (84)
.......|+. +| +++||.+|++||+|.+|.++++.||.||+||+++ +.||||++|+|..++.
T Consensus 5 ~~~~~~~C~~-~G--~~~~p~dC~~fy~C~~G~~~~~~Cp~Gl~Fn~~~---~~Cd~p~~v~C~~~~~ 66 (74)
T 1dqc_A 5 RCGRYSPCLD-DG--PNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYL---KVCDWPSKAGCTSVNK 66 (74)
T ss_dssp CSGGGCCSSS-SE--EECCSSCSSEEEEEETTEEEEEECTTSCEEETTT---TEEECTTTTTCCSSCC
T ss_pred ccCCCCcCCC-CC--EeCCcccCcceeECCCCcEEEeECcCCCEEChhh---CcCcCcccCCCCCCCC
Confidence 3445678987 57 7999999999999999999999999999999999 9999999999987664
No 2
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Probab=99.23 E-value=8.5e-13 Score=96.99 Aligned_cols=49 Identities=29% Similarity=0.732 Sum_probs=0.0
Q ss_pred CCCCCCC-CCCeEccCccCCcccEEcCCCceeEeeCCCCCeEeccCCCccCCCCC
Q psy10482 17 PSGCPEP-YGVQTYPHPQLCDQFYKCTNGTLTLEQCENGLLYDGNGNVHNHCNYY 70 (84)
Q Consensus 17 ~~~C~~~-~g~~~~~~p~~C~~y~~C~~G~~~~~~Cp~Gl~Fd~~~~~~~~C~~~ 70 (84)
...|+.+ +| +++||.+|++||+|.+|..+++.||.||+||+++ +.||||
T Consensus 396 ~~~C~~~~~G--~~~~p~~C~~fy~C~~g~~~~~~Cp~Gl~f~~~~---~~Cd~p 445 (445)
T 1wb0_A 396 DTFCQGKADG--LYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSC---KCCTWN 445 (445)
T ss_dssp -------------------------------------------------------
T ss_pred CCcCCCCCCc--ccCCCCCCCcccCCCCCCEEeCCCcCCCEECccc---CCCCCC
Confidence 3469886 57 7999999999999999999999999999999999 999997
No 3
>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=60.01 E-value=2 Score=20.30 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=15.5
Q ss_pred eCCCCCeEeccCCCccCCCCCCCccc
Q psy10482 50 QCENGLLYDGNGNVHNHCNYYWGVDC 75 (84)
Q Consensus 50 ~Cp~Gl~Fd~~~~~~~~C~~~~~v~C 75 (84)
.|++|++.|. . +.|..++.=.|
T Consensus 8 ~C~~G~vrn~-~---G~CV~~~~Cp~ 29 (32)
T 3ssb_I 8 YCEDGYARDV-N---GKCIPIKDCPK 29 (32)
T ss_dssp EECTTEEECT-T---SCEEEGGGCCC
T ss_pred CcCCCcEECC-C---CCEECHHHCcC
Confidence 5899999886 4 67876654333
No 4
>3c75_L Methylamine dehydrogenase light chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=59.87 E-value=1.2 Score=29.41 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=31.6
Q ss_pred ccCccCCcccEEcC-CCc------eeEeeCCCCCeEeccCCCccCCCCCC
Q psy10482 29 YPHPQLCDQFYKCT-NGT------LTLEQCENGLLYDGNGNVHNHCNYYW 71 (84)
Q Consensus 29 ~~~p~~C~~y~~C~-~G~------~~~~~Cp~Gl~Fd~~~~~~~~C~~~~ 71 (84)
-.||..|+.|-+|. +|. ...-+||+|..-.+.+ |.++|.-|.
