RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10486
(183 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 74.5 bits (183), Expect = 8e-19
Identities = 45/70 (64%), Positives = 56/70 (80%)
Query: 74 WTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRM 133
W + RKKR PY+KHQTLELEKEFL+N Y+++ +R+E+AR L LTERQVKIWFQNRRM
Sbjct: 7 WLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 66
Query: 134 KNKKNTQRQA 143
K KK + +A
Sbjct: 67 KMKKINKDRA 76
Score = 62.5 bits (152), Expect = 2e-14
Identities = 38/63 (60%), Positives = 49/63 (77%)
Query: 9 SSSTLEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIW 68
++ W + RKKR PY+KHQTLELEKEFL+N Y+++ +R+E+AR L LTERQVKIW
Sbjct: 1 NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIW 60
Query: 69 FQN 71
FQN
Sbjct: 61 FQN 63
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 72.1 bits (177), Expect = 3e-18
Identities = 34/54 (62%), Positives = 47/54 (87%)
Query: 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
R+ Y+++QTLELEKEF +N Y+++++R E+A +L LTERQ+KIWFQNRRMK KK
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
Score = 61.3 bits (149), Expect = 5e-14
Identities = 28/47 (59%), Positives = 41/47 (87%)
Query: 25 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
R+ Y+++QTLELEKEF +N Y+++++R E+A +L LTERQ+KIWFQN
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQN 47
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 70.6 bits (173), Expect = 2e-17
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140
++ R +++ Q LEKEF Y R LA + L E ++++WF NRR K ++ +
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 141 RQAAQ 145
+ +
Sbjct: 62 LRNQR 66
Score = 59.4 bits (144), Expect = 4e-13
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
++ R +++ Q LEKEF Y R LA + L E ++++WF N
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSN 51
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 69.5 bits (170), Expect = 3e-17
Identities = 31/57 (54%), Positives = 43/57 (75%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
RKKR PYSK Q ELE+E+ N +++K KR +++ + L+ERQ+ IWFQNRR+K KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
Score = 58.3 bits (141), Expect = 7e-13
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
RKKR PYSK Q ELE+E+ N +++K KR +++ + L+ERQ+ IWFQN
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQN 51
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 69.1 bits (169), Expect = 5e-17
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
+ + +S QT+ELEK+F Y+S +R LA+ L L+ERQVK WFQNRR K ++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
Score = 58.7 bits (142), Expect = 6e-13
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ + +S QT+ELEK+F Y+S +R LA+ L L+ERQVK WFQN
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQN 50
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 67.6 bits (165), Expect = 2e-16
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 82 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMK 134
+ R +S Q L++EF N Y+++++R +L+ L L E Q+KIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
Score = 59.1 bits (143), Expect = 4e-13
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 23 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ R +S Q L++EF N Y+++++R +L+ L L E Q+KIWFQN
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQN 49
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 66.5 bits (162), Expect = 7e-16
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140
RK+R +S+ Q ELE+ F Y+S +R LA + LT QVKIWFQN R K K+ +
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Query: 141 RQAAQ 145
+AAQ
Sbjct: 63 DKAAQ 67
Score = 52.6 bits (126), Expect = 1e-10
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
RK+R +S+ Q ELE+ F Y+S +R LA + LT QVKIWFQN
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQN 52
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 65.7 bits (160), Expect = 2e-15
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140
R+ R ++ Q ELE+ FL Y++ + +L+ L L QVKIWF+NRR ++K +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 141 RQAAQA 146
+ Q+
Sbjct: 62 QHKDQS 67
Score = 53.0 bits (127), Expect = 1e-10
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
R+ R ++ Q ELE+ FL Y++ + +L+ L L QVKIWF+N
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKN 51
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 64.6 bits (157), Expect = 3e-15
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
RK R P++ Q L LE++F Y+S +R E + SL LTE QVKIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
Score = 54.2 bits (130), Expect = 3e-11
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
RK R P++ Q L LE++F Y+S +R E + SL LTE QVKIWFQN
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQN 50
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 63.2 bits (154), Expect = 1e-14
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 81 RKKRKPYSKHQTLELEKEF---LYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
+ KR KH T + + + Y ++ ++ ++A LT QV WF N R + +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
Score = 55.5 bits (134), Expect = 8e-12
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 22 RKKRKPYSKHQTLELEKEF---LYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ KR KH T + + + Y ++ ++ ++A LT QV WF N
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFIN 55
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 62.9 bits (153), Expect = 2e-14
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139
+ R ++ Q L + N + +L L+ R +++WFQN+R K+KK +
Sbjct: 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
Score = 53.3 bits (128), Expect = 8e-11
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ R ++ Q L + N + +L L+ R +++WFQN
Sbjct: 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQN 53
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 63.1 bits (153), Expect = 2e-14
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 15/82 (18%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELAR---------------SLMLTERQVK 125
R R + K +E F N Y + KR E+A +T +V
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 126 IWFQNRRMKNKKNTQRQAAQAS 147
WF NRR + K+ A S
Sbjct: 61 NWFANRRKEIKRRANIAAILES 82
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 62.2 bits (151), Expect = 2e-14
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRR 132
R ++ Q L F N SK+ + +++ L L V +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
Score = 57.2 bits (138), Expect = 1e-12
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 25 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
R ++ Q L F N SK+ + +++ L L V +F N
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMN 48
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 62.7 bits (152), Expect = 3e-14
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 71 NIEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 130
+ G + R ++ Q ELEKEF +N Y+S+ +R E+A +L L E QVKIWFQN
Sbjct: 18 KVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQN 77
Query: 131 RRMKNKK 137
