RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10483
         (287 letters)



>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus
           tridentatus) [TaxId: 6853]}
          Length = 73

 Score = 47.6 bits (113), Expect = 3e-08
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 224 TFPHPEDCQKFYICRNGVQAQYGSCPAGSVYNEESFKCDEPENVPGCEN 272
              +   C  FY C     A+  +CP G  YN     CD P    GC +
Sbjct: 17  PNVNLYSCCSFYNCHKC-LARLENCPKGLHYNAYLKVCDWPSKA-GCTS 63



 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 62  VAFKCP--VDKLKNSYYPDSIQCDLYYHCSDGQLVEEKLCPDGLLFDDSNPAHERCDTNV 119
           +AF+C      L +    +   C  +Y+C        + CP GL +   N   + CD   
Sbjct: 2   LAFRCGRYSPCLDDGPNVNLYSCCSFYNCHKCLAR-LENCPKGLHY---NAYLKVCDWPS 57

Query: 120 NVECGERTE 128
              C    +
Sbjct: 58  KAGCTSVNK 66



 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 134 PTKGCPRANGFFRHYDEKVCDKFVNCVDGVPNELPCPPGLIYDDSVSSCAWPSENTRKDC 193
                   +G   +     C  F NC   +     CP GL Y+  +  C WPS   +  C
Sbjct: 7   GRYSPCLDDGPNVN--LYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPS---KAGC 61

Query: 194 TVTKKD 199
           T   K+
Sbjct: 62  TSVNKE 67


>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln)
           amidotransferase subunit E, GatE {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 319

 Score = 26.3 bits (57), Expect = 4.8
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 109 NPAHERCDTNVNVECGERTELQE 131
                R D N+++  G R E++ 
Sbjct: 216 GLGTIRQDLNISIRDGARVEVKG 238


>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial
           cytochrome bc1-complex, water-soluble domain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 129

 Score = 25.1 bits (54), Expect = 6.9
 Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 9/41 (21%)

Query: 192 DCTVTKKDTLTDGFSCP--------DGEVM-GPNGRPLPHP 223
            C    +     G+ CP         G +  GP    L  P
Sbjct: 77  GCVPIGEAGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIP 117


>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln)
           amidotransferase subunit E, GatE {Pyrococcus abyssi
           [TaxId: 29292]}
          Length = 321

 Score = 25.5 bits (55), Expect = 8.1
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 107 DSNPAHERCDTNVNVECGERTELQE 131
                  R D NV+++ G R E++ 
Sbjct: 216 KRGLGTIRQDLNVSIKGGARIEIKG 240


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.136    0.442 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,130,436
Number of extensions: 55336
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 26
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)