T Consensus 74 ~~D~~sCdYWRyCaiDG~LCsCCGGs~tsCPPGTe~Spis-WiGTC~NP~ 122 (188)
T 3c75_L 74 DNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATAS-XVASCYNPT 122 (188)
T ss_dssp SSCTTSTTBGGGTTCEEEBGGGGTSCSSSBCTTCEECSCC-EEEEEECTT
T ss_pred CCCccccchhhhcccCCceEcCcCCCCcCCCCCCCcCccc-ceeeecCCC
Confidence 35789999999986 553 4567899999888887 556676554
No 5
>2p3f_N Anti-coagulant protein 5; factor XA, hydrolase; 3.10A {Ancylostoma caninum}
Probab=53.95 E-value=5 Score=22.48 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=18.3
Q ss_pred eeCCCCCeEeccCCCccCCCCCCCccc
Q psy10482 49 EQCENGLLYDGNGNVHNHCNYYWGVDC 75 (84)
Q Consensus 49 ~~Cp~Gl~Fd~~~~~~~~C~~~~~v~C 75 (84)
=.|++|++.|... +.|+.++.=.+
T Consensus 49 C~C~~G~vr~~~~---g~CV~~~~Cp~ 72 (78)
T 2p3f_N 49 CVCKDGFYRDTVI---GDCVREEECDQ 72 (78)
T ss_dssp EEECSSCEEETTT---TEEECGGGCCC
T ss_pred cCcCCCEeEcCCC---CceECHHHCCC
Confidence 4799999999887 78987655444
No 6
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=51.49 E-value=10 Score=19.33 Aligned_cols=41 Identities=24% Similarity=0.536 Sum_probs=29.9
Q ss_pred CCcccEEcCCC--ceeEeeCCCCCeEeccCCCccCCCCCCCcccCCCC
Q psy10482 34 LCDQFYKCTNG--TLTLEQCENGLLYDGNGNVHNHCNYYWGVDCGNRK 79 (84)
Q Consensus 34 ~C~~y~~C~~G--~~~~~~Cp~Gl~Fd~~~~~~~~C~~~~~v~C~~r~ 79 (84)
.|+.+ |.+. ..+.=.|+.|+.-.... ..|.-.+.-.|+..+
T Consensus 8 gC~~~--C~n~~ggs~~C~C~~Gy~L~~Dg---~tC~d~dec~cg~~~ 50 (53)
T 2bz6_L 8 GCEQY--CSDHTGTKRSCRCHEGYSLLADG---VSCTPTVEYPCGKIP 50 (53)
T ss_dssp GCSSE--EEEETTTEEEEECCTTEEECTTS---SCEEECSSSCTTCCT
T ss_pred CcCCE--eEcCCCCCEEeeCCCCCEECCCC---CcccCCccccCCCcc
Confidence 46654 7653 25777899999988888 889777777786543
No 7
>3sjl_C Methylamine dehydrogenase light chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3l4o_C* 3l4m_C* 3pxs_C* 3pxt_C* 3pxw_C* 3rlm_C* 3orv_C* 3rn0_C* 3rn1_C* 3rmz_C* 3sle_C* 3svw_C* 3sws_C* 3sxt_C* 2gc4_B* 1mg3_B* 1mg2_B* 2gc7_B* 2j55_L* 2j56_L* ...
Probab=50.60 E-value=1.7 Score=27.12 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=30.3
Q ss_pred cCccCCcccEEcC-CCc------eeEeeCCCCCeEeccCCCccCCCCCC
Q psy10482 30 PHPQLCDQFYKCT-NGT------LTLEQCENGLLYDGNGNVHNHCNYYW 71 (84)
Q Consensus 30 ~~p~~C~~y~~C~-~G~------~~~~~Cp~Gl~Fd~~~~~~~~C~~~~ 71 (84)
.||..|+.|-+|. +|. ...-+||+|..-.+.+ |.++|.-|.
T Consensus 18 ~D~~sCdYWRyCaiDG~LCscCGGs~tsCPPGTe~Spvs-WVGTC~NP~ 65 (137)
T 3sjl_C 18 NDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATAS-XVASCYNPT 65 (137)
T ss_dssp SCTTSTTBGGGTTCEEEBGGGTTCBTTBBCTTCEECSCC-EEEEEEETT
T ss_pred CCccccchhheeccCCcEEcccCCCcccCCCCCccCccc-eeeeecCCC
Confidence 5688999998886 452 4567899999888876 445676554
No 8
>2oiz_D Aromatic amine dehydrogenase, small subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_D* 2agx_D* 2agl_D* 2agz_D* 2ah0_D* 2ah1_D* 2h3x_B* 2h47_B* 2hj4_D* 2hjb_D* 2hkm_D* 2hxc_D* 2iaa_B* 2iup_D* 2iuq_D* 2iur_D* 2iuv_D* 2agy_D* 2ok4_D* 2ok6_D* ...
