Query psy10486
Match_columns 183
No_of_seqs 155 out of 1745
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 19:24:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.8 2E-20 6.9E-25 123.3 8.5 75 6-80 7-81 (84)
2 2dmt_A Homeobox protein BARH-l 99.8 2.5E-20 8.5E-25 121.8 7.7 68 13-80 9-76 (80)
3 1wh5_A ZF-HD homeobox family p 99.8 4.7E-20 1.6E-24 120.3 8.4 64 15-78 11-78 (80)
4 1wh7_A ZF-HD homeobox family p 99.8 7.6E-20 2.6E-24 119.1 8.0 64 14-78 10-78 (80)
5 2da3_A Alpha-fetoprotein enhan 99.8 5.3E-20 1.8E-24 120.2 5.9 67 14-80 10-76 (80)
6 1b72_A Protein (homeobox prote 99.8 1.3E-19 4.3E-24 122.6 7.0 84 57-140 2-94 (97)
7 2cra_A Homeobox protein HOX-B1 99.8 2.4E-19 8.2E-24 114.2 7.2 63 18-80 4-66 (70)
8 2da2_A Alpha-fetoprotein enhan 99.8 3.9E-19 1.3E-23 113.2 6.9 64 17-80 3-66 (70)
9 2djn_A Homeobox protein DLX-5; 99.8 4.8E-19 1.6E-23 112.7 6.8 63 18-80 4-66 (70)
10 2vi6_A Homeobox protein nanog; 99.8 3.8E-19 1.3E-23 110.6 6.0 59 20-78 2-60 (62)
11 2dmu_A Homeobox protein goosec 99.8 5E-19 1.7E-23 112.6 6.3 61 19-79 5-65 (70)
12 2hdd_A Protein (engrailed home 99.8 3.4E-19 1.2E-23 110.4 5.0 59 20-78 2-60 (61)
13 2da1_A Alpha-fetoprotein enhan 99.8 4.2E-19 1.4E-23 113.0 5.5 63 18-80 4-66 (70)
14 1puf_A HOX-1.7, homeobox prote 99.8 6.8E-19 2.3E-23 114.1 6.5 65 16-80 8-72 (77)
15 1ig7_A Homeotic protein MSX-1; 99.8 5.5E-19 1.9E-23 108.4 5.5 56 22-77 1-56 (58)
16 2l7z_A Homeobox protein HOX-A1 99.8 1.1E-18 3.6E-23 112.0 7.0 65 18-82 4-68 (73)
17 2h1k_A IPF-1, pancreatic and d 99.8 4.9E-19 1.7E-23 110.4 5.2 59 20-78 2-60 (63)
18 1bw5_A ISL-1HD, insulin gene e 99.8 7.7E-19 2.6E-23 110.5 6.2 60 20-79 2-61 (66)
19 2dms_A Homeobox protein OTX2; 99.8 8.9E-19 3E-23 114.3 6.7 63 19-81 5-67 (80)
20 1nk2_P Homeobox protein VND; h 99.8 8.9E-19 3E-23 113.5 6.6 63 17-79 5-67 (77)
21 2cue_A Paired box protein PAX6 99.8 2.9E-18 9.9E-23 111.9 8.8 70 79-148 6-75 (80)
22 1fjl_A Paired protein; DNA-bin 99.8 6.3E-19 2.1E-23 115.3 5.4 63 17-79 14-76 (81)
23 2e1o_A Homeobox protein PRH; D 99.8 1.1E-18 3.9E-23 111.0 6.3 62 19-80 5-66 (70)
24 2cue_A Paired box protein PAX6 99.8 9.2E-19 3.1E-23 114.3 5.8 62 19-80 5-66 (80)
25 1zq3_P PRD-4, homeotic bicoid 99.8 9.7E-19 3.3E-23 110.7 5.3 62 20-81 1-62 (68)
26 2dmq_A LIM/homeobox protein LH 99.7 1.5E-18 5E-23 113.3 6.2 62 19-80 5-66 (80)
27 1jgg_A Segmentation protein EV 99.7 1.1E-18 3.7E-23 107.8 5.2 57 22-78 2-58 (60)
28 1b8i_A Ultrabithorax, protein 99.7 1.6E-18 5.5E-23 113.3 5.8 62 18-79 17-78 (81)
29 1akh_A Protein (mating-type pr 99.7 1.3E-18 4.4E-23 107.8 5.0 58 19-76 3-60 (61)
30 3a01_A Homeodomain-containing 99.7 2.9E-18 9.9E-23 115.0 7.0 66 16-81 12-77 (93)
31 2r5y_A Homeotic protein sex co 99.7 1.4E-18 4.9E-23 115.4 5.5 63 17-79 24-86 (88)
32 2m0c_A Homeobox protein arista 99.7 3.2E-18 1.1E-22 110.3 6.9 64 18-81 6-69 (75)
33 1ahd_P Antennapedia protein mu 99.7 1.4E-18 4.7E-23 110.0 4.9 61 21-81 2-62 (68)
34 3rkq_A Homeobox protein NKX-2. 99.7 2.5E-18 8.4E-23 105.4 5.8 56 21-76 2-57 (58)
35 1ftt_A TTF-1 HD, thyroid trans 99.7 2.1E-18 7.2E-23 109.1 5.6 61 21-81 2-62 (68)
36 1wi3_A DNA-binding protein SAT 99.7 3.8E-18 1.3E-22 105.4 6.5 58 18-75 4-62 (71)
37 2k40_A Homeobox expressed in E 99.7 2.2E-18 7.5E-23 108.7 5.4 60 21-80 1-60 (67)
38 2h1k_A IPF-1, pancreatic and d 99.7 3.2E-18 1.1E-22 106.7 6.1 60 80-139 3-62 (63)
39 2da5_A Zinc fingers and homeob 99.7 4.1E-18 1.4E-22 109.8 6.7 59 23-81 9-67 (75)
40 1yz8_P Pituitary homeobox 2; D 99.7 8E-19 2.7E-23 111.1 3.3 62 20-81 2-63 (68)
41 3a02_A Homeobox protein arista 99.7 2.1E-18 7.3E-23 106.5 4.9 56 24-79 2-57 (60)
42 1ig7_A Homeotic protein MSX-1; 99.7 4.7E-18 1.6E-22 104.2 6.3 57 81-137 1-57 (58)
43 2dmq_A LIM/homeobox protein LH 99.7 2.6E-18 8.8E-23 112.2 5.4 64 79-142 6-69 (80)
44 1zq3_P PRD-4, homeotic bicoid 99.7 7.2E-18 2.5E-22 106.6 7.1 62 80-141 2-63 (68)
45 2dms_A Homeobox protein OTX2; 99.7 1.8E-18 6E-23 112.9 4.4 64 78-141 5-68 (80)
46 2hdd_A Protein (engrailed home 99.7 4.1E-18 1.4E-22 105.5 5.8 58 80-137 3-60 (61)
47 2da4_A Hypothetical protein DK 99.7 1.4E-18 4.7E-23 113.4 3.8 61 18-78 5-69 (80)
48 2ecc_A Homeobox and leucine zi 99.7 4.5E-18 1.6E-22 108.9 6.0 57 23-79 5-61 (76)
49 2vi6_A Homeobox protein nanog; 99.7 2.5E-18 8.4E-23 106.9 4.3 59 80-138 3-61 (62)
50 3nar_A ZHX1, zinc fingers and 99.7 3.6E-18 1.2E-22 115.2 5.4 62 17-78 21-82 (96)
51 1puf_A HOX-1.7, homeobox prote 99.7 1.2E-17 4.1E-22 108.2 7.4 63 79-141 12-74 (77)
52 1jgg_A Segmentation protein EV 99.7 6.1E-18 2.1E-22 104.4 5.6 58 81-138 2-59 (60)
53 2dn0_A Zinc fingers and homeob 99.7 1.1E-17 3.8E-22 108.1 7.1 61 21-81 8-68 (76)
54 2ecb_A Zinc fingers and homeob 99.7 2.7E-18 9.2E-23 113.6 3.9 65 83-147 14-78 (89)
55 1nk2_P Homeobox protein VND; h 99.7 1.3E-17 4.5E-22 108.0 7.1 64 78-141 7-70 (77)
56 2ecc_A Homeobox and leucine zi 99.7 9.3E-18 3.2E-22 107.4 6.3 58 82-139 5-62 (76)
57 3a02_A Homeobox protein arista 99.7 6.3E-18 2.2E-22 104.3 5.3 58 83-140 2-59 (60)
58 3a03_A T-cell leukemia homeobo 99.7 9.4E-18 3.2E-22 102.1 5.9 54 85-138 2-55 (56)
59 2dmu_A Homeobox protein goosec 99.7 1E-17 3.5E-22 106.5 6.3 62 79-140 6-67 (70)
60 1b72_A Protein (homeobox prote 99.7 3.9E-18 1.3E-22 115.2 4.5 64 17-80 30-93 (97)
61 1ftt_A TTF-1 HD, thyroid trans 99.7 8E-18 2.7E-22 106.4 5.7 61 80-140 2-62 (68)
62 1uhs_A HOP, homeodomain only p 99.7 7E-18 2.4E-22 107.9 5.4 60 22-81 2-62 (72)
63 2dmp_A Zinc fingers and homeob 99.7 1.4E-17 4.8E-22 110.7 7.1 56 26-81 18-73 (89)
64 1ahd_P Antennapedia protein mu 99.7 5.7E-18 2E-22 107.1 4.9 61 80-140 2-62 (68)
65 2ly9_A Zinc fingers and homeob 99.7 1.7E-17 5.7E-22 106.7 7.2 62 20-81 5-66 (74)
66 1fjl_A Paired protein; DNA-bin 99.7 1.5E-17 5.1E-22 108.8 7.0 63 78-140 16-78 (81)
67 2cra_A Homeobox protein HOX-B1 99.7 6.5E-18 2.2E-22 107.5 5.0 61 79-139 6-66 (70)
68 2dmt_A Homeobox protein BARH-l 99.7 8.5E-18 2.9E-22 109.7 5.7 62 78-139 15-76 (80)
69 2hi3_A Homeodomain-only protei 99.7 8.4E-18 2.9E-22 107.8 5.5 61 21-81 2-63 (73)
70 1e3o_C Octamer-binding transcr 99.7 6.1E-18 2.1E-22 124.2 5.4 62 17-78 97-158 (160)
71 1du6_A PBX1, homeobox protein 99.7 1E-17 3.5E-22 104.7 5.6 59 20-78 2-63 (64)
72 2e1o_A Homeobox protein PRH; D 99.7 1.5E-17 5.2E-22 105.7 6.5 61 79-139 6-66 (70)
73 3a03_A T-cell leukemia homeobo 99.7 7.1E-18 2.4E-22 102.6 4.5 53 26-78 2-54 (56)
74 1uhs_A HOP, homeodomain only p 99.7 2.2E-17 7.7E-22 105.5 6.9 58 82-139 3-61 (72)
75 3rkq_A Homeobox protein NKX-2. 99.7 1.8E-17 6.1E-22 101.5 6.2 57 80-136 2-58 (58)
76 2da2_A Alpha-fetoprotein enhan 99.7 1.2E-17 4.2E-22 106.2 5.5 61 79-139 6-66 (70)
77 1yz8_P Pituitary homeobox 2; D 99.7 6.2E-18 2.1E-22 106.9 4.0 62 80-141 3-64 (68)
78 2hi3_A Homeodomain-only protei 99.7 2.3E-17 8E-22 105.7 6.6 59 81-139 3-62 (73)
79 2da3_A Alpha-fetoprotein enhan 99.7 1.4E-17 4.9E-22 108.6 5.6 62 78-139 15-76 (80)
80 1x2n_A Homeobox protein pknox1 99.7 2E-17 6.8E-22 106.0 6.2 61 18-78 4-67 (73)
81 2djn_A Homeobox protein DLX-5; 99.7 1.1E-17 3.8E-22 106.3 4.9 61 79-139 6-66 (70)
82 3a01_A Homeodomain-containing 99.7 1.1E-17 3.8E-22 112.1 5.1 66 78-143 15-80 (93)
83 1bw5_A ISL-1HD, insulin gene e 99.7 1.2E-17 4E-22 105.1 4.9 60 80-139 3-62 (66)
84 1akh_A Protein (mating-type pr 99.7 1.3E-17 4.3E-22 103.3 4.9 58 79-136 4-61 (61)
85 2da1_A Alpha-fetoprotein enhan 99.7 1.3E-17 4.4E-22 106.1 5.0 61 79-139 6-66 (70)
86 2l7z_A Homeobox protein HOX-A1 99.7 1.9E-17 6.6E-22 106.1 5.8 61 79-139 6-66 (73)
87 2k40_A Homeobox expressed in E 99.7 2.6E-17 9E-22 103.7 6.2 60 81-140 2-61 (67)
88 1b8i_A Ultrabithorax, protein 99.7 1.5E-17 5E-22 108.8 5.1 62 79-140 19-80 (81)
89 2da4_A Hypothetical protein DK 99.7 2E-17 6.7E-22 107.9 5.6 62 78-139 6-71 (80)
90 1puf_B PRE-B-cell leukemia tra 99.7 2.3E-17 7.8E-22 105.8 5.8 60 21-80 1-63 (73)
91 2kt0_A Nanog, homeobox protein 99.7 9.1E-18 3.1E-22 110.5 4.0 63 78-140 20-82 (84)
92 2cuf_A FLJ21616 protein; homeo 99.7 1.6E-17 5.6E-22 111.7 5.3 65 18-82 4-83 (95)
93 2ecb_A Zinc fingers and homeob 99.7 4.3E-17 1.5E-21 107.8 7.1 56 26-81 16-71 (89)
94 2r5y_A Homeotic protein sex co 99.7 2E-17 6.8E-22 109.8 5.3 61 79-139 27-87 (88)
95 2xsd_C POU domain, class 3, tr 99.7 1.8E-17 6.1E-22 122.1 5.3 66 15-80 93-158 (164)
96 1k61_A Mating-type protein alp 99.7 2.9E-17 9.9E-22 101.3 5.3 55 24-78 1-58 (60)
97 1au7_A Protein PIT-1, GHF-1; c 99.7 1.6E-17 5.4E-22 120.2 4.6 64 15-78 81-144 (146)
98 2da5_A Zinc fingers and homeob 99.7 2.7E-17 9.1E-22 106.0 5.2 60 81-140 8-67 (75)
99 1wh5_A ZF-HD homeobox family p 99.7 1.7E-17 5.8E-22 108.1 4.2 59 79-137 16-78 (80)
100 3nau_A Zinc fingers and homeob 99.7 6E-17 2E-21 100.3 6.0 53 87-139 11-63 (66)
101 2m0c_A Homeobox protein arista 99.7 4.8E-17 1.6E-21 104.8 5.8 62 79-140 8-69 (75)
102 1b72_B Protein (PBX1); homeodo 99.7 5.6E-17 1.9E-21 107.4 5.4 60 21-80 1-63 (87)
103 1b72_B Protein (PBX1); homeodo 99.7 6.8E-17 2.3E-21 107.0 5.8 67 81-147 2-71 (87)
104 2dmn_A Homeobox protein TGIF2L 99.7 1E-16 3.6E-21 105.1 6.5 61 19-79 5-68 (83)
105 2ly9_A Zinc fingers and homeob 99.7 5.1E-17 1.7E-21 104.4 5.0 60 80-139 6-65 (74)
106 1mnm_C Protein (MAT alpha-2 tr 99.7 9.4E-17 3.2E-21 106.3 6.1 60 18-77 24-86 (87)
107 1lfb_A Liver transcription fac 99.7 7E-17 2.4E-21 109.0 5.4 64 17-80 5-89 (99)
108 1puf_B PRE-B-cell leukemia tra 99.7 6.4E-17 2.2E-21 103.7 4.8 61 81-141 2-65 (73)
109 2da6_A Hepatocyte nuclear fact 99.7 8.8E-17 3E-21 108.3 5.6 62 18-79 3-85 (102)
110 1k61_A Mating-type protein alp 99.7 1.1E-16 3.9E-21 98.6 5.7 55 84-138 2-59 (60)
111 3d1n_I POU domain, class 6, tr 99.7 5.6E-17 1.9E-21 118.0 4.9 63 16-78 88-150 (151)
112 1du6_A PBX1, homeobox protein 99.7 7.8E-17 2.7E-21 100.6 4.6 58 80-137 3-63 (64)
113 1wh7_A ZF-HD homeobox family p 99.7 4.2E-17 1.4E-21 106.1 3.3 58 79-137 16-78 (80)
114 2dn0_A Zinc fingers and homeob 99.7 7.7E-17 2.6E-21 104.1 4.4 60 81-140 9-68 (76)
115 2cqx_A LAG1 longevity assuranc 99.6 4.7E-17 1.6E-21 103.9 3.2 60 20-79 7-67 (72)
116 2cuf_A FLJ21616 protein; homeo 99.6 2.1E-16 7.1E-21 106.3 6.3 63 79-141 6-83 (95)
117 3nar_A ZHX1, zinc fingers and 99.6 1.2E-16 4.1E-21 107.7 5.1 61 79-139 24-84 (96)
118 2dmp_A Zinc fingers and homeob 99.6 6.5E-17 2.2E-21 107.4 3.6 60 83-142 16-75 (89)
119 2da6_A Hepatocyte nuclear fact 99.6 6.6E-16 2.3E-20 104.0 8.4 67 79-145 5-92 (102)
120 1le8_B Mating-type protein alp 99.6 1.9E-16 6.5E-21 103.9 5.6 57 22-78 3-62 (83)
121 2cqx_A LAG1 longevity assuranc 99.6 9E-17 3.1E-21 102.6 3.8 58 81-138 9-67 (72)
122 3nau_A Zinc fingers and homeob 99.6 1.2E-16 4E-21 98.9 4.1 51 28-78 11-61 (66)
123 1x2n_A Homeobox protein pknox1 99.6 3.7E-16 1.3E-20 100.1 6.5 61 79-139 6-69 (73)
124 2e19_A Transcription factor 8; 99.6 2.7E-16 9.1E-21 98.1 5.7 53 26-78 8-60 (64)
125 1le8_B Mating-type protein alp 99.6 2.2E-16 7.4E-21 103.6 5.5 64 82-145 4-70 (83)
126 2l9r_A Homeobox protein NKX-3. 99.6 3E-16 1E-20 99.1 5.7 55 26-80 9-63 (69)
127 2l9r_A Homeobox protein NKX-3. 99.6 1.7E-16 5.6E-21 100.3 3.7 55 85-139 9-63 (69)
128 1wi3_A DNA-binding protein SAT 99.6 5.4E-16 1.8E-20 95.8 5.6 57 78-134 5-62 (71)
129 1lfb_A Liver transcription fac 99.6 2E-16 6.8E-21 106.8 3.6 67 76-142 5-92 (99)
130 2e19_A Transcription factor 8; 99.6 4.6E-16 1.6E-20 97.0 4.8 54 84-137 7-60 (64)
131 1x2m_A LAG1 longevity assuranc 99.6 3.5E-16 1.2E-20 96.9 3.9 51 87-137 7-58 (64)
132 1mnm_C Protein (MAT alpha-2 tr 99.6 9E-16 3.1E-20 101.5 6.0 57 80-136 27-86 (87)
133 2d5v_A Hepatocyte nuclear fact 99.6 7E-16 2.4E-20 113.7 6.0 63 17-79 93-155 (164)
134 2dmn_A Homeobox protein TGIF2L 99.6 1.5E-15 5E-20 99.6 6.4 62 79-140 6-70 (83)
135 3l1p_A POU domain, class 5, tr 99.6 9.7E-16 3.3E-20 111.8 5.3 60 19-78 94-153 (155)
136 1x2m_A LAG1 longevity assuranc 99.6 8.9E-16 3.1E-20 95.1 4.2 49 30-78 9-58 (64)
137 2xsd_C POU domain, class 3, tr 99.6 7.3E-16 2.5E-20 113.4 3.9 121 19-141 22-160 (164)
138 1au7_A Protein PIT-1, GHF-1; c 99.6 1.7E-15 5.9E-20 109.4 5.3 111 26-138 19-145 (146)
139 1e3o_C Octamer-binding transcr 99.6 2.1E-15 7.1E-20 110.7 5.5 60 79-138 100-159 (160)
140 3d1n_I POU domain, class 6, tr 99.6 2.7E-15 9.2E-20 109.1 5.7 60 78-137 91-150 (151)
141 3l1p_A POU domain, class 5, tr 99.6 5.4E-15 1.9E-19 107.9 6.4 115 22-138 22-154 (155)
142 1ic8_A Hepatocyte nuclear fact 99.5 1.8E-15 6.1E-20 113.8 3.3 62 16-77 110-192 (194)
143 3k2a_A Homeobox protein MEIS2; 99.5 4.2E-15 1.4E-19 93.5 4.4 58 85-142 3-63 (67)
144 3k2a_A Homeobox protein MEIS2; 99.5 8.7E-15 3E-19 92.0 4.5 52 27-78 4-58 (67)
145 2h8r_A Hepatocyte nuclear fact 99.5 1.2E-14 4.1E-19 110.5 5.7 65 12-76 133-218 (221)
146 2d5v_A Hepatocyte nuclear fact 99.5 1.3E-14 4.5E-19 106.8 4.5 63 79-141 96-158 (164)
147 2da7_A Zinc finger homeobox pr 99.5 5.7E-14 1.9E-18 87.3 4.3 46 30-75 14-59 (71)
148 1ic8_A Hepatocyte nuclear fact 99.4 7.6E-14 2.6E-18 104.9 4.1 59 79-137 114-193 (194)
149 2da7_A Zinc finger homeobox pr 99.4 4.6E-13 1.6E-17 83.2 5.2 48 87-134 12-59 (71)
150 2lk2_A Homeobox protein TGIF1; 99.4 7.3E-13 2.5E-17 86.9 6.3 57 86-142 11-70 (89)
151 2lk2_A Homeobox protein TGIF1; 99.3 8.9E-13 3E-17 86.5 4.4 53 26-78 10-65 (89)
152 2h8r_A Hepatocyte nuclear fact 99.3 3.5E-12 1.2E-16 96.9 4.8 59 77-135 139-218 (221)
153 1mh3_A Maltose binding-A1 home 99.2 1.8E-11 6E-16 101.5 5.1 56 22-77 366-421 (421)
154 1mh3_A Maltose binding-A1 home 99.1 2E-11 6.8E-16 101.2 3.2 56 81-136 366-421 (421)
155 2nzz_A Penetratin conjugated G 98.5 8E-09 2.7E-13 56.3 -0.2 24 122-145 1-24 (37)
156 2nzz_A Penetratin conjugated G 97.7 4E-06 1.4E-10 45.6 -0.5 19 63-81 1-19 (37)
157 1u78_A TC3 transposase, transp 97.1 0.005 1.7E-07 42.6 9.6 99 26-133 5-105 (141)
158 2ys9_A Homeobox and leucine zi 96.5 0.0091 3.1E-07 36.7 5.8 39 34-72 19-57 (70)
159 2ys9_A Homeobox and leucine zi 96.3 0.003 1E-07 38.9 3.1 44 87-130 13-56 (70)
160 2k27_A Paired box protein PAX- 96.3 0.16 5.6E-06 35.8 13.2 100 26-130 24-134 (159)
161 1pdn_C Protein (PRD paired); p 95.6 0.17 5.8E-06 33.8 10.0 99 26-129 16-125 (128)
162 1hlv_A CENP-B, major centromer 94.9 0.4 1.4E-05 32.5 10.0 105 23-130 3-125 (131)
163 1k78_A Paired box protein PAX5 94.5 0.48 1.6E-05 32.9 9.8 101 26-131 31-142 (149)
164 3kz3_A Repressor protein CI; f 91.6 0.42 1.4E-05 29.4 5.3 47 52-128 29-75 (80)
165 3omt_A Uncharacterized protein 90.3 0.74 2.5E-05 27.6 5.4 42 52-123 25-66 (73)
166 3bs3_A Putative DNA-binding pr 89.8 0.8 2.8E-05 27.5 5.3 41 52-122 27-67 (76)
167 2xi8_A Putative transcription 89.7 0.82 2.8E-05 26.4 5.1 41 52-122 18-58 (66)
168 2r1j_L Repressor protein C2; p 89.3 0.79 2.7E-05 26.7 4.9 42 51-122 21-62 (68)
169 2glo_A Brinker CG9653-PA; prot 89.3 0.55 1.9E-05 27.3 4.1 46 25-71 3-48 (59)
170 1adr_A P22 C2 repressor; trans 88.6 1 3.5E-05 26.9 5.2 41 52-122 22-62 (76)
171 2b5a_A C.BCLI; helix-turn-heli 88.3 1 3.5E-05 27.1 5.0 42 52-123 27-68 (77)
172 1y7y_A C.AHDI; helix-turn-heli 88.0 1.1 3.8E-05 26.6 5.0 41 52-122 30-70 (74)
173 2kpj_A SOS-response transcript 87.7 1.2 4.3E-05 28.1 5.3 41 52-122 26-66 (94)
174 3b7h_A Prophage LP1 protein 11 87.3 1.4 4.7E-05 26.5 5.1 43 52-123 24-66 (78)
175 3f6w_A XRE-family like protein 86.6 1.6 5.4E-05 26.7 5.2 43 52-124 31-73 (83)
176 2elh_A CG11849-PA, LD40883P; s 85.7 2.5 8.5E-05 26.5 5.9 45 22-71 17-61 (87)
177 2k9q_A Uncharacterized protein 85.6 1.6 5.6E-05 26.3 4.9 43 52-124 19-61 (77)
178 2ewt_A BLDD, putative DNA-bind 85.5 2.2 7.5E-05 25.1 5.3 42 52-123 25-68 (71)
179 3t76_A VANU, transcriptional r 85.3 1.8 6.2E-05 27.5 5.0 59 28-124 24-82 (88)
180 3s8q_A R-M controller protein; 85.1 1.8 6.3E-05 26.4 5.0 42 52-123 28-69 (82)
181 1lmb_3 Protein (lambda repress 84.6 2 6.9E-05 26.8 5.1 42 52-123 34-75 (92)
182 2ict_A Antitoxin HIGA; helix-t 83.9 2.6 9E-05 26.5 5.4 45 52-129 25-69 (94)
183 3op9_A PLI0006 protein; struct 83.1 2.5 8.5E-05 27.6 5.2 20 52-71 26-45 (114)
184 2ofy_A Putative XRE-family tra 82.7 2.6 8.9E-05 25.9 5.0 44 51-123 30-73 (86)
185 1tc3_C Protein (TC3 transposas 82.6 3 0.0001 22.2 4.8 41 26-71 4-44 (51)
186 3g5g_A Regulatory protein; tra 82.6 2.5 8.7E-05 27.2 5.0 43 52-124 45-87 (99)
187 1iuf_A Centromere ABP1 protein 82.1 6.1 0.00021 27.3 7.2 80 22-101 6-95 (144)
188 3lfp_A CSP231I C protein; tran 81.6 3.5 0.00012 26.1 5.4 21 51-71 17-41 (98)
189 3ivp_A Putative transposon-rel 81.0 3.1 0.00011 27.8 5.1 20 52-71 29-48 (126)
190 1hlv_A CENP-B, major centromer 80.8 3.1 0.0001 27.9 5.1 49 83-134 4-52 (131)
191 3vk0_A NHTF, transcriptional r 80.4 3.5 0.00012 27.0 5.2 42 52-123 38-79 (114)
192 3qq6_A HTH-type transcriptiona 80.3 3.4 0.00012 25.1 4.8 43 52-123 27-69 (78)
193 2eby_A Putative HTH-type trans 80.1 3.8 0.00013 26.7 5.3 20 52-71 28-47 (113)
194 3bd1_A CRO protein; transcript 79.8 2.1 7.4E-05 26.0 3.7 21 51-71 14-34 (79)
195 3mlf_A Transcriptional regulat 79.6 3.1 0.00011 27.3 4.7 42 52-123 40-81 (111)
196 1q06_A Transcriptional regulat 78.6 6.9 0.00024 26.8 6.4 45 52-96 4-48 (135)
197 1x57_A Endothelial differentia 78.5 3.1 0.00011 25.9 4.3 42 52-123 30-71 (91)
198 2glo_A Brinker CG9653-PA; prot 78.4 1.9 6.4E-05 24.9 2.9 45 84-129 3-47 (59)
199 1jko_C HIN recombinase, DNA-in 78.3 3 0.0001 22.5 3.8 41 27-72 5-45 (52)
200 2wiu_B HTH-type transcriptiona 78.3 1.6 5.6E-05 26.9 2.8 40 29-71 9-48 (88)
201 2jn6_A Protein CGL2762, transp 78.2 4.4 0.00015 25.7 5.0 46 25-74 3-49 (97)
202 3f52_A CLP gene regulator (CLG 78.1 4.9 0.00017 26.3 5.3 41 52-122 45-85 (117)
203 1r69_A Repressor protein CI; g 77.9 3.2 0.00011 24.0 4.0 20 52-71 18-37 (69)
204 3hug_A RNA polymerase sigma fa 77.0 6.4 0.00022 24.7 5.5 48 87-139 38-85 (92)
205 2a6c_A Helix-turn-helix motif; 76.3 3.6 0.00012 25.3 4.0 20 52-71 35-54 (83)
206 2vz4_A Tipal, HTH-type transcr 76.1 7.4 0.00025 25.4 5.7 66 52-130 5-70 (108)
207 3trb_A Virulence-associated pr 75.1 14 0.00048 23.9 8.0 53 40-128 22-74 (104)
208 2qko_A Possible transcriptiona 75.0 1.1 3.6E-05 32.4 1.4 40 32-72 33-72 (215)
209 3hot_A Transposable element ma 74.4 28 0.00096 27.0 9.7 88 36-130 15-109 (345)
210 3cec_A Putative antidote prote 74.3 6.9 0.00024 25.0 5.2 41 52-122 35-75 (104)
211 3kxa_A NGO0477 protein, putati 74.2 11 0.00036 26.0 6.4 21 104-124 107-127 (141)
212 3fmy_A HTH-type transcriptiona 73.9 8.9 0.00031 22.8 5.3 38 27-71 10-47 (73)
213 3gp4_A Transcriptional regulat 73.9 13 0.00045 25.6 6.8 45 52-96 6-50 (142)
214 3ulq_B Transcriptional regulat 73.2 2.4 8.2E-05 27.0 2.6 48 19-72 21-68 (90)
215 2jml_A DNA binding domain/tran 72.9 9 0.00031 23.5 5.3 66 52-130 9-76 (81)
216 3eus_A DNA-binding protein; st 72.3 10 0.00034 23.3 5.4 31 38-71 20-50 (86)
217 1r8d_A Transcription activator 72.0 10 0.00035 24.7 5.7 65 52-129 6-70 (109)
218 2pmy_A RAS and EF-hand domain- 71.7 2.7 9.3E-05 26.1 2.6 48 24-71 17-69 (91)
219 2ppx_A AGR_C_3184P, uncharacte 71.4 5.8 0.0002 25.2 4.2 20 52-71 47-66 (99)
220 3gpv_A Transcriptional regulat 71.1 8.9 0.0003 26.7 5.4 47 51-97 19-65 (148)
221 2hin_A GP39, repressor protein 70.6 6.4 0.00022 24.0 4.0 38 110-147 13-50 (71)
222 1zug_A Phage 434 CRO protein; 70.2 5.7 0.0002 23.0 3.7 20 52-71 20-39 (71)
223 2o8x_A Probable RNA polymerase 70.1 7.1 0.00024 22.7 4.2 48 86-138 15-62 (70)
224 2rn7_A IS629 ORFA; helix, all 69.8 9.2 0.00031 24.6 5.0 49 25-73 4-55 (108)
225 1p4w_A RCSB; solution structur 69.7 6.6 0.00023 25.4 4.2 42 25-72 32-73 (99)
226 2cqr_A RSGI RUH-043, DNAJ homo 69.4 17 0.00057 22.2 6.5 52 20-71 13-65 (73)
227 3hh0_A Transcriptional regulat 68.4 15 0.00052 25.4 6.1 66 52-130 8-73 (146)
228 1b0n_A Protein (SINR protein); 68.3 10 0.00035 24.2 5.0 20 52-71 18-37 (111)
229 2ef8_A C.ECOT38IS, putative tr 68.3 12 0.0004 22.5 5.0 20 52-71 27-46 (84)
230 2elh_A CG11849-PA, LD40883P; s 68.3 7.9 0.00027 24.1 4.2 42 83-129 19-60 (87)
231 1x3u_A Transcriptional regulat 67.9 12 0.00042 22.2 5.1 38 28-71 17-54 (79)
232 1neq_A DNA-binding protein NER 67.6 11 0.00038 22.8 4.7 19 52-70 26-44 (74)
233 1y9q_A Transcriptional regulat 65.6 11 0.00038 26.9 5.1 42 52-123 28-69 (192)
234 2p7v_B Sigma-70, RNA polymeras 63.8 12 0.0004 21.9 4.2 50 86-136 5-54 (68)
235 2jn6_A Protein CGL2762, transp 63.4 14 0.00047 23.3 4.8 43 85-130 4-46 (97)
236 1ku3_A Sigma factor SIGA; heli 62.8 14 0.00049 21.8 4.6 50 86-136 10-59 (73)
237 1je8_A Nitrate/nitrite respons 62.6 4.1 0.00014 25.1 2.0 44 24-73 18-61 (82)
238 2fjr_A Repressor protein CI; g 61.4 15 0.00051 26.0 5.2 42 50-122 22-63 (189)
239 3c57_A Two component transcrip 61.1 8 0.00027 24.5 3.3 44 26-75 26-69 (95)
240 1s7o_A Hypothetical UPF0122 pr 61.0 17 0.0006 23.9 5.1 48 87-139 23-70 (113)
241 3i5g_B Myosin regulatory light 60.3 37 0.0013 23.1 11.2 107 23-129 5-128 (153)
242 1je8_A Nitrate/nitrite respons 60.3 11 0.00038 23.1 3.7 48 86-139 21-68 (82)
243 3bdn_A Lambda repressor; repre 59.7 6.8 0.00023 29.0 3.1 21 51-71 33-53 (236)
244 1fse_A GERE; helix-turn-helix 59.1 18 0.0006 21.1 4.5 48 84-137 9-56 (74)
245 2l49_A C protein; P2 bacteriop 58.8 8.5 0.00029 24.1 3.1 20 52-71 21-40 (99)
246 1p4w_A RCSB; solution structur 58.4 19 0.00066 23.1 4.8 46 84-135 32-77 (99)
247 4fcy_A Transposase; rnaseh, DD 58.3 79 0.0027 26.2 10.1 103 28-130 23-154 (529)
248 2x48_A CAG38821; archeal virus 58.0 12 0.00039 20.7 3.3 36 30-70 18-53 (55)
249 1fi6_A EH domain protein REPS1 57.7 13 0.00044 23.1 3.8 44 27-70 2-50 (92)
250 2bnm_A Epoxidase; oxidoreducta 57.4 17 0.00057 25.9 4.9 41 52-122 27-68 (198)
251 2cqq_A RSGI RUH-037, DNAJ homo 57.1 30 0.001 20.9 5.4 47 25-71 8-54 (72)
252 2v79_A DNA replication protein 57.0 13 0.00044 25.5 3.9 43 27-72 29-75 (135)
