Query psy10483
Match_columns 287
No_of_seqs 257 out of 1622
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 19:19:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01607 CBM_14: Chitin bindin 99.2 2.8E-11 6E-16 80.7 3.8 49 71-123 4-53 (53)
2 smart00494 ChtBD2 Chitin-bindi 99.0 4.1E-10 8.9E-15 75.6 4.9 54 65-124 2-55 (56)
3 PF01607 CBM_14: Chitin bindin 99.0 2.8E-10 6.1E-15 75.8 3.4 45 141-187 5-49 (53)
4 smart00494 ChtBD2 Chitin-bindi 98.9 1.9E-09 4E-14 72.4 4.3 47 223-271 9-55 (56)
5 PF03427 CBM_19: Carbohydrate 73.4 3.7 8.1E-05 27.9 2.6 21 154-174 35-55 (61)
6 PF03427 CBM_19: Carbohydrate 71.9 2.8 6E-05 28.5 1.7 21 232-253 35-55 (61)
7 PF08475 Baculo_VP91_N: Viral 48.2 28 0.00061 29.2 4.0 38 74-117 105-142 (183)
8 PF08475 Baculo_VP91_N: Viral 42.1 33 0.00072 28.8 3.5 44 225-274 107-150 (183)
9 PF12662 cEGF: Complement Clr- 33.4 32 0.0007 18.7 1.4 17 247-263 5-21 (24)
10 cd00064 FU Furin-like repeats. 28.8 47 0.001 20.9 1.9 20 242-261 29-48 (49)
11 PF01826 TIL: Trypsin Inhibito 28.0 42 0.00092 21.7 1.6 18 25-43 36-53 (55)
No 1
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.16 E-value=2.8e-11 Score=80.70 Aligned_cols=49 Identities=43% Similarity=0.981 Sum_probs=37.5
Q ss_pred CCCccccCCCCCCceEEecCCccCceeeCCCCCeecCCCCCcCccccCcc-ccC
Q psy10483 71 LKNSYYPDSIQCDLYYHCSDGQLVEEKLCPDGLLFDDSNPAHERCDTNVN-VEC 123 (287)
Q Consensus 71 ~~~G~~~~p~~C~~y~~C~~g~~~~~~~Cp~g~~Fd~~~~~~~~C~~~~~-~~C 123 (287)
..+|+++++.+|++||+|.+|.+ .+++||.|++||.. +++|+++.. +.|
T Consensus 4 ~~~~~~~~~~~C~~Y~~C~~g~~-~~~~C~~g~~fd~~---~~~C~~~~~~~~C 53 (53)
T PF01607_consen 4 RGDGFYPHPDDCRKYYQCVNGQA-VEQRCPEGLYFDPS---SQRCVPPSNVVQC 53 (53)
T ss_dssp -SSEEE--SS-SSEEEEEETTEE-EEEE-TTS-EE-TT---TSSEE-TTT-TT-
T ss_pred cCCeeEeCCCCCCEEEEeeCCcE-ECCCCcCCCEECcC---cCEEcCCccCCCC
Confidence 56889999999999999999999 99999999999999 999999887 555
No 2
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=99.02 E-value=4.1e-10 Score=75.62 Aligned_cols=54 Identities=41% Similarity=0.933 Sum_probs=48.9
Q ss_pred CCCCCCCCCccccCCCCCCceEEecCCccCceeeCCCCCeecCCCCCcCccccCccccCC
Q psy10483 65 KCPVDKLKNSYYPDSIQCDLYYHCSDGQLVEEKLCPDGLLFDDSNPAHERCDTNVNVECG 124 (287)
Q Consensus 65 ~C~~~~~~~G~~~~p~~C~~y~~C~~g~~~~~~~Cp~g~~Fd~~~~~~~~C~~~~~~~C~ 124 (287)
.|.. ...|+++++.+|++||+|.+|.+ ..+.||.|++||.. ++.|+++..+.|.