Probab=49.96 E-value=1.6 Score=27.22 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=29.2
Q ss_pred cCccCCcccEEcC-CCc------eeEeeCCCCCeEeccCCCccCCCCCC
Q psy10482 30 PHPQLCDQFYKCT-NGT------LTLEQCENGLLYDGNGNVHNHCNYYW 71 (84)
Q Consensus 30 ~~p~~C~~y~~C~-~G~------~~~~~Cp~Gl~Fd~~~~~~~~C~~~~ 71 (84)
.||..|+.|.+|. +|. -..-+||+|..-.+.+ |.++|.-|.
T Consensus 23 ~D~~sCdYWRyCaiDG~LCscCGGs~tsCPPGTe~Spis-WvGTC~NP~ 70 (135)
T 2oiz_D 23 DEVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPIS-XIGTCHNPH 70 (135)
T ss_dssp -CTTSTTSGGGTTCEEEBGGGTTSBTTBCCTTCEEEEEE-EEEEEECTT
T ss_pred CCCccccceeeeccCCcEEcCcCCCcccCCCCCccCccc-eeeeecCCC
Confidence 5688999988886 442 4567899999888876 445675554
No 9
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=48.96 E-value=4.1 Score=23.80 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=8.9
Q ss_pred CCeEeccCCCccCCCCCCCcccCC
Q psy10482 54 GLLYDGNGNVHNHCNYYWGVDCGN 77 (84)
Q Consensus 54 Gl~Fd~~~~~~~~C~~~~~v~C~~ 77 (84)
.++||+++ +.|..-....|++
T Consensus 54 rw~yd~~~---~~C~~F~ygGC~G 74 (99)
T 1co7_I 54 RYFYNAKA---GLCQTFVYGGCRA 74 (99)
T ss_dssp EEEET-------TEEEEEECSSSC
T ss_pred EEEEECCC---CceeEEeeCCcCC
Confidence 46777777 6774333334543
No 10
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=41.90 E-value=16 Score=18.30 Aligned_cols=40 Identities=25% Similarity=0.554 Sum_probs=28.4
Q ss_pred CCcccEEcCCC-ceeEeeCCCCCeEeccCCCccCCCCCCCcccCCC
Q psy10482 34 LCDQFYKCTNG-TLTLEQCENGLLYDGNGNVHNHCNYYWGVDCGNR 78 (84)
Q Consensus 34 ~C~~y~~C~~G-~~~~~~Cp~Gl~Fd~~~~~~~~C~~~~~v~C~~r 78 (84)
.|+.. |.+. ..+.=.|+.|+.-+... ..|.-.+...|+..
T Consensus 7 ~C~~~--C~n~~gs~~C~C~~Gy~L~~d~---~tC~dide~pCg~~ 47 (51)
T 1kig_L 7 GCDQF--CREERSEVRCSCAHGYVLGDDS---KSCVSTERFPCGKF 47 (51)
T ss_dssp SSSSC--CCEETTEECCCCCTTEEECTTS---SCEEECSSSCTTCC
T ss_pred CcCCE--eEcCCCCeEEeCCCCcEECCCC---CccccCCcccCCCc
Confidence 46543 7653 25556799999988888 88977777778654
No 11
>1ccv_A AMCI, chymotrypsin inhibitor; protein inhibitor, hemolymph, canonical inhibitor, hydrolase inhibitor; NMR {Apis mellifera} SCOP: g.22.1.1
Probab=36.44 E-value=8.6 Score=19.83 Aligned_cols=18 Identities=33% Similarity=0.742 Sum_probs=13.4
Q ss_pred eeCCCCCeEeccCCCccCCCCC
Q psy10482 49 EQCENGLLYDGNGNVHNHCNYY 70 (84)
Q Consensus 49 ~~Cp~Gl~Fd~~~~~~~~C~~~ 70 (84)
=.||+|++.|.. +.|+.+
T Consensus 36 C~C~~G~v~~~~----g~CV~~ 53 (56)
T 1ccv_A 36 CQCQEGFLRNGE----GACVLP 53 (56)
T ss_dssp EEECTTCEEETT----TEEECG
T ss_pred CcCCCCeeECCC----CcccCh
Confidence 579999999874 457544
No 12
>2b5b_A Defensin; antibiotic; NMR {Caretta caretta}
Probab=36.28 E-value=8.7 Score=18.19 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=10.1
Q ss_pred ccCCcccEEcCC
Q psy10482 32 PQLCDQFYKCTN 43 (84)
Q Consensus 32 p~~C~~y~~C~~ 43 (84)
|.||.+|+-|..