253 3mzy_A RNA polymerase sigma-H 56.8 22 0.00075 23.9 5.2 47 87-139 110-156 (164)
254 3c57_A Two component transcrip 56.5 19 0.00066 22.6 4.5 45 86-136 27-71 (95)
255 1xsv_A Hypothetical UPF0122 pr 56.2 25 0.00085 23.0 5.2 48 87-139 26-73 (113)
256 3u0k_A Rcamp; fluorescent prot 55.7 73 0.0025 26.4 8.8 106 24-129 292-418 (440)
257 3bd1_A CRO protein; transcript 55.7 9 0.00031 23.0 2.7 25 110-134 14-38 (79)
258 2hin_A GP39, repressor protein 55.5 6.7 0.00023 23.9 2.0 21 51-71 13-33 (71)
259 2jvl_A TRMBF1; coactivator, he 55.2 38 0.0013 21.6 9.7 20 52-71 53-72 (107)
260 1tty_A Sigma-A, RNA polymerase 55.2 17 0.00057 22.5 4.0 49 86-137 18-68 (87)
261 2dg6_A Putative transcriptiona 54.7 43 0.0015 25.0 6.8 67 52-131 4-71 (222)
262 1iuf_A Centromere ABP1 protein 53.4 18 0.00062 24.8 4.3 50 81-130 6-59 (144)
263 3dcf_A Transcriptional regulat 52.9 5.5 0.00019 28.2 1.6 41 31-72 35-75 (218)
264 2zhg_A Redox-sensitive transcr 51.9 37 0.0013 23.6 5.8 44 52-96 15-58 (154)
265 2l8n_A Transcriptional repress 51.8 35 0.0012 20.1 4.9 21 51-71 12-32 (67)
266 4ich_A Transcriptional regulat 51.4 2.5 8.6E-05 32.7 -0.6 35 99-134 133-167 (311)
267 3qao_A LMO0526 protein, MERR-l 49.6 40 0.0014 25.5 6.0 45 52-96 7-51 (249)
268 2o38_A Hypothetical protein; a 49.0 20 0.0007 23.8 3.8 20 52-71 57-76 (120)
269 1u78_A TC3 transposase, transp 48.5 44 0.0015 21.9 5.6 45 26-74 59-105 (141)
270 1rzs_A Antirepressor, regulato 48.3 9.2 0.00031 22.1 1.8 19 51-69 13-31 (61)
271 3i5g_C Myosin catalytic light 46.0 68 0.0023 21.8 8.5 102 27-128 2-127 (159)
272 1rp3_A RNA polymerase sigma fa 45.4 32 0.0011 24.8 4.8 48 86-138 187-234 (239)
273 1c07_A Protein (epidermal grow 45.0 18 0.0006 22.6 2.9 43 28-70 4-51 (95)
274 3o9x_A Uncharacterized HTH-typ 44.6 21 0.00071 23.8 3.4 37 28-71 71-107 (133)
275 3fiw_A Putative TETR-family tr 44.3 9.7 0.00033 27.6 1.7 46 26-72 23-69 (211)
276 3qwg_A ESX-1 secretion-associa 44.0 39 0.0013 22.5 4.7 19 104-122 56-74 (123)
277 1or7_A Sigma-24, RNA polymeras 43.4 35 0.0012 23.7 4.7 30 109-138 158-187 (194)
278 1r8e_A Multidrug-efflux transp 43.3 51 0.0018 24.7 5.9 44 52-95 9-53 (278)
279 1j9i_A GPNU1 DBD;, terminase s 42.5 16 0.00054 21.5 2.2 21 51-71 5-25 (68)
280 2jpc_A SSRB; DNA binding prote 42.3 25 0.00085 19.6 3.1 30 110-139 16-45 (61)
281 2lv7_A Calcium-binding protein 41.8 63 0.0022 20.3 5.6 46 84-129 27-79 (100)
282 2yus_A SWI/SNF-related matrix- 41.7 59 0.002 19.9 5.8 50 18-71 11-61 (79)
283 2rnj_A Response regulator prot 41.0 19 0.00067 22.3 2.6 47 86-138 29-75 (91)
284 2pjp_A Selenocysteine-specific 40.3 47 0.0016 21.8 4.6 94 29-129 2-105 (121)
285 2iai_A Putative transcriptiona 39.3 24 0.00083 25.3 3.3 41 31-72 34-74 (230)
286 2vn2_A DNAD, chromosome replic 37.9 48 0.0016 22.0 4.4 43 26-71 28-74 (128)
287 1k78_A Paired box protein PAX5 37.1 92 0.0031 20.8 6.2 44 25-71 88-141 (149)
288 1wj7_A Hypothetical protein (R 36.0 90 0.0031 20.4 5.3 50 20-70 12-62 (104)
289 3pxp_A Helix-turn-helix domain 35.2 81 0.0028 24.5 5.8 48 52-128 29-76 (292)
290 1pdn_C Protein (PRD paired); p 34.9 76 0.0026 20.1 5.0 46 26-71 74-126 (128)
291 2ksn_A Ubiquitin domain-contai 34.8 1.1E+02 0.0037 21.0 6.2 29 25-53 30-60 (137)
292 2q0o_A Probable transcriptiona 34.7 31 0.001 25.4 3.2 44 25-74 173-216 (236)
293 2lfw_A PHYR sigma-like domain; 34.0 39 0.0013 23.1 3.5 47 86-137 93-139 (157)
294 1j7q_A CAVP, calcium vector pr 33.8 73 0.0025 18.6 4.9 45 26-70 6-60 (86)
295 2rgt_A Fusion of LIM/homeobox 33.6 1.5 5.3E-05 31.2 -4.1 30 79-108 135-164 (169)
296 3fym_A Putative uncharacterize 33.6 69 0.0024 21.3 4.7 20 52-71 20-39 (130)
297 2k27_A Paired box protein PAX- 33.2 1.1E+02 0.0039 20.6 6.0 50 25-74 81-137 (159)
298 2ao9_A Phage protein; structur 32.8 32 0.0011 24.3 2.8 47 25-71 21-71 (155)
299 2q24_A Putative TETR family tr 32.8 15 0.00053 25.5 1.2 41 92-134 21-61 (194)
300 2wus_R RODZ, putative uncharac 32.8 96 0.0033 20.1 5.2 49 52-128 24-76 (112)
301 1qgp_A Protein (double strande 32.0 30 0.001 21.0 2.3 41 29-72 12-55 (77)
302 1dtl_A Cardiac troponin C; hel 31.3 86 0.0029 20.5 4.9 46 26-71 10-63 (161)
303 3lsg_A Two-component response 31.1 37 0.0013 21.3 2.8 22 50-71 21-42 (103)
304 2q24_A Putative TETR family tr 31.1 28 0.00096 24.1 2.4 41 30-72 18-58 (194)
305 3dtp_E RLC, myosin regulatory 31.0 1.3E+02 0.0045 20.8 10.8 102 25-129 48-168 (196)
306 2qwt_A Transcriptional regulat 30.8 22 0.00074 24.9 1.7 39 93-133 20-58 (196)
307 2opo_A Polcalcin CHE A 3; calc 30.6 52 0.0018 19.3 3.4 44 27-70 4-53 (86)
308 1iq3_A Ralbp1-interacting prot 30.6 17 0.00057 23.7 1.0 46 25-70 13-63 (110)
309 1dw9_A Cyanate lyase; cyanate 30.4 74 0.0025 22.4 4.4 27 99-125 47-73 (156)
310 3osg_A MYB21; transcription-DN 30.4 1.2E+02 0.0041 20.0 7.5 95 21-128 7-103 (126)
311 1eh2_A EPS15; calcium binding, 30.1 86 0.003 20.0 4.5 44 26-69 7-54 (106)
312 3o9x_A Uncharacterized HTH-typ 29.8 74 0.0025 20.9 4.3 40 87-133 71-110 (133)
313 2ktg_A Calmodulin, putative; e 29.6 64 0.0022 18.8 3.6 45 26-70 6-57 (85)
314 1avs_A Troponin C; muscle cont 29.6 71 0.0024 18.9 3.9 44 27-70 13-63 (90)
315 3i5g_B Myosin regulatory light 29.5 76 0.0026 21.4 4.4 40 83-122 6-50 (153)
316 1qbj_A Protein (double-strande 29.3 55 0.0019 20.1 3.2 34 36-72 15-51 (81)
317 2pij_A Prophage PFL 6 CRO; tra 29.2 42 0.0014 19.0 2.6 21 110-130 16-36 (67)
318 2q0o_A Probable transcriptiona 29.0 66 0.0022 23.6 4.3 48 84-137 173-220 (236)
319 1uxc_A FRUR (1-57), fructose r 28.9 57 0.002 19.0 3.1 21 51-71 3-23 (65)
320 3aqt_A Bacterial regulatory pr 28.8 14 0.00049 27.0 0.5 39 33-72 52-90 (245)
321 3g7r_A Putative transcriptiona 28.7 27 0.00094 24.9 2.0 40 32-72 40-79 (221)
322 1l3l_A Transcriptional activat 28.6 40 0.0014 24.7 3.0 44 25-74 171-214 (234)
323 2hxi_A Putative transcriptiona 28.6 36 0.0012 25.1 2.7 47 25-72 26-73 (241)
324 1l3l_A Transcriptional activat 28.5 85 0.0029 22.9 4.8 47 84-136 171-217 (234)
325 3r1f_A ESX-1 secretion-associa 28.4 91 0.0031 21.0 4.6 19 104-122 58-76 (135)
326 1aih_A HP1 integrase; DNA inte 28.4 1.4E+02 0.0047 20.1 5.8 44 23-66 2-45 (170)
327 2bnk_A Early protein GP16.7; D 28.4 91 0.0031 18.1 4.2 53 87-139 5-57 (67)
328 2d1h_A ST1889, 109AA long hypo 28.1 74 0.0025 19.5 3.9 42 27-71 18-59 (109)
329 2e6o_A HMG box-containing prot 28.0 1.1E+02 0.0036 18.7 4.9 63 7-69 4-68 (87)
330 2joj_A Centrin protein; N-term 27.4 52 0.0018 18.7 2.9 43 28-70 1-50 (77)
331 2qwt_A Transcriptional regulat 27.4 39 0.0013 23.5 2.6 39 32-72 18-56 (196)
332 2pz9_A Putative regulatory pro 27.2 12 0.00043 26.9 -0.1 42 30-72 33-74 (226)
333 3bru_A Regulatory protein, TET 26.7 26 0.0009 24.7 1.6 40 32-72 35-74 (222)
334 2v57_A TETR family transcripti 26.7 27 0.00091 24.0 1.6 35 97-134 25-59 (190)
335 1wgx_A KIAA1903 protein; MYB D 26.4 1E+02 0.0036 18.6 4.0 45 27-71 10-55 (73)
336 2rek_A Putative TETR-family tr 25.3 20 0.0007 24.9 0.8 39 93-133 23-61 (199)
337 2hxi_A Putative transcriptiona 24.9 42 0.0014 24.7 2.5 50 86-136 28-78 (241)
338 3t72_q RNA polymerase sigma fa 24.8 1.4E+02 0.0047 18.9 5.8 54 87-141 20-73 (99)
339 3fwb_A Cell division control p 24.7 1.5E+02 0.005 19.2 5.3 107 22-128 11-138 (161)
340 4h62_V Mediator of RNA polymer 24.5 56 0.0019 15.7 2.0 15 26-40 7-21 (31)
341 3g1o_A Transcriptional regulat 24.4 20 0.00068 26.3 0.6 39 33-72 49-87 (255)
342 1xwr_A Regulatory protein CII; 24.3 51 0.0018 21.2 2.5 21 109-129 25-45 (97)
343 3j04_B Myosin regulatory light 24.3 1.4E+02 0.0049 18.9 9.1 99 28-128 1-118 (143)
344 1t33_A Putative transcriptiona 24.1 30 0.001 24.5 1.4 39 95-135 21-59 (224)
345 2jt1_A PEFI protein; solution 23.8 61 0.0021 19.7 2.7 34 35-71 12-47 (77)
346 2lhi_A Calmodulin, serine/thre 23.6 1E+02 0.0034 21.3 4.2 39 84-122 2-45 (176)
347 4aci_A HTH-type transcriptiona 23.5 50 0.0017 22.5 2.6 25 109-133 36-60 (191)
348 2jj7_A Hemolysin II regulatory 23.3 50 0.0017 22.4 2.5 27 109-135 29-55 (186)
349 3q0w_A HTH-type transcriptiona 23.2 18 0.00061 26.2 0.1 39 33-72 50-88 (236)
350 3dew_A Transcriptional regulat 23.1 47 0.0016 22.7 2.4 27 109-135 30-56 (206)
351 2kgr_A Intersectin-1; structur 22.7 87 0.003 20.0 3.5 42 26-67 6-52 (111)
352 3pas_A TETR family transcripti 22.7 44 0.0015 22.7 2.1 26 109-134 30-55 (195)
353 3qp6_A CVIR transcriptional re 22.6 85 0.0029 23.6 3.9 53 17-75 187-239 (265)
354 1w8x_P Protein P16, protein S, 22.6 29 0.001 21.9 1.0 12 122-133 17-28 (117)
355 3loc_A HTH-type transcriptiona 22.5 45 0.0015 23.1 2.2 25 109-133 40-64 (212)
356 3jsj_A Putative TETR-family tr 22.4 31 0.0011 23.7 1.2 38 92-131 15-52 (190)
357 3i9v_2 NADH-quinone oxidoreduc 22.4 1E+02 0.0035 22.0 4.0 36 31-66 26-61 (181)
358 3clo_A Transcriptional regulat 22.3 1.1E+02 0.0037 22.8 4.4 50 85-140 196-245 (258)
359 2np3_A Putative TETR-family re 22.2 21 0.00072 25.2 0.3 40 32-72 35-74 (212)
360 3bqz_B HTH-type transcriptiona 21.7 52 0.0018 22.4 2.3 25 109-133 24-48 (194)
361 3c3w_A Two component transcrip 21.7 52 0.0018 23.6 2.4 44 26-75 148-191 (225)
362 3vpr_A Transcriptional regulat 21.6 58 0.002 22.3 2.6 37 98-135 15-51 (190)
363 2kvr_A Ubiquitin carboxyl-term 21.6 35 0.0012 23.2 1.3 23 51-73 72-94 (130)
364 3gzi_A Transcriptional regulat 21.5 57 0.002 22.7 2.6 38 96-134 27-64 (218)
365 2zcm_A Biofilm operon icaabcd 21.2 52 0.0018 22.5 2.3 40 95-135 16-55 (192)
366 3fia_A Intersectin-1; EH 1 dom 21.1 1.8E+02 0.006 19.3 4.8 47 23-69 22-73 (121)
367 2hku_A A putative transcriptio 21.1 59 0.002 22.7 2.6 36 97-134 31-66 (215)
368 2q1z_A RPOE, ECF SIGE; ECF sig 21.0 22 0.00074 24.7 0.1 26 112-137 156-181 (184)
369 3on4_A Transcriptional regulat 21.0 52 0.0018 22.3 2.2 26 109-134 32-57 (191)
370 2d6y_A Putative TETR family re 20.9 60 0.0021 22.6 2.6 38 97-135 19-56 (202)
371 2lmt_A Calmodulin-related prot 20.9 1.8E+02 0.0062 18.9 7.1 102 27-128 3-125 (148)
372 1irz_A ARR10-B; helix-turn-hel 20.9 1.4E+02 0.0047 17.6 3.7 58 80-137 3-62 (64)
373 2rek_A Putative TETR-family tr 20.8 36 0.0012 23.5 1.3 39 32-72 21-59 (199)
374 3i9v_2 NADH-quinone oxidoreduc 20.8 73 0.0025 22.8 3.0 35 90-124 26-60 (181)
375 3mn2_A Probable ARAC family tr 20.7 82 0.0028 19.7 3.0 21 51-71 21-41 (108)
376 1a04_A Nitrate/nitrite respons 20.7 74 0.0025 22.3 3.1 44 26-75 153-196 (215)
377 1etf_B REV peptide; complex (R 20.7 82 0.0028 15.1 2.1 14 129-142 7-20 (26)
378 2hyt_A TETR-family transcripti 20.5 63 0.0022 22.3 2.6 37 96-133 22-58 (197)
379 2fq4_A Transcriptional regulat 20.5 53 0.0018 22.6 2.2 36 99-135 25-60 (192)
380 1xn7_A Hypothetical protein YH 20.4 1.4E+02 0.0048 18.1 3.8 30 35-67 6-35 (78)
381 3rmq_A Uncharacterized protein 20.4 34 0.0012 22.7 1.0 40 23-66 67-106 (116)
382 3bni_A Putative TETR-family tr 20.3 72 0.0025 22.7 2.9 39 33-72 49-87 (229)
383 2xdn_A HTH-type transcriptiona 20.3 54 0.0018 22.9 2.2 38 96-134 21-58 (210)
384 2wui_A MEXZ, transcriptional r 20.2 53 0.0018 23.0 2.1 40 97-137 22-61 (210)
385 2eo2_A Adult MALE hypothalamus 20.1 1.2E+02 0.0041 18.3 3.3 44 22-65 23-68 (71)
386 2np5_A Transcriptional regulat 20.1 55 0.0019 22.8 2.2 39 96-135 19-57 (203)
387 3vib_A MTRR; helix-turn-helix 20.1 53 0.0018 22.9 2.1 39 97-136 21-59 (210)
388 3ppb_A Putative TETR family tr 20.1 55 0.0019 22.1 2.2 40 94-134 17-56 (195)
389 2gfn_A HTH-type transcriptiona 20.0 57 0.0019 22.9 2.3 36 98-134 21-56 (209)
390 2p5t_A Putative transcriptiona 20.0 22 0.00075 24.5 0.0 22 50-71 16-37 (158)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=123.31 Aligned_cols=75 Identities=31% Similarity=0.333 Sum_probs=64.9
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 6 VNSSSSTLEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 6 ~~~s~~~~~~~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
.+++........+.+.++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..
T Consensus 7 ~~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 7 AENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCCSSCCCSCCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 333344444556678889999999999999999999999999999999999999999999999999999877644
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=121.76 Aligned_cols=68 Identities=32% Similarity=0.395 Sum_probs=61.4
Q ss_pred cccCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 13 LEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 13 ~~~~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
.+.....+.++.|+.||.+|+.+||..|..++||+..++..||..|||++.+|++||+|||++.++..
T Consensus 9 ~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 9 EPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CSCCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34445678889999999999999999999999999999999999999999999999999999876543
No 3
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.82 E-value=4.7e-20 Score=120.26 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=58.8
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 15 WTGQVTVRKKRKPYSKHQTLELEKEFLY----NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 15 ~~~~~~~rr~r~~ft~~Ql~~Le~~F~~----~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
.....+.+|.||.||.+|+.+|+..|+. ++||+..++++||..|||++.+|++||+|+|+|.+.
T Consensus 11 ~~~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 11 EAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3445678899999999999999999999 999999999999999999999999999999998653
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=7.6e-20 Score=119.11 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=58.2
Q ss_pred ccCCCCCCCCCCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 14 EWTGQVTVRKKRKPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 14 ~~~~~~~~rr~r~~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
......+.+|.||.||.+|+.+|+ .|.. ++||+..++++||..|||++.+|++||+|||++.+.
T Consensus 10 ~~~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 10 PSSSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 344556788999999999999999 7999 999999999999999999999999999999998653
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=5.3e-20 Score=120.20 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=60.6
Q ss_pred ccCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 14 EWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 14 ~~~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
....+.+.++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 10 GGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3445577889999999999999999999999999999999999999999999999999998876543
No 6
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1.3e-19 Score=122.61 Aligned_cols=84 Identities=38% Similarity=0.553 Sum_probs=64.7
Q ss_pred HcCCChhhhhhhhhhcccccc---------ccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHH
Q psy10486 57 SLMLTERQVKIWFQNIEWTGQ---------VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIW 127 (183)
Q Consensus 57 ~l~l~~~qV~~WF~nrr~k~~---------~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~W 127 (183)
.++++..+|..||++.|...+ ...++.|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++|
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vW 81 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIW 81 (97)
T ss_dssp ------CCCCGGGGC--------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHH
Confidence 357788889999999775432 24456789999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHh
Q psy10486 128 FQNRRMKNKKNTQ 140 (183)
Q Consensus 128 F~nrR~k~rk~~~ 140 (183)
|+|||+|+|+..+
T Consensus 82 FqNRR~k~kk~~~ 94 (97)
T 1b72_A 82 FQNRRMKQKKRER 94 (97)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHhHHHhHHhc
Confidence 9999999999865
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=2.4e-19 Score=114.15 Aligned_cols=63 Identities=41% Similarity=0.626 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
..+.+++|+.||..|+.+||..|..++||+..++..||..|||++.+|++||+|||++.++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 357789999999999999999999999999999999999999999999999999999876543
No 8
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=113.18 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 17 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 17 ~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
...+.++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.++..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 3457789999999999999999999999999999999999999999999999999999876543
No 9
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-19 Score=112.74 Aligned_cols=63 Identities=40% Similarity=0.470 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
..+.++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 357789999999999999999999999999999999999999999999999999999876543
No 10
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=3.8e-19 Score=110.57 Aligned_cols=59 Identities=36% Similarity=0.451 Sum_probs=51.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 20 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
+.++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||+|+|++.++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 46788999999999999999999999999999999999999999999999999998765
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=112.64 Aligned_cols=61 Identities=28% Similarity=0.409 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 19 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 19 ~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
...++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 4678899999999999999999999999999999999999999999999999999887653
No 12
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.77 E-value=3.4e-19 Score=110.41 Aligned_cols=59 Identities=32% Similarity=0.542 Sum_probs=51.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 20 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
..++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 45789999999999999999999999999999999999999999999999999987653
No 13
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-19 Score=113.02 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
..+.++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.++..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 357789999999999999999999999999999999999999999999999999999876543
No 14
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.77 E-value=6.8e-19 Score=114.08 Aligned_cols=65 Identities=57% Similarity=0.856 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 16 TGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 16 ~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
....+.++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||+|||++.++..
T Consensus 8 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 8 LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 34467788999999999999999999999999999999999999999999999999999876543
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=5.5e-19 Score=108.37 Aligned_cols=56 Identities=46% Similarity=0.695 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccc
Q psy10486 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQ 77 (183)
Q Consensus 22 rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~ 77 (183)
+++|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 56 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhc
Confidence 57899999999999999999999999999999999999999999999999998764
No 16
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.76 E-value=1.1e-18 Score=112.01 Aligned_cols=65 Identities=42% Similarity=0.649 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVRK 82 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr 82 (183)
..+.++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||+|||++.++...+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 35678999999999999999999999999999999999999999999999999999987765443
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.76 E-value=4.9e-19 Score=110.41 Aligned_cols=59 Identities=49% Similarity=0.789 Sum_probs=53.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 20 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
..++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhh
Confidence 46789999999999999999999999999999999999999999999999999988654
No 18
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=7.7e-19 Score=110.52 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 20 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
+.++.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|+|++.++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 568899999999999999999999999999999999999999999999999999987653
No 19
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=8.9e-19 Score=114.35 Aligned_cols=63 Identities=25% Similarity=0.350 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 19 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 19 ~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
.+.++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 577899999999999999999999999999999999999999999999999999998766544
No 20
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.76 E-value=8.9e-19 Score=113.53 Aligned_cols=63 Identities=40% Similarity=0.536 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 17 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 17 ~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
.+.+.++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++.
