RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10483
(287 letters)
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus
tridentatus} SCOP: g.31.1.1
Length = 74
Score = 52.1 bits (125), Expect = 2e-09
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 204 GFSCPDGEVMGPNGRPLPHPTFPHPEDCQKFYICRNGVQAQYGSCPAGSVYNEESFKCDE 263
F C +G + C FY C + A+ +CP G YN CD
Sbjct: 3 AFRCGRYSPCLDDG------PNVNLYSCCSFYNCHKCL-ARLENCPKGLHYNAYLKVCDW 55
Query: 264 PENVPGCENWFGEDN 278
P GC + E +
Sbjct: 56 PSKA-GCTSVNKECH 69
Score = 47.9 bits (114), Expect = 7e-08
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 138 CPRANGFFRHYDEKVCDKFVNCVDGVPNELPCPPGLIYDDSVSSCAWPSENTRKDCTVTK 197
+G + C F NC + CP GL Y+ + C WPS + CT
Sbjct: 11 PCLDDGPNVN--LYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPS---KAGCTSVN 65
Query: 198 KDT 200
K+
Sbjct: 66 KEC 68
Score = 47.1 bits (112), Expect = 1e-07
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 62 VAFKCPV--DKLKNSYYPDSIQCDLYYHCSDGQLVEEKLCPDGLLFDDSNPAHERCDTNV 119
+AF+C L + + C +Y+C E CP GL + N + CD
Sbjct: 2 LAFRCGRYSPCLDDGPNVNLYSCCSFYNCHKCLARLEN-CPKGLHY---NAYLKVCDWPS 57
Query: 120 NVECGERTE 128
C +
Sbjct: 58 KAGCTSVNK 66
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 50.9 bits (122), Expect = 2e-07
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 1/78 (1%)
Query: 185 PSENTRKDCTVTKKDTLTDGFSCPDGEVMGPNGRPLPHPTFPHPEDCQKFYICRNGVQAQ 244
P + K + +P+P + FY C G Q
Sbjct: 367 PYLPSGTPELEVPKPGQPSEPEHGPSPGQDTFCQGKADGLYPNPRERSSFYSCAAGRLFQ 426
Query: 245 YGSCPAGSVYNEESFKCD 262
SCP G V++ C
Sbjct: 427 Q-SCPTGLVFSNSCKCCT 443
Score = 48.2 bits (115), Expect = 1e-06
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 132 PKPTKGCPRANGFFRHYDEKVCDKFVNCVDGVPNELPCPPGLIYDDSVSSCAW 184
+ T +A+G + + + F +C G + CP GL++ +S C W
Sbjct: 394 GQDTFCQGKADGLYPN--PRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444
Score = 45.1 bits (107), Expect = 2e-05
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 66 CPVDKLKNSYYPDSIQCDLYYHCSDGQLVEEKLCPDGLLFDDSNPAHERCD 116
+ YP+ + +Y C+ G+L ++ CP GL+F +S C
Sbjct: 397 TFCQGKADGLYPNPRERSSFYSCAAGRLFQQS-CPTGLVFSNSCK---CCT 443
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.003
Identities = 34/220 (15%), Positives = 58/220 (26%), Gaps = 47/220 (21%)
Query: 85 YYHCSDGQLVEEKLCPDGLLFDDSNPAHERCDTNVNVECGER-----TE----LQEPKPT 135
++H D + E + +L + + D +V+ + E +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 136 KGCPRANGFFRHYDEKVCDKFVNCVDGVPNELPCPPGLIYDDSVSSCAWPSENTRKDCTV 195
G R E++ KFV V N + + PS TR +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLR-INY-----KFLMSPIKTEQRQPSMMTRM--YI 113
Query: 196 TKKDTLTDGFSCPDGEVMGPNGRPLPHPTF----------PHPEDCQKFYICRNGVQAQY 245
++D L D +V P P + +GV
Sbjct: 114 EQRDRL-----YNDNQVFAKYNVSRLQPYLKLRQALLELRPAK------NVLIDGV-LGS 161
Query: 246 G-SCPAGSVYNEESFKCDEPENVPGCENW--FGEDNSTGD 282
G + A V +C + W NS
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKI----FWLNLKNCNSPET 197
Score = 33.3 bits (75), Expect = 0.11
Identities = 28/182 (15%), Positives = 50/182 (27%), Gaps = 53/182 (29%)
Query: 17 FGSSSKLLEQGNYLVLSDSRRLCIRYNADFPTF-LNLVSAGLAQSQVAFKCPVDKLKNSY 75
G + L+ V + C DF F LNL S ++ L+
Sbjct: 161 SGKTWVALD-----VCLSYKVQC---KMDFKIFWLNL---KNCNSPETV---LEMLQKLL 206
Query: 76 Y----PDSIQCD----LYYHCSDGQ-----LVEEKLCPDGLL-FDD-SNPAH-----ERC 115
Y + + D + Q L++ K + LL + N C
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 116 -------DTNV--NVECGERTELQEPKPTKGCPRANGFFRHYDEKVCDKFVNCVDGVPNE 166
V + T + + + + K+++C P +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMT------LTPDEVKSLLLKYLDCR---PQD 317
Query: 167 LP 168
LP
Sbjct: 318 LP 319
Score = 27.5 bits (60), Expect = 5.8
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 22/125 (17%)
Query: 6 YQSGAVVQALDFGSSSKLLE----QGNYLVLS----D----SRRLCIRYNADFPTFLNLV 53
+ ++ SS +LE + + LS + L + + + + +V
Sbjct: 350 VNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 54 SAGLAQSQVAFKCPVDKLKNSYYPDSIQCDLYYHCSD-----GQLVEEKLCPDGLLFDDS 108
L + + K +++ SI +L + +V+ P DD
Sbjct: 408 VNKLHKYSLVEK---QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 109 NPAHE 113