T Consensus 21 pyncgkyiccvp 32 (36)
T 2b5b_A 21 PYNCGKYICCVP 32 (36)
T ss_dssp SSSBCCSSCSSS
T ss_pred CccCCceEEeEE
Confidence 789999988865
No 13
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=34.96 E-value=26 Score=18.17 Aligned_cols=38 Identities=29% Similarity=0.652 Sum_probs=27.1
Q ss_pred CCcccEEcCCC--ceeEeeCCCCCeEeccCCCccCCCCCCCcccC
Q psy10482 34 LCDQFYKCTNG--TLTLEQCENGLLYDGNGNVHNHCNYYWGVDCG 76 (84)
Q Consensus 34 ~C~~y~~C~~G--~~~~~~Cp~Gl~Fd~~~~~~~~C~~~~~v~C~ 76 (84)
.|+.+ |.+. ..+.=.|++|+.-.+.. ..|.-.....|+
T Consensus 8 gC~~~--C~n~~~gs~~C~C~~Gy~L~~D~---~tC~d~~~~pC~ 47 (59)
T 2wph_E 8 RCEQF--CKNSADNKVVCSCTEGYRLAENQ---KSCEPAVPFPCG 47 (59)
T ss_dssp GCSSE--EEECSTTCEEEECCTTEEECTTS---SCEEESSSSCTT
T ss_pred CcCCE--eEeCCCCCEEeeCCCCcEECCCC---CcccCCCCCCCC
Confidence 57654 8663 36777899999988888 788665555564
No 14
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=34.27 E-value=18 Score=17.05 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=10.6
Q ss_pred eeCCCCCeEeccC
Q psy10482 49 EQCENGLLYDGNG 61 (84)
Q Consensus 49 ~~Cp~Gl~Fd~~~ 61 (84)
..||.|-+||.-.
T Consensus 16 sncpkgkvwngfd 28 (36)
T 1iyc_A 16 SNCPKGKVWNGFD 28 (36)
T ss_dssp SCCCSSCEEETTE
T ss_pred cCCCCcceecCcc
Confidence 4699999999765
No 15
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=32.73 E-value=14 Score=23.60 Aligned_cols=44 Identities=18% Similarity=0.449 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCeEccCccCCcccEEcCCCceeE-----------eeCCCCCeEecc
Q psy10482 15 QAPSGCPEPYGVQTYPHPQLCDQFYKCTNGTLTL-----------EQCENGLLYDGN 60 (84)
Q Consensus 15 ~~~~~C~~~~g~~~~~~p~~C~~y~~C~~G~~~~-----------~~Cp~Gl~Fd~~ 60 (84)
..+..|.-+.| +|-+...|...-.|..|..+. ..||.|++-|..
T Consensus 79 tsdtvC~C~~G--~~~~~~~C~~ct~C~~G~~v~~~~t~~~dt~C~~C~~Gtfs~~~ 133 (171)
T 3urf_Z 79 THNRVCECKEG--RYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNET 133 (171)
T ss_dssp SSCCEEEECTT--EEEETTEEEECCCBCTTEEEEECCCSSSCCEEEECCTTEECSSC
T ss_pred CCCccccCCCC--cEECCccCcccCcCCCCceEeecCccCCCcccccCCCCcccCCC
Confidence 34555655567 555567787777788886443 348999665553
No 16
>1xak_A SARS ORF7A accessory protein; I-SET IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Sars coronavirus} SCOP: b.1.24.1 PDB: 1yo4_A
Probab=32.34 E-value=23 Score=19.72 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=15.1
Q ss_pred cEEcCCCcee--EeeCCCCCeEe
Q psy10482 38 FYKCTNGTLT--LEQCENGLLYD 58 (84)
Q Consensus 38 y~~C~~G~~~--~~~Cp~Gl~Fd 58 (84)
|..|..|..+ ...||+|.+=-
T Consensus 7 yqec~rgttvllkepc~~~tyeg 29 (83)
T 1xak_A 7 YQECVRGTTVILKEPCPSGTYEG 29 (83)
T ss_dssp EEEEETTSEEEEECSSTTCEEEE
T ss_pred hHhhhCCceEEecCCCCCCcccC
Confidence 5679998744 47799997643
No 17
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=29.12 E-value=37 Score=22.46 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=30.2
Q ss_pred ccCCcccEEcCCCc-eeEeeCCCCCeEeccCCCccCCCCCCCcccCCCC
Q psy10482 32 PQLCDQFYKCTNGT-LTLEQCENGLLYDGNGNVHNHCNYYWGVDCGNRK 79 (84)
Q Consensus 32 p~~C~~y~~C~~G~-~~~~~Cp~Gl~Fd~~~~~~~~C~~~~~v~C~~r~ 79 (84)
...|+.| |.+.. .+.=.|+.|+.-.... ..|...+.-.|+.+.