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 446778899999999999999999999999999999999999999999999999999987653
No 21
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=2.9e-18 Score=111.89 Aligned_cols=70 Identities=27% Similarity=0.474 Sum_probs=63.9
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhHHHHHhcC
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQRQAAQASN 148 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~~~~~~~~ 148 (183)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+........
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~~~s 75 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQS 75 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhccCCC
Confidence 4567789999999999999999999999999999999999999999999999999999999777655443
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.76 E-value=6.3e-19 Score=115.33 Aligned_cols=63 Identities=32% Similarity=0.392 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 17 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 17 ~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
...+.++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++.
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 456788999999999999999999999999999999999999999999999999999886653
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.1e-18 Score=110.99 Aligned_cols=62 Identities=39% Similarity=0.507 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 19 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 19 ~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
...++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 46678899999999999999999999999999999999999999999999999998876543
No 24
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=9.2e-19 Score=114.28 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 19 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 19 ~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
.+.++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||+|||++.++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999876543
No 25
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=9.7e-19 Score=110.69 Aligned_cols=62 Identities=31% Similarity=0.523 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 20 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
+.++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++...
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999999999999998765443
No 26
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=113.32 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 19 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 19 ~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
.+.++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999876644
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=1.1e-18 Score=107.81 Aligned_cols=57 Identities=40% Similarity=0.658 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 22 rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 688999999999999999999999999999999999999999999999999987654
No 28
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.74 E-value=1.6e-18 Score=113.34 Aligned_cols=62 Identities=47% Similarity=0.709 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
....++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||+|||++.++.
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 35678899999999999999999999999999999999999999999999999999986653
No 29
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.74 E-value=1.3e-18 Score=107.78 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=47.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccc
Q psy10486 19 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTG 76 (183)
Q Consensus 19 ~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~ 76 (183)
.+.++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~ 60 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 4678889999999999999999999999999999999999999999999999999864
No 30
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=2.9e-18 Score=114.95 Aligned_cols=66 Identities=33% Similarity=0.467 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 16 TGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 16 ~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
..+.+.++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++...
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 345677889999999999999999999999999999999999999999999999999998776443
No 31
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.74 E-value=1.4e-18 Score=115.36 Aligned_cols=63 Identities=44% Similarity=0.754 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 17 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 17 ~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
...+.++.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||+|||++.++.
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 345678999999999999999999999999999999999999999999999999999987653
No 32
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-18 Score=110.32 Aligned_cols=64 Identities=33% Similarity=0.381 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
..+.++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.++..+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999999999999999999999998776544
No 33
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.74 E-value=1.4e-18 Score=109.97 Aligned_cols=61 Identities=46% Similarity=0.775 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 21 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 21 ~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
.++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4688999999999999999999999999999999999999999999999999998776543
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=105.38 Aligned_cols=56 Identities=45% Similarity=0.630 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccc
Q psy10486 21 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTG 76 (183)
Q Consensus 21 ~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~ 76 (183)
.++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 46789999999999999999999999999999999999999999999999999864
No 35
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=2.1e-18 Score=109.12 Aligned_cols=61 Identities=39% Similarity=0.576 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 21 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 21 ~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
.++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4788999999999999999999999999999999999999999999999999998766443
No 36
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=3.8e-18 Score=105.37 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCChhhhhhhhhhcccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLY-NAYVSKQKRWELARSLMLTERQVKIWFQNIEWT 75 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k 75 (183)
....+|.||.|+.+||.+|+..|+. ++||+.+.++.||..|||++++|++||||+|.-
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 4578899999999999999999999 999999999999999999999999999998864
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=108.74 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=56.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 21 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 21 ~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
.++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.++..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 478899999999999999999999999999999999999999999999999999876544
No 38
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.74 E-value=3.2e-18 Score=106.66 Aligned_cols=60 Identities=58% Similarity=0.921 Sum_probs=56.0
Q ss_pred ccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
.++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 456789999999999999999999999999999999999999999999999999999864
No 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=109.80 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 23 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 23 r~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
++|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 56778999999999999999999999999999999999999999999999998766544
No 40
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.74 E-value=8e-19 Score=111.07 Aligned_cols=62 Identities=29% Similarity=0.415 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 20 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
+.++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|+|++.++..+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 56889999999999999999999999999999999999999999999999999998765443
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=2.1e-18 Score=106.46 Aligned_cols=56 Identities=32% Similarity=0.411 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 24 KRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 24 ~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 58999999999999999999999999999999999999999999999999987653
No 42
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=4.7e-18 Score=104.18 Aligned_cols=57 Identities=53% Similarity=0.805 Sum_probs=54.6
Q ss_pred cccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356889999999999999999999999999999999999999999999999999987
No 43
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=112.15 Aligned_cols=64 Identities=30% Similarity=0.460 Sum_probs=59.5
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQRQ 142 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~~ 142 (183)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|++...+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999987543
No 44
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=7.2e-18 Score=106.65 Aligned_cols=62 Identities=35% Similarity=0.632 Sum_probs=58.4
Q ss_pred ccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhH
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQR 141 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~ 141 (183)
.++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 45678999999999999999999999999999999999999999999999999999998754
No 45
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.8e-18 Score=112.93 Aligned_cols=64 Identities=31% Similarity=0.483 Sum_probs=59.7
Q ss_pred ccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhH
Q psy10486 78 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQR 141 (183)
Q Consensus 78 ~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~ 141 (183)
...++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 3466789999999999999999999999999999999999999999999999999999997754
No 46
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.73 E-value=4.1e-18 Score=105.50 Aligned_cols=58 Identities=40% Similarity=0.682 Sum_probs=53.0
Q ss_pred ccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
.++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4677899999999999999999999999999999999999999999999999999986
No 47
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-18 Score=113.43 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLYN----AYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~~----~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
..+.++.|+.||.+|+.+|+..|..+ +||+..++.+||..|||++.+|++||+|+|++.++
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 46788999999999999999999999 99999999999999999999999999999988765
No 48
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4.5e-18 Score=108.87 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=52.8
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 23 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 23 r~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
..|+.||.+|+.+|++.|..++||+..++++||..+||++.+|++||+|+|++.++.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999886543
No 49
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.73 E-value=2.5e-18 Score=106.86 Aligned_cols=59 Identities=41% Similarity=0.545 Sum_probs=52.9
Q ss_pred ccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
.++.++.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 45678999999999999999999999999999999999999999999999999999985
No 50
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=115.20 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 17 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 17 ~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
.....+++|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 82 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 82 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhh
Confidence 34566788999999999999999999999999999999999999999999999999988665
No 51
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.72 E-value=1.2e-17 Score=108.18 Aligned_cols=63 Identities=68% Similarity=1.063 Sum_probs=59.3
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQR 141 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~ 141 (183)
..++.++.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++|+..+.
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 456778999999999999999999999999999999999999999999999999999998764
No 52
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.72 E-value=6.1e-18 Score=104.39 Aligned_cols=58 Identities=48% Similarity=0.812 Sum_probs=55.1
Q ss_pred cccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+++|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678999999999999999999999999999999999999999999999999999874
No 53
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=108.06 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=55.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 21 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 21 ~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
..+.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..+
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 3445899999999999999999999999999999999999999999999999998776443
No 54
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=2.7e-18 Score=113.60 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=57.8
Q ss_pred cCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhHHHHHhc
Q psy10486 83 KRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQRQAAQAS 147 (183)
Q Consensus 83 ~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~~~~~~~ 147 (183)
+...++..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+|++++.+.......
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~~~~ 78 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDES 78 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCCCCC
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhhcccC
Confidence 34489999999999999999999999999999999999999999999999999987765543333
No 55
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=1.3e-17 Score=107.97 Aligned_cols=64 Identities=44% Similarity=0.625 Sum_probs=59.2
Q ss_pred ccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhH
Q psy10486 78 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQR 141 (183)
Q Consensus 78 ~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~ 141 (183)
...++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+....
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 3456678899999999999999999999999999999999999999999999999999987654
No 56
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=9.3e-18 Score=107.42 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=54.6
Q ss_pred ccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 82 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 82 r~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..+..||.+|+.+|+..|..++||+..++++||..+||++.+|++||+|+|+++|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 3466799999999999999999999999999999999999999999999999999864
No 57
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.72 E-value=6.3e-18 Score=104.30 Aligned_cols=58 Identities=38% Similarity=0.546 Sum_probs=50.6
Q ss_pred cCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 83 KRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 83 ~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
+|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4688999999999999999999999999999999999999999999999999998764
No 58
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=9.4e-18 Score=102.09 Aligned_cols=54 Identities=44% Similarity=0.768 Sum_probs=51.0
Q ss_pred CCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 85 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 85 ~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 468999999999999999999999999999999999999999999999999986
No 59
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=106.55 Aligned_cols=62 Identities=32% Similarity=0.524 Sum_probs=58.0
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
..++.++.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 45677899999999999999999999999999999999999999999999999999998653
No 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=3.9e-18 Score=115.24 Aligned_cols=64 Identities=41% Similarity=0.596 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 17 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 17 ~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
+....++.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..
T Consensus 30 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 30 GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 4467788999999999999999999999999999999999999999999999999999876543
No 61
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.72 E-value=8e-18 Score=106.43 Aligned_cols=61 Identities=44% Similarity=0.650 Sum_probs=57.6
Q ss_pred ccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
.++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 3567899999999999999999999999999999999999999999999999999998764
No 62
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=7e-18 Score=107.90 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 22 RKKRKPYSKHQTLELEKEFLY-NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 22 rr~r~~ft~~Ql~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
.+.|+.||..|+.+|+..|.. ++||+..++..||..|||++.+|++||+|||++.++...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 578899999999999999996 999999999999999999999999999999998766443
No 63
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=110.66 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
..||.+||.+|+..|..++||+..++..||..|||++.+|++||+|||++.++...
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 44999999999999999999999999999999999999999999999988765443
No 64
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.71 E-value=5.7e-18 Score=107.09 Aligned_cols=61 Identities=56% Similarity=0.934 Sum_probs=57.5
Q ss_pred ccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
.++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 3567899999999999999999999999999999999999999999999999999999764
No 65
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=106.67 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 20 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
..++.|+.||.+|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++...
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 45788999999999999999999999999999999999999999999999999998776443
No 66
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=1.5e-17 Score=108.75 Aligned_cols=63 Identities=37% Similarity=0.539 Sum_probs=58.7
Q ss_pred ccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 78 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 78 ~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
...++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 345677899999999999999999999999999999999999999999999999999999864
No 67
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=6.5e-18 Score=107.47 Aligned_cols=61 Identities=51% Similarity=0.813 Sum_probs=57.5
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 4567789999999999999999999999999999999999999999999999999999864
No 68
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.5e-18 Score=109.65 Aligned_cols=62 Identities=44% Similarity=0.618 Sum_probs=58.0
Q ss_pred ccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 78 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 78 ~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
...++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 34567789999999999999999999999999999999999999999999999999999864
No 69
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=8.4e-18 Score=107.80 Aligned_cols=61 Identities=20% Similarity=0.093 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 21 VRKKRKPYSKHQTLELEKEFLY-NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 21 ~rr~r~~ft~~Ql~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
..+.|+.||.+|+.+|+..|.. ++||+..++..||..|||++.+|++||+|||++.++..+
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 3577899999999999999995 999999999999999999999999999999998766543
No 70
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.71 E-value=6.1e-18 Score=124.20 Aligned_cols=62 Identities=24% Similarity=0.378 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 17 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 17 ~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
+..+.+|.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++
T Consensus 97 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 97 GLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 34578899999999999999999999999999999999999999999999999999998664
No 71
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1e-17 Score=104.70 Aligned_cols=59 Identities=29% Similarity=0.321 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 20 TVRKKRKPYSKHQTLELEKEF---LYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
..++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|++.++
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 467889999999999999999 99999999999999999999999999999999987653
No 72
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.5e-17 Score=105.74 Aligned_cols=61 Identities=44% Similarity=0.659 Sum_probs=57.3
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3456788999999999999999999999999999999999999999999999999999875
No 73
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.71 E-value=7.1e-18 Score=102.64 Aligned_cols=53 Identities=40% Similarity=0.630 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
|.||.+|+.+|+..|..++||+..++..||..+||++.+|++||+|||++.++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 68999999999999999999999999999999999999999999999987654
No 74
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=2.2e-17 Score=105.52 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=55.5
Q ss_pred ccCCCCChhHHHHHHHcccc-CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 82 KKRKPYSKHQTLELEKEFLY-NAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 82 r~r~~~t~~q~~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
+.++.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 56889999999999999996 99999999999999999999999999999999999976
No 75
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=101.51 Aligned_cols=57 Identities=51% Similarity=0.700 Sum_probs=54.0
Q ss_pred ccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHH
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~r 136 (183)
.++.++.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 356789999999999999999999999999999999999999999999999999975
No 76
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=106.17 Aligned_cols=61 Identities=31% Similarity=0.425 Sum_probs=57.5
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 4567789999999999999999999999999999999999999999999999999999864
No 77
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.70 E-value=6.2e-18 Score=106.94 Aligned_cols=62 Identities=35% Similarity=0.537 Sum_probs=58.5
Q ss_pred ccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhH
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQR 141 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~ 141 (183)
.++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 45678999999999999999999999999999999999999999999999999999998754
No 78
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=2.3e-17 Score=105.71 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=56.0
Q ss_pred cccCCCCChhHHHHHHHcccc-CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 81 RKKRKPYSKHQTLELEKEFLY-NAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
.+.++.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456889999999999999995 99999999999999999999999999999999999977
No 79
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=108.58 Aligned_cols=62 Identities=23% Similarity=0.389 Sum_probs=58.0
Q ss_pred ccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 78 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 78 ~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
...++.|+.|+.+|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++|+..
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34567789999999999999999999999999999999999999999999999999999864
No 80
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=2e-17 Score=106.05 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
..+.++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|++.++
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 67 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 67 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccc
Confidence 3567888999999999999999987 999999999999999999999999999999987654
No 81
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=106.35 Aligned_cols=61 Identities=48% Similarity=0.627 Sum_probs=57.4
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 4567789999999999999999999999999999999999999999999999999998754
No 82
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=1.1e-17 Score=112.11 Aligned_cols=66 Identities=39% Similarity=0.620 Sum_probs=60.2
Q ss_pred ccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhHHH
Q psy10486 78 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQRQA 143 (183)
Q Consensus 78 ~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~~~ 143 (183)
...++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+......
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999875443
No 83
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=1.2e-17 Score=105.05 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=56.7
Q ss_pred ccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
.++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 467789999999999999999999999999999999999999999999999999998754
No 84
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.70 E-value=1.3e-17 Score=103.28 Aligned_cols=58 Identities=28% Similarity=0.428 Sum_probs=48.4
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~r 136 (183)
..++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|+|+++|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4567789999999999999999999999999999999999999999999999999875
No 85
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=106.09 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=57.6
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4567789999999999999999999999999999999999999999999999999999864
No 86
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.70 E-value=1.9e-17 Score=106.08 Aligned_cols=61 Identities=51% Similarity=0.782 Sum_probs=57.7
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 4567789999999999999999999999999999999999999999999999999999864
No 87
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=103.73 Aligned_cols=60 Identities=35% Similarity=0.544 Sum_probs=56.7
Q ss_pred cccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
++.++.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 567899999999999999999999999999999999999999999999999999998653
No 88
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.70 E-value=1.5e-17 Score=108.76 Aligned_cols=62 Identities=58% Similarity=0.888 Sum_probs=54.6
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
..++.|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+|+|++.+
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 45677899999999999999999999999999999999999999999999999999998653
No 89
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=107.92 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=57.8
Q ss_pred ccccccCCCCChhHHHHHHHccccC----CccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 78 VTVRKKRKPYSKHQTLELEKEFLYN----AYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 78 ~~~rr~r~~~t~~q~~~Le~~F~~~----~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
...++.|+.|+..|+.+|+..|..+ +||+..++.+||..+||++.+|++||+|||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 3456778999999999999999999 9999999999999999999999999999999999853
No 90
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.69 E-value=2.3e-17 Score=105.76 Aligned_cols=60 Identities=33% Similarity=0.469 Sum_probs=55.7
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 21 VRKKRKPYSKHQTLELEKEF---LYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 21 ~rr~r~~ft~~Ql~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
.++.|+.||..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|++.++..
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 47889999999999999999 9999999999999999999999999999999998876543
No 91
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=9.1e-18 Score=110.51 Aligned_cols=63 Identities=40% Similarity=0.547 Sum_probs=58.5
Q ss_pred ccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 78 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 78 ~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
...++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+..+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 355677899999999999999999999999999999999999999999999999999998653
No 92
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.6e-17 Score=111.73 Aligned_cols=65 Identities=25% Similarity=0.222 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------CChhhhhhhhhhccccccccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLM---------------LTERQVKIWFQNIEWTGQVTVRK 82 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~---------------l~~~qV~~WF~nrr~k~~~~~rr 82 (183)
..+.++.|+.|+..|+.+||..|..++||+..+++.||..|| |++.+|++||+|||++.++..+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 357789999999999999999999999999999999999999 99999999999999987765443
No 93
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=4.3e-17 Score=107.80 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~r 81 (183)
..||.+||.+||..|..++||+..++.+||..|||++.||++||+|||++.++...
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 38999999999999999999999999999999999999999999999988765443
No 94
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.69 E-value=2e-17 Score=109.81 Aligned_cols=61 Identities=56% Similarity=0.940 Sum_probs=55.2
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++.|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++|+..
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4567789999999999999999999999999999999999999999999999999999864
No 95
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.69 E-value=1.8e-17 Score=122.05 Aligned_cols=66 Identities=29% Similarity=0.271 Sum_probs=50.6
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 15 WTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 15 ~~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
...+.+.+|.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++..
T Consensus 93 ~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 93 IAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp -------------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 345677889999999999999999999999999999999999999999999999999999876644
No 96
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.69 E-value=2.9e-17 Score=101.32 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=51.7
Q ss_pred CCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 24 KRKPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 24 ~r~~ft~~Ql~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
+|+.||.+|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|++.++
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3689999999999999999 999999999999999999999999999999987653
No 97
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.68 E-value=1.6e-17 Score=120.21 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=54.1
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 15 WTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 15 ~~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
.....+.+|.|+.||..|+.+||..|..++||+..++..||..|||++.+|++||+|||++.++
T Consensus 81 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 81 VGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp --------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred cCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 3445677889999999999999999999999999999999999999999999999999988764
No 98
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=105.97 Aligned_cols=60 Identities=25% Similarity=0.320 Sum_probs=56.2
Q ss_pred cccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
++++..+|..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|++..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 456778999999999999999999999999999999999999999999999999998764
No 99
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=1.7e-17 Score=108.08 Aligned_cols=59 Identities=8% Similarity=0.156 Sum_probs=55.6
Q ss_pred cccccCCCCChhHHHHHHHcccc----CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLY----NAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~----~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
..++.|+.|+..|+..|+..|.. ++||+..++++||..|||++.+|++||+|||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 45677899999999999999999 999999999999999999999999999999999874
No 100
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.68 E-value=6e-17 Score=100.26 Aligned_cols=53 Identities=21% Similarity=0.436 Sum_probs=50.5
Q ss_pred CChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 87 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 87 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
-+.+|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 101
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=4.8e-17 Score=104.76 Aligned_cols=62 Identities=39% Similarity=0.526 Sum_probs=58.2
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
..++.++.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++|+..+
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999998654
No 102
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=5.6e-17 Score=107.39 Aligned_cols=60 Identities=33% Similarity=0.469 Sum_probs=54.7
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 21 VRKKRKPYSKHQTLELEKEF---LYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 21 ~rr~r~~ft~~Ql~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
.+|.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|++.++..
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 36889999999999999999 8999999999999999999999999999999998876544
No 103
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=6.8e-17 Score=106.99 Aligned_cols=67 Identities=37% Similarity=0.563 Sum_probs=59.7
Q ss_pred cccCCCCChhHHHHHHHcc---ccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhHHHHHhc
Q psy10486 81 RKKRKPYSKHQTLELEKEF---LYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQRQAAQAS 147 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~~~~~~~ 147 (183)
++.++.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+..........
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~~~~ 71 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEAN 71 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccccccc
Confidence 4678899999999999999 899999999999999999999999999999999999998755444433
No 104
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=105.12 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 19 VTVRKKRKPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 19 ~~~rr~r~~ft~~Ql~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
.+.++.|+.|+.+|+.+|+..|.. ++||+..++..||..+||+..||.+||+|+|++.++.
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 467888999999999999999988 5999999999999999999999999999999886543
No 105
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=5.1e-17 Score=104.39 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=56.7
Q ss_pred ccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
.+..|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++|+..
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 356688999999999999999999999999999999999999999999999999999865
No 106
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.66 E-value=9.4e-17 Score=106.30 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQ 77 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~ 77 (183)
..+.++.|+.|+.+|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|++.+
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 3456677999999999999999999 99999999999999999999999999999998754
No 107
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.66 E-value=7e-17 Score=109.04 Aligned_cols=64 Identities=22% Similarity=0.192 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH------------------cC---CChhhhhhhhhhcccc
Q psy10486 17 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARS------------------LM---LTERQVKIWFQNIEWT 75 (183)
Q Consensus 17 ~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~------------------l~---l~~~qV~~WF~nrr~k 75 (183)
...+.+|.|+.|+..|+.+||..|..++||+..++++||.. || |++.+|++||+|||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34577899999999999999999999999999999999999 88 9999999999999997
Q ss_pred ccccc
Q psy10486 76 GQVTV 80 (183)
Q Consensus 76 ~~~~~ 80 (183)
.+...
T Consensus 85 ~k~k~ 89 (99)
T 1lfb_A 85 EAFRH 89 (99)
T ss_dssp TSCCC
T ss_pred HHHhc
Confidence 65433
No 108
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.66 E-value=6.4e-17 Score=103.67 Aligned_cols=61 Identities=39% Similarity=0.607 Sum_probs=57.2
Q ss_pred cccCCCCChhHHHHHHHcc---ccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhH
Q psy10486 81 RKKRKPYSKHQTLELEKEF---LYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQR 141 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~ 141 (183)
++.++.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 4678899999999999999 999999999999999999999999999999999999987644
No 109
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=8.8e-17 Score=108.25 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHc---------------------CCChhhhhhhhhhccccc
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSL---------------------MLTERQVKIWFQNIEWTG 76 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l---------------------~l~~~qV~~WF~nrr~k~ 76 (183)
..+.+|.|+.|+..|+.+|+..|+.++||+..++++||..| +|++.+|++||+|||++.
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35788999999999999999999999999999999999999 799999999999999876
Q ss_pred ccc
Q psy10486 77 QVT 79 (183)
Q Consensus 77 ~~~ 79 (183)
++.
T Consensus 83 kr~ 85 (102)
T 2da6_A 83 AFR 85 (102)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 110
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.66 E-value=1.1e-16 Score=98.60 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=52.6
Q ss_pred CCCCChhHHHHHHHcccc---CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 84 RKPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 84 r~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
++.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 578999999999999999 9999999999999999999999999999999999863
No 111
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.66 E-value=5.6e-17 Score=118.01 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 16 TGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 16 ~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
..+.+.+|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++
T Consensus 88 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 88 GEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 445678889999999999999999999999999999999999999999999999999988664
No 112
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=7.8e-17 Score=100.64 Aligned_cols=58 Identities=34% Similarity=0.464 Sum_probs=54.8
Q ss_pred ccccCCCCChhHHHHHHHcc---ccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 80 VRKKRKPYSKHQTLELEKEF---LYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
.++.++.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999 99999999999999999999999999999999999876
No 113
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.65 E-value=4.2e-17 Score=106.09 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=54.2
Q ss_pred cccccCCCCChhHHHHHHHcccc-----CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
..++.|+.|+..|+..|+ .|.. ++||+..++++||..|||++.+|++||+|||+|+++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 456778999999999999 7999 999999999999999999999999999999999874
No 114
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.7e-17 Score=104.06 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=56.1
Q ss_pred cccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
...++.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+++|+...
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 345789999999999999999999999999999999999999999999999999998654
No 115
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=4.7e-17 Score=103.88 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 20 TVRKKRKPYSKHQTLELEKEF-LYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F-~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
-..+.|++++.+|+.+||..| ..++||+..++.+||..|||++.+|++||+|||++.++.
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 445778889999999999999 999999999999999999999999999999999987643
No 116
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2.1e-16 Score=106.32 Aligned_cols=63 Identities=30% Similarity=0.366 Sum_probs=59.3
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhC---------------CChhhHHHHHhhhhhHHHHHHhH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLM---------------LTERQVKIWFQNRRMKNKKNTQR 141 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~---------------l~~~~V~~WF~nrR~k~rk~~~~ 141 (183)
..++.|+.|+..|+.+|+..|..++||+..++++||..++ |++.+|++||+|||+++|++...
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 4567789999999999999999999999999999999999 99999999999999999998764
No 117
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=107.67 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=56.1
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++.|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+|+|+..
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 3456789999999999999999999999999999999999999999999999999999876
No 118
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.5e-17 Score=107.43 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=54.9
Q ss_pred cCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhHH
Q psy10486 83 KRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQRQ 142 (183)
Q Consensus 83 ~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~~ 142 (183)
+...+|..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+|+|++....
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 344599999999999999999999999999999999999999999999999998876543
No 119
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.6e-16 Score=103.98 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=61.3
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHh---------------------CCChhhHHHHHhhhhhHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSL---------------------MLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l---------------------~l~~~~V~~WF~nrR~k~rk 137 (183)
..++.|+.|++.|+.+|+..|..++||+..++++||..+ +|++.+|++||+|||+++++
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 456779999999999999999999999999999999999 79999999999999999999
Q ss_pred HHhHHHHH
Q psy10486 138 NTQRQAAQ 145 (183)
Q Consensus 138 ~~~~~~~~ 145 (183)
+.+.....
T Consensus 85 ~~~~~~~~ 92 (102)
T 2da6_A 85 RQKLAMDA 92 (102)
T ss_dssp HHHHHHSS
T ss_pred hhHhhhcc
Confidence 87766444
No 120
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.64 E-value=1.9e-16 Score=103.89 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=51.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 22 RKKRKPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 22 rr~r~~ft~~Ql~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
.+.|++|+..|+.+|+..|.. ++||+..++..||..+||++.||++||+|+|++.++
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk 62 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKT 62 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccc
Confidence 355677999999999999999 999999999999999999999999999999987654
No 121
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=9e-17 Score=102.55 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=53.9
Q ss_pred cccCCCCChhHHHHHHHcc-ccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 81 RKKRKPYSKHQTLELEKEF-LYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F-~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
.+.+.+++..|+.+|+..| ..++||+..++.+||..+||++.+|++||+|||+++|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3456778999999999999 999999999999999999999999999999999999864
No 122
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=98.93 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 28 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 28 ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
-|.+|+.+|+..|..++||+..++.+||..|||+..+|++||+|||.+.++
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 368999999999999999999999999999999999999999999987653
No 123
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=3.7e-16 Score=100.09 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=56.6
Q ss_pred cccccCCCCChhHHHHHHHcccc---CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++.++.|+..|+.+|+..|.. ++||+..++++||..+||++.+|++||+|+|+++++..
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 45667889999999999999976 99999999999999999999999999999999999864
No 124
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=98.06 Aligned_cols=53 Identities=25% Similarity=0.251 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
..++.+|+.+||..|..++||+..++..||..|||++++|++||+|||++...
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 44568999999999999999999999999999999999999999999997654
No 125
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.64 E-value=2.2e-16 Score=103.63 Aligned_cols=64 Identities=25% Similarity=0.319 Sum_probs=56.9
Q ss_pred ccCCCCChhHHHHHHHcccc---CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhHHHHH
Q psy10486 82 KKRKPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQRQAAQ 145 (183)
Q Consensus 82 r~r~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~~~~~ 145 (183)
+.+++|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+........
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~~~ 70 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPELA 70 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHHHH
Confidence 34566999999999999999 99999999999999999999999999999999999976544433
No 126
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=99.08 Aligned_cols=55 Identities=42% Similarity=0.616 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTV 80 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~ 80 (183)
-.+|..|+.+||..|..++||+..++..||..|||++++|++||+|||++.++..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 4689999999999999999999999999999999999999999999999876543
No 127
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-16 Score=100.25 Aligned_cols=55 Identities=49% Similarity=0.739 Sum_probs=52.3
Q ss_pred CCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 85 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 85 ~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++..|+..|+..|..++||+..++.+||..+||++.+|++||+|||+|+|+..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 4579999999999999999999999999999999999999999999999999865
No 128
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=5.4e-16 Score=95.76 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=53.6
Q ss_pred ccccccCCCCChhHHHHHHHcccc-CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 78 VTVRKKRKPYSKHQTLELEKEFLY-NAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 78 ~~~rr~r~~~t~~q~~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
...++.|+.|+.+|+.+|+.+|.. +.||+...++.||..+||++.+|++||||+|--
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 456788999999999999999999 999999999999999999999999999999964
No 129
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.62 E-value=2e-16 Score=106.81 Aligned_cols=67 Identities=24% Similarity=0.254 Sum_probs=54.1
Q ss_pred ccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHH------------------hC---CChhhHHHHHhhhhhH
Q psy10486 76 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARS------------------LM---LTERQVKIWFQNRRMK 134 (183)
Q Consensus 76 ~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~------------------l~---l~~~~V~~WF~nrR~k 134 (183)
.+++.++.|+.|+..|+.+|+..|..++||+..++++||.. || |++.+|++||+|||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34566788999999999999999999999999999999999 88 9999999999999999
Q ss_pred HHHHHhHH
Q psy10486 135 NKKNTQRQ 142 (183)
Q Consensus 135 ~rk~~~~~ 142 (183)
++++....
