RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10486
(183 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 82.9 bits (206), Expect = 1e-21
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
R+KR ++ Q ELEKEF N Y S ++R ELA+ L LTERQVK+WFQNRR K K+
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
Score = 71.0 bits (175), Expect = 4e-17
Identities = 29/50 (58%), Positives = 36/50 (72%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
R+KR ++ Q ELEKEF N Y S ++R ELA+ L LTERQVK+WFQN
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQN 50
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 73.8 bits (182), Expect = 4e-18
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136
R+KR ++ Q ELEKEF N Y S+++R ELA+ L L+ERQVK+WFQNRR K K
Sbjct: 2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Score = 65.0 bits (159), Expect = 1e-14
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
R+KR ++ Q ELEKEF N Y S+++R ELA+ L L+ERQVK+WFQN
Sbjct: 2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQN 51
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in
the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 73.4 bits (181), Expect = 5e-18
Identities = 34/58 (58%), Positives = 43/58 (74%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138
R+KR ++ Q ELEKEF N Y S+++R ELA+ L LTERQVKIWFQNRR K K++
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
Score = 63.4 bits (155), Expect = 4e-14
Identities = 30/50 (60%), Positives = 37/50 (74%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
R+KR ++ Q ELEKEF N Y S+++R ELA+ L LTERQVKIWFQN
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQN 50
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 49.7 bits (119), Expect = 4e-08
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140
+ KR+ + Q + LE+EF N Y S R +L+ L + + V+IWFQN+R K KK
Sbjct: 52 KSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRS 111
Query: 141 RQAAQ 145
+ Q
Sbjct: 112 GKVEQ 116
Score = 40.5 bits (95), Expect = 9e-05
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ KR+ + Q + LE+EF N Y S R +L+ L + + V+IWFQN
Sbjct: 52 KSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQN 101
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 27.8 bits (63), Expect = 0.42
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 100 LYNAYVSKQKRWELARSLMLTERQVKIWFQNRRM 133
L+N Y S++++ ELAR L+ +Q+ WF N R
Sbjct: 6 LHNPYPSEEEKSELARQTGLSRKQIDNWFINARR 39
Score = 26.7 bits (60), Expect = 1.3
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 41 LYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
L+N Y S++++ ELAR L+ +Q+ WF N
Sbjct: 6 LHNPYPSEEEKSELARQTGLSRKQIDNWFIN 36
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase.
Length = 359
Score = 28.7 bits (64), Expect = 1.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 62 ERQVKIWFQNIEWTGQVTVRKKRKPYSKHQTLELEKEFL 100
ERQ + F +G+ R R P+SK + E + FL
Sbjct: 308 ERQRTVMFGEYNCSGRGADRGGRVPWSKTLSYEEVRPFL 346
>gnl|CDD|132669 TIGR03630, arch_S17P, archaeal ribosomal protein S17P. This
model describes exclusively the archaeal ribosomal
protein S17P. It excludes the homologous ribosomal
protein S17 from bacteria, and is not intended for use
on eukaryotic sequences, where some instances of
ribosomal proteins S11 score above the trusted cutoff
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 102
Score = 26.9 bits (60), Expect = 2.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 17 GQV---TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARS 57
GQ+ V + ++T+ +E+E+LY Y K +R+E RS
Sbjct: 27 GQILEGVVVSDKM----NKTVVVEREYLY--YDRKYERYERRRS 64
Score = 26.9 bits (60), Expect = 2.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 76 GQV---TVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARS 116
GQ+ V + ++T+ +E+E+LY Y K +R+E RS
Sbjct: 27 GQILEGVVVSDKM----NKTVVVEREYLY--YDRKYERYERRRS 64
>gnl|CDD|217089 pfam02535, Zip, ZIP Zinc transporter. The ZIP family consists of
zinc transport proteins and many putative metal
transporters. The main contribution to this family is
from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although
this protein in not found within this family.
Length = 314
Score = 27.7 bits (62), Expect = 3.9
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 117 LMLTERQVKIWF------QNRRMKNKKNTQRQAAQASNNNNTSNTNNNTSHHGHHHHHIG 170
++L E+ + + + + +++ + S ++ ++ HHHHH G
Sbjct: 91 VLLVEKLLTYYKGRGHSHGHDHGHDGEHSHTVPDEESGAVESNVVHHEHGEGPHHHHHEG 150
Query: 171 H 171
H
Sbjct: 151 H 151
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional.
Length = 279
Score = 27.4 bits (61), Expect = 4.0
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 160 SHHGHHHHHIGHAVTNGGLKHHHQ 183
H HHHH H T + H+
Sbjct: 136 HHDHGHHHHHEHGATAEEYQDAHE 159
>gnl|CDD|114473 pfam05749, Rubella_E2, Rubella membrane glycoprotein E2. Rubella
virus (RV), the sole member of the genus Rubivirus
within the family Togaviridae, is a small enveloped,
positive strand RNA virus. The nucleocapsid consists of
40S genomic RNA and a single species of capsid protein
which is enveloped within a host-derived lipid bilayer
containing two viral glycoproteins, E1 (58 kDa) and E2
(42-46 kDa). In virus infected cells, RV matures by
budding either at the plasma membrane, or at the
internal membranes depending on the cell type and enters
adjacent uninfected cells by a membrane fusion process
in the endosome, directed by E1-E2 heterodimers. The
heterodimer formation is crucial for E1 transport out of
the endoplasmic reticulum to the Golgi and plasma
membrane. In RV E1, a cysteine at position 82 is crucial
for the E1-E2 heterodimer formation and cell surface
expression of the two proteins.
Length = 267
Score = 27.0 bits (59), Expect = 5.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 161 HHGHHHHH---IGHAVTNGG---LKHHHQ 183
H+GHHHH +GH +GG + HH+
Sbjct: 24 HYGHHHHQLPFLGHDGHHGGTLRVGQHHR 52
>gnl|CDD|237381 PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional.
Length = 342
Score = 27.0 bits (60), Expect = 6.8
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 8/24 (33%)
Query: 159 TSHHGHHHHHIGHAVTNGGLKHHH 182
T+H GH H H H
Sbjct: 327 TAHEGHDEEHAEA--------HGH 342
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic
component; Reviewed.
Length = 311
Score = 26.9 bits (60), Expect = 7.3
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 155 TNNNTSHHGHHHHHIGHAVTNGGLKHHH 182
+ HH H H GH ++ HHH
Sbjct: 115 KGAHDDHHDDDHDHAGHEKSDED--HHH 140
>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA. These proteins have been
shown to function as initial receptors in the ABC uptake
of Zn2+. They belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. They are comprised
of two globular subdomains connected by a single helix
and bind their specific ligands in the cleft between
these domains. A typical TroA protein is comprised of
two globular subdomains connected by a single helix and
can bind the metal ion in the cleft between these
domains. In addition, these proteins sometimes have a
low complexity region containing a metal-binding
histidine-rich motif (repetitive HDH sequence).
Length = 286
Score = 26.6 bits (59), Expect = 7.4
Identities = 5/30 (16%), Positives = 7/30 (23%)
Query: 153 SNTNNNTSHHGHHHHHIGHAVTNGGLKHHH 182
+ H H H +G H
Sbjct: 86 IDLKTLEDGASHGDHEHDHEHAHGEHDGHE 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.123 0.368
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,674,818
Number of extensions: 735793
Number of successful extensions: 1168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1112
Number of HSP's successfully gapped: 54
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)