T Consensus 10 ~~~C~~~--C~~~~~~~~C~C~~G~~l~~d~---~sC~p~~~c~CG~~~ 53 (283)
T 3f1s_B 10 TDGCQHF--CLPGQESYTCSCAQGYRLGEDH---KQCVPHDQCACGVLT 53 (283)
T ss_dssp SSSCSSB--CCCCTTSCCCBCCTTEEECTTS---SCEEECSTTCTTCCC
T ss_pred CCCCCCE--eeCCCCCeEecCCCCcccCCCC---CccccccccccCccc
Confidence 3468776 87643 3455688998888877 789777777787543
No 18
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=28.83 E-value=32 Score=20.64 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=28.8
Q ss_pred EcCCCc--eeEeeCCCCCeEeccCCCccCCCCCCCcccCCCCcC
Q psy10482 40 KCTNGT--LTLEQCENGLLYDGNGNVHNHCNYYWGVDCGNRKAD 81 (84)
Q Consensus 40 ~C~~G~--~~~~~Cp~Gl~Fd~~~~~~~~C~~~~~v~C~~r~~~ 81 (84)
.|.+.. .+.=.|+.|+.-+..- ..|.......|+..+.+
T Consensus 101 ~C~~~~g~~y~C~C~~Gy~l~~dG---~~C~~~~e~pCg~~p~~ 141 (142)
T 2c4f_L 101 YCSDHTGTKRSCRCHEGYSLLADG---VSCTPTVEYPCGKIPIL 141 (142)
T ss_dssp EEECCTTSCCEEECCTTEEECTTS---SCEEESSSSCTTCCTTT
T ss_pred EeECCCCCCEEEECCCCceECCCC---CCCCCCCccCCCCCCCC
Confidence 576432 5677899998887777 78988777789776654
No 19
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=28.47 E-value=21 Score=18.35 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=12.8
Q ss_pred eeCCCCCeEeccCCCccCC
Q psy10482 49 EQCENGLLYDGNGNVHNHC 67 (84)
Q Consensus 49 ~~Cp~Gl~Fd~~~~~~~~C 67 (84)
..||...|||.-. ..|
T Consensus 2 ~~C~~eqYwD~LL---~~C 17 (47)
T 1xu2_R 2 GQCSQNEYFDSLL---HAC 17 (47)
T ss_dssp --CCTTEEEETTT---TEE
T ss_pred CCCcHHHHHHHHH---hcc
Confidence 4799999999998 777
No 20
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=27.92 E-value=21 Score=25.25 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCeEccCccCCcccEEcCCCceeE-----------eeCCCCCeEecc
Q psy10482 16 APSGCPEPYGVQTYPHPQLCDQFYKCTNGTLTL-----------EQCENGLLYDGN 60 (84)
Q Consensus 16 ~~~~C~~~~g~~~~~~p~~C~~y~~C~~G~~~~-----------~~Cp~Gl~Fd~~ 60 (84)
.+..|..+.| +|-+...|...-.|..|..+. ..|+.|++-|..
T Consensus 86 sDtvC~C~~G--~y~~~~~C~~Ct~CppG~gV~~~cT~tsDTvC~~Cp~GTFSd~~ 139 (313)
T 3u3p_A 86 TDRECTCPPG--MFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP 139 (313)
T ss_dssp BCCEEECCTT--EEEETTEEEECCCBCTTEEEEECCCSSSCCEEEECCTTEECCSC
T ss_pred CCccccCCCC--ceeccccccccccCCCCCeeeecCCCCCCCccccCCCCeecCCC
Confidence 4556766668 444445788877888886443 348999777653
No 21
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=26.93 E-value=31 Score=18.54 Aligned_cols=40 Identities=28% Similarity=0.621 Sum_probs=29.2
Q ss_pred CCcccEEcCC--CceeEeeCCCCCeEeccCCCccCCCCCCCcccCCC
Q psy10482 34 LCDQFYKCTN--GTLTLEQCENGLLYDGNGNVHNHCNYYWGVDCGNR 78 (84)
Q Consensus 34 ~C~~y~~C~~--G~~~~~~Cp~Gl~Fd~~~~~~~~C~~~~~v~C~~r 78 (84)
.|+.+ |.+ |..+.=.|+.|+.-.... ..|.-.+.-.|+..