T Consensus 85 ~k~k~~~~ 92 (99)
T 1lfb_A 85 EAFRHKLA 92 (99)
T ss_dssp TSCCC---
T ss_pred HHHhchhh
Confidence 87776544
No 130
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.6e-16 Score=96.96 Aligned_cols=54 Identities=24% Similarity=0.247 Sum_probs=50.6
Q ss_pred CCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 84 r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
...++..|+.+|+..|..++||+..++.+||..+||++.+|++||+|||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 445789999999999999999999999999999999999999999999998765
No 131
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=3.5e-16 Score=96.89 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=47.2
Q ss_pred CChhHHHHHHHcc-ccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 87 YSKHQTLELEKEF-LYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 87 ~t~~q~~~Le~~F-~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
-...++.+|+..| ..+.||+..++.+||..|||++.||++||+|||+|+|+
T Consensus 7 ~~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 7 GTAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp CSSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred CCchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 3467899999999 67999999999999999999999999999999999885
No 132
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=9e-16 Score=101.55 Aligned_cols=57 Identities=28% Similarity=0.388 Sum_probs=54.0
Q ss_pred ccccCCCCChhHHHHHHHcccc---CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHH
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~r 136 (183)
.++.++.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+|+|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4456889999999999999999 99999999999999999999999999999999987
No 133
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.60 E-value=7e-16 Score=113.69 Aligned_cols=63 Identities=22% Similarity=0.164 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccccc
Q psy10486 17 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVT 79 (183)
Q Consensus 17 ~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~ 79 (183)
...+.+|.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++.
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 345678999999999999999999999999999999999999999999999999999887653
No 134
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=99.62 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=56.4
Q ss_pred cccccCCCCChhHHHHHHHcccc---CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
..++.++.|+..|+.+|+..|.. ++||+..++.+||..+||++.+|++||+|+|+++++...
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 45667889999999999999876 699999999999999999999999999999999988654
No 135
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.59 E-value=9.7e-16 Score=111.85 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 19 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 19 ~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
.+.+|+|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||+|||++.++
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 567888999999999999999999999999999999999999999999999999987654
No 136
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=8.9e-16 Score=95.06 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=45.3
Q ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 30 KHQTLELEKEF-LYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 30 ~~Ql~~Le~~F-~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
..|+.+||+.| ..+.||+..++.+||..|||+++||++||+|||++.+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999999 67999999999999999999999999999999998764
No 137
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.58 E-value=7.3e-16 Score=113.43 Aligned_cols=121 Identities=24% Similarity=0.293 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChh-------hhhhhhhhcccc-----------ccccc
Q psy10486 19 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER-------QVKIWFQNIEWT-----------GQVTV 80 (183)
Q Consensus 19 ~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~-------qV~~WF~nrr~k-----------~~~~~ 80 (183)
.+.+|-+.-||..++........-+.|.-... .. -+.|+++.. .+..|...-... .....
T Consensus 22 fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti-~r-FE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~~~~~~~~~~~~ 99 (164)
T 2xsd_C 22 FKQRRIKLGFTQADVGLALGTLYGNVFSQTTI-CR-FEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRK 99 (164)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHH-HH-HHTTCSBHHHHHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHhhcCCcccccccccccccCCCcCcchh-hh-hhccCCCHHHHHHcchhHHHHHhhhccccCCCcccccccccccC
Confidence 44555666788888776655555454433211 11 234555432 245677653211 12355
Q ss_pred cccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhH
Q psy10486 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQR 141 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~ 141 (183)
++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|++...
T Consensus 100 rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 100 RKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred CCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 6778999999999999999999999999999999999999999999999999999997654
No 138
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.57 E-value=1.7e-15 Score=109.44 Aligned_cols=111 Identities=23% Similarity=0.307 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChh-------hhhhhhhhcccc---------ccccccccCCCCCh
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER-------QVKIWFQNIEWT---------GQVTVRKKRKPYSK 89 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~-------qV~~WF~nrr~k---------~~~~~rr~r~~~t~ 89 (183)
..||..++......-.-+.|. -..... .+.++|+.. .+..|+..-... .....++.|+.|+.
T Consensus 19 lg~tQ~~vg~al~~l~g~~~S-qtti~r-fe~l~ls~knm~kLkPlL~~wl~e~e~~~~~~~~~~~~~~~~rr~Rt~ft~ 96 (146)
T 1au7_A 19 LGYTQTNVGEALAAVHGSEFS-QTTICR-FENLQLSFKNACKLKAILSKWLEEAEQVGALYNEKVGANERKRKRRTTISI 96 (146)
T ss_dssp HTCCHHHHHHHHHHTTSSCCC-HHHHHH-HHTTCSBHHHHHHHHHHHHHHHHHCCC----------------CCCCCCCH
T ss_pred ccCcHHhhhhhcchhccCCCC-cchHHH-HhccCCChHHHHhcchHHHHHHHHhhcccCccCcccCCCCCCCCCCcCccH
Confidence 346666655333332233332 222211 355666642 245677653211 22345677899999
Q ss_pred hHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 90 HQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 90 ~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
.|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|++
T Consensus 97 ~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 97 AAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999874
No 139
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.57 E-value=2.1e-15 Score=110.68 Aligned_cols=60 Identities=30% Similarity=0.488 Sum_probs=54.5
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 456778999999999999999999999999999999999999999999999999999974
No 140
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=109.09 Aligned_cols=60 Identities=28% Similarity=0.435 Sum_probs=56.5
Q ss_pred ccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 78 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 78 ~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
...++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 345677889999999999999999999999999999999999999999999999999986
No 141
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.55 E-value=5.4e-15 Score=107.88 Aligned_cols=115 Identities=21% Similarity=0.277 Sum_probs=80.3
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhh-------hhhhhhhcccc-----------cccccccc
Q psy10486 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ-------VKIWFQNIEWT-----------GQVTVRKK 83 (183)
Q Consensus 22 rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~q-------V~~WF~nrr~k-----------~~~~~rr~ 83 (183)
+|-+.-||..++......-.- +..+-..... -+.+.|+..- ++.|+..-... .....++.
T Consensus 22 ~ri~lg~tq~~vg~al~~l~G-~~~Sqtti~r-fE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~~~~~~~~~~~~~~rr~ 99 (155)
T 3l1p_A 22 KRITLGYTQADVGLTLGVLFG-KVFSQTTISR-FEALQLSLKNMSKLRPLLEKWVEEADNNENLQEISKSETLVQARKRK 99 (155)
T ss_dssp HHHHTTCCHHHHHHHHHHHHS-CCCCHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHSSCC---CCCSCCC
T ss_pred hhheecccHHHHHHHHHhhcC-cccccccccc-cccccCChhhHhhcchHHHHHhhhhhcccCccccccccccccCCCCC
Confidence 334445677776655444332 2233233222 2456666432 45687542210 01245667
Q ss_pred CCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 84 r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+|+|+.
T Consensus 100 Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 100 RTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 8999999999999999999999999999999999999999999999999999974
No 142
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.54 E-value=1.8e-15 Score=113.79 Aligned_cols=62 Identities=21% Similarity=0.180 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------------CChhhhhhhhhhccc
Q psy10486 16 TGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLM---------------------LTERQVKIWFQNIEW 74 (183)
Q Consensus 16 ~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~---------------------l~~~qV~~WF~nrr~ 74 (183)
+...+.||.|+.|+..|+.+|+..|..++||+..++++||..+| |++.+|++||+|||+
T Consensus 110 ~~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 110 LPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred cccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 34467789999999999999999999999999999999999999 999999999999998
Q ss_pred ccc
Q psy10486 75 TGQ 77 (183)
Q Consensus 75 k~~ 77 (183)
+.+
T Consensus 190 ~~k 192 (194)
T 1ic8_A 190 EEA 192 (194)
T ss_dssp HCC
T ss_pred hhh
Confidence 754
No 143
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=4.2e-15 Score=93.49 Aligned_cols=58 Identities=26% Similarity=0.282 Sum_probs=50.4
Q ss_pred CCCChhHHHHHHHccc---cCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhHH
Q psy10486 85 KPYSKHQTLELEKEFL---YNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQRQ 142 (183)
Q Consensus 85 ~~~t~~q~~~Le~~F~---~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~~ 142 (183)
..|+.++..+|+..|. .++||+..++.+||..+||++.+|++||+|+|+++++....+
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 3689999999999999 999999999999999999999999999999999999865443
No 144
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=8.7e-15 Score=92.02 Aligned_cols=52 Identities=25% Similarity=0.252 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 27 PYSKHQTLELEKEFL---YNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~---~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
.|+.+|+.+|+..|. .++||+..++..||..+||+..||++||+|+|++.++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk 58 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQ 58 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhH
Confidence 799999999999999 9999999999999999999999999999999987654
No 145
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=110.46 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=53.2
Q ss_pred ccccCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------------CChhhhhhhhh
Q psy10486 12 TLEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLM---------------------LTERQVKIWFQ 70 (183)
Q Consensus 12 ~~~~~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~---------------------l~~~qV~~WF~ 70 (183)
+...+...+.||.|+.|+.+|+.+|+..|..++||+..++++||..+| |++.+|++||+
T Consensus 133 ~~~~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFq 212 (221)
T 2h8r_A 133 ACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFA 212 (221)
T ss_dssp ---------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHH
T ss_pred cccccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhH
Confidence 334456678899999999999999999999999999999999999988 89999999999
Q ss_pred hccccc
Q psy10486 71 NIEWTG 76 (183)
Q Consensus 71 nrr~k~ 76 (183)
|||+..
T Consensus 213 NRR~~~ 218 (221)
T 2h8r_A 213 NRRKEE 218 (221)
T ss_dssp HHHTTC
T ss_pred Hhhhhh
Confidence 998753
No 146
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.49 E-value=1.3e-14 Score=106.84 Aligned_cols=63 Identities=24% Similarity=0.222 Sum_probs=54.5
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQR 141 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~ 141 (183)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|+....
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 456778999999999999999999999999999999999999999999999999998876543
No 147
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5.7e-14 Score=87.33 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccc
Q psy10486 30 KHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWT 75 (183)
Q Consensus 30 ~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k 75 (183)
++|+.+|+++|..+++|+.+++..||..+||+.++|++||+|+|+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999998863
No 148
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.42 E-value=7.6e-14 Score=104.88 Aligned_cols=59 Identities=25% Similarity=0.288 Sum_probs=53.1
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhC---------------------CChhhHHHHHhhhhhHHHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLM---------------------LTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~---------------------l~~~~V~~WF~nrR~k~rk 137 (183)
..++.|+.|++.|+.+|+..|..++||+..++++||..++ |++.+|++||+|||++.+.
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 4567788999999999999999999999999999999999 9999999999999998764
No 149
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.6e-13 Score=83.23 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=45.1
Q ss_pred CChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 87 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 87 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
.-++|+.+|+++|..+++|+.+++..||..+||+...|++||+|+|+.
T Consensus 12 ~~k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 12 PYKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp SSTHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 347899999999999999999999999999999999999999999973
No 150
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.38 E-value=7.3e-13 Score=86.94 Aligned_cols=57 Identities=28% Similarity=0.293 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHcccc---CCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhHH
Q psy10486 86 PYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQRQ 142 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~~ 142 (183)
.++.++..+|...|.. ++||+..++.+||..+||++.||.+||+|+|.+.++.....
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 5788999999999976 99999999999999999999999999999999998876544
No 151
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.33 E-value=8.9e-13 Score=86.54 Aligned_cols=53 Identities=26% Similarity=0.221 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc
Q psy10486 26 KPYSKHQTLELEKEFLY---NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV 78 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~ 78 (183)
..|+.+++.+|+..|.. ++||+.+++.+||..+||++.||.+||+|+|.+.++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhh
Confidence 57999999999999988 999999999999999999999999999999877543
No 152
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.26 E-value=3.5e-12 Score=96.91 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=52.6
Q ss_pred cccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhC---------------------CChhhHHHHHhhhhhHH
Q psy10486 77 QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLM---------------------LTERQVKIWFQNRRMKN 135 (183)
Q Consensus 77 ~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~---------------------l~~~~V~~WF~nrR~k~ 135 (183)
++..++.|+.|++.|+.+|+..|..++||+..++++||..+| |++.+|++||+|||+..
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 345677888999999999999999999999999999999987 89999999999999863
No 153
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.17 E-value=1.8e-11 Score=101.54 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=51.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccc
Q psy10486 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQ 77 (183)
Q Consensus 22 rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~ 77 (183)
++.++.|+..|+..|+..|+.++||+..+|++||..+||+++||++||+|||.+.+
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34567899999999999999999999999999999999999999999999998753
No 154
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.12 E-value=2e-11 Score=101.23 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=52.3
Q ss_pred cccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHH
Q psy10486 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~r 136 (183)
++.+..++..|+..|+..|..++||+..++++||..+||++.||++||+|||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34567899999999999999999999999999999999999999999999999875
No 155
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.54 E-value=8e-09 Score=56.31 Aligned_cols=24 Identities=63% Similarity=0.926 Sum_probs=20.2
Q ss_pred hhHHHHHhhhhhHHHHHHhHHHHH
Q psy10486 122 RQVKIWFQNRRMKNKKNTQRQAAQ 145 (183)
Q Consensus 122 ~~V~~WF~nrR~k~rk~~~~~~~~ 145 (183)
.||++||+|||+|+|++.......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~ 24 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARD 24 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTT
T ss_pred CCceeccHHHHHHHHHHhHHHHHH
Confidence 489999999999999999875433
No 156
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.69 E-value=4e-06 Score=45.55 Aligned_cols=19 Identities=47% Similarity=0.672 Sum_probs=15.6
Q ss_pred hhhhhhhhhcccccccccc
Q psy10486 63 RQVKIWFQNIEWTGQVTVR 81 (183)
Q Consensus 63 ~qV~~WF~nrr~k~~~~~r 81 (183)
+||++||+|||+|.++...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 5899999999999776443
No 157
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=97.10 E-value=0.005 Score=42.65 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCcc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYV 105 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p 105 (183)
..++.++...+...+... .+ ..++|..||++...|..|+......+..........+++++...+... ..++..
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~s---~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--VS---LHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCC
T ss_pred ccCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCC
Confidence 568888887777777543 22 356899999999999999976443322211222335777777666555 334444
Q ss_pred CHHHHHHHHHHhC--CChhhHHHHHhhhhh
Q psy10486 106 SKQKRWELARSLM--LTERQVKIWFQNRRM 133 (183)
Q Consensus 106 ~~~~~~~La~~l~--l~~~~V~~WF~nrR~ 133 (183)
+. .+|+..+| ++...|..|+.....
T Consensus 79 s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 79 TA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 44 35677778 799999999976554
No 158
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.46 E-value=0.0091 Score=36.71 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 34 LELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 34 ~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
++|+.+|.....+..+....|+.+.+|+..||+.||-.+
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 789999999999999999999999999999999999653
No 159
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.34 E-value=0.003 Score=38.90 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=39.3
Q ss_pred CChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhh
Q psy10486 87 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 130 (183)
Q Consensus 87 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~n 130 (183)
.++.-.+.|..+|.....+.......|+.+.+|+..+|+.||..
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 34455688999999999999999999999999999999999953
No 160
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=96.31 E-value=0.16 Score=35.83 Aligned_cols=100 Identities=11% Similarity=0.035 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc---c-ccccCCCCChhHHHHHHHcccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV---T-VRKKRKPYSKHQTLELEKEFLY 101 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~---~-~rr~r~~~t~~q~~~Le~~F~~ 101 (183)
..|+.++...+...+... .+ ..++|..+|++...|..|+...+..+.. . ..+....++.+....+......
T Consensus 24 ~~~s~e~r~~ii~l~~~G--~s---~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG--VR---PCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT--CC---HHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 468888887777777543 22 3468999999999999999764432211 1 1112345777777777777666
Q ss_pred CCccCHHHHHH-HHHH------hCCChhhHHHHHhh
Q psy10486 102 NAYVSKQKRWE-LARS------LMLTERQVKIWFQN 130 (183)
Q Consensus 102 ~~~p~~~~~~~-La~~------l~l~~~~V~~WF~n 130 (183)
++..+..+... |... ..++...|..|...
T Consensus 99 ~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 99 NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 66556554433 3222 24788999999853
No 161
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=95.62 E-value=0.17 Score=33.77 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc---cccc-cCCCCChhHHHHHHHcccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV---TVRK-KRKPYSKHQTLELEKEFLY 101 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~---~~rr-~r~~~t~~q~~~Le~~F~~ 101 (183)
..|+.++...+...+... + + ..++|..+|++...|..|+...+..+.. .... ....+++++...+......
T Consensus 16 ~~~s~~~r~~i~~~~~~g-~-s---~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~ 90 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAADG-I-R---PCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRS 90 (128)
T ss_dssp SCCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTT
T ss_pred CcCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHh
Confidence 358888877777766532 2 3 3468999999999999999764332211 1111 2345777777788877776
Q ss_pred CCccCHHHHHHHHHHhC-------CChhhHHHHHh
Q psy10486 102 NAYVSKQKRWELARSLM-------LTERQVKIWFQ 129 (183)
Q Consensus 102 ~~~p~~~~~~~La~~l~-------l~~~~V~~WF~ 129 (183)
++..+..+........| ++...|..|..
T Consensus 91 ~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 91 SPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 66666554433222227 48888988875
No 162
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=94.86 E-value=0.4 Score=32.52 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=65.9
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccc---------ccccccCCCCChhHHH
Q psy10486 23 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQ---------VTVRKKRKPYSKHQTL 93 (183)
Q Consensus 23 r~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~---------~~~rr~r~~~t~~q~~ 93 (183)
++|..||.++...+...+..+..... .++|..+|++...|..|..++..-.. ...++.+....++.-.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~~~~~~~~~~~~~~~kr~r~~~~~~~E~ 79 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEG 79 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHGGGGGTCCCCCCCTTHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhhcchhhhccccchhhcccCCCCCHHHHH
Confidence 35789999999888888766665553 35899999999999999987543211 1123344556666666
Q ss_pred HHHHcccc----CCccCHHHHHH----HHHHhCCChh-hHHHHHhh
Q psy10486 94 ELEKEFLY----NAYVSKQKRWE----LARSLMLTER-QVKIWFQN 130 (183)
Q Consensus 94 ~Le~~F~~----~~~p~~~~~~~----La~~l~l~~~-~V~~WF~n 130 (183)
.|...+.. +--++.....+ |+..+|++.. --..|+.+
T Consensus 80 ~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~ 125 (131)
T 1hlv_A 80 LLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDR 125 (131)
T ss_dssp HHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 66666532 22345544433 5666676532 22566644
No 163
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=94.45 E-value=0.48 Score=32.90 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccc---c-ccccCCCCChhHHHHHHHcccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQV---T-VRKKRKPYSKHQTLELEKEFLY 101 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~---~-~rr~r~~~t~~q~~~Le~~F~~ 101 (183)
..|+.++.......+... .+ ..++|..+|++...|..|....+..+.. . ..+....++.+....+......
T Consensus 31 ~~~s~e~r~~iv~~~~~G--~s---~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG--VR---PCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 468888877777777532 23 3568999999999999998764332211 1 1112345778777777777766
Q ss_pred CCccCHHHHHH-HHHHh----C--CChhhHHHHHhhh
Q psy10486 102 NAYVSKQKRWE-LARSL----M--LTERQVKIWFQNR 131 (183)
Q Consensus 102 ~~~p~~~~~~~-La~~l----~--l~~~~V~~WF~nr 131 (183)
++..+..+... |.... | ++...|..|....
T Consensus 106 ~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 106 NPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 65555544333 22211 5 7889999998643
No 164
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=91.61 E-value=0.42 Score=29.40 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=36.6
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWF 128 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF 128 (183)
.+||..+|++...|..|..+ ...|+......||..+|++...+.-|+
T Consensus 29 ~~lA~~~gvs~~~is~~e~g------------------------------~~~~~~~~~~~ia~~l~v~~~~l~~~l 75 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNG------------------------------INALNAYNAALLAKILKVSVEEFSPSI 75 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTT------------------------------SSCCCHHHHHHHHHHHTSCGGGTCHHH
T ss_pred HHHHHHhCcCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHhCCCHHHHhHHH
Confidence 56999999999999999866 223556677788888888887776665
No 165
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=90.32 E-value=0.74 Score=27.61 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=32.9
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+|++...|..|..+ ...|+......||..+|++...
T Consensus 25 ~~lA~~~gis~~~is~~e~g------------------------------~~~~~~~~l~~ia~~l~v~~~~ 66 (73)
T 3omt_A 25 LWLTETLDKNKTTVSKWCTN------------------------------DVQPSLETLFDIAEALNVDVRE 66 (73)
T ss_dssp HHHHHHTTCCHHHHHHHHTT------------------------------SSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHCcCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHHCcCHHH
Confidence 56999999999999999866 2236667777888888887753
No 166
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=89.80 E-value=0.8 Score=27.45 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=31.5
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~ 122 (183)
.+||..+|++...|..|..+ ...|+......||..+|++..
T Consensus 27 ~~lA~~~gis~~~i~~~e~g------------------------------~~~~~~~~l~~ia~~l~~~~~ 67 (76)
T 3bs3_A 27 RWLAEQMGKSENTISRWCSN------------------------------KSQPSLDMLVKVAELLNVDPR 67 (76)
T ss_dssp HHHHHHHTCCHHHHHHHHTT------------------------------SSCCCHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHCcCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHHCcCHH
Confidence 56999999999999999866 223556667778888888764
No 167
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=89.66 E-value=0.82 Score=26.45 Aligned_cols=41 Identities=22% Similarity=0.027 Sum_probs=30.3
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~ 122 (183)
.+||..+|++...|..|..+. ..|+......|+..+|++..
T Consensus 18 ~~lA~~~gis~~~i~~~e~g~------------------------------~~~~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 18 SELAALLEVSRQTINGIEKNK------------------------------YNPSLQLALKIAYYLNTPLE 58 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS------------------------------CCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHCcCHHHHHHHHcCC------------------------------CCCCHHHHHHHHHHHCcCHH
Confidence 569999999999999998661 22455566677777777664
No 168
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=89.34 E-value=0.79 Score=26.72 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChh
Q psy10486 51 RWELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~ 122 (183)
..+||..+|++...|..|..+ ...|+......|+..+|++..
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g------------------------------~~~~~~~~l~~i~~~l~~~~~ 62 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERS------------------------------ETEPNGENLLALSKALQCSPD 62 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTT------------------------------SSCCBHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHhCCCHH
Confidence 356999999999999999866 222445566677888887764
No 169
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=89.31 E-value=0.55 Score=27.32 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 25 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
|..||++....+...+... ........++|..+||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 5679998877665555443 221112457999999999999999754
No 170
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=88.63 E-value=1 Score=26.91 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=31.3
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~ 122 (183)
.+||..+|++...|..|..+ ...|+......||..+|++..
T Consensus 22 ~~lA~~~gis~~~i~~~e~g------------------------------~~~~~~~~l~~ia~~l~~~~~ 62 (76)
T 1adr_A 22 AALGKMVGVSNVAISQWERS------------------------------ETEPNGENLLALSKALQCSPD 62 (76)
T ss_dssp HHHHHHHTSCHHHHHHHHTT------------------------------SSCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHCcCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHHCcCHH
Confidence 56999999999999999865 223556667778888888764
No 171
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=88.31 E-value=1 Score=27.06 Aligned_cols=42 Identities=14% Similarity=0.038 Sum_probs=31.8
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+|++...|..|..+ ...|+......||..+|++...
T Consensus 27 ~~lA~~~gis~~~i~~~e~g------------------------------~~~~~~~~l~~la~~l~~~~~~ 68 (77)
T 2b5a_A 27 EELADLAGLHRTYISEVERG------------------------------DRNISLINIHKICAALDIPAST 68 (77)
T ss_dssp HHHHHHHTCCHHHHHHHHTT------------------------------CSCCBHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHCC------------------------------CCCCCHHHHHHHHHHhCcCHHH
Confidence 56999999999999999865 2235566777788888887654
No 172
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=88.04 E-value=1.1 Score=26.60 Aligned_cols=41 Identities=24% Similarity=-0.006 Sum_probs=30.0
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~ 122 (183)
.+||..+|++...|..|..++ ..|+......|+..+|++..
T Consensus 30 ~~lA~~~gis~~~i~~~e~g~------------------------------~~~~~~~l~~l~~~l~~~~~ 70 (74)
T 1y7y_A 30 ETLAFLSGLDRSYVGGVERGQ------------------------------RNVSLVNILKLATALDIEPR 70 (74)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC------------------------------SCCBHHHHHHHHHHTTSCGG
T ss_pred HHHHHHHCcCHHHHHHHHCCC------------------------------CCCCHHHHHHHHHHhCcCHH
Confidence 569999999999999888661 23455566677777777664
No 173
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=87.69 E-value=1.2 Score=28.14 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=33.2
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~ 122 (183)
.+||..+|++...|..|..+ ...|+......||..+|++..
T Consensus 26 ~~lA~~~gis~~~is~~e~G------------------------------~~~p~~~~l~~ia~~l~v~~~ 66 (94)
T 2kpj_A 26 LEIAKSIGVSPQTFNTWCKG------------------------------IAIPRMGKVQALADYFNINKS 66 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHTT------------------------------SCCCCHHHHHHHHHHHTCCTH
T ss_pred HHHHHHHCcCHHHHHHHHhC------------------------------CCCCCHHHHHHHHHHHCcCHH
Confidence 56999999999999999866 233566778889999999874
No 174
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=87.27 E-value=1.4 Score=26.51 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=32.3
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+|++...|..|..+++ ..|+......||..+|++...
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~~-----------------------------~~~~~~~l~~ia~~l~~~~~~ 66 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGRS-----------------------------KRPTITTIRKVCGTLGISVHD 66 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTTC-----------------------------CCCCHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCC-----------------------------CCCCHHHHHHHHHHcCCCHHH
Confidence 5699999999999999986611 135666777888888887643
No 175
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=86.64 E-value=1.6 Score=26.71 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=32.7
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQV 124 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V 124 (183)
.+||..+|++...|..|-.+ ...|+......||..+|++...+
T Consensus 31 ~elA~~~gis~~~is~~e~g------------------------------~~~~~~~~l~~l~~~l~~~~~~l 73 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENA------------------------------ERRLDVIEFMDFCRGIGTDPYAL 73 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTT------------------------------SSCCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCC------------------------------CCCCCHHHHHHHHHHcCCCHHHH
Confidence 56899999999999888866 22356677788888888887543
No 176
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.75 E-value=2.5 Score=26.53 Aligned_cols=45 Identities=13% Similarity=0.286 Sum_probs=33.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 22 rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
++.+..|+.++.......+... .+ ..++|..+||+...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g--~s---~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG--ES---KASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT--CC---HHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC--CC---HHHHHHHHCcCHHHHHHHHHH
Confidence 4556789999866665666432 22 347899999999999999865
No 177
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=85.62 E-value=1.6 Score=26.33 Aligned_cols=43 Identities=14% Similarity=0.000 Sum_probs=31.8
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQV 124 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V 124 (183)
.+||..+|++...|..|-.+ ...|+......||..+|++...+
T Consensus 19 ~~lA~~~gis~~~i~~~e~g------------------------------~~~p~~~~l~~ia~~l~v~~~~l 61 (77)
T 2k9q_A 19 KSVAEEMGISRQQLCNIEQS------------------------------ETAPVVVKYIAFLRSKGVDLNAL 61 (77)
T ss_dssp HHHHHHHTSCHHHHHHHHTC------------------------------CSCCHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHhCcCHHHH
Confidence 56999999999999888865 12245566777888888887654
No 178
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=85.51 E-value=2.2 Score=25.05 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=30.8
Q ss_pred HHHHHHcC--CChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLM--LTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~--l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+| ++...|..|-.+ ...|+......||..+|++...
T Consensus 25 ~~lA~~~g~~is~~~i~~~e~g------------------------------~~~~~~~~l~~la~~l~v~~~~ 68 (71)
T 2ewt_A 25 HGVEEKSQGRWKAVVVGSYERG------------------------------DRAVTVQRLAELADFYGVPVQE 68 (71)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHT------------------------------CSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHCCcCCHHHHHHHHCC------------------------------CCCCCHHHHHHHHHHHCcCHHH
Confidence 46899999 888888888865 2235666777788888877643
No 179
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=85.32 E-value=1.8 Score=27.49 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCH
Q psy10486 28 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSK 107 (183)
Q Consensus 28 ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~ 107 (183)
+....|..|...-. .+ ..+||..+|++...|..|..+ . .|+.
