RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10482
         (84 letters)



>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR
          {Tachypleus tridentatus} SCOP: g.31.1.1
          Length = 74

 Score = 45.6 bits (108), Expect = 2e-08
 Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 20 CPEPYGVQTYPHPQLCDQFYKCTNGTLTLEQCENGLLYDGNGNVHNHCNYYWGVDCGNRK 79
                     +   C  FY C      LE C  GL Y+    V   C++     C +  
Sbjct: 9  YSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKV---CDWPSKAGCTSVN 65

Query: 80 AD 81
           +
Sbjct: 66 KE 67


>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
           chitinase inhibitors, carbohyd metabolism, chitin
           degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
           sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
           1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
          Length = 445

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 29  YPHPQLCDQFYKCTNGTLTLEQCENGLLYDGNGNVHNHCNY 69
           YP+P+    FY C  G L  + C  GL++  +      C +
Sbjct: 407 YPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKC---CTW 444


>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
           methyltransferase-fold, RNA-binding domain; 1.65A
           {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
          Length = 429

 Score = 28.3 bits (64), Expect = 0.25
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 17  PSGCPEPYGVQTYPHPQLCDQFY 39
            +G PE  G Q  P  +  D F+
Sbjct: 400 ETGTPEQPGKQNLPGAEEGDGFF 422


>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
           hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
           d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
           2yb9_A*
          Length = 696

 Score = 23.9 bits (52), Expect = 9.7
 Identities = 3/13 (23%), Positives = 9/13 (69%)

Query: 53  NGLLYDGNGNVHN 65
           NG  ++ +G++ +
Sbjct: 539 NGRNFNKDGDLVD 551


>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
           pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
           2.60A {Mycobacterium tuberculosis}
          Length = 699

 Score = 23.9 bits (52), Expect = 10.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 53  NGLLYDGNGNVHN 65
            G  YDG+GN+ +
Sbjct: 538 QGAKYDGDGNLVD 550


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.140    0.490 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,361,976
Number of extensions: 65976
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 15
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)