RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10482
(84 letters)
>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2.
Length = 49
Score = 37.8 bits (88), Expect = 2e-05
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 20 CPEPYGVQTYPHPQLCDQFYKCTNGTLTLEQCENGLLYD 58
CP YPHP C ++Y+C+NG + C GL+++
Sbjct: 3 CPGRGDGL-YPHPTDCSKYYQCSNGRPIVGSCPAGLVFN 40
>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain. This
domain is called the Peritrophin-A domain and is found
in chitin binding proteins particularly peritrophic
matrix proteins of insects and animal chitinases.
Copies of the domain are also found in some
baculoviruses. Relevant references that describe
proteins with this domain include. It is an
extracellular domain that contains six conserved
cysteines that probably form three disulphide bridges.
Chitin binding has been demonstrated for a protein
containing only two of these domains.
Length = 53
Score = 37.4 bits (87), Expect = 3e-05
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 28 TYPHPQLCDQFYKCTNGTLTLEQCENGLLYDGNGNVHNHCNYYWGVD 74
YP P C ++Y+C+NG + C GL++D C+Y V
Sbjct: 8 LYPDPGDCSKYYQCSNGKAVVFTCPAGLVFD---PALGTCDYPDNVV 51
>gnl|CDD|163448 TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein. A novel
genetic system characterized by six major proteins,
included a ParB homolog and a ThiF homolog, is
designated PRTRC, or ParB-Related,ThiF-Related Cassette.
This family is the PRTRC system ThiF family protein.
Length = 244
Score = 27.7 bits (62), Expect = 0.66
Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 9/64 (14%)
Query: 20 CPEPYGVQTYPHPQLCDQFYKCTNGTLTLEQCENGLLYDGNGNVHNHCNYYWGVDCGNRK 79
PE + H D C + +G YW +D GNR
Sbjct: 94 HPERVERSSTLHRP--DIVIGCVDNRAARLAILRAFEGGYSGYA------YW-LDLGNRA 144
Query: 80 ADWQ 83
D Q
Sbjct: 145 DDGQ 148
>gnl|CDD|238975 cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate (TPP) family, E1
of E. coli PDC-like subfamily, TPP-binding module;
composed of proteins similar to the E1 component of the
Escherichia coli pyruvate dehydrogenase multienzyme
complex (PDC). PDC catalyzes the oxidative
decarboxylation of pyruvate and the subsequent
acetylation of coenzyme A to acetyl-CoA. The E1
component of PDC catalyzes the first step of the
multistep process, using TPP and a divalent cation as
cofactors. E. coli PDC is a homodimeric enzyme.
Length = 386
Score = 27.7 bits (62), Expect = 0.70
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 23 PYGVQTYPHPQLCDQF 38
G+ +YPHP L F
Sbjct: 97 GGGLSSYPHPWLMPDF 112
>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family
domain in Subtilisin-like proteins. This family is a
member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values.
Length = 259
Score = 27.2 bits (61), Expect = 0.78
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 25 GVQTYPHPQLCDQFYKCTNGTLTLEQCENGLLYDGNGNV 63
GV Y HP L D + E NG+ DGNG V
Sbjct: 12 GVD-YNHPDLKDNMWVNPG-----EIPGNGIDDDGNGYV 44
>gnl|CDD|182093 PRK09819, PRK09819, alpha-mannosidase; Provisional.
Length = 875
Score = 25.7 bits (57), Expect = 3.1
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 27 QTYPHPQLCDQFYKCT---NGTLTLEQCENGLLYD 58
++ + ++FY+ T NGTLT+ ++G YD
Sbjct: 483 KSSAEGIIENEFYQITLNENGTLTIVDKKSGKTYD 517
>gnl|CDD|193511 cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE
encoded N-succinyl-L,L-diaminopimelic acid
desuccinylase. Peptidase M20 family, proteobacterial
DapE encoded N-succinyl-L,L-diaminopimelic acid
desuccinylase (DapE; aspartyl dipeptidase;
succinyl-diaminopimelate desuccinylase) subfamily. DapE
catalyzes the hydrolysis of
N-succinyl-L,L-diaminopimelate (L,L-SDAP) to
L,L-diaminopimelate and succinate. It has been shown
that DapE is essential for cell growth and
proliferation. DapEs have been purified from
Escherichia coli and Haemophilus influenzae, while the
genes that encode for DapEs have been sequenced from
several bacterial sources such as Corynebacterium
glutamicum, Helicobacter pylori, Neisseria meningitidis
and Mycobacterium tuberculosis. DapE is a small,
dimeric enzyme that requires two zinc atoms per
molecule for full enzymatic activity. All of the amino
acids that function as metal binding ligands are
strictly conserved in DapE.
Length = 366
Score = 24.7 bits (55), Expect = 7.2
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 9 LAQPLLQAPSGCPEPYGVQTYPHPQLCDQFYKCTNGTLTLEQCENGLLYDGNGNVH 64
LAQ L++ PS P+ G Q +L + C L +N G G H
Sbjct: 3 LAQELIRRPSVTPDDAGCQDLLAERLKALGFTCER--LDFGGVKNLWARRGFGGPH 56
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28. Glycosyl
hydrolase family 28 includes polygalacturonase
EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A),
EC:3.2.1.-. These enzymes is important in cell wall
metabolism.
Length = 325
Score = 24.6 bits (54), Expect = 7.7
Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 11/62 (17%)
Query: 24 YGVQTYPHPQLCDQFYKCTNGT---LTLEQCENGLLYDG-------NGNVHNHCNYYWGV 73
G+ P C N T +T++ DG + N G
Sbjct: 105 TGLNIKNSPVFHFSVEDCKNLTASDITIDAPAGSPNTDGIDIGSSSGVTISN-TTIGTGD 163
Query: 74 DC 75
DC
Sbjct: 164 DC 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.140 0.490
Gapped
Lambda K H
0.267 0.0665 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,106,509
Number of extensions: 293607
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 10
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)