T Consensus 24 i~~~rLk~lR~~~g----lT---q~eLA~~~GiS~~tis~iE~G------------------------------~-~~s~ 65 (88)
T 3t76_A 24 VSYNKLWKLLIDRD----MK---KGELREAVGVSKSTFAKLGKN------------------------------E-NVSL 65 (88)
T ss_dssp EECHHHHHHHHHTT----CC---HHHHHHHHTCCHHHHHHHHTT------------------------------C-CCCH
T ss_pred HHHHHHHHHHHHcC----CC---HHHHHHHHCcCHHHHHHHHcC------------------------------C-CcCH
Confidence 44455555544332 22 356999999999999888855 1 1456
Q ss_pred HHHHHHHHHhCCChhhH
Q psy10486 108 QKRWELARSLMLTERQV 124 (183)
Q Consensus 108 ~~~~~La~~l~l~~~~V 124 (183)
.....||..||++...+
T Consensus 66 ~~l~kIa~~L~v~~~~L 82 (88)
T 3t76_A 66 TVLLAICEYLNCDFGDI 82 (88)
T ss_dssp HHHHHHHHHHTCCGGGT
T ss_pred HHHHHHHHHHCcCHHHH
Confidence 67778888888887653
No 180
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=85.10 E-value=1.8 Score=26.36 Aligned_cols=42 Identities=12% Similarity=0.016 Sum_probs=32.1
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+|++...|..|-.+ ...|+......||..+|++...
T Consensus 28 ~~lA~~~gis~~~i~~~e~g------------------------------~~~~~~~~l~~ia~~l~v~~~~ 69 (82)
T 3s8q_A 28 EDLAYKSNLDRTYISGIERN------------------------------SRNLTIKSLELIMKGLEVSDVV 69 (82)
T ss_dssp HHHHHHHTCCHHHHHHHHTT------------------------------CCCCBHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHhCcCHHHHHHHHCC------------------------------CCCCCHHHHHHHHHHHCcCHHH
Confidence 46899999999999888866 2245667778888888888753
No 181
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=84.61 E-value=2 Score=26.78 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=31.0
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+|++...|..|..+ ...|+......||..+|++...
T Consensus 34 ~~lA~~~gis~~~is~~e~g------------------------------~~~~~~~~l~~ia~~l~v~~~~ 75 (92)
T 1lmb_3 34 ESVADKMGMGQSGVGALFNG------------------------------INALNAYNAALLAKILKVSVEE 75 (92)
T ss_dssp HHHHHHHTSCHHHHHHHHTT------------------------------SSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHCcCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHHCCCHHH
Confidence 56999999999999988866 1235556667777777777654
No 182
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=83.92 E-value=2.6 Score=26.45 Aligned_cols=45 Identities=13% Similarity=0.292 Sum_probs=35.3
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQ 129 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~ 129 (183)
.+||..+|++...|..|..+ ...|+......|+..+|++. .+||.
T Consensus 25 ~~lA~~~gis~~~is~~e~g------------------------------~~~~~~~~~~~i~~~l~v~~---~~~l~ 69 (94)
T 2ict_A 25 REFARAMEIAPSTASRLLTG------------------------------KAALTPEMAIKLSVVIGSSP---QMWLN 69 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHHT------------------------------SSCCCHHHHHHHHHHTCSCH---HHHHH
T ss_pred HHHHHHhCCCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHHCcCH---HHHHH
Confidence 57999999999999999866 22356667788899999876 46774
No 183
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=83.11 E-value=2.5 Score=27.65 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.6
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|-.+
T Consensus 26 ~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 26 HQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 56999999999999999876
No 184
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=82.75 E-value=2.6 Score=25.90 Aligned_cols=44 Identities=14% Similarity=-0.093 Sum_probs=33.4
Q ss_pred HHHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 51 RWELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
..+||..+|++...|..|-.+++ ..|+......||..+|++...
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~-----------------------------~~p~~~~l~~ia~~l~v~~~~ 73 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI-----------------------------ATPAFFTIAAVARVLDLSLDD 73 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC-----------------------------SSCBHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC-----------------------------CCCCHHHHHHHHHHhCCCHHH
Confidence 45899999999999998886611 146667778889999888643
No 185
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=82.64 E-value=3 Score=22.18 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
..+++++...+...+... .+ ..+||..||++...|..|...
T Consensus 4 ~~l~~~~~~~i~~~~~~g--~s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN--VS---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT--CC---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC--CC---HHHHHHHHCcCHHHHHHHHhh
Confidence 357787776666666433 23 457999999999999999865
No 186
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=82.57 E-value=2.5 Score=27.20 Aligned_cols=43 Identities=12% Similarity=0.017 Sum_probs=32.6
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQV 124 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V 124 (183)
.+||..+|++...|..|-.+ ...|+......||..+|++...+
T Consensus 45 ~elA~~~gis~~~is~iE~G------------------------------~~~ps~~~l~~ia~~l~v~~~~l 87 (99)
T 3g5g_A 45 EDLAYKSNLDRTYISGIERN------------------------------SRNLTIKSLELIMKGLEVSDVVF 87 (99)
T ss_dssp HHHHHHHTCCHHHHHHHHTT------------------------------CSCCBHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCC------------------------------CCCCCHHHHHHHHHHHCcCHHHH
Confidence 56899999999888888765 23466677888888888877543
No 187
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=82.14 E-value=6.1 Score=27.27 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=51.5
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHH-Hc--CCChhhhhhhhhhcccc----c--cccccccCCCCChhH
Q psy10486 22 RKKRKPYSKHQTLELEKEF-LYNAYVSKQKRWELAR-SL--MLTERQVKIWFQNIEWT----G--QVTVRKKRKPYSKHQ 91 (183)
Q Consensus 22 rr~r~~ft~~Ql~~Le~~F-~~~~~p~~~~~~~La~-~l--~l~~~qV~~WF~nrr~k----~--~~~~rr~r~~~t~~q 91 (183)
+++|..+|.+|...+...+ +.++-.+..+....|. .+ +++...|..|..++..- . ....++.+....++-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l~~~~~~~~~~kr~r~~~~~~l 85 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLDNTVEKPWDVKRNRPPKYPLL 85 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHTTTSCSSSSSSSCCCCCSCHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHhhhcccccccccCCCCCCCHHH
Confidence 5788999999999999999 7777777655444322 67 78888899998875321 0 112233344444554
Q ss_pred HHHHHHcccc
Q psy10486 92 TLELEKEFLY 101 (183)
Q Consensus 92 ~~~Le~~F~~ 101 (183)
-..|...|..
T Consensus 86 e~~L~~Wi~~ 95 (144)
T 1iuf_A 86 EAALFEWQVQ 95 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 188
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=81.57 E-value=3.5 Score=26.13 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=17.7
Q ss_pred HHHHHHHcCCChhh----hhhhhhh
Q psy10486 51 RWELARSLMLTERQ----VKIWFQN 71 (183)
Q Consensus 51 ~~~La~~l~l~~~q----V~~WF~n 71 (183)
..+||..+|++... |..|-.+
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCC
Confidence 35799999999998 8888866
No 189
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=80.98 E-value=3.1 Score=27.76 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=17.9
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|-.+
T Consensus 29 ~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 29 EQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp HHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHhCcCHHHHHHHHCC
Confidence 56999999999999999977
No 190
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=80.82 E-value=3.1 Score=27.91 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=36.2
Q ss_pred cCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 83 KRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 83 ~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
++..+|.++...+-..+..+..+.. .++|..+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 4678999988777666644444443 367899999999999999765543
No 191
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=80.44 E-value=3.5 Score=27.05 Aligned_cols=42 Identities=21% Similarity=0.074 Sum_probs=33.1
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+|++...|..|-.+ ...|+......||..+|++...
T Consensus 38 ~elA~~~gis~~~is~~E~G------------------------------~~~p~~~~l~~ia~~l~v~~~~ 79 (114)
T 3vk0_A 38 EELARQCGLDRTYVSAVERK------------------------------RWNIALSNIEKMAAALGVAAYQ 79 (114)
T ss_dssp HHHHHHHTCCHHHHHHHTTT------------------------------CCCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHCcCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHhCCCHHH
Confidence 56999999999999988866 2236677888899999988753
No 192
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=80.27 E-value=3.4 Score=25.11 Aligned_cols=43 Identities=16% Similarity=0.028 Sum_probs=32.1
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+|++...|..|-.+. ...|+......||..+|++...
T Consensus 27 ~elA~~~gis~~~is~~E~G~-----------------------------~~~p~~~~l~~ia~~l~v~~~~ 69 (78)
T 3qq6_A 27 SELAEKAGVAKSYLSSIERNL-----------------------------QTNPSIQFLEKVSAVLDVSVHT 69 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHTTS-----------------------------CCCCBHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCC-----------------------------CCCCCHHHHHHHHHHHCcCHHH
Confidence 468999999998888887551 1236667788889999987643
No 193
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=80.12 E-value=3.8 Score=26.66 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=17.6
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|..+
T Consensus 28 ~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 28 NELAELLHVHRNSVSALINN 47 (113)
T ss_dssp HHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 56999999999999999866
No 194
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=79.77 E-value=2.1 Score=25.99 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHHHHHcCCChhhhhhhhhh
Q psy10486 51 RWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~n 71 (183)
..+||..+|++...|..|..+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHC
Confidence 367999999999999999976
No 195
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=79.55 E-value=3.1 Score=27.34 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=31.3
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+|++...|..|-.++ ..|+......||..+|++...
T Consensus 40 ~elA~~~gis~~~is~~E~G~------------------------------~~ps~~~l~~ia~~l~v~~~~ 81 (111)
T 3mlf_A 40 KELGDLFKVSSRTIQNMEKDS------------------------------TNIKDSLLSKYMSAFNVKYDD 81 (111)
T ss_dssp HHHHHHHTSCHHHHHHHHHCC------------------------------TTCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHCcCHHHHHHHHCCC------------------------------CCCCHHHHHHHHHHhCcCHHH
Confidence 469999999999999998662 235556677777888877654
No 196
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=78.61 E-value=6.9 Score=26.76 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=29.5
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELE 96 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le 96 (183)
.++|..+|++.+.|+.|=..---..........+.|+..++..|.
T Consensus 4 ~e~A~~~gvs~~tLR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~ 48 (135)
T 1q06_A 4 SDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELT 48 (135)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCeeeCHHHHHHHH
Confidence 468999999999999996542111111112334568888888774
No 197
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=78.50 E-value=3.1 Score=25.93 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=31.8
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+|++...|..|..+ ...|+......|+..+|++...
T Consensus 30 ~~lA~~~gis~~~is~~e~g------------------------------~~~p~~~~l~~la~~l~v~~~~ 71 (91)
T 1x57_A 30 KDLATKINEKPQVIADYESG------------------------------RAIPNNQVLGKIERAIGLKLRG 71 (91)
T ss_dssp HHHHHHHTSCHHHHHHHHHT------------------------------CSCCCHHHHHHHHHHHTBCCSS
T ss_pred HHHHHHHCcCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHHCcCHHH
Confidence 56999999999999998866 2235566677788888877754
No 198
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=78.44 E-value=1.9 Score=24.93 Aligned_cols=45 Identities=22% Similarity=0.432 Sum_probs=29.3
Q ss_pred CCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHh
Q psy10486 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQ 129 (183)
Q Consensus 84 r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~ 129 (183)
+..++.+....+...+... ........++|..+||+...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 3457777665554433322 22111256899999999999999975
No 199
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=78.35 E-value=3 Score=22.54 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 27 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
.+++++...+...+... .+ ..+||..+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g--~s---~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--HP---RQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--CC---HHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC--CC---HHHHHHHHCCCHHHHHHHHHHc
Confidence 35666666665555543 33 3579999999999999998653
No 200
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=78.27 E-value=1.6 Score=26.90 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 29 SKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 29 t~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
+...+......+....-.+. .+||..+|++...|..|..+
T Consensus 9 ~~~~~~~~l~~~r~~~glsq---~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 9 SPTQLANAMKLVRQQNGWTQ---SELAKKIGIKQATISNFENN 48 (88)
T ss_dssp SHHHHHHHHHHHHHHTTCCH---HHHHHHHTCCHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHcCCCH---HHHHHHhCCCHHHHHHHHcC
Confidence 34444433344444444443 56999999999999999866
No 201
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=78.18 E-value=4.4 Score=25.70 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHhhhc-CCCCHHHHHHHHHHcCCChhhhhhhhhhccc
Q psy10486 25 RKPYSKHQTLELEKEFLYN-AYVSKQKRWELARSLMLTERQVKIWFQNIEW 74 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~~-~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~ 74 (183)
|..||.++.......+... .. ...++|..+||+...|..|....+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 4579998876666555432 22 2457999999999999999876443
No 202
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=78.11 E-value=4.9 Score=26.31 Aligned_cols=41 Identities=15% Similarity=0.018 Sum_probs=32.1
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~ 122 (183)
.+||..+|++...|..|-.+ ...|+......||..+|++..
T Consensus 45 ~~lA~~~gis~~~is~~E~g------------------------------~~~~~~~~l~~la~~l~v~~~ 85 (117)
T 3f52_A 45 RELAEASRVSPGYLSELERG------------------------------RKEVSSELLASVCHALGASVA 85 (117)
T ss_dssp HHHHHHTTSCHHHHHHHHTT------------------------------SSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHCcCHHHHHHHHCC------------------------------CCCCCHHHHHHHHHHhCCCHH
Confidence 46899999999888888865 224667788889999998864
No 203
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=77.90 E-value=3.2 Score=24.01 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.7
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|..+
T Consensus 18 ~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 18 AELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 56999999999999999866
No 204
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=76.96 E-value=6.4 Score=24.67 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=33.7
Q ss_pred CChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 87 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 87 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
++..+..+|.-.|.... ...++|..+|++...|+.+...-+.+-++..
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 55666666665443221 4668999999999999999977666666554
No 205
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=76.25 E-value=3.6 Score=25.25 Aligned_cols=20 Identities=20% Similarity=0.234 Sum_probs=17.6
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|..+
T Consensus 35 ~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 56999999999999999866
No 206
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=76.06 E-value=7.4 Score=25.41 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=41.3
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 130 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~n 130 (183)
.++|..+|++...|+.|=..---............++..++..|. .......+|++...|+.++..
T Consensus 5 ~e~A~~~gvs~~tLR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~-------------~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 5 GQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLDRLQ-------------QILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTSSCCSEECSSCCEEBCHHHHHHHH-------------HHHHHHHTTCCHHHHHHHHTC
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCeecCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHhC
Confidence 468999999999999996541111111112334568888887773 222236677777777777743
No 207
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=75.12 E-value=14 Score=23.88 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=37.3
Q ss_pred hhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCC
Q psy10486 40 FLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLML 119 (183)
Q Consensus 40 F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l 119 (183)
|....-.+. .+||..+|++...|..|-.++ ..|+......|+..+|+
T Consensus 22 lr~~~gltq---~eLA~~lGis~~~is~ie~G~------------------------------~~~s~~~~~kla~~lgv 68 (104)
T 3trb_A 22 LGFLDKMSA---NQLAKHLAIPTNRVTAILNGA------------------------------RSITADTALRLAKFFGT 68 (104)
T ss_dssp HHHTTSCCH---HHHHHHHTSCHHHHHHHHTTS------------------------------SCCCHHHHHHHHHHHTC
T ss_pred HHHHcCCCH---HHHHHHHCcCHHHHHHHHcCC------------------------------CCCCHHHHHHHHHHHCc
Confidence 444444443 569999999999999888662 23566677788999998
Q ss_pred ChhhHHHHH
Q psy10486 120 TERQVKIWF 128 (183)
Q Consensus 120 ~~~~V~~WF 128 (183)
+. ..|+
T Consensus 69 s~---~~ll 74 (104)
T 3trb_A 69 TP---EFWL 74 (104)
T ss_dssp CH---HHHH
T ss_pred CH---HHHh
Confidence 75 4555
No 208
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=74.95 E-value=1.1 Score=32.43 Aligned_cols=40 Identities=3% Similarity=-0.111 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 32 QTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 32 Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
-+++....|....|-. .....||...|++...|...|.++
T Consensus 33 Il~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK 72 (215)
T 2qko_A 33 LVNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSR 72 (215)
T ss_dssp HHHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCH
T ss_pred HHHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCH
Confidence 3455566688888754 334679999999999999999985
No 209
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=74.35 E-value=28 Score=27.01 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=51.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHcC---CChhhhhhhhhhccccc----cccccccCCCCChhHHHHHHHccccCCccCHH
Q psy10486 36 LEKEFLYNAYVSKQKRWELARSLM---LTERQVKIWFQNIEWTG----QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQ 108 (183)
Q Consensus 36 Le~~F~~~~~p~~~~~~~La~~l~---l~~~qV~~WF~nrr~k~----~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~ 108 (183)
+...|.. -....+....|+..+| ++...|..|+..-+... .+........++.+++.. ....++..+..
T Consensus 15 i~~~~~~-G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~~~i~~---~v~~~~~~t~~ 90 (345)
T 3hot_A 15 LIFCFHL-KKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQA---LLDEDDAQTQK 90 (345)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCHHHHHH---HHHHCSCCCHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccHHHHHH---HHHhCccchHH
Confidence 3344443 3444455567788888 99999999998644311 001111122344444433 33445544433
Q ss_pred HHHHHHHHhCCChhhHHHHHhh
Q psy10486 109 KRWELARSLMLTERQVKIWFQN 130 (183)
Q Consensus 109 ~~~~La~~l~l~~~~V~~WF~n 130 (183)
+|+..++++...|..+++.
T Consensus 91 ---~ia~~l~vs~~tV~r~L~~ 109 (345)
T 3hot_A 91 ---QLAEQLEVSQQAVSNRLRE 109 (345)
T ss_dssp ---HHHHHTTSCHHHHHHHHHH
T ss_pred ---HHHHHHCCCHHHHHHHHHH
Confidence 6677889999999887754
No 210
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=74.35 E-value=6.9 Score=24.97 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=31.4
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~ 122 (183)
.+||..+|++...|..|..+ ...|+......|+..+|++..
T Consensus 35 ~~lA~~~gis~~~is~~e~g------------------------------~~~~~~~~l~~l~~~l~v~~~ 75 (104)
T 3cec_A 35 ANFAEILGVSNQTIQEVING------------------------------QRSITVDIAIRLGKALGNGPR 75 (104)
T ss_dssp HHHHHHHTSCHHHHHHHHTT------------------------------SSCCCHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHCcCHHHHHHHHcC------------------------------CcCCCHHHHHHHHHHHCcCHH
Confidence 56999999999999988866 223556677788888888763
No 211
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=74.16 E-value=11 Score=25.95 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.7
Q ss_pred ccCHHHHHHHHHHhCCChhhH
Q psy10486 104 YVSKQKRWELARSLMLTERQV 124 (183)
Q Consensus 104 ~p~~~~~~~La~~l~l~~~~V 124 (183)
.|+......|+..+|++...+
T Consensus 107 ~ps~~~l~~la~~lgv~~~~l 127 (141)
T 3kxa_A 107 SLQDKTVQKLANALGVSPLEV 127 (141)
T ss_dssp CCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHH
Confidence 477888888999999887543
No 212
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=73.89 E-value=8.9 Score=22.81 Aligned_cols=38 Identities=5% Similarity=-0.016 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 27 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
.++.+.+..+......+ ..+||..+|++...|..|-.+
T Consensus 10 ~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTT
T ss_pred CCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcC
Confidence 68888888887765543 367999999999999999876
No 213
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=73.88 E-value=13 Score=25.62 Aligned_cols=45 Identities=2% Similarity=-0.122 Sum_probs=30.3
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELE 96 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le 96 (183)
.++|..+|++.+.|+.|=..---..........+.++..++..|.
T Consensus 6 ~e~A~~~gvs~~tLR~Ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~ 50 (142)
T 3gp4_A 6 KEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWIL 50 (142)
T ss_dssp HHHHHHHTSCHHHHHHHHHHTSSCCCCBCTTSCBCBCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCCeeeCHHHHHHHH
Confidence 468999999999999996542221111123345678888888774
No 214
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=73.22 E-value=2.4 Score=26.96 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 19 VTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 19 ~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
......-..+|+.+.++|.-.+.- + ...+||..||++...|.....+-
T Consensus 21 ~~~~~~~~~Lt~rE~~Vl~l~~~G--~----s~~eIA~~L~iS~~TV~~~~~~i 68 (90)
T 3ulq_B 21 MSSQKEQDVLTPRECLILQEVEKG--F----TNQEIADALHLSKRSIEYSLTSI 68 (90)
T ss_dssp --------CCCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccccccccCCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 334445567999999999887732 2 23579999999999999887663
No 215
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=72.89 E-value=9 Score=23.48 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHHHHcCCChhhhhhhhhh-cccccccccc-ccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHh
Q psy10486 52 WELARSLMLTERQVKIWFQN-IEWTGQVTVR-KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQ 129 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n-rr~k~~~~~r-r~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~ 129 (183)
.++|+.+|++...|+.|-.. --.. ..... .....++.+++..|. ....|-..+|++...|+..+.
T Consensus 9 ~e~A~~~gvs~~tlR~ye~~~gl~~-p~r~~~~g~R~Y~~~dl~~l~------------~I~~l~~~~G~sl~ei~~~l~ 75 (81)
T 2jml_A 9 RTIARMTGIREATLRAWERRYGFPR-PLRSEGNNYRVYSREEVEAVR------------RVARLIQEEGLSVSEAIAQVK 75 (81)
T ss_dssp HHHHHTTSTTHHHHHHHHHHTCCSC-CBSSSCSSSCEECHHHHHHHH------------HHHHHHHHTSTHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHhCCCCC-CcCCCCCCeeecCHHHHHHHH------------HHHHHHHHCCCCHHHHHHHHH
Confidence 46899999999999999653 1111 11111 334568888888773 233333377888887777664
Q ss_pred h
Q psy10486 130 N 130 (183)
Q Consensus 130 n 130 (183)
.
T Consensus 76 ~ 76 (81)
T 2jml_A 76 T 76 (81)
T ss_dssp H
T ss_pred c
Confidence 3
No 216
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=72.28 E-value=10 Score=23.34 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=21.9
Q ss_pred HHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 38 KEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 38 ~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
..+....-.+. .+||..+|++...|..|-.+
T Consensus 20 ~~~R~~~gltq---~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 20 RQARLDAGLTQ---ADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HHHHHHTTCCH---HHHHHHTTCCHHHHHHHHTT
T ss_pred HHHHHHcCCCH---HHHHHHhCcCHHHHHHHHCC
Confidence 33444444444 46999999999999988866
No 217
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=72.04 E-value=10 Score=24.69 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=38.5
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQ 129 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~ 129 (183)
.++|..+|++...|+.|-..---............++..++..|... .....+|++...|+..+.
T Consensus 6 ~e~A~~~gvs~~tLR~ye~~Gll~p~~~~~~g~R~Y~~~dl~~l~~I-------------~~l~~~G~~l~~I~~~l~ 70 (109)
T 1r8d_A 6 KQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQI-------------LFFKEIGFRLDEIKEMLD 70 (109)
T ss_dssp HHHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCeECCCCCeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHh
Confidence 46899999999999999653111111111233456888888877432 123455555555555553
No 218
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=71.75 E-value=2.7 Score=26.13 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 24 KRKPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 24 ~r~~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
.-..++.+++..|...|.. +-+++..+...+...+|++...|..+|..
T Consensus 17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 69 (91)
T 2pmy_A 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQR 69 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHH
Confidence 3456899999999999975 45788889888888899888888887754
No 219
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=71.43 E-value=5.8 Score=25.21 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=17.1
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|-.+
T Consensus 47 ~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 47 EEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHhCcCHHHHHHHHcC
Confidence 56999999999999999765
No 220
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=71.11 E-value=8.9 Score=26.67 Aligned_cols=47 Identities=15% Similarity=0.049 Sum_probs=31.1
Q ss_pred HHHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHH
Q psy10486 51 RWELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEK 97 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~ 97 (183)
..++|..+|++.+.|+.|=..---..........+.|+..++..|..
T Consensus 19 I~evA~~~gvs~~tLR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~ 65 (148)
T 3gpv_A 19 IGQVAKMQHLTISQIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEM 65 (148)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHH
Confidence 35699999999999999965422211111223456788888887743
No 221
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=70.65 E-value=6.4 Score=23.96 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=29.0
Q ss_pred HHHHHHHhCCChhhHHHHHhhhhhHHHHHHhHHHHHhc
Q psy10486 110 RWELARSLMLTERQVKIWFQNRRMKNKKNTQRQAAQAS 147 (183)
Q Consensus 110 ~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~~~~~~~ 147 (183)
..+||..+|++...|..|..+...-..+....+.....
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~~~~~Ie~~T~G 50 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPLRQSDIEVRTAY 50 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 67899999999999999997766666565555555443
No 222
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=70.15 E-value=5.7 Score=23.01 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=17.9
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|..+
T Consensus 20 ~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 20 TELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp HHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHcC
Confidence 56999999999999999876
No 223
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=70.10 E-value=7.1 Score=22.67 Aligned_cols=48 Identities=10% Similarity=-0.081 Sum_probs=33.9
Q ss_pred CCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 86 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
.+++.+..+|.-.|... ....++|..+|++...|+.+...-+.+-++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 36777777777654333 1356889999999999999987666555543
No 224
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=69.80 E-value=9.2 Score=24.61 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHh-hhc-CCCCH-HHHHHHHHHcCCChhhhhhhhhhcc
Q psy10486 25 RKPYSKHQTLELEKEF-LYN-AYVSK-QKRWELARSLMLTERQVKIWFQNIE 73 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F-~~~-~~p~~-~~~~~La~~l~l~~~qV~~WF~nrr 73 (183)
+..||.++.......+ ... .+++. ....++|..+||+...|..|.....
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4579998876555544 332 23332 3456799999999999999987643
No 225
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=69.70 E-value=6.6 Score=25.38 Aligned_cols=42 Identities=14% Similarity=-0.069 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 25 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
...+|+.+.++|.-.++.- + ..+||..||++...|..+..+-
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~---s---~~EIA~~L~iS~~TV~~~l~ri 73 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF---L---VTEIAKKLNRSIKTISSQKKSA 73 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC---C---HHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC---C---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4569999999998865432 2 2679999999999999888663
No 226
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=69.36 E-value=17 Score=22.20 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=37.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHc-CCChhhhhhhhhh
Q psy10486 20 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSL-MLTERQVKIWFQN 71 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l-~l~~~qV~~WF~n 71 (183)
+..-.+..+|.++-..|+.....-..-....-..||..+ |-+..+|..-|.+
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 65 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence 334456789999999999988874332344456799988 6888888865544
No 227
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=68.38 E-value=15 Score=25.41 Aligned_cols=66 Identities=12% Similarity=0.051 Sum_probs=40.9
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 130 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~n 130 (183)
.++|..+|++...|+.|=..---..........+.++..++..|.. ......+|++...|+..+..
T Consensus 8 ~evA~~~Gvs~~tLR~ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~-------------I~~lr~~G~sl~~I~~~l~~ 73 (146)
T 3hh0_A 8 SEFASVGDVTVRALRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQ-------------IQSFKHLGFSLGEIQNIILQ 73 (146)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTSSCCSEECTTSCEEBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHTS
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCeECCCCCEeeCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHc
Confidence 4689999999999999976522111111223456788888887732 22234566666666666643
No 228
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=68.31 E-value=10 Score=24.18 Aligned_cols=20 Identities=20% Similarity=0.067 Sum_probs=17.9
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|..+
T Consensus 18 ~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 18 SELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 56999999999999999866
No 229
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=68.28 E-value=12 Score=22.47 Aligned_cols=20 Identities=25% Similarity=0.042 Sum_probs=17.7
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|..+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 27 SELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHcC
Confidence 56999999999999999866
No 230
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=68.26 E-value=7.9 Score=24.11 Aligned_cols=42 Identities=10% Similarity=0.217 Sum_probs=29.4
Q ss_pred cCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHh
Q psy10486 83 KRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQ 129 (183)
Q Consensus 83 ~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~ 129 (183)
.+..++.++.......+... . ...++|..+||+...|..|..
T Consensus 19 ~~~~ys~e~k~~~v~~~~~g--~---s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIHDG--E---SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCSSCCHHHHHHHHHHHHHT--C---CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCC--C---CHHHHHHHHCcCHHHHHHHHH
Confidence 45578888755544444322 1 355789999999999999974
No 231
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=67.93 E-value=12 Score=22.25 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 28 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 28 ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
+++.+..+|.-.+.. + + ..++|..+|++...|..+...
