BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10483
         (287 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QUV|A Chain A, Crystal Structure Of A Trna-Guanine-N1-Methyltransferase
           From Mycobacterium Abscessus
 pdb|3QUV|B Chain B, Crystal Structure Of A Trna-Guanine-N1-Methyltransferase
           From Mycobacterium Abscessus
          Length = 246

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 169 CPPGLIYDDSVSSCAWPSENTRKDCTVTKKDTLTDGFSCPDGE 211
            PP L+  D     AW +E +R+     + D L  GF  P GE
Sbjct: 199 VPPVLLSGDHAKIAAWRAEQSRQRTIERRPDLL--GFDSPTGE 239


>pdb|1DQC|A Chain A, Solution Structure Of Tachycitin, An Antimicrobial Protein
           With Chitin-Binding Function
          Length = 74

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 153 CDKFVNCVDGVPNELPCPPGLIYDDSVSSCAWPSE----NTRKDCTVTK 197
           C  F NC   +     CP GL Y+  +  C WPS+    +  K+C + K
Sbjct: 24  CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCTSVNKECHLWK 72


>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
           Cyclopentapeptide Inhibitor Argadin Against Human
           Chitinase
 pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
           Cyclopentapeptide Inhibitor Argifin Against Human
           Chitinase
          Length = 445

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 140 RANGFFRHYDEKVCDKFVNCVDGVPNELPCPPGLIYDDSVSSCAW 184
           +A+G + +  E+    F +C  G   +  CP GL++ +S   C W
Sbjct: 402 KADGLYPNPRER--SSFYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.136    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,167,911
Number of Sequences: 62578
Number of extensions: 466716
Number of successful extensions: 778
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 12
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)