T Consensus 2 ~C~~--~~~g~~~~~~~C~~y~~C~~~~~-~~~~C~~g~~f~~~---~~~C~~~~~~~C~ 55 (56)
T smart00494 2 ECPG--RGDGLYPHPTDCSKYYQCSNGRP-IVGSCPAGLVFDPA---TQTCDWPDNVGCG 55 (56)
T ss_pred cCCC--CCCccccCcccCCeeEEcCCCcE-EeccCcCCCeECCC---CCCcCCcccCCCC
Confidence 4666 56889999999999999999988 99999999999999 9999999887775
No 3
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.00 E-value=2.8e-10 Score=75.77 Aligned_cols=45 Identities=42% Similarity=0.943 Sum_probs=35.6
Q ss_pred CCCeeecCCCccCcccEEcCCCceeEecCCCCCeeeCCCCCcCCCCC
Q psy10483 141 ANGFFRHYDEKVCDKFVNCVDGVPNELPCPPGLIYDDSVSSCAWPSE 187 (287)
Q Consensus 141 ~~G~~~~p~~~~C~~y~~C~~g~~~~~~Cp~G~~Fd~~~~~C~~~~~ 187 (287)
.+|+++++.+ |++||+|.+|.++++.||.|++||+.+++|+++..
T Consensus 5 ~~~~~~~~~~--C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~ 49 (53)
T PF01607_consen 5 GDGFYPHPDD--CRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSN 49 (53)
T ss_dssp SSEEE--SS---SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT
T ss_pred CCeeEeCCCC--CCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCcc
Confidence 4689999766 99999999999999999999999999999999887
No 4
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=98.89 E-value=1.9e-09 Score=72.38 Aligned_cols=47 Identities=51% Similarity=1.169 Sum_probs=43.6
Q ss_pred CCCCCCccCccceeeccccceeeccCCCCCCcccCCCcCCCCCCCCCCC
Q psy10483 223 PTFPHPEDCQKFYICRNGVQAQYGSCPAGSVYNEESFKCDEPENVPGCE 271 (287)
Q Consensus 223 ~~~~~~~~C~~Yy~C~~g~~~~~~~Cp~G~~Fd~~~~~C~~~~~v~~C~ 271 (287)
++++|+.+|++||+|..| .+..+.||.|++||..++.|+++..+ .|.
T Consensus 9 g~~~~~~~C~~y~~C~~~-~~~~~~C~~g~~f~~~~~~C~~~~~~-~C~ 55 (56)
T smart00494 9 GLYPHPTDCSKYYQCSNG-RPIVGSCPAGLVFDPATQTCDWPDNV-GCG 55 (56)
T ss_pred ccccCcccCCeeEEcCCC-cEEeccCcCCCeECCCCCCcCCcccC-CCC
Confidence 469999999999999999 99999999999999999999999875 674
No 5
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=73.35 E-value=3.7 Score=27.91 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.1
Q ss_pred cccEEcCCCceeEecCCCCCe
Q psy10483 154 DKFVNCVDGVPNELPCPPGLI 174 (287)
Q Consensus 154 ~~y~~C~~g~~~~~~Cp~G~~ 174 (287)
.+|-+|.+|..+...||.|++
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCE
Confidence 469999999999999999986
No 6
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=71.85 E-value=2.8 Score=28.52 Aligned_cols=21 Identities=38% Similarity=0.793 Sum_probs=19.1
Q ss_pred ccceeeccccceeeccCCCCCC
Q psy10483 232 QKFYICRNGVQAQYGSCPAGSV 253 (287)
Q Consensus 232 ~~Yy~C~~g~~~~~~~Cp~G~~ 253 (287)
.+|-+|.+| .+....||.|++
T Consensus 35 G~faiC~~G-~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 35 GSFAICDHG-TWVITPCPAGTT 55 (61)
T ss_pred CCEEEcCCC-cEEEeeCCCCCE
Confidence 479999999 999999999985