T Consensus 17 L~~~e~~vl~l~~~g--~-s---~~eIA~~l~is~~tV~~~~~r 54 (79)
T 1x3u_A 17 LSERERQVLSAVVAG--L-P---NKSIAYDLDISPRTVEVHRAN 54 (79)
T ss_dssp HCHHHHHHHHHHTTT--C-C---HHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC--C-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 678888888774322 2 2 247999999999999988765
No 232
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=67.63 E-value=11 Score=22.84 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=15.9
Q ss_pred HHHHHHcCCChhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQ 70 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~ 70 (183)
.+||..+|++...|..|..
T Consensus 26 ~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 26 SALSRQFGYAPTTLANALE 44 (74)
T ss_dssp HHHHHHHSSCHHHHHHTTT
T ss_pred HHHHHHHCcCHHHHHHHHc
Confidence 4699999999998988863
No 233
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=65.56 E-value=11 Score=26.87 Aligned_cols=42 Identities=10% Similarity=0.023 Sum_probs=32.6
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQ 123 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~ 123 (183)
.+||..+|++...|..|-.+ ...|+......||..++++...
T Consensus 28 ~~lA~~~gis~~~is~~e~g------------------------------~~~p~~~~l~~ia~~l~v~~~~ 69 (192)
T 1y9q_A 28 DATAQLTGVSKAMLGQIERG------------------------------ESSPTIATLWKIASGLEASFSA 69 (192)
T ss_dssp HHHHHHHSSCHHHHHHHHTT------------------------------CSCCCHHHHHHHHHHHTCCSGG
T ss_pred HHHHHHHCcCHHHHHHHHcC------------------------------CCCCCHHHHHHHHHHHCcCHHH
Confidence 56899999998888888765 2236677788899999988754
No 234
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=63.78 E-value=12 Score=21.85 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=34.0
Q ss_pred CCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHH
Q psy10486 86 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~r 136 (183)
.+++.+..+|.-.|..+.+- .....++|..+|++...|+.+...-+.+-+
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 36778888888877321110 113467899999999999998865555544
No 235
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=63.37 E-value=14 Score=23.25 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=28.8
Q ss_pred CCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhh
Q psy10486 85 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 130 (183)
Q Consensus 85 ~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~n 130 (183)
..++.++.......+.... .....++|..+||+...|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 4577776655444443220 113568899999999999999854
No 236
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=62.80 E-value=14 Score=21.79 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=34.2
Q ss_pred CCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHH
Q psy10486 86 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~r 136 (183)
.+++.+..++.-.|..... ......++|..+|++...|+.+...-+.+-+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4778888888877741100 0113458899999999999998876555544
No 237
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=62.55 E-value=4.1 Score=25.14 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcc
Q psy10486 24 KRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIE 73 (183)
Q Consensus 24 ~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr 73 (183)
.-..+++.+.++|.-.+.. . ...+||..||++...|..+..+-+
T Consensus 18 ~~~~Lt~~e~~vl~l~~~g---~---s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQG---L---PNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp CGGGSCHHHHHHHHHHTTT---C---CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHcC---C---CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3346999999999985422 2 235799999999999998886633
No 238
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=61.36 E-value=15 Score=26.01 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChh
Q psy10486 50 KRWELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 50 ~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~ 122 (183)
...+||..+|++...|..|..+ ...| ......||..+|++..
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g------------------------------~~~p-~~~l~~ia~~~~v~~~ 63 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR------------------------------GAIS-YDFAAHCALETGANLQ 63 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS------------------------------SSCC-HHHHHHHHHHHCCCHH
T ss_pred CHHHHHHHhCcCHHHHHHHHhC------------------------------CCCC-HHHHHHHHHHHCCCHH
Confidence 4568999999999999999864 1224 4566778899998873
No 239
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=61.11 E-value=8 Score=24.53 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWT 75 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k 75 (183)
..+++.+.++|.-.+..- + ..+||..||++...|..+..+-+.+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~---s---~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL---T---NKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC---C---HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC---C---HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 468999999999864332 2 2579999999999999888764433
No 240
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=61.05 E-value=17 Score=23.89 Aligned_cols=48 Identities=10% Similarity=-0.009 Sum_probs=34.8
Q ss_pred CChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 87 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 87 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
+++.+..++.-.|...- ...++|..+|++...|+.|...-+.+-++..
T Consensus 23 L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp SCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 66777777766543331 3568899999999999999987776655543
No 241
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=60.28 E-value=37 Score=23.05 Aligned_cols=107 Identities=11% Similarity=0.126 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCCh--hhhhhhhhhcccccc------ccccccCCCCCh
Q psy10486 23 KKRKPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLMLTE--RQVKIWFQNIEWTGQ------VTVRKKRKPYSK 89 (183)
Q Consensus 23 r~r~~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~--~qV~~WF~nrr~k~~------~~~rr~r~~~t~ 89 (183)
+++..+|.+|+..|...|.. +-+++..+...+...||..+ ..+...+.+-...-. .........-+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~~ 84 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPE 84 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCCH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHHHHHhhhcccccH
Confidence 34567999999999999975 46799999888888888654 444444433111100 000001111123
Q ss_pred hHHHHHHHccc--cCCccCHHHHHHHHHHhC--CChhhHHHHHh
Q psy10486 90 HQTLELEKEFL--YNAYVSKQKRWELARSLM--LTERQVKIWFQ 129 (183)
Q Consensus 90 ~q~~~Le~~F~--~~~~p~~~~~~~La~~l~--l~~~~V~~WF~ 129 (183)
+.+...-..|. .+.+++..+...+...+| |+...|...|.
T Consensus 85 ~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~ 128 (153)
T 3i5g_B 85 DALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWK 128 (153)
T ss_dssp HHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHT
T ss_pred HHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHH
Confidence 33333334443 456899999888888877 66777776663
No 242
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=60.25 E-value=11 Score=23.10 Aligned_cols=48 Identities=21% Similarity=0.081 Sum_probs=35.2
Q ss_pred CCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 86 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
.+++.+..+|.-.+.. ....++|..+|++...|+.+..+-+.|-+...
T Consensus 21 ~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 4788888888774332 24568999999999999999876666554433
No 243
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=59.66 E-value=6.8 Score=28.97 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.3
Q ss_pred HHHHHHHcCCChhhhhhhhhh
Q psy10486 51 RWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~n 71 (183)
..+||..+|++...|..|..+
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 357999999999999999866
No 244
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=59.12 E-value=18 Score=21.09 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=35.1
Q ss_pred CCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 84 r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
-..+++.+..+|.-.+... ...++|..+|++...|+.+..+-+.+-+.
T Consensus 9 ~~~L~~~e~~il~~~~~g~------s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLVQDK------TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 3458888888887743222 45689999999999999998765555443
No 245
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=58.77 E-value=8.5 Score=24.10 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=17.6
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|..+
T Consensus 21 ~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 21 QQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp HHHHHHHCCCHHHHHHHTTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 56999999999999999866
No 246
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=58.37 E-value=19 Score=23.08 Aligned_cols=46 Identities=17% Similarity=-0.041 Sum_probs=34.7
Q ss_pred CCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHH
Q psy10486 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKN 135 (183)
Q Consensus 84 r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~ 135 (183)
...+++.+..+|.-.+... ...++|..+|++...|+.+..+=+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4568899998887755332 347899999999999999987655544
No 247
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=58.28 E-value=79 Score=26.21 Aligned_cols=103 Identities=13% Similarity=0.002 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHhhh---------cCCCCHHHHHHHHHHcCCChhhhhhhhhhcccccc----------ccc-c--ccCC
Q psy10486 28 YSKHQTLELEKEFLY---------NAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQ----------VTV-R--KKRK 85 (183)
Q Consensus 28 ft~~Ql~~Le~~F~~---------~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~----------~~~-r--r~r~ 85 (183)
+|+.|.+..+.++.. ....-......+|..+|++.+.|..|....+...+ ... + ....
T Consensus 23 l~~~~~~~A~~r~~~i~~v~~l~~~g~~~~~a~~~~a~~~gvS~~Tl~rW~~~y~~~~~~~gl~~L~~~~~~~~~~~~~~ 102 (529)
T 4fcy_A 23 ASDSQRRLAEKWLPAVQAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKS 102 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSCGGGHHHHHC------------C
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcccCceecccCCCCCCCCCCcC
Confidence 566666655544332 22222333456899999999999999865432111 111 1 1123
Q ss_pred CCChhHHHHHHHccccCCccCHHHH----HHHHHHhCC---ChhhHHHHHhh
Q psy10486 86 PYSKHQTLELEKEFLYNAYVSKQKR----WELARSLML---TERQVKIWFQN 130 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~~~~p~~~~~----~~La~~l~l---~~~~V~~WF~n 130 (183)
.+.++-...+...|.....|+.... ...+..-|+ +...|..|...
T Consensus 103 ~~~~~~~~~i~~~yl~~~~~s~~~~~~~~~~~~~~~g~~~PS~~tv~r~l~~ 154 (529)
T 4fcy_A 103 EFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQ 154 (529)
T ss_dssp CCCHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 4677777778888888888887643 334455564 56777777753
No 248
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=57.99 E-value=12 Score=20.74 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhh
Q psy10486 30 KHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQ 70 (183)
Q Consensus 30 ~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~ 70 (183)
+++...+...+... + + ..+||..+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~~g-~-s---~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y-T---VQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C-C---HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHH
Confidence 66666666655432 2 2 35799999999999999874
No 249
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=57.67 E-value=13 Score=23.07 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhhh
Q psy10486 27 PYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLMLTERQVKIWFQ 70 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WF~ 70 (183)
.++.++...+...|.. +-+++..+...+...+|++...+...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4688999999999976 4568888888877888988877776554
No 250
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=57.44 E-value=17 Score=25.91 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=31.4
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCC-ccCHHHHHHHHHHhCCChh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNA-YVSKQKRWELARSLMLTER 122 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~-~p~~~~~~~La~~l~l~~~ 122 (183)
.+||..+|++...|..|-.+ .. .|+......||..+|++..
T Consensus 27 ~~la~~~gis~~~ls~~e~g------------------------------~~~~p~~~~l~~ia~~l~~~~~ 68 (198)
T 2bnm_A 27 AALASLLGETPETVAAWENG------------------------------EGGELTLTQLGRIAHVLGTSIG 68 (198)
T ss_dssp HHHHHHHTCCHHHHHHHHTT------------------------------TCTTCBHHHHHHHHHHTTSCTG
T ss_pred HHHHHHHCcCHHHHHHHHcC------------------------------CCCCCCHHHHHHHHHHhCCCHH
Confidence 56899999998888888766 22 3666777888999988764
No 251
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=57.08 E-value=30 Score=20.94 Aligned_cols=47 Identities=9% Similarity=0.035 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 25 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
...+|.++...|+.....-+--+..--+.||..+|=+..+|..-|+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~ 54 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 34699999999999988744212233456899999999999876654
No 252
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=57.04 E-value=13 Score=25.50 Aligned_cols=43 Identities=7% Similarity=0.106 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 27 PYSKHQTLELEKEFLY----NAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~~----~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
.+|..++.+|...+.. .++|+.. .||..+|++...|....++-
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L 75 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMF 75 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHH
Confidence 3678888888777663 6788885 49999999999999888874
No 253
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=56.75 E-value=22 Score=23.93 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=33.0
Q ss_pred CChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 87 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 87 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
+++.+..++. .|-.. ....++|..+|++...|+.+...-+.+-|+..
T Consensus 110 L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 110 FSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp SCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 6677777776 33222 24668999999999999999876665555444
No 254
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=56.47 E-value=19 Score=22.63 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=31.6
Q ss_pred CCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHH
Q psy10486 86 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~r 136 (183)
.+++.+..+|.-.+... ...++|..+|++...|+.+..+-+.|-+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 36677777776643332 3468999999999999998875555543
No 255
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=56.23 E-value=25 Score=23.03 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=34.4
Q ss_pred CChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 87 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 87 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
+++.+..++.-.|...- ...++|..+|++...|+.+...-+.+-++..
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 56666677666543331 4568899999999999999987776666543
No 256
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=55.69 E-value=73 Score=26.42 Aligned_cols=106 Identities=21% Similarity=0.266 Sum_probs=63.1
Q ss_pred CCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCC--Chhhhhhhhhhccccccc----------cccccCCC
Q psy10486 24 KRKPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLML--TERQVKIWFQNIEWTGQV----------TVRKKRKP 86 (183)
Q Consensus 24 ~r~~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WF~nrr~k~~~----------~~rr~r~~ 86 (183)
.+..|+++|+..|...|.. +-+++..|...+...||+ +..+|..-|..-...... ........
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~~~D~DgDG~IdFeEFl~lms~~lk~~ 371 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLIMMARKMKDT 371 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCSSSEEHHHHHHHHHTC----
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCC
Confidence 3568999999999999964 566889998887788775 456676666532111100 00000111
Q ss_pred CChhHHHHHHHccc--cCCccCHHHHHHHHHHhC--CChhhHHHHHh
Q psy10486 87 YSKHQTLELEKEFL--YNAYVSKQKRWELARSLM--LTERQVKIWFQ 129 (183)
Q Consensus 87 ~t~~q~~~Le~~F~--~~~~p~~~~~~~La~~l~--l~~~~V~~WF~ 129 (183)
.+.+.+..+-..|. .+-+++..+...+...+| ++...|...|.
T Consensus 372 d~eeeLreAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeLfk 418 (440)
T 3u0k_A 372 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR 418 (440)
T ss_dssp --CHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 12222222222332 355788888888888776 66777776663
No 257
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=55.67 E-value=9 Score=23.03 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.6
Q ss_pred HHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 110 RWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 110 ~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
..+||..+|++...|..|..+++.-
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~~p 38 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGRVP 38 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCC
Confidence 5689999999999999999887643
No 258
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=55.48 E-value=6.7 Score=23.86 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=18.9
Q ss_pred HHHHHHHcCCChhhhhhhhhh
Q psy10486 51 RWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~n 71 (183)
..+||..||++..-|..|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 568999999999999999865
No 259
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=55.21 E-value=38 Score=21.64 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=17.8
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|-.+
T Consensus 53 ~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 53 AELGKEIGETAATVASYERG 72 (107)
T ss_dssp HHHHHHHTCCHHHHHHHTTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 56999999999999999866
No 260
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=55.17 E-value=17 Score=22.46 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=34.2
Q ss_pred CCChhHHHHHHHccccC--CccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 86 PYSKHQTLELEKEFLYN--AYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~~--~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
.+++.+..+|.-.|... .-. ...++|..+|++...|+.+...-+.+-+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 36777778887776411 112 35588999999999999998766555544
No 261
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=54.71 E-value=43 Score=24.95 Aligned_cols=67 Identities=7% Similarity=0.045 Sum_probs=39.2
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHh-CCChhhHHHHHhh
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSL-MLTERQVKIWFQN 130 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l-~l~~~~V~~WF~n 130 (183)
.++|+.+|++...|+.|=..---............|+..++..|. .......+ |++...|+..+..
T Consensus 4 gevA~~~Gvs~~TLRyYE~~GLl~p~~R~~~gyR~Y~~~dl~~L~-------------~I~~lr~~~G~sL~eIk~~l~~ 70 (222)
T 2dg6_A 4 ADLSKRSGVSTATIKYYLREGLLPPGRQVNATTAEYDEDHLRRLR-------------LVRALIQVGKVPVATAREVLGH 70 (222)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTSSCCC---------CCHHHHHHHH-------------HHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCeeCCCCceeeCHHHHHHHH-------------HHHHHHHcCCCCHHHHHHHHHh
Confidence 468999999999999996542111111112334568888888773 22334455 7777777777754
Q ss_pred h
Q psy10486 131 R 131 (183)
Q Consensus 131 r 131 (183)
.
T Consensus 71 ~ 71 (222)
T 2dg6_A 71 V 71 (222)
T ss_dssp H
T ss_pred h
Confidence 3
No 262
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=53.42 E-value=18 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=39.3
Q ss_pred cccCCCCChhHHHHHHHcc-ccCCccCHHHHHHHH-HHh--CCChhhHHHHHhh
Q psy10486 81 RKKRKPYSKHQTLELEKEF-LYNAYVSKQKRWELA-RSL--MLTERQVKIWFQN 130 (183)
Q Consensus 81 rr~r~~~t~~q~~~Le~~F-~~~~~p~~~~~~~La-~~l--~l~~~~V~~WF~n 130 (183)
+++|..+|.+|...+-..+ +.++..+..+....| ..+ +++...|..|..+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5678899999999999999 778877776555532 367 8899999999865
No 263
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=52.94 E-value=5.5 Score=28.21 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 31 HQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 31 ~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
.-+++....|....|-. .....||+..|++...+..+|.++
T Consensus 35 ~Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK 75 (218)
T 3dcf_A 35 QIIKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSK 75 (218)
T ss_dssp HHHHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCH
Confidence 33455666688888754 333679999999999999999885
No 264
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=51.91 E-value=37 Score=23.60 Aligned_cols=44 Identities=9% Similarity=0.060 Sum_probs=28.4
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELE 96 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le 96 (183)
.++|+.+|++.+.|+.|=..---. ........+.|+..++..|.
T Consensus 15 ~e~A~~~gvs~~TLR~ye~~Gll~-p~r~~~g~R~Y~~~dl~~l~ 58 (154)
T 2zhg_A 15 GEVAKRSGVAVSALHFYESKGLIT-SIRNSGNQRRYKRDVLRYVA 58 (154)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTSSC-CEECTTSCEEBCTTHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCC-cccCCCCCEEeCHHHHHHHH
Confidence 468999999999999996542111 11112234458888877764
No 265
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=51.78 E-value=35 Score=20.14 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=17.9
Q ss_pred HHHHHHHcCCChhhhhhhhhh
Q psy10486 51 RWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~n 71 (183)
...||..+|++...|..++.+
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~ 32 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMN 32 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTC
T ss_pred HHHHHHHHCCCHHHHHHHHcC
Confidence 467899999999999998876
No 266
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=51.37 E-value=2.5 Score=32.73 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=25.6
Q ss_pred cccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 99 FLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 99 F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
|....|- ......||...|++...|..+|.++-.-
T Consensus 133 ~~~~G~~-~~T~~~IA~~AGvs~gtlY~yF~sKe~L 167 (311)
T 4ich_A 133 IARRGYH-NVRIHDIASELGTSNATIHYHFPSKKDI 167 (311)
T ss_dssp HHHHCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHcCCc-cCCHHHHHHHhCCCchhHHHhCCCHHHH
Confidence 4444332 2346688999999999999999887653
No 267
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=49.57 E-value=40 Score=25.49 Aligned_cols=45 Identities=18% Similarity=0.040 Sum_probs=29.3
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELE 96 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le 96 (183)
.++|..+||+.+.|+.|=..---+..+......+.++..++..|.
T Consensus 7 ~evA~~~gvs~~TLRyYe~~GLL~p~~~~~~GyR~Y~~~dl~~L~ 51 (249)
T 3qao_A 7 KELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQ 51 (249)
T ss_dssp HHHHHHHCCCHHHHHHHHHTTSSCCEECTTTCCEEBCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCceECCCCCeeeCHHHHHHHH
Confidence 468999999999999997631111111112334568888888773
No 268
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=49.00 E-value=20 Score=23.76 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=14.8
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
.+||..+|++...|..|..+
T Consensus 57 ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 57 AAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 45788888888777777754
No 269
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=48.46 E-value=44 Score=21.94 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC--CChhhhhhhhhhccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLM--LTERQVKIWFQNIEW 74 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~--l~~~qV~~WF~nrr~ 74 (183)
..+++++...+... ..++..+.. +|+..|| ++...|..|+.....
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~~---~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTAR---DIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCHH---HHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHH-HhCCCCCHH---HHHHHHCCCccHHHHHHHHHHCCC
Confidence 35788888877776 566666653 5788888 788999999976433
No 270
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=48.28 E-value=9.2 Score=22.09 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=17.3
Q ss_pred HHHHHHHcCCChhhhhhhh
Q psy10486 51 RWELARSLMLTERQVKIWF 69 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF 69 (183)
..+||..+|++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3679999999999999998
No 271
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=45.97 E-value=68 Score=21.81 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHhhh-------cCCCCHHHHHHHHHHcCCC--hhhhhhhhhhccccccc-----------cccccCCC
Q psy10486 27 PYSKHQTLELEKEFLY-------NAYVSKQKRWELARSLMLT--ERQVKIWFQNIEWTGQV-----------TVRKKRKP 86 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~~-------~~~p~~~~~~~La~~l~l~--~~qV~~WF~nrr~k~~~-----------~~rr~r~~ 86 (183)
.+|++|+..|..+|.. +-+++..+...+...||+. ...|...+..-...... ........
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~ 81 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTG 81 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHcccccCCCcccHHHHHHHHHHhhccccc
Confidence 4799999999999863 2478888888877888864 45565443221100000 00011112
Q ss_pred CChhHHHHHHHcc--ccCCccCHHHHHHHHHHhC--CChhhHHHHH
Q psy10486 87 YSKHQTLELEKEF--LYNAYVSKQKRWELARSLM--LTERQVKIWF 128 (183)
Q Consensus 87 ~t~~q~~~Le~~F--~~~~~p~~~~~~~La~~l~--l~~~~V~~WF 128 (183)
.+.+.+...-..| ..+.+++..+...+...+| ++...|...|
T Consensus 82 ~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~ 127 (159)
T 3i5g_C 82 TAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIF 127 (159)
T ss_dssp CCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 2223232222333 3456899998888888887 5666776666
No 272
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=45.39 E-value=32 Score=24.82 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=34.6
Q ss_pred CCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 86 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
.+++.+..+|.-.|... -...++|..+|++...|+.+...-+.+-|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 46677777776665332 2456889999999999999987666665554
No 273
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=44.95 E-value=18 Score=22.60 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhhh
Q psy10486 28 YSKHQTLELEKEFLY-----NAYVSKQKRWELARSLMLTERQVKIWFQ 70 (183)
Q Consensus 28 ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WF~ 70 (183)
++.++...|...|.. +-+++..+...+...+|++...+..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 577889999999865 4568888888887888998888877665
No 274
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=44.60 E-value=21 Score=23.77 Aligned_cols=37 Identities=5% Similarity=-0.017 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 28 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 28 ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
++.+++..|......+ ..+||..+|++...|..|-.+
T Consensus 71 ~~~~~l~~~R~~~gls-------q~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 71 VAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp CCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCC-------HHHHHHHHCCCHHHHHHHHCC
Confidence 4555555555444322 246888888888888888866
No 275
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=44.26 E-value=9.7 Score=27.62 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=32.7
Q ss_pred CCCCHH-HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 26 KPYSKH-QTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 26 ~~ft~~-Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
...+.+ -+++....|...-|-. .....||..+|++...|...|.++
T Consensus 23 ~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K 69 (211)
T 3fiw_A 23 TKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTK 69 (211)
T ss_dssp -CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSH
T ss_pred cccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCH
Confidence 334444 4556666788877643 233579999999999999999885
No 276
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=44.01 E-value=39 Score=22.51 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=15.6
Q ss_pred ccCHHHHHHHHHHhCCChh
Q psy10486 104 YVSKQKRWELARSLMLTER 122 (183)
Q Consensus 104 ~p~~~~~~~La~~l~l~~~ 122 (183)
.|+......||..+|++..
T Consensus 56 ~Ps~~~l~~iA~~f~V~~~ 74 (123)
T 3qwg_A 56 NPSGATMAALANFFRIKAA 74 (123)
T ss_dssp CCCHHHHHHHHHHTTSCTH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 5778888889999998874
No 277
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=43.36 E-value=35 Score=23.74 Aligned_cols=30 Identities=13% Similarity=-0.016 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 109 KRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 109 ~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
...++|..+|++...|+.+...-+.+-|+.
T Consensus 158 s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999997766666554
No 278
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=43.28 E-value=51 Score=24.72 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=26.4
Q ss_pred HHHHHHcCCChhhhhhhhhhcccccccc-ccccCCCCChhHHHHH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVT-VRKKRKPYSKHQTLEL 95 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~-~rr~r~~~t~~q~~~L 95 (183)
.++|+.+|++.+.++.|=..---+.... .....+.++..++..|
T Consensus 9 ~e~a~~~gvs~~tlr~y~~~gll~p~~~d~~~g~R~y~~~~~~~l 53 (278)
T 1r8e_A 9 GEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHL 53 (278)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCccccCHHHHHHH
Confidence 4689999999999999954311111111 1123345677766665
No 279
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=42.52 E-value=16 Score=21.47 Aligned_cols=21 Identities=19% Similarity=0.348 Sum_probs=18.6
Q ss_pred HHHHHHHcCCChhhhhhhhhh
Q psy10486 51 RWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~n 71 (183)
..++|..||++...|..|-..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 357899999999999999876
No 280
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=42.26 E-value=25 Score=19.63 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=23.3
Q ss_pred HHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 110 RWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 110 ~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
..++|..+|++...|+.+..+=+.|-+...
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 357899999999999999876666554443
No 281
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=41.76 E-value=63 Score=20.27 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=36.6
Q ss_pred CCCCChhHHHHHHHccc-----cCCccCHHHHHHHHHHhC--CChhhHHHHHh
Q psy10486 84 RKPYSKHQTLELEKEFL-----YNAYVSKQKRWELARSLM--LTERQVKIWFQ 129 (183)
Q Consensus 84 r~~~t~~q~~~Le~~F~-----~~~~p~~~~~~~La~~l~--l~~~~V~~WF~ 129 (183)
...++.++...|...|. .+-+++..+...+...+| ++...|..+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45688999999998884 466899999999888887 56777777774
No 282
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=41.66 E-value=59 Score=19.90 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC-CChhhhhhhhhh
Q psy10486 18 QVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLM-LTERQVKIWFQN 71 (183)
Q Consensus 18 ~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~-l~~~qV~~WF~n 71 (183)
+.+....+..+|.+.-..|...... |. ..-..||..++ =+..||..-|.+
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~--~G--~~W~~IA~~v~~RT~~qcr~r~~~ 61 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEM--YK--DDWNKVSEHVGSRTQDECILHFLR 61 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHH--SS--SCHHHHHHHHSSCCHHHHHHHHTT
T ss_pred CccccccCCCcCHHHHHHHHHHHHH--hC--CCHHHHHHHcCCCCHHHHHHHHHH
Confidence 3444555778999999999998887 44 34567888885 678888766555
No 283
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=41.00 E-value=19 Score=22.28 Aligned_cols=47 Identities=17% Similarity=-0.025 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHH
Q psy10486 86 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~ 138 (183)
.+++.+..+|.-.+... ...++|..+|++...|+.+..+-+.|-+..
T Consensus 29 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 29 MLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 36777777776643222 344789999999999999987666655443
No 284
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=40.26 E-value=47 Score=21.85 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=54.3
Q ss_pred CHHHHHHH---HHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhH----HHHHHHcccc
Q psy10486 29 SKHQTLEL---EKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQ----TLELEKEFLY 101 (183)
Q Consensus 29 t~~Ql~~L---e~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q----~~~Le~~F~~ 101 (183)
+++|.... ...|...+ | ....||..+|++...+..|+..-...+.-..-....-+..+. ...+...+..
T Consensus 2 ~~~~~~l~~~i~~~~~~~p-~---~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~ 77 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGDEP-W---WVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQE 77 (121)
T ss_dssp CHHHHHHHHHHGGGCSSSC-E---EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCC-C---CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHH
Confidence 44554444 44454322 2 334799999999999999987644333222211222233333 3455555666
Q ss_pred CCccCHHHHHHHHHHhCCChh---hHHHHHh
Q psy10486 102 NAYVSKQKRWELARSLMLTER---QVKIWFQ 129 (183)
Q Consensus 102 ~~~p~~~~~~~La~~l~l~~~---~V~~WF~ 129 (183)
+...+.. ++...+|++.+ +|=-+|.
T Consensus 78 ~~~it~a---e~Rd~lg~sRK~ai~lLE~~D 105 (121)
T 2pjp_A 78 CGSTCAA---DFRDRLGVGRKLAIQILEYFD 105 (121)
T ss_dssp HSSEEHH---HHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCccHH---HHHHHHCCcHHHHHHHHHHHh
Confidence 7666665 44555688888 7777774
No 285
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=39.27 E-value=24 Score=25.35 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 31 HQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 31 ~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
.-+++....|....|-.. ....||+..|++...|...|.++
T Consensus 34 ~Il~aA~~lf~~~G~~~~-t~~~IA~~Agvs~~t~Y~~F~sK 74 (230)
T 2iai_A 34 TLLSVAVQVFIERGYDGT-SMEHLSKAAGISKSSIYHHVTGK 74 (230)
T ss_dssp CHHHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHTTTCSSH
T ss_pred HHHHHHHHHHHHcCcccc-CHHHHHHHHCCChhHHHHhCCCH
Confidence 346777788988887543 33669999999999999999885
No 286
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=37.88 E-value=48 Score=22.04 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 26 KPYSKHQTLELEKEFLY----NAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~----~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
..++..++.+|...+.. .++|+.. .||..+|++...|..-...
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~---~LA~~l~~s~~~V~~~l~~ 74 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPA---ELAERMTVSAAECMEMVRR 74 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHH---HHHHTSSSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHH
Confidence 45788888888777653 4667764 5999999999998876655
No 287
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.13 E-value=92 Score=20.77 Aligned_cols=44 Identities=7% Similarity=-0.053 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHc--------C--CChhhhhhhhhh
Q psy10486 25 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSL--------M--LTERQVKIWFQN 71 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l--------~--l~~~qV~~WF~n 71 (183)
...+++++...+......++..+..+ |+..| | ++...|..|+..