T Consensus 14 gC~h~--C~n~~g~s~~C~C~~Gy~L~~D~---~tC~d~dec~Cg~~ 55 (69)
T 1kli_L 14 GCEQY--CSDHTGTKRSCRCHEGYSLLADG---VSCTPTVEYPCGKI 55 (69)
T ss_dssp GCSSE--EEEETTTEEEEECCTTEEECTTS---SCEEECSSSCTTCC
T ss_pred CcCCE--eEcCCCCCEEEeCCCCCeECCCC---CcccCcccccCCCc
Confidence 47654 865 335778899999998888 88977666667643
No 22
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=26.68 E-value=67 Score=16.01 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=28.7
Q ss_pred cCCcccEEcCCC-ceeEeeCCCCCeEeccCCCccCCCCCCCcccCCC
Q psy10482 33 QLCDQFYKCTNG-TLTLEQCENGLLYDGNGNVHNHCNYYWGVDCGNR 78 (84)
Q Consensus 33 ~~C~~y~~C~~G-~~~~~~Cp~Gl~Fd~~~~~~~~C~~~~~v~C~~r 78 (84)
..|+. .|.+- ..+.=.|+.|+.-+... ..|...+.-.|+..
T Consensus 9 ~~C~~--~C~nt~Gsy~C~C~~Gy~L~~d~---~~C~didec~cg~~ 50 (55)
T 2jkh_L 9 GDCDQ--FCHEEQNSVVCSCARGYTLADNG---KACIPTGPYPCGKQ 50 (55)
T ss_dssp GGCSS--EEEEETTEEEEECCTTEEECTTS---SCEEESSSSCTTCC
T ss_pred CCcCc--EeEcCCCCeEEeCCCCCEECCCC---CeeccCccccCCCc
Confidence 35764 58763 36677899999888887 78976666556543
No 23
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=25.83 E-value=19 Score=23.02 Aligned_cols=43 Identities=19% Similarity=0.480 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCeEccCccCCcccEEcCCCceeE-----------eeCCCCCeEecc
Q psy10482 16 APSGCPEPYGVQTYPHPQLCDQFYKCTNGTLTL-----------EQCENGLLYDGN 60 (84)
Q Consensus 16 ~~~~C~~~~g~~~~~~p~~C~~y~~C~~G~~~~-----------~~Cp~Gl~Fd~~ 60 (84)
.+..|.-+.| +|-....|...-.|..|..+. ..||.|++-+..
T Consensus 82 sdtvC~C~~G--~~~~~~~C~~~s~C~pG~~v~~~~t~~~Dt~C~~C~~GtFs~~~ 135 (176)
T 3k51_B 82 HNRACRCRTG--FFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASS 135 (176)
T ss_dssp BCCEEEECTT--EEEETTEEEECCCCCTTEEEEECCCSSSCCEEEECCTTEECCSC
T ss_pred CCceeeccCC--eeECCCcccccccCCCCcEEeecCcccCCCccccCCCCcccCCC
Confidence 4555655567 455567788777888886443 458999666554
No 24
>2xrb_A Complement regulatory protein CRRY; immune system, immunology; 2.50A {Rattus norvegicus} PDB: 2xrd_A
Probab=25.74 E-value=1.4e+02 Score=19.84 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=14.7
Q ss_pred cEEcCCCc---eeEeeCCCCCeEeccC
Q psy10482 38 FYKCTNGT---LTLEQCENGLLYDGNG 61 (84)
Q Consensus 38 y~~C~~G~---~~~~~Cp~Gl~Fd~~~ 61 (84)
.|.|..|. ....+|..+-.|+...
