RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10483
         (287 letters)



>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain.  This
           domain is called the Peritrophin-A domain and is found
           in chitin binding proteins particularly peritrophic
           matrix proteins of insects and animal chitinases. Copies
           of the domain are also found in some baculoviruses.
           Relevant references that describe proteins with this
           domain include. It is an extracellular domain that
           contains six conserved cysteines that probably form
           three disulphide bridges. Chitin binding has been
           demonstrated for a protein containing only two of these
           domains.
          Length = 53

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 224 TFPHPEDCQKFYICRNGVQAQYGSCPAGSVYNEESFKCDEPENVPGC 270
            +P P DC K+Y C NG +A   +CPAG V++     CD P+NV  C
Sbjct: 8   LYPDPGDCSKYYQCSNG-KAVVFTCPAGLVFDPALGTCDYPDNVVDC 53



 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 140 RANGFFRHYDEKVCDKFVNCVDGVPNELPCPPGLIYDDSVSSCAWPSE 187
           R +G +       C K+  C +G      CP GL++D ++ +C +P  
Sbjct: 4   RPDGLYPD--PGDCSKYYQCSNGKAVVFTCPAGLVFDPALGTCDYPDN 49



 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 71  LKNSYYPDSIQCDLYYHCSDGQLVEEKLCPDGLLFDDSNPAHERCDTNVNV 121
             +  YPD   C  YY CS+G+ V    CP GL+F   +PA   CD   NV
Sbjct: 4   RPDGLYPDPGDCSKYYQCSNGKAVVFT-CPAGLVF---DPALGTCDYPDNV 50


>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2. 
          Length = 49

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 225 FPHPEDCQKFYICRNGVQAQYGSCPAGSVYNEESFKCDEP 264
           +PHP DC K+Y C NG +   GSCPAG V+N  +  CD P
Sbjct: 11  YPHPTDCSKYYQCSNG-RPIVGSCPAGLVFNPATQTCDWP 49



 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 139 PRANGFFRHYDEKVCDKFVNCVDGVPNELPCPPGLIYDDSVSSCAWP 185
            R +G + H  +  C K+  C +G P    CP GL+++ +  +C WP
Sbjct: 5   GRGDGLYPHPTD--CSKYYQCSNGRPIVGSCPAGLVFNPATQTCDWP 49



 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 64  FKCPVDKLKNSYYPDSIQCDLYYHCSDGQLVEEKLCPDGLLFDDSN 109
            +CP     +  YP    C  YY CS+G+ +    CP GL+F+ + 
Sbjct: 1   NECPGRG--DGLYPHPTDCSKYYQCSNGRPIVGS-CPAGLVFNPAT 43


>gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative
           DEAH-box helicase.  A conserved gene neighborhood widely
           spread in the Actinobacteria contains this
           uncharacterized DEAH-box family helicase encoded
           convergently towards an operon of genes for protein
           homologous to type II secretion and pilus formation
           proteins. The context suggests that this helicase may
           play a role in conjugal transfer of DNA.
          Length = 742

 Score = 29.3 bits (66), Expect = 2.9
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 30  LVLSDSRRLCIRYNADFPTFLNLVSAGLAQSQVAF 64
           LVL   RRLC RY A  P F+ L SA  A    A 
Sbjct: 179 LVLRRLRRLCARYGAS-PVFV-LASATTADPAAAA 211


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.136    0.442 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,068,717
Number of extensions: 1261632
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 12
Length of query: 287
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 191
Effective length of database: 6,679,618
Effective search space: 1275807038
Effective search space used: 1275807038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)