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~---i~~~l~~~~~~~~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWE---IRDRLLAERVCDNDTVPSVSSINRIIRT 141 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHH---HHHHHHHTTSSCTTTSCCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHH---HHHHHHHhcccccCCCcCHHHHHHHHHH
Confidence 34688999999999888887777654 44444 5 778889999865
No 288
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.97 E-value=90 Score=20.37 Aligned_cols=50 Identities=14% Similarity=-0.009 Sum_probs=34.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHH-HHHHHHcCCChhhhhhhhh
Q psy10486 20 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKR-WELARSLMLTERQVKIWFQ 70 (183)
Q Consensus 20 ~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~-~~La~~l~l~~~qV~~WF~ 70 (183)
++.+.+..-|.+|+..-+..+..+. |+.++. ..|+..+|+++..+..=..
T Consensus 12 ~~~~~~~~aTaeQ~rLAq~i~~~~d-~d~eekVk~L~EmtG~seeeAr~AL~ 62 (104)
T 1wj7_A 12 TQHKQRPQATAEQIRLAQMISDHND-ADFEEKVKQLIDITGKNQDECVIALH 62 (104)
T ss_dssp CTTCCSSSSSHHHHHHHHHHHHSCC-HHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CccccccccCHHHHHHHHHHhcCCc-ccHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 4444556779999999888876643 554444 5677778999988765443
No 289
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=35.16 E-value=81 Score=24.45 Aligned_cols=48 Identities=23% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWF 128 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF 128 (183)
++||..+|++...|..|=+++ ...|+......||..++++.......|
T Consensus 29 eelA~~~gvS~~~is~iE~G~-----------------------------~~~ps~~~l~~lA~aL~v~~~er~~L~ 76 (292)
T 3pxp_A 29 EVLAERTQLPKRTIERIENGS-----------------------------LAHLDADILLRLADALELTIGERREFF 76 (292)
T ss_dssp HHHHHHHTCCHHHHHHHHHTC-----------------------------CSCCCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCC-----------------------------CCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 567778887777666554331 124677788888888888887755555
No 290
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=34.92 E-value=76 Score=20.09 Aligned_cols=46 Identities=4% Similarity=-0.162 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCC-------Chhhhhhhhhh
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLML-------TERQVKIWFQN 71 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l-------~~~qV~~WF~n 71 (183)
..+++++...+......++..+..+........|+ +...|..|+..
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 46788788888888888777776554332222274 77888888753
No 291
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=34.83 E-value=1.1e+02 Score=20.99 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHhhhcC--CCCHHHHHH
Q psy10486 25 RKPYSKHQTLELEKEFLYNA--YVSKQKRWE 53 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~~~--~p~~~~~~~ 53 (183)
...+|..||.....-|-.+. |-...|...
T Consensus 30 ~~~~Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ 60 (137)
T 2ksn_A 30 DYPMTDGQLRSKRDEFWDTAPAFEGRKEIWD 60 (137)
T ss_dssp SSCCSHHHHHHHHHHHHTTSSTTCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCccCCCHHHHH
Confidence 34799999999999999998 888777753
No 292
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=34.72 E-value=31 Score=25.44 Aligned_cols=44 Identities=14% Similarity=-0.010 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccc
Q psy10486 25 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEW 74 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~ 74 (183)
...+|+.+.++|.-.++- + + -.+||..||+++..|+.+..+-+.
T Consensus 173 ~~~Lt~~e~~vl~~~~~g--~-s---~~eIa~~l~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKG--K-T---ASVTANLTGINARTVQHYLDKARA 216 (236)
T ss_dssp GGSCCHHHHHHHHHHHTT--C-C---HHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC--C-C---HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356999999999775432 2 2 256999999999999998877443
No 293
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=34.03 E-value=39 Score=23.06 Aligned_cols=47 Identities=9% Similarity=-0.044 Sum_probs=32.0
Q ss_pred CCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 86 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 86 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
.+++.+..+|.-.|... -...++|..+|++...|+.....-|.+-|+
T Consensus 93 ~Lp~~~r~vl~L~~~~g-----~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEG-----FSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTTSSSC-----CCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35666666665544332 245689999999999999988755555443
No 294
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=33.81 E-value=73 Score=18.64 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCC--Chhh---hhhhhh
Q psy10486 26 KPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLML--TERQ---VKIWFQ 70 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~q---V~~WF~ 70 (183)
..++++++..|...|.. +-+++..+...+...+|. +... |..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45788899999999865 457888888888777774 4455 555554
No 295
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.63 E-value=1.5 Score=31.20 Aligned_cols=30 Identities=7% Similarity=-0.061 Sum_probs=22.0
Q ss_pred cccccCCCCChhHHHHHHHccccCCccCHH
Q psy10486 79 TVRKKRKPYSKHQTLELEKEFLYNAYVSKQ 108 (183)
Q Consensus 79 ~~rr~r~~~t~~q~~~Le~~F~~~~~p~~~ 108 (183)
..++.++.++..|+..|++.|..+++|+..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 456778899999999999999999998754
No 296
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=33.63 E-value=69 Score=21.26 Aligned_cols=20 Identities=15% Similarity=0.003 Sum_probs=16.5
Q ss_pred HHHHHHcCCChhhhhhhhhh
Q psy10486 52 WELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~n 71 (183)
++||..+|++...|..|=.+
T Consensus 20 ~elA~~~gis~~~is~iE~g 39 (130)
T 3fym_A 20 TELEQRTGIKREMLVHIENN 39 (130)
T ss_dssp HHHHHHHCCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHCC
Confidence 46899999999888888765
No 297
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=33.18 E-value=1.1e+02 Score=20.63 Aligned_cols=50 Identities=6% Similarity=-0.110 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHH-HHHH------cCCChhhhhhhhhhccc
Q psy10486 25 RKPYSKHQTLELEKEFLYNAYVSKQKRWE-LARS------LMLTERQVKIWFQNIEW 74 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~-La~~------l~l~~~qV~~WF~nrr~ 74 (183)
...+++++...+......++..+..+... |... ..++...|..|+...+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 34678888888888888777777665433 3222 24788899999876443
No 298
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=32.83 E-value=32 Score=24.25 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCC----HHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 25 RKPYSKHQTLELEKEFLYNAYVS----KQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~~~~p~----~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
+..||.++.......-...-.|. .....++|..||++...+..|-..
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 45589998888654322221111 123467999999999999999863
No 299
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=32.82 E-value=15 Score=25.49 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=31.3
Q ss_pred HHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 92 TLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 92 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
+......|....| . .....||...|++...|..+|.++-.-
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 3444455666666 4 678899999999999999999886543
No 300
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=32.79 E-value=96 Score=20.07 Aligned_cols=49 Identities=8% Similarity=-0.037 Sum_probs=32.9
Q ss_pred HHHHHHcCCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHccccCCccC----HHHHHHHHHHhCCChhhHHHH
Q psy10486 52 WELARSLMLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVS----KQKRWELARSLMLTERQVKIW 127 (183)
Q Consensus 52 ~~La~~l~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F~~~~~p~----~~~~~~La~~l~l~~~~V~~W 127 (183)
.+||..+|++...|..|=.+.+ ++.|. ......||..||++...+-.-
T Consensus 24 ~eLA~~~gis~~~is~iE~G~~----------------------------~~~p~~~~~~~~l~~iA~~Lgv~~~~L~~~ 75 (112)
T 2wus_R 24 LDASLFTNINPSKLKRIEEGDL----------------------------KGLDAEVYIKSYIKRYSEFLELSPDEMLKL 75 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHTCC----------------------------TTSSCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCC----------------------------CCCcchhHHHHHHHHHHHHhCcCHHHHHHH
Confidence 5688889988888887765522 11222 234667899999998776544
Q ss_pred H
Q psy10486 128 F 128 (183)
Q Consensus 128 F 128 (183)
|
T Consensus 76 ~ 76 (112)
T 2wus_R 76 Y 76 (112)
T ss_dssp H
T ss_pred H
Confidence 4
No 301
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=32.00 E-value=30 Score=21.00 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHhhhcC---CCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 29 SKHQTLELEKEFLYNA---YVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 29 t~~Ql~~Le~~F~~~~---~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
+.++-..+......+. ..+. .+||..||++...|......-
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~---~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTA---HDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEH---HHHHHHHCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCH---HHHHHHHCcCHHHHHHHHHHH
Confidence 3344334445566665 4444 569999999999998877653
No 302
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=31.32 E-value=86 Score=20.54 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHhhh------cCCCCHHHHHHHHHHcC--CChhhhhhhhhh
Q psy10486 26 KPYSKHQTLELEKEFLY------NAYVSKQKRWELARSLM--LTERQVKIWFQN 71 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~------~~~p~~~~~~~La~~l~--l~~~qV~~WF~n 71 (183)
..++++++..|...|.. +-+++..+...+...+| ++...|..+|..
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 63 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDE 63 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45899999999999865 55788888888877777 456667777754
No 303
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=31.14 E-value=37 Score=21.28 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCChhhhhhhhhh
Q psy10486 50 KRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 50 ~~~~La~~l~l~~~qV~~WF~n 71 (183)
...+||..+|++++.+...|..
T Consensus 21 ~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 21 TLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4467999999999999999976
No 304
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=31.08 E-value=28 Score=24.08 Aligned_cols=41 Identities=10% Similarity=-0.024 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 30 KHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 30 ~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
..-+++-...|...-| . .....||+..|++...|...|.++
T Consensus 18 ~~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK 58 (194)
T 2q24_A 18 DKILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTR 58 (194)
T ss_dssp HHHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCH
Confidence 3445666667999888 5 677889999999999999999884
No 305
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=31.01 E-value=1.3e+02 Score=20.80 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=61.3
Q ss_pred CCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCC--Chhhhhhhhhhccccccc--------cccccCCCCCh
Q psy10486 25 RKPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLML--TERQVKIWFQNIEWTGQV--------TVRKKRKPYSK 89 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WF~nrr~k~~~--------~~rr~r~~~t~ 89 (183)
...++..++..|...|.. +-+++..+...+...+|+ +...|...|... .+.- ...........
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~--~g~i~~~eF~~~~~~~~~~~~~~ 125 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA--PGPINFTMFLTIFGDRIAGTDEE 125 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTS--SSCCBHHHHHHHHHHCCCSSCCH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHc--cCCCcHHHHHHHHHHHhcCCCcH
Confidence 346899999999999986 457899998887777764 445566555432 0000 00000111222
Q ss_pred hHHHHHHHccc--cCCccCHHHHHHHHHHhC--CChhhHHHHHh
Q psy10486 90 HQTLELEKEFL--YNAYVSKQKRWELARSLM--LTERQVKIWFQ 129 (183)
Q Consensus 90 ~q~~~Le~~F~--~~~~p~~~~~~~La~~l~--l~~~~V~~WF~ 129 (183)
..+..+-..|. .+.+++..+...+. .+| ++...|...|.
T Consensus 126 ~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~l~~ 168 (196)
T 3dtp_E 126 DVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQALS 168 (196)
T ss_dssp HHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHHHHH
Confidence 33333333343 34578888888877 887 67777777763
No 306
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=30.77 E-value=22 Score=24.88 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=30.2
Q ss_pred HHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhh
Q psy10486 93 LELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRM 133 (183)
Q Consensus 93 ~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~ 133 (183)
......|....| . .....||...|++...|..+|.++-.
T Consensus 20 ~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 20 EVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 334445666666 4 67889999999999999999988654
No 307
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=30.65 E-value=52 Score=19.29 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcC-CChhhhhhhhh
Q psy10486 27 PYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLM-LTERQVKIWFQ 70 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~-l~~~qV~~WF~ 70 (183)
.+++++...|...|.. +-+++..+...+...+| ++...|...|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5788899999999865 34577777766666565 44455555554
No 308
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=30.58 E-value=17 Score=23.67 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhhh
Q psy10486 25 RKPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLMLTERQVKIWFQ 70 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WF~ 70 (183)
...++.++...+...|.. +-+++..+...+...+|++...|..++.
T Consensus 13 ~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 13 PWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp SCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345788888889998876 3457777776666666777666665553
No 309
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=30.41 E-value=74 Score=22.40 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=18.5
Q ss_pred cccCCccCHHHHHHHHHHhCCChhhHH
Q psy10486 99 FLYNAYVSKQKRWELARSLMLTERQVK 125 (183)
Q Consensus 99 F~~~~~p~~~~~~~La~~l~l~~~~V~ 125 (183)
+.....++.+....|+..|||+...+.
T Consensus 47 ~lGQ~~ls~e~A~kLa~~LgL~~e~~~ 73 (156)
T 1dw9_A 47 LLGQQALPADAARLVGAKLDLDEDSIL 73 (156)
T ss_dssp HTTSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHhCcCHHHHH
Confidence 334556777777778888888876644
No 310
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=30.35 E-value=1.2e+02 Score=20.03 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=60.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHc-CCChhhhhhhhhhccccccccccccCCCCChhHHHHHHHcc
Q psy10486 21 VRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSL-MLTERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEF 99 (183)
Q Consensus 21 ~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l-~l~~~qV~~WF~nrr~k~~~~~rr~r~~~t~~q~~~Le~~F 99 (183)
...+|..||++.-..|......... .-..||..+ |-+..|+...+.|.-. ....+..+|.++...|...+
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l~-----p~~~~~~WT~eEd~~L~~~v 77 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNYLA-----PSISHTPWTAEEDALLVQKI 77 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHHTS-----TTSCCSCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhhcc-----cccccccCCHHHHHHHHHHH
Confidence 3455678999999999998877432 356788888 7788888754444221 12234579999888887765
Q ss_pred ccCCccCHHHHHHHHHHh-CCChhhHHHHH
Q psy10486 100 LYNAYVSKQKRWELARSL-MLTERQVKIWF 128 (183)
Q Consensus 100 ~~~~~p~~~~~~~La~~l-~l~~~~V~~WF 128 (183)
.... .. =..+|..+ |=+..+|++-|
T Consensus 78 ~~~G-~~---W~~Ia~~l~gRt~~~~k~rw 103 (126)
T 3osg_A 78 QEYG-RQ---WAIIAKFFPGRTDIHIKNRW 103 (126)
T ss_dssp HHHC-SC---HHHHHTTSTTCCHHHHHHHH
T ss_pred HHHC-cC---HHHHHHHcCCCCHHHHHHHH
Confidence 4322 11 22345555 56666666655
No 311
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=30.12 E-value=86 Score=20.00 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHcCCChhhhhhhh
Q psy10486 26 KPYSKHQTLELEKEFLY----NAYVSKQKRWELARSLMLTERQVKIWF 69 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~----~~~p~~~~~~~La~~l~l~~~qV~~WF 69 (183)
..++.++...+...|.. +-+++..+...+-..+|++...+...+
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 35788999999999975 456888888777777888877776544
No 312
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=29.76 E-value=74 Score=20.90 Aligned_cols=40 Identities=5% Similarity=-0.027 Sum_probs=28.0
Q ss_pred CChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhh
Q psy10486 87 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRM 133 (183)
Q Consensus 87 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~ 133 (183)
++.+.+..+......+ ..+||..+|++...|..|-.+++.
T Consensus 71 ~~~~~l~~~R~~~gls-------q~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 71 VAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp CCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcCCC-------HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 4555555555444332 447899999999999999987653
No 313
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=29.58 E-value=64 Score=18.78 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcC--CChhhhhhhhh
Q psy10486 26 KPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLM--LTERQVKIWFQ 70 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~--l~~~qV~~WF~ 70 (183)
..++.+++..|...|.. +-+++..+...+...+| ++...|...|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45899999999999975 34577777777666666 34445555553
No 314
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=29.56 E-value=71 Score=18.93 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCC--Chhhhhhhhh
Q psy10486 27 PYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLML--TERQVKIWFQ 70 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WF~ 70 (183)
.++.+++..|...|.. +-+++..+...+...+|+ +...|...|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4789999999999965 356888888777777764 3455555553
No 315
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=29.46 E-value=76 Score=21.38 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=31.2
Q ss_pred cCCCCChhHHHHHHHccc-----cCCccCHHHHHHHHHHhCCChh
Q psy10486 83 KRKPYSKHQTLELEKEFL-----YNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 83 ~r~~~t~~q~~~Le~~F~-----~~~~p~~~~~~~La~~l~l~~~ 122 (183)
++..+|.+|+..|...|. .+.+++..+...+...+|+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 355799999999999984 4567888888888888886554
No 316
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=29.28 E-value=55 Score=20.13 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=24.5
Q ss_pred HHHHhhhcC---CCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 36 LEKEFLYNA---YVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 36 Le~~F~~~~---~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
+...+..+. ..+. .+||..||++...|...+..-
T Consensus 15 IL~~L~~~~pg~~~t~---~eLA~~Lgvsr~tV~~~L~~L 51 (81)
T 1qbj_A 15 ILKFLEELGEGKATTA---HDLSGKLGTPKKEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHCTTCCBCH---HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCH---HHHHHHHCcCHHHHHHHHHHH
Confidence 334555555 5554 459999999999999887664
No 317
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=29.16 E-value=42 Score=19.00 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=17.9
Q ss_pred HHHHHHHhCCChhhHHHHHhh
Q psy10486 110 RWELARSLMLTERQVKIWFQN 130 (183)
Q Consensus 110 ~~~La~~l~l~~~~V~~WF~n 130 (183)
..++|..+|++...|..|..+
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457899999999999999843
No 318
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=28.99 E-value=66 Score=23.56 Aligned_cols=48 Identities=17% Similarity=0.055 Sum_probs=34.4
Q ss_pred CCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 84 r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
...+++.+..+|.-..... ...++|..+|+++..|+.+..+=+.|-.-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3457888888776644322 34678999999999999998776665443
No 319
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=28.94 E-value=57 Score=19.01 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=18.5
Q ss_pred HHHHHHHcCCChhhhhhhhhh
Q psy10486 51 RWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~n 71 (183)
...||+.+|++...|..++.+
T Consensus 3 ~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 357999999999999999977
No 320
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=28.78 E-value=14 Score=27.02 Aligned_cols=39 Identities=5% Similarity=-0.061 Sum_probs=29.7
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 33 TLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 33 l~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
+++....|....|-. .....||+..|++...|...|.++
T Consensus 52 l~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK 90 (245)
T 3aqt_A 52 ITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDR 90 (245)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSH
T ss_pred HHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCH
Confidence 455556688877743 233569999999999999999885
No 321
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=28.65 E-value=27 Score=24.86 Aligned_cols=40 Identities=10% Similarity=-0.048 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 32 QTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 32 Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
-+++-...|...-|-.. ....||...|++...|...|.++
T Consensus 40 Il~aA~~lf~~~G~~~~-t~~~IA~~AGvs~~tlY~~F~sK 79 (221)
T 3g7r_A 40 LLGTATRIFYAEGIHSV-GIDRITAEAQVTRATLYRHFSGK 79 (221)
T ss_dssp HHHHHHHHHHHHCSTTS-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHCCCH
Confidence 34444555888877543 33669999999999999999885
No 322
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=28.64 E-value=40 Score=24.73 Aligned_cols=44 Identities=9% Similarity=-0.114 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhccc
Q psy10486 25 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEW 74 (183)
Q Consensus 25 r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~ 74 (183)
...+|+.+.++|.-.+.- + + -.+||..||+++..|+....+-+.
T Consensus 171 ~~~Lt~~e~~vl~~~~~g--~-s---~~eIa~~l~is~~tV~~~~~~~~~ 214 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVG--K-T---MEEIADVEGVKYNSVRVKLREAMK 214 (234)
T ss_dssp CCCCCHHHHHHHHHHTTT--C-C---HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC--C-C---HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456999999999775422 2 2 256999999999999988877443
No 323
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=28.61 E-value=36 Score=25.07 Aligned_cols=47 Identities=21% Similarity=0.133 Sum_probs=32.6
Q ss_pred CCCCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 25 RKPYSKHQ-TLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 25 r~~ft~~Q-l~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
|...+.++ +++-...|...-|-. .....||..+|++..-|...|.++
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K 73 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNK 73 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSH
T ss_pred chhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCH
Confidence 33455444 455566677777644 333569999999999999999985
No 324
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=28.45 E-value=85 Score=22.89 Aligned_cols=47 Identities=9% Similarity=-0.076 Sum_probs=34.2
Q ss_pred CCCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHH
Q psy10486 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136 (183)
Q Consensus 84 r~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~r 136 (183)
...+++.+..+|.-..... ...++|..+|+++..|+....+=+.|-.
T Consensus 171 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVGK------TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4458888888876644322 4567899999999999999876665543
No 325
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=28.45 E-value=91 Score=20.97 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=13.8
Q ss_pred ccCHHHHHHHHHHhCCChh
Q psy10486 104 YVSKQKRWELARSLMLTER 122 (183)
Q Consensus 104 ~p~~~~~~~La~~l~l~~~ 122 (183)
.|+......||..+||+..
T Consensus 58 ~Ps~~~l~~iA~~f~V~~~ 76 (135)
T 3r1f_A 58 NPSGATMAALANFFRIKAA 76 (135)
T ss_dssp CCCHHHHHHHHHHHTSCTH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 4677777778888887763
No 326
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=28.39 E-value=1.4e+02 Score=20.08 Aligned_cols=44 Identities=5% Similarity=-0.179 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhh
Q psy10486 23 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVK 66 (183)
Q Consensus 23 r~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~ 66 (183)
+.+..+|.+++..|...+.....+.......|+..+|+-...|.
T Consensus 2 ~~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E~~ 45 (170)
T 1aih_A 2 TELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAE 45 (170)
T ss_dssp CCCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHH
T ss_pred CccccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHHHH
Confidence 34568999999999999887666655555677777887765553
No 327
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=28.36 E-value=91 Score=18.07 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=39.9
Q ss_pred CChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHH
Q psy10486 87 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139 (183)
Q Consensus 87 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~ 139 (183)
++.....+|...=+.+-.....-.+.|...---++..|.++..|.|+-||-++
T Consensus 5 ls~~e~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLEN 57 (67)
T 2bnk_A 5 LSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLEN 57 (67)
T ss_dssp CCSSHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHcCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhhh
Confidence 44555666655555566667777888886666788999999999999998765
No 328
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=28.14 E-value=74 Score=19.50 Aligned_cols=42 Identities=17% Similarity=0.104 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 27 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
.++..++.+|...+....-++. .+||..+|++...|......
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~t~---~ela~~l~is~~tv~~~l~~ 59 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPITS---EELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEH---HHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCH---HHHHHHHCcCHHHHHHHHHH
Confidence 4678888898888764544444 46999999999888766554
No 329
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=28.00 E-value=1.1e+02 Score=18.71 Aligned_cols=63 Identities=6% Similarity=-0.032 Sum_probs=25.2
Q ss_pred CCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHH-HH-HcCCChhhhhhhh
Q psy10486 7 NSSSSTLEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWEL-AR-SLMLTERQVKIWF 69 (183)
Q Consensus 7 ~~s~~~~~~~~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~L-a~-~l~l~~~qV~~WF 69 (183)
+++.+......+.+.+|+.+.|.-.-.+.-...-..++-.+..+...+ +. .-.|+...-..|.
T Consensus 4 g~~~~~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~ 68 (87)
T 2e6o_A 4 GSSGGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYT 68 (87)
T ss_dssp CCCCSSCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 334443333344455565554333332222222334444444443322 11 1135554444444
No 330
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=27.37 E-value=52 Score=18.71 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCC--Chhhhhhhhh
Q psy10486 28 YSKHQTLELEKEFLY-----NAYVSKQKRWELARSLML--TERQVKIWFQ 70 (183)
Q Consensus 28 ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WF~ 70 (183)
++++++..|...|.. +-+++..+...+...+|. +...|...|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 477888999999865 346778887777777764 3444555554
No 331
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=27.36 E-value=39 Score=23.45 Aligned_cols=39 Identities=15% Similarity=-0.023 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 32 QTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 32 Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
-+++-...|...-| . .....||+..|++...|...|.++
T Consensus 18 Il~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK 56 (196)
T 2qwt_A 18 VLEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTK 56 (196)
T ss_dssp HHHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCH
Confidence 34455566888888 6 577889999999999999999885
No 332
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=27.18 E-value=12 Score=26.88 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 30 KHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 30 ~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
..-+++-...|...-|-. .....||+..|++...|...|.++
T Consensus 33 ~~Il~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sK 74 (226)
T 2pz9_A 33 QRIVAAAKEEFARHGIAG-ARVDRIAKQARTSKERVYAYFRSK 74 (226)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHhCccc-CcHHHHHHHHCCChHHHHHHcCCH
Confidence 334555666687776532 233569999999999999999885
No 333
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=26.75 E-value=26 Score=24.65 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 32 QTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 32 Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
-+++....|....|-. .....||...|++...|...|.++
T Consensus 35 Il~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK 74 (222)
T 3bru_A 35 LIRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNK 74 (222)
T ss_dssp HHHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCH
Confidence 3555556688887754 334679999999999999999884
No 334
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=26.72 E-value=27 Score=23.96 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=27.2
Q ss_pred HccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 97 KEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 97 ~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
..|... .......||...|++...|..+|.++-.-
T Consensus 25 ~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 59 (190)
T 2v57_A 25 LVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDL 59 (190)
T ss_dssp HHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 335444 55667789999999999999999887643
No 335
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.39 E-value=1e+02 Score=18.63 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC-CChhhhhhhhhh
Q psy10486 27 PYSKHQTLELEKEFLYNAYVSKQKRWELARSLM-LTERQVKIWFQN 71 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~-l~~~qV~~WF~n 71 (183)
..|.++...|+......+.-+..--+.||..++ -+..+|..-|.-
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~ 55 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME 55 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHH
Confidence 589999999999988755434344457999985 777777755543
No 336
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=25.33 E-value=20 Score=24.90 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=29.9
Q ss_pred HHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhh
Q psy10486 93 LELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRM 133 (183)
Q Consensus 93 ~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~ 133 (183)
......|....| . .....||...|++...|..+|.++-.
T Consensus 23 ~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 61 (199)
T 2rek_A 23 EAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWG 61 (199)
T ss_dssp HHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHH
Confidence 334445666666 4 57889999999999999999987653
No 337
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=24.88 E-value=42 Score=24.74 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=32.2
Q ss_pred CCChhHH-HHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHH
Q psy10486 86 PYSKHQT-LELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136 (183)
Q Consensus 86 ~~t~~q~-~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~r 136 (183)
..+.+++ ..-...|....+- ......||..+|++...|..+|.++-.-..
T Consensus 28 ~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 78 (241)
T 2hxi_A 28 RWSTEQILDAAAELLLAGDAE-TFSVRKLAASLGTDSSSLYRHFRNKTELLR 78 (241)
T ss_dssp CCCHHHHHHHHHHHHSSSSCC-CCCHHHHHHHTTSCHHHHHHHTSSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCcCHHHHHHHcCCHHHHHH
Confidence 3444432 3333445555442 334668899999999999999998765443
No 338
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=24.82 E-value=1.4e+02 Score=18.95 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=35.3
Q ss_pred CChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHhH
Q psy10486 87 YSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQR 141 (183)
Q Consensus 87 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~~ 141 (183)
+++.+..++.-.|..+.. ......++|..+|++...|+..-..-..+-|.....
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~ 73 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 73 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666642210 112456889999999999999887666665555443
No 339
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=24.68 E-value=1.5e+02 Score=19.24 Aligned_cols=107 Identities=13% Similarity=0.190 Sum_probs=61.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCC--Chhhhhhhhhhcccccccccccc-------CCCC
Q psy10486 22 RKKRKPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLML--TERQVKIWFQNIEWTGQVTVRKK-------RKPY 87 (183)
Q Consensus 22 rr~r~~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WF~nrr~k~~~~~rr~-------r~~~ 87 (183)
......+++.++..|...|.. +-+++..+...+...+|+ +...+...|......+....... ....
T Consensus 11 ~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~ 90 (161)
T 3fwb_A 11 GPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKIL 90 (161)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHHHh
Confidence 344667999999999999985 356888888887777764 55667766654211110000000 0000
Q ss_pred ChhHHHHHHHcc---c--cCCccCHHHHHHHHHHhC--CChhhHHHHH
Q psy10486 88 SKHQTLELEKEF---L--YNAYVSKQKRWELARSLM--LTERQVKIWF 128 (183)
Q Consensus 88 t~~q~~~Le~~F---~--~~~~p~~~~~~~La~~l~--l~~~~V~~WF 128 (183)
.......+...| . .+.+++..+...+...+| ++...|...|
T Consensus 91 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 138 (161)
T 3fwb_A 91 KRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMI 138 (161)
T ss_dssp TCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 001122333333 2 345788888888777776 5666666655
No 340
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=24.54 E-value=56 Score=15.74 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHHHHh
Q psy10486 26 KPYSKHQTLELEKEF 40 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F 40 (183)
++|...|++.|....