T Consensus 65 ~y~C~~Gy~~~~~~~~C~~~g~Ws~~~ 91 (290)
T 2xrb_A 65 KYECRPGYIKRQFSITCEVNSVWTSPQ 91 (290)
T ss_dssp EEEECTTBCCCEEEEEECTTSCEECCT
T ss_pred EEEccCCcCCCCCeEEECCCCeECCCC
Confidence 46677654 3456786655677655
No 25
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=25.36 E-value=33 Score=18.61 Aligned_cols=15 Identities=27% Similarity=0.764 Sum_probs=11.6
Q ss_pred eCCCCCeEeccCCCccCC
Q psy10482 50 QCENGLLYDGNGNVHNHC 67 (84)
Q Consensus 50 ~Cp~Gl~Fd~~~~~~~~C 67 (84)
.||.|--|++.. ..|
T Consensus 4 pCprGssws~dL---dkC 18 (66)
T 2kn0_A 4 ECPEGRAYSQDL---GKC 18 (66)
T ss_dssp CCCSSEEEETTT---TEE
T ss_pred cCCCCcccchhH---Hhh
Confidence 588888888887 655
No 26
>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}
Probab=23.14 E-value=58 Score=22.53 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=24.0
Q ss_pred CCCCCCCCCCC--eEccC--ccCCcccEEcCCCceeEeeCCCCCeEecc
Q psy10482 16 APSGCPEPYGV--QTYPH--PQLCDQFYKCTNGTLTLEQCENGLLYDGN 60 (84)
Q Consensus 16 ~~~~C~~~~g~--~~~~~--p~~C~~y~~C~~G~~~~~~Cp~Gl~Fd~~ 60 (84)
++..|+..... .++.+ ...|..||+...+.....+|...=.|...
T Consensus 29 ~~~~c~~p~~~~~g~~~~~i~y~C~~~y~~~~~~~~~~~c~~~g~w~~~ 77 (347)
T 4f4o_C 29 TDDSCPKPPEIPKGYVEHMVRYHCQTYYKLRTAGDGVYTLDSNKQWTNK 77 (347)
T ss_dssp ----CCCCCCBTTEEEEEEEEEEECTTEEEECSSCSEEEECTTSCEEBT
T ss_pred CCCcCCCCCCCCCceeceeeEEcCCCccEeccCCCCCEEECCCCCEeCC
Confidence 45567665310 12222 35788888876555556788766667644
No 27
>1bx7_A Hirustasin; anti-coagulant, peptidic inhibitors, conformational flexibility, serine protease inhibitor; 1.20A {Hirudo medicinalis} SCOP: g.3.15.1 PDB: 1bx8_A 1hia_I
Probab=23.05 E-value=85 Score=16.49 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=11.9
Q ss_pred EeeCCCCCeEeccCCCccCCCCC
Q psy10482 48 LEQCENGLLYDGNGNVHNHCNYY 70 (84)
Q Consensus 48 ~~~Cp~Gl~Fd~~~~~~~~C~~~ 70 (84)
.+.||.||-=|+. .|+++
T Consensus 30 ri~Cp~GFk~DeN-----GCe~~ 47 (55)
T 1bx7_A 30 RIRCKYGLKKDEN-----GCEYP 47 (55)
T ss_dssp CCCCTTCBCCCTT-----SCCCS
T ss_pred EEeCCCcceECCC-----CCcce
Confidence 4579999765554 47664
No 28
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=20.27 E-value=83 Score=18.53 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=26.2
Q ss_pred EcCCC-ceeEeeCCCCCeEeccCCCccCCCCCCCcccCCC
Q psy10482 40 KCTNG-TLTLEQCENGLLYDGNGNVHNHCNYYWGVDCGNR 78 (84)
Q Consensus 40 ~C~~G-~~~~~~Cp~Gl~Fd~~~~~~~~C~~~~~v~C~~r 78 (84)
.|.+. ..+.=.|++|+..+... ..|.......|+..
T Consensus 94 ~C~~~~g~y~C~C~~Gy~l~~~g---~~C~~~~~~pC~~~ 130 (134)
T 2vh0_B 94 FCHEEQNSVVCSCARGYTLADNG---KACIPTGPYPCGKQ 130 (134)
T ss_dssp EEEEETTEEEEECCTTEEECTTS---SCEEESSSSCTTCC
T ss_pred EeECCCCCEEEECCCCcEECCCC---CccCcCCCcCCCCC
Confidence 57643 36677899999888777 78977666778643
Done!