P +
Sbjct: 465 IPPYL 469
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.027
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 38/127 (29%)
Query: 1 MGTTTYQSGAVVQALDFGSSSKLLEQGNYLVLSDSRRLCIRYNADFPTFLNLVSAGLAQS 60
MG Y++ Q + + + + + D + N P L + G +
Sbjct: 1631 MGMDLYKTSKAAQDV-WNRADNHFKDTYGFSILD----IVINN---PVNLT-IHFGGEKG 1681
Query: 61 QVAFKCPVDKLKNSYYPDSIQCDLYYHCSDGQLVEEKLC--------------PDGLLFD 106
+ +++ +Y ++ + DG+L EK+ GLL
Sbjct: 1682 K--------RIRENY--SAMIFE---TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 107 DSN--PA 111
PA
Sbjct: 1729 TQFTQPA 1735
Score = 32.7 bits (74), Expect = 0.14
Identities = 30/187 (16%), Positives = 45/187 (24%), Gaps = 70/187 (37%)
Query: 2 GTTTYQSGAVVQALDFGSSSKLLEQGNYLVLSDSRRLCI-RYNADFPTFLNLVSAGLAQS 60
G + + L + + N L +++ I N NLV +G QS
Sbjct: 333 GVPSPM--LSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVNG--AK--NLVVSGPPQS 385
Query: 61 QVAFKCPVDKLKNSYYPDSIQCDLYYHCSDGQLVEEKLCPDGLLFDDSN-PAHERCDTNV 119
+ K K P GL D S P ER
Sbjct: 386 LYGLNLTLRKAK--------------------------APSGL--DQSRIPFSER----- 412
Query: 120 NVECGERTELQEPKPTK-----GCPRANGFFRHYDEKVCDKFVNCVDGV-----PNELPC 169
+ K + P F H D + ++
Sbjct: 413 -----------KLKFSNRFLPVASP----FHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 170 PPGLIYD 176
P +YD
Sbjct: 458 P---VYD 461
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 633
Score = 31.1 bits (70), Expect = 0.52
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 114 RCDTNVNVECGERTELQ 130
R D NV+++ G R E++
Sbjct: 227 RQDLNVSIKGGARIEIK 243
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 30.6 bits (68), Expect = 0.70
Identities = 37/236 (15%), Positives = 54/236 (22%), Gaps = 35/236 (14%)
Query: 76 YPDSIQCDLYYHCSDG---QLVEEKLCPDGLLFDDSN---PAHERCDTNVN-----VECG 124
CD C DG C +S+ P CD + + E
Sbjct: 119 ISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP 178
Query: 125 ERTELQEPKPTKGCPRANGFFRHYD------EKVCDKFVNCVDG-----------VPNEL 167
+R P + F CD +C D P+E
Sbjct: 179 QRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEF 238
Query: 168 PCP-----PGLIYDDSVSSCAWPSENTRKDCTVTKKDTLTDGFSCPDGEVMGPNGRPLPH 222
C G D C S+ + + F C GE + +
Sbjct: 239 QCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGP--NKFKCHSGECITLDKVCNMA 296
Query: 223 PTFPHPEDCQKFYICRNGVQAQYGSCPAGSVYNEESFKCDEPENVPGCENWFGEDN 278
D N G C + ++C P+ ED
Sbjct: 297 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDI 352
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 29.5 bits (67), Expect = 1.2
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 13/66 (19%)
Query: 1 MGTTTYQ--SGAVVQALDFGSSSKLLEQ----GNYLVLSDSRRLCIRYNADFPTFLNLVS 54
G T+ G+ G +KL Q ++++ + AD ++
Sbjct: 183 FGRATHVGPHGS-------GQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAIT 235
Query: 55 AGLAQS 60
G A S
Sbjct: 236 GGFADS 241
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 27.9 bits (62), Expect = 4.7
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 114 RCDTNVNVECGERTELQEP 132
R D N+++ G R E++
Sbjct: 221 RQDLNISIRDGARVEVKGV 239
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease,
lyase; 1.7A {Archaeoglobus fulgidus}
Length = 257
Score = 26.7 bits (60), Expect = 8.2
Identities = 2/12 (16%), Positives = 4/12 (33%)
Query: 215 PNGRPLPHPTFP 226
P G + +
Sbjct: 107 PQGFKIDSEKYQ 118
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA
repair, exonuclease, endonuclease; HET: 1PE; 1.90A
{Neisseria meningitidis}
Length = 256
Score = 26.7 bits (60), Expect = 8.8
Identities = 5/12 (41%), Positives = 5/12 (41%)
Query: 215 PNGRPLPHPTFP 226
NG L P F
Sbjct: 107 VNGEALDSPKFK 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.442
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,426,907
Number of extensions: 256120
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 54
Length of query: 287
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 194
Effective length of database: 4,105,140
Effective search space: 796397160
Effective search space used: 796397160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)