No 7
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=48.16 E-value=28 Score=29.18 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=31.2
Q ss_pred ccccCCCCCCceEEecCCccCceeeCCCCCeecCCCCCcCcccc
Q psy10483 74 SYYPDSIQCDLYYHCSDGQLVEEKLCPDGLLFDDSNPAHERCDT 117 (287)
Q Consensus 74 G~~~~p~~C~~y~~C~~g~~~~~~~Cp~g~~Fd~~~~~~~~C~~ 117 (287)
..-+|+.+=++|..=.+... ..+.||.+..||.. +|++
T Consensus 105 rV~~~~~d~~kF~~~~DDGw-v~~~CP~~~~FD~~-----~Cvp 142 (183)
T PF08475_consen 105 RVRPHPNDPTKFIARGDDGW-VDMDCPENERFDGN-----KCVP 142 (183)
T ss_pred ceecCCCCCceEEEEecCCc-EEEeCCCccccccc-----ceee
Confidence 36678888899988776566 99999999999974 7885
No 8
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=42.11 E-value=33 Score=28.76 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=35.5
Q ss_pred CCCCccCccceeeccccceeeccCCCCCCcccCCCcCCCCCCCCCCCCCC
Q psy10483 225 FPHPEDCQKFYICRNGVQAQYGSCPAGSVYNEESFKCDEPENVPGCENWF 274 (287)
Q Consensus 225 ~~~~~~C~~Yy~C~~g~~~~~~~Cp~G~~Fd~~~~~C~~~~~v~~C~~~~ 274 (287)
-+|+.+=++|..=.+- -+..+.||.+..||.. +|+.. +-|....
T Consensus 107 ~~~~~d~~kF~~~~DD-Gwv~~~CP~~~~FD~~--~Cvp~---p~C~~~~ 150 (183)
T PF08475_consen 107 RPHPNDPTKFIARGDD-GWVDMDCPENERFDGN--KCVPI---PPCDNKP 150 (183)
T ss_pred ecCCCCCceEEEEecC-CcEEEeCCCccccccc--ceeec---CccCCCC
Confidence 5677888899888776 6999999999999999 99875 3685443
No 9
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=33.37 E-value=32 Score=18.73 Aligned_cols=17 Identities=29% Similarity=0.825 Sum_probs=14.1
Q ss_pred cCCCCCCcccCCCcCCC
Q psy10483 247 SCPAGSVYNEESFKCDE 263 (287)
Q Consensus 247 ~Cp~G~~Fd~~~~~C~~ 263 (287)
+|++|+..++....|..
T Consensus 5 ~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCED 21 (24)
T ss_pred eCCCCCcCCCCCCcccc
Confidence 68999999888888864
No 10
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=28.78 E-value=47 Score=20.91 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=14.2
Q ss_pred ceeeccCCCCCCcccCCCcC
Q psy10483 242 QAQYGSCPAGSVYNEESFKC 261 (287)
Q Consensus 242 ~~~~~~Cp~G~~Fd~~~~~C 261 (287)
..-+..||.+++++.....|
T Consensus 29 ~~Cv~~C~~~~~~~~~~~~C 48 (49)
T cd00064 29 GTCVSECPEGTYADTEGGVC 48 (49)
T ss_pred CcccccCCCCceecCcCCcC
Confidence 34445899999998666655
No 11
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=28.03 E-value=42 Score=21.73 Aligned_cols=18 Identities=17% Similarity=0.061 Sum_probs=14.6
Q ss_pred ecCCceEeeCCCCcccccc
Q psy10483 25 EQGNYLVLSDSRRLCIRYN 43 (287)
Q Consensus 25 ~c~~gl~fd~~~~~C~~~~ 43 (287)
.|+.|++++.. +.|++++
T Consensus 36 ~C~~G~v~~~~-~~CV~~~ 53 (55)
T PF01826_consen 36 FCPPGYVRNDN-GRCVPPS 53 (55)
T ss_dssp EETTTEEEETT-SEEEEGG
T ss_pred CCCCCeeEcCC-CCEEcHH
Confidence 38899999987 8898753
Done!