T Consensus 7 trfdekqieelldnc 21 (31)
T 4h62_V 7 TRFDEKQIEELLDNC 21 (31)
T ss_dssp ---CHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH
Confidence 689999999987764
No 341
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=24.43 E-value=20 Score=26.30 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 33 TLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 33 l~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
+++....|...-|-. .....||+..|++...|...|.++
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK 87 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSK 87 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCH
Confidence 555566688877643 233569999999999999999885
No 342
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=24.28 E-value=51 Score=21.18 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCChhhHHHHHh
Q psy10486 109 KRWELARSLMLTERQVKIWFQ 129 (183)
Q Consensus 109 ~~~~La~~l~l~~~~V~~WF~ 129 (183)
....+|..+||++.+|..|=.
T Consensus 25 gq~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 25 GTEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp CHHHHHHHHTCCTTTHHHHHH
T ss_pred hHHHHHHHhCCCHHHHHHHHh
Confidence 455789999999999999743
No 343
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=24.26 E-value=1.4e+02 Score=18.92 Aligned_cols=99 Identities=13% Similarity=0.202 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCC--Chhhhhhhhhhccccccc--------cccccCCCCChhHH
Q psy10486 28 YSKHQTLELEKEFLY-----NAYVSKQKRWELARSLML--TERQVKIWFQNIEWTGQV--------TVRKKRKPYSKHQT 92 (183)
Q Consensus 28 ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WF~nrr~k~~~--------~~rr~r~~~t~~q~ 92 (183)
||.+|+..|...|.. +-+++..+...+...+|+ +...|...|.. ..+.- .............+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~--~~g~i~~~eF~~~~~~~~~~~~~~~~l 78 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE--APGPINFTMFLTMFGEKLNGTDPEDVI 78 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT--SSSCCCHHHHHHHHHHTTTSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh--CCCCcCHHHHHHHHHHHhccCCcHHHH
Confidence 688999999999975 457899998887777775 44556666544 00000 00000111112222
Q ss_pred HHHHHccc--cCCccCHHHHHHHHHHhC--CChhhHHHHH
Q psy10486 93 LELEKEFL--YNAYVSKQKRWELARSLM--LTERQVKIWF 128 (183)
Q Consensus 93 ~~Le~~F~--~~~~p~~~~~~~La~~l~--l~~~~V~~WF 128 (183)
..+-..|. .+.+++..+...+...+| ++...|...|
T Consensus 79 ~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~ 118 (143)
T 3j04_B 79 RNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMY 118 (143)
T ss_dssp HHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 22222332 345677777777666666 5555565555
No 344
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=24.08 E-value=30 Score=24.46 Aligned_cols=39 Identities=8% Similarity=-0.011 Sum_probs=29.5
Q ss_pred HHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHH
Q psy10486 95 LEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKN 135 (183)
Q Consensus 95 Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~ 135 (183)
....|....|- .....||...|++...|..+|.++-.=.
T Consensus 21 A~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~ 59 (224)
T 1t33_A 21 ALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDLY 59 (224)
T ss_dssp HHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHHH
Confidence 33445555555 5677899999999999999998876544
No 345
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=23.75 E-value=61 Score=19.71 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=22.2
Q ss_pred HHHHHhhhc--CCCCHHHHHHHHHHcCCChhhhhhhhhh
Q psy10486 35 ELEKEFLYN--AYVSKQKRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 35 ~Le~~F~~~--~~p~~~~~~~La~~l~l~~~qV~~WF~n 71 (183)
.|......+ ..|+. .+||..+|++...|..-...
T Consensus 12 ~I~~~i~~~~g~~psv---~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 12 IVQERQNMDDGAPVKT---RDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp HHHHHHHHHTTSCEEH---HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhhccCCCcCH---HHHHHHHCCCHHHHHHHHHH
Confidence 333443443 33454 46999999998888876654
No 346
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.62 E-value=1e+02 Score=21.29 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=29.1
Q ss_pred CCCCChhHHHHHHHccc-----cCCccCHHHHHHHHHHhCCChh
Q psy10486 84 RKPYSKHQTLELEKEFL-----YNAYVSKQKRWELARSLMLTER 122 (183)
Q Consensus 84 r~~~t~~q~~~Le~~F~-----~~~~p~~~~~~~La~~l~l~~~ 122 (183)
.+.+|.+|+..|...|. .+-+++..+...+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 35688888888888874 4557888888888888876543
No 347
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=23.54 E-value=50 Score=22.47 Aligned_cols=25 Identities=8% Similarity=0.031 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCChhhHHHHHhhhhh
Q psy10486 109 KRWELARSLMLTERQVKIWFQNRRM 133 (183)
Q Consensus 109 ~~~~La~~l~l~~~~V~~WF~nrR~ 133 (183)
....+|...|++...|..+|.++-.
T Consensus 36 t~~~IA~~agvs~~t~Y~~F~sK~~ 60 (191)
T 4aci_A 36 TVRRLEEATGKSRGAIFHHFGDKEN 60 (191)
T ss_dssp CHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred CHHHHHHHHCCCchHHHHHCCCHHH
Confidence 4668999999999999999987654
No 348
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=23.26 E-value=50 Score=22.40 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCChhhHHHHHhhhhhHH
Q psy10486 109 KRWELARSLMLTERQVKIWFQNRRMKN 135 (183)
Q Consensus 109 ~~~~La~~l~l~~~~V~~WF~nrR~k~ 135 (183)
....||...|++...|..+|.++-.-.
T Consensus 29 t~~~IA~~agvs~~tlY~~F~sK~~L~ 55 (186)
T 2jj7_A 29 SIQEIAKEAKVNVAMASYYFNGKENLY 55 (186)
T ss_dssp CHHHHHHHHTSCHHHHHHHHSSHHHHH
T ss_pred CHHHHHHHhCCChhhhhhhcCCHHHHH
Confidence 466899999999999999998765443
No 349
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=23.21 E-value=18 Score=26.22 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 33 TLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 33 l~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
+++-...|...-|-. .....||+..|++...|...|.++
T Consensus 50 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK 88 (236)
T 3q0w_A 50 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSK 88 (236)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCH
Confidence 445555588877633 233569999999999999999885
No 350
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=23.12 E-value=47 Score=22.71 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCChhhHHHHHhhhhhHH
Q psy10486 109 KRWELARSLMLTERQVKIWFQNRRMKN 135 (183)
Q Consensus 109 ~~~~La~~l~l~~~~V~~WF~nrR~k~ 135 (183)
....||...|++...|..+|.++-.-.
T Consensus 30 t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 56 (206)
T 3dew_A 30 SIRELAQAAGASISMISYHFGGKEGLY 56 (206)
T ss_dssp CHHHHHHHHTCCHHHHHHHSCHHHHHH
T ss_pred cHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 466899999999999999998876443
No 351
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=22.72 E-value=87 Score=19.97 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhh
Q psy10486 26 KPYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLMLTERQVKI 67 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~ 67 (183)
..++.++...|...|.. +-+++..+...+....+++...|..
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~ 52 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLAS 52 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHH
Confidence 35788899999999875 2356666655544444444444443
No 352
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=22.67 E-value=44 Score=22.66 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 109 KRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 109 ~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
....||...|++...|..+|.++-.-
T Consensus 30 t~~~Ia~~agvs~~t~Y~~F~sK~~L 55 (195)
T 3pas_A 30 SVGKIAKAAGLSPATLYIYYEDKEQL 55 (195)
T ss_dssp CHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred CHHHHHHHhCCCchHHHHHcCCHHHH
Confidence 46689999999999999999887643
No 353
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=22.60 E-value=85 Score=23.65 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccc
Q psy10486 17 GQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWT 75 (183)
Q Consensus 17 ~~~~~rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k 75 (183)
...........+|+.+.++|.-...- ....+||..||+++..|+....+-+.|
T Consensus 187 ~~~~~~~~~~~Lt~re~~vl~~~~~G------~s~~eIA~~l~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 187 NLPPASPSNMPLSQREYDIFHWMSRG------KTNWEIATILNISERTVKFHVANVIRK 239 (265)
T ss_dssp TCCCSSCCCCCCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred hccccCCCcCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHH
No 354
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=22.56 E-value=29 Score=21.86 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=8.9
Q ss_pred hhHHHHHhhhhh
Q psy10486 122 RQVKIWFQNRRM 133 (183)
Q Consensus 122 ~~V~~WF~nrR~ 133 (183)
.-|-.||+||-+
T Consensus 17 iliwlwfrnrpa 28 (117)
T 1w8x_P 17 ILIWLWFRNRPA 28 (117)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHccChH
Confidence 457899998754
No 355
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=22.48 E-value=45 Score=23.05 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCChhhHHHHHhhhhh
Q psy10486 109 KRWELARSLMLTERQVKIWFQNRRM 133 (183)
Q Consensus 109 ~~~~La~~l~l~~~~V~~WF~nrR~ 133 (183)
....+|...|++...|..+|.++-.
T Consensus 40 s~~~IA~~aGvs~~tlY~~F~sKe~ 64 (212)
T 3loc_A 40 RLEQIAELAGVSKTNLLYYFPSKEA 64 (212)
T ss_dssp CHHHHHHHHTSCHHHHHHHSSSHHH
T ss_pred CHHHHHHHHCcCHHHHhhhCCCHHH
Confidence 4668999999999999999998743
No 356
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=22.41 E-value=31 Score=23.65 Aligned_cols=38 Identities=8% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhh
Q psy10486 92 TLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNR 131 (183)
Q Consensus 92 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nr 131 (183)
+......|....|- .....+|...|++...|..+|.++
T Consensus 15 l~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK 52 (190)
T 3jsj_A 15 LEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESK 52 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCH
No 357
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=22.37 E-value=1e+02 Score=22.05 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhh
Q psy10486 31 HQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVK 66 (183)
Q Consensus 31 ~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~ 66 (183)
.-+.+|...=+..-|.+.+....+|..|||+.-+|.
T Consensus 26 ~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 26 AIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp GHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 345555555455579999999999999999999985
No 358
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.33 E-value=1.1e+02 Score=22.78 Aligned_cols=50 Identities=18% Similarity=-0.030 Sum_probs=35.2
Q ss_pred CCCChhHHHHHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHHHHh
Q psy10486 85 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140 (183)
Q Consensus 85 ~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk~~~ 140 (183)
..+++.+..+|.-.++.- ...++|..+|++...|++...+-+.+-+....
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~ 245 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVNRHRQNILEKLSVGNS 245 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 356777777766643222 35678999999999999998877666555433
No 359
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.25 E-value=21 Score=25.17 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=8.3
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 32 QTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 32 Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
-+++....|....|-. .....||...|++...|..+|.++
T Consensus 35 Il~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK 74 (212)
T 2np3_A 35 ILTAARVCFAERGFDA-TSLRRIAETAGVDQSLVHHFYGTK 74 (212)
T ss_dssp CHHHHHHHC----------------------------CCC-
T ss_pred HHHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHhCCH
Confidence 3556666788877655 344679999999999999999884
No 360
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=21.68 E-value=52 Score=22.36 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCChhhHHHHHhhhhh
Q psy10486 109 KRWELARSLMLTERQVKIWFQNRRM 133 (183)
Q Consensus 109 ~~~~La~~l~l~~~~V~~WF~nrR~ 133 (183)
....||...|++...|..+|.++-.
T Consensus 24 ti~~Ia~~agvs~~t~Y~~F~sK~~ 48 (194)
T 3bqz_B 24 TTGEIVKLSESSKGNLYYHFKTKEN 48 (194)
T ss_dssp CHHHHHHHTTCCHHHHHHHTSSHHH
T ss_pred CHHHHHHHhCCCchhHHHhCCCHHH
Confidence 4668999999999999999988754
No 361
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=21.66 E-value=52 Score=23.60 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWT 75 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k 75 (183)
..+|..+.++|.-.... . ...+||..++++.+.|.....+-+.|
T Consensus 148 ~~LT~rE~~vL~~l~~g---~---s~~eIa~~l~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG---L---TNKQIADRMFLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp TTSCHHHHHHHHHHHTT---C---CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCC---C---CHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45899998888766543 2 34679999999999999888875544
No 362
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=21.63 E-value=58 Score=22.26 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=26.8
Q ss_pred ccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHH
Q psy10486 98 EFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKN 135 (183)
Q Consensus 98 ~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~ 135 (183)
.|....|-. .....||...|++...|..+|.++-.-.
T Consensus 15 lf~~~G~~~-~s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 15 LFTEKGYEA-TSVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHCSTT-CCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 344444322 2356889999999999999999887654
No 363
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=21.59 E-value=35 Score=23.19 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=18.8
Q ss_pred HHHHHHHcCCChhhhhhhhhhcc
Q psy10486 51 RWELARSLMLTERQVKIWFQNIE 73 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~nrr 73 (183)
...+|..+|++..+++.|.-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 35789999999999999976433
No 364
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=21.50 E-value=57 Score=22.69 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=27.3
Q ss_pred HHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 96 EKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 96 e~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
...|....|-. .....||...|++...|..+|.++-.-
T Consensus 27 ~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L 64 (218)
T 3gzi_A 27 RNLFIERPYAQ-VSIREIASLAGTDPGLIRYYFGSKEKL 64 (218)
T ss_dssp HHHHHTSCCSC-CCHHHHHHHHTSCTHHHHHHHSSHHHH
T ss_pred HHHHHHCCCCc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33455555432 345678999999999999999887643
No 365
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=21.22 E-value=52 Score=22.50 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=28.0
Q ss_pred HHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHH
Q psy10486 95 LEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKN 135 (183)
Q Consensus 95 Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~ 135 (183)
....|....|- ......+|...|++...|..+|.++-.-.
T Consensus 16 A~~lf~~~G~~-~~t~~~IA~~agvs~~tlY~~F~sK~~L~ 55 (192)
T 2zcm_A 16 AITLFSEKGYD-GTTLDDISKSVNIKKASLYYHYDNKEEIY 55 (192)
T ss_dssp HHHHHHHHCTT-TCCHHHHHHHTTCCHHHHHHHTCCHHHHH
T ss_pred HHHHHHHcCcc-cCCHHHHHHHhCCChHHHHHHCCCHHHHH
Confidence 33445444442 23466889999999999999998876543
No 366
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=21.06 E-value=1.8e+02 Score=19.34 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=33.2
Q ss_pred CCCCCCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHcCCChhhhh-hhh
Q psy10486 23 KKRKPYSKHQTLELEKEFLYN----AYVSKQKRWELARSLMLTERQVK-IWF 69 (183)
Q Consensus 23 r~r~~ft~~Ql~~Le~~F~~~----~~p~~~~~~~La~~l~l~~~qV~-~WF 69 (183)
.....+|+++...+++.|..- -|++..+...+-...||+...+. +|-
T Consensus 22 ~~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~ 73 (121)
T 3fia_A 22 LDTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWA 73 (121)
T ss_dssp TTTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345668999999999999864 34666776666666777766654 553
No 367
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.06 E-value=59 Score=22.74 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=27.4
Q ss_pred HccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 97 KEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 97 ~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
..|.... .......||...|++...|..+|.++-.-
T Consensus 31 ~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L 66 (215)
T 2hku_A 31 ELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERL 66 (215)
T ss_dssp HHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3354444 45567789999999999999999887644
No 368
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=21.02 E-value=22 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=19.8
Q ss_pred HHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 112 ELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 112 ~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
++|..+|++...|+.+...-+.+-|+
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 36677889999999998766666554
No 369
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=20.96 E-value=52 Score=22.26 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 109 KRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 109 ~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
....||...|++...|..+|.++-.-
T Consensus 32 t~~~IA~~agvs~~t~Y~~F~sK~~L 57 (191)
T 3on4_A 32 SFKDIATAINIKTASIHYHFPSKEDL 57 (191)
T ss_dssp CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred CHHHHHHHhCCCcchhhhcCCCHHHH
Confidence 46688999999999999999887643
No 370
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.94 E-value=60 Score=22.61 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=26.9
Q ss_pred HccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHH
Q psy10486 97 KEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKN 135 (183)
Q Consensus 97 ~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~ 135 (183)
..|....|- ......||...|++...|..+|.++-.-.
T Consensus 19 ~lf~~~G~~-~~s~~~IA~~aGvs~~tiY~~F~sKe~L~ 56 (202)
T 2d6y_A 19 AEFARHGIA-GARIDRIAAEARANKQLIYAYYGNKGELF 56 (202)
T ss_dssp HHHHHHTTT-SCCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHcCcc-cCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 334444432 22466889999999999999998876543
No 371
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=20.90 E-value=1.8e+02 Score=18.90 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCC--hhhhhhhhhhccccccc----------cccccCCCCCh
Q psy10486 27 PYSKHQTLELEKEFLY-----NAYVSKQKRWELARSLMLT--ERQVKIWFQNIEWTGQV----------TVRKKRKPYSK 89 (183)
Q Consensus 27 ~ft~~Ql~~Le~~F~~-----~~~p~~~~~~~La~~l~l~--~~qV~~WF~nrr~k~~~----------~~rr~r~~~t~ 89 (183)
-||++|+..|...|.. +-+++..+...+...+|.. ...|...|...-..+.. .........+.
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 82 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNNGQLNFTEFCGIMAKQMRETDTE 82 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHHHHHHHHHHHHTTSTTEEEHHHHHHHHHHTTTTTTTH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHHHHHHHHHhcccCCCCcccHHHHHHHHHHHhcccCcH
Confidence 4889999999999865 3457777777776777654 44454444322111000 00111112223
Q ss_pred hHHHHHHHcc--ccCCccCHHHHHHHHHHhC--CChhhHHHHH
Q psy10486 90 HQTLELEKEF--LYNAYVSKQKRWELARSLM--LTERQVKIWF 128 (183)
Q Consensus 90 ~q~~~Le~~F--~~~~~p~~~~~~~La~~l~--l~~~~V~~WF 128 (183)
+.+...-..| ..+.+++..+...+...+| ++...|..+|
T Consensus 83 ~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 125 (148)
T 2lmt_A 83 EEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMI 125 (148)
T ss_dssp HHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHH
Confidence 3333333333 3466899998888887776 5555666666
No 372
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=20.88 E-value=1.4e+02 Score=17.59 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=36.8
Q ss_pred ccccCCCCChhHHHHHHHcccc-C-CccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 80 VRKKRKPYSKHQTLELEKEFLY-N-AYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 80 ~rr~r~~~t~~q~~~Le~~F~~-~-~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
.++++-.+|++.-..+..+... . ...+...+.++-..-||+..+|+.-.|.-|..-+|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 3456778888766554444332 2 22334444455445689999999999988877654
No 373
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.84 E-value=36 Score=23.54 Aligned_cols=39 Identities=13% Similarity=0.008 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 32 QTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 32 Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
-+++....|...-| . .....||+..|++...|...|.++
T Consensus 21 Il~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK 59 (199)
T 2rek_A 21 IIEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSR 59 (199)
T ss_dssp HHHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCH
Confidence 35555666988888 6 577889999999999999999884
No 374
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=20.83 E-value=73 Score=22.84 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=28.2
Q ss_pred hHHHHHHHccccCCccCHHHHHHHHHHhCCChhhH
Q psy10486 90 HQTLELEKEFLYNAYVSKQKRWELARSLMLTERQV 124 (183)
Q Consensus 90 ~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V 124 (183)
.-+.+|...-....|++......+|..|+|+..+|
T Consensus 26 ~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 26 AIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp GHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHH
Confidence 34555655555568999999999999999999987
No 375
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.74 E-value=82 Score=19.74 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=18.4
Q ss_pred HHHHHHHcCCChhhhhhhhhh
Q psy10486 51 RWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 51 ~~~La~~l~l~~~qV~~WF~n 71 (183)
...||..+|++...+...|..
T Consensus 21 ~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 21 IEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 456999999999999999975
No 376
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=20.68 E-value=74 Score=22.32 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhcccc
Q psy10486 26 KPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNIEWT 75 (183)
Q Consensus 26 ~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nrr~k 75 (183)
..+|..+.++|.-....- + ..+||..++++.+.|.....+-+.|
T Consensus 153 ~~Lt~rE~~vl~~l~~g~---s---~~~Ia~~l~is~~TV~~hi~~i~~K 196 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL---P---NKMIARRLDITESTVKVHVKHMLKK 196 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC---C---HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCC---C---HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 358999988888665532 2 5679999999999999888775554
No 377
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=20.66 E-value=82 Score=15.08 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=10.2
Q ss_pred hhhhhHHHHHHhHH
Q psy10486 129 QNRRMKNKKNTQRQ 142 (183)
Q Consensus 129 ~nrR~k~rk~~~~~ 142 (183)
.|+|.+|+..+.+.
T Consensus 7 RnRRRRWR~Rq~qi 20 (26)
T 1etf_B 7 RNRRRRWRERQRAA 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 57888888776554
No 378
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=20.49 E-value=63 Score=22.30 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=26.4
Q ss_pred HHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhh
Q psy10486 96 EKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRM 133 (183)
Q Consensus 96 e~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~ 133 (183)
...|...-|-. .....||...|++...|..+|.++-.
T Consensus 22 ~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~ 58 (197)
T 2hyt_A 22 RKVFSERGYAD-TSMDDLTAQASLTRGALYHHFGDKKG 58 (197)
T ss_dssp HHHHHHHCTTT-CCHHHHHHHHTCCTTHHHHHHSSHHH
T ss_pred HHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 33355444432 24668899999999999999988654
No 379
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=20.46 E-value=53 Score=22.59 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=26.2
Q ss_pred cccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHH
Q psy10486 99 FLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKN 135 (183)
Q Consensus 99 F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~ 135 (183)
|....|- ......||...|++...|..+|.++-.-.
T Consensus 25 f~e~G~~-~~t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 25 LLESGFK-AVTVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHCTT-TCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHcCcc-cccHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 4444432 23466889999999999999998765544
No 380
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=20.41 E-value=1.4e+02 Score=18.07 Aligned_cols=30 Identities=3% Similarity=0.165 Sum_probs=21.0
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhh
Q psy10486 35 ELEKEFLYNAYVSKQKRWELARSLMLTERQVKI 67 (183)
Q Consensus 35 ~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~ 67 (183)
.+.+.-......+.. +||..|++++..|..
T Consensus 6 ~Il~~L~~~g~vsv~---eLa~~l~VS~~TIRr 35 (78)
T 1xn7_A 6 QVRDLLALRGRMEAA---QISQTLNTPQPMINA 35 (78)
T ss_dssp HHHHHHHHSCSBCHH---HHHHHTTCCHHHHHH
T ss_pred HHHHHHHHcCCCcHH---HHHHHHCcCHHHHHH
Confidence 344444556666664 499999999988864
No 381
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=20.41 E-value=34 Score=22.68 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhh
Q psy10486 23 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVK 66 (183)
Q Consensus 23 r~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~ 66 (183)
|.+.-|+..++--|-..|.= +......||..|+++...|-
T Consensus 67 r~~~G~p~~eI~~l~~~f~w----~~~~~~~l~~~l~~t~~~~~ 106 (116)
T 3rmq_A 67 AKALGWPMREISDLAHRFDW----SPALITRLAEVLHCSFGEVV 106 (116)
T ss_dssp HHHTTCCHHHHHHHHTTSCC----CHHHHHHHHHHSCSCHHHHH
T ss_pred HHhcCCCHHHhhhhhhhhcC----CHHHHHHHHHHhcCcchhee
Confidence 44677999999999999965 44888899999999987764
No 382
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=20.31 E-value=72 Score=22.72 Aligned_cols=39 Identities=13% Similarity=-0.058 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhhhc
Q psy10486 33 TLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNI 72 (183)
Q Consensus 33 l~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF~nr 72 (183)
+++....|....|-.. ....||+..|++...|...|.++
T Consensus 49 l~aA~~l~~~~G~~~~-tv~~IA~~AGvs~~t~Y~~F~sK 87 (229)
T 3bni_A 49 LDACADLLDEVGYDAL-STRAVALRADVPIGSVYRFFGNK 87 (229)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHhcChhhc-cHHHHHHHHCCCchhHHHHcCCH
Confidence 4444555888877543 33669999999999999999884
No 383
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=20.29 E-value=54 Score=22.87 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=27.0
Q ss_pred HHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 96 EKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 96 e~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
...|....|- ......||...|++...|..+|.++-.-
T Consensus 21 ~~lf~~~G~~-~~s~~~IA~~aGvskgtlY~~F~sKe~L 58 (210)
T 2xdn_A 21 ERAFYKRGVA-RTTLADIAELAGVTRGAIYWHFNNKAEL 58 (210)
T ss_dssp HHHHHHHCST-TCCHHHHHHHHTCCTTHHHHHCSSHHHH
T ss_pred HHHHHHcCcc-cCcHHHHHHHHCCChHHHHHHhCCHHHH
Confidence 3335444432 2346688999999999999999887644
No 384
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=20.19 E-value=53 Score=23.01 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=28.4
Q ss_pred HccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHHH
Q psy10486 97 KEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137 (183)
Q Consensus 97 ~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~rk 137 (183)
..|...-|-. .....||...|++...|..+|.++-.-..-
T Consensus 22 ~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L~~a 61 (210)
T 2wui_A 22 RVFLEKGVGT-TAMADLADAAGVSRGAVYGHYKNKIEVCLA 61 (210)
T ss_dssp HHHHHSCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 3355554432 246688999999999999999887655443
No 385
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.13 E-value=1.2e+02 Score=18.29 Aligned_cols=44 Identities=16% Similarity=0.072 Sum_probs=27.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHH--HHcCCChhhh
Q psy10486 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELA--RSLMLTERQV 65 (183)
Q Consensus 22 rr~r~~ft~~Ql~~Le~~F~~~~~p~~~~~~~La--~~l~l~~~qV 65 (183)
++....|++-|+.-|++.=-...-|+...-+++. ..|++.+..|
T Consensus 23 ~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdIDP~TI 68 (71)
T 2eo2_A 23 VNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATI 68 (71)
T ss_dssp SSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCCSTTC
T ss_pred CCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccCccce
Confidence 4456789999999999984444445444434432 3567666554
No 386
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.09 E-value=55 Score=22.83 Aligned_cols=39 Identities=10% Similarity=-0.051 Sum_probs=27.5
Q ss_pred HHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHH
Q psy10486 96 EKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKN 135 (183)
Q Consensus 96 e~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~ 135 (183)
...|...-|- ......||...|++...|..+|.++-.-.
T Consensus 19 ~~lf~~~G~~-~~s~~~IA~~AGvs~gtlY~~F~sKe~L~ 57 (203)
T 2np5_A 19 FDVAAESGLE-GASVREVAKRAGVSIGAVQHHFSTKDEMF 57 (203)
T ss_dssp HHHHHHHCGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHhChh-hccHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3335444432 23466889999999999999999876543
No 387
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=20.08 E-value=53 Score=22.89 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=27.8
Q ss_pred HccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhHHH
Q psy10486 97 KEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136 (183)
Q Consensus 97 ~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k~r 136 (183)
..|....|-. .....+|...|++...|..+|.++-.-..
T Consensus 21 ~lf~~~G~~~-~s~~~IA~~aGvs~~t~Y~~F~sKe~L~~ 59 (210)
T 3vib_A 21 ETFYRKGIAR-TSLNEIAQAAGVTRDALYWHFKNKEDLFD 59 (210)
T ss_dssp HHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHhCccc-CCHHHHHHHHCcCHHHHHHHCCCHHHHHH
Confidence 3355544432 24668899999999999999998765433
No 388
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=20.07 E-value=55 Score=22.14 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=28.5
Q ss_pred HHHHccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 94 ELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 94 ~Le~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
.....|....|- ......||...|++...|..+|.++-.-
T Consensus 17 aa~~l~~~~G~~-~~tv~~Ia~~agvs~~t~Y~~F~sK~~L 56 (195)
T 3ppb_A 17 TALQLFVSQGFH-GTSTATIAREAGVATGTLFHHFPSKEQL 56 (195)
T ss_dssp HHHHHHHHTCST-TSCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 334445555442 3346688999999999999999887643
No 389
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.04 E-value=57 Score=22.94 Aligned_cols=36 Identities=8% Similarity=0.028 Sum_probs=26.2
Q ss_pred ccccCCccCHHHHHHHHHHhCCChhhHHHHHhhhhhH
Q psy10486 98 EFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134 (183)
Q Consensus 98 ~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF~nrR~k 134 (183)
.|...-|-. .....||...|++...|..+|.++-.-
T Consensus 21 lf~~~G~~~-~s~~~IA~~aGvs~gtlY~yF~sKe~L 56 (209)
T 2gfn_A 21 LIAREGISA-VTTRAVAEESGWSTGVLNHYFGSRHEL 56 (209)
T ss_dssp HHHHHCGGG-CCHHHHHHHHSSCHHHHHHHTSSHHHH
T ss_pred HHHHhCccc-CCHHHHHHHHCCCcchHHhcCCCHHHH
Confidence 354444432 346688999999999999999887643
No 390
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=20.02 E-value=22 Score=24.54 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChhhhhhhhhh
Q psy10486 50 KRWELARSLMLTERQVKIWFQN 71 (183)
Q Consensus 50 ~~~~La~~l~l~~~qV~~WF~n 71 (183)
...+||..+|++...|..|-.+
T Consensus 16 tq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 16 TQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCcCHHHHHHHHCC
Confidence 3467999999999999999443
Done!