RRMK KK
Sbjct: 78 RRMKQKK 84
Score = 56.2 bits (135), Expect = 1e-11
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 1 MSSMNVNSSSSTLEWTGQVTVRKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLML 60
M ++ + G + R ++ Q ELEKEF +N Y+S+ +R E+A +L L
Sbjct: 7 MKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLEL 66
Query: 61 TERQVKIWFQN 71
E QVKIWFQN
Sbjct: 67 NETQVKIWFQN 77
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 61.8 bits (150), Expect = 3e-14
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 82 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
+ R +++ Q LEKEF YVS+ +R ELA L L E +K+WFQNRRMK+K+
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
Score = 51.4 bits (123), Expect = 3e-10
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 23 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ R +++ Q LEKEF YVS+ +R ELA L L E +K+WFQN
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQN 49
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 61.1 bits (148), Expect = 7e-14
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 82 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
K+R S LE+ F ++ S Q+ +A L L + V++WF NRR + K+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
Score = 51.8 bits (124), Expect = 2e-10
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 23 KKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
K+R S LE+ F ++ S Q+ +A L L + V++WF N
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCN 49
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 60.7 bits (147), Expect = 1e-13
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
R++R ++ Q +LE F N Y R E+A LTE +V++WF+NRR K +K
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58
Score = 51.9 bits (124), Expect = 2e-10
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
R++R ++ Q +LE F N Y R E+A LTE +V++WF+N
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 51
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 60.1 bits (146), Expect = 1e-13
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 88 SKHQTLELEKEFL-YNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138
+ LEK F + +++ L++ L R ++ WF+ RR + K +
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 52
Score = 49.3 bits (118), Expect = 2e-09
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 29 SKHQTLELEKEFL-YNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ LEK F + +++ L++ L R ++ WF+
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQ 44
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 60.2 bits (146), Expect = 1e-13
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 82 KKRKPYSKHQTLELEKEFL-YNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136
K LEK F+ Y +++ L++ L + R+++ WF++RR ++K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
Score = 52.1 bits (125), Expect = 2e-10
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 23 KKRKPYSKHQTLELEKEFL-YNAYVSKQKRWELARSLMLTERQVKIWFQN 71
K LEK F+ Y +++ L++ L + R+++ WF++
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRH 52
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 60.2 bits (146), Expect = 2e-13
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 83 KRKPYSKHQTLELEKEF---LYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139
+ ++K LE F + N Y+ + L ++ L+ Q+K W NRR K K T
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTIT 60
Score = 49.4 bits (118), Expect = 2e-09
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 24 KRKPYSKHQTLELEKEF---LYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ ++K LE F + N Y+ + L ++ L+ Q+K W N
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 51
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 60.1 bits (145), Expect = 3e-13
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140
RK+R ++K QT ELE+ F Y+S +R LA + LT QVKIWFQN R K K+
Sbjct: 10 RKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69
Query: 141 RQ 142
+
Sbjct: 70 EK 71
Score = 49.7 bits (118), Expect = 2e-09
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
RK+R ++K QT ELE+ F Y+S +R LA + LT QVKIWFQN
Sbjct: 10 RKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQN 59
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 59.5 bits (144), Expect = 3e-13
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140
R+ R +S Q ELE+ F Y R ELA+ LTE ++++WFQNRR + +K
Sbjct: 3 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 62
Score = 50.3 bits (120), Expect = 1e-09
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
R+ R +S Q ELE+ F Y R ELA+ LTE ++++WFQN
Sbjct: 3 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQN 52
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 58.8 bits (142), Expect = 6e-13
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 81 RKKRKPYSKHQTLELEKEF-LYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139
+ ++ Q LE F N + +A LTE Q + WF+ R + +++
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 140 QRQAAQAS 147
+ S
Sbjct: 62 GLPSECRS 69
Score = 48.4 bits (115), Expect = 5e-09
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 22 RKKRKPYSKHQTLELEKEF-LYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ ++ Q LE F N + +A LTE Q + WF+
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQ 52
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 59.0 bits (142), Expect = 8e-13
Identities = 14/72 (19%), Positives = 31/72 (43%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140
+K K + Q L+ FL ++ ++ ++ L LT R++ WF ++ +
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64
Query: 141 RQAAQASNNNNT 152
+ SN ++
Sbjct: 65 KMEIDESNAGSS 76
Score = 45.5 bits (107), Expect = 7e-08
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+K K + Q L+ FL ++ ++ ++ L LT R++ WF
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTE 54
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 58.4 bits (141), Expect = 9e-13
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 81 RKKRKPYSKHQTLELEK---EFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
R+KR+ ++K T L + L N Y S++ + ELA+ +T QV WF N+R++ KK
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 138 NTQRQAAQAS 147
N + +A+
Sbjct: 62 NIGKFQEEAN 71
Score = 46.9 bits (111), Expect = 2e-08
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 22 RKKRKPYSKHQTLELEK---EFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
R+KR+ ++K T L + L N Y S++ + ELA+ +T QV WF N
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 54
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 57.2 bits (138), Expect = 2e-12
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136
+ S LE+ F ++ +++ E+A+ +T QV++WF N+RM++K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
Score = 48.7 bits (116), Expect = 3e-09
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 25 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ S LE+ F ++ +++ E+A+ +T QV++WF N
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFIN 47
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 55.8 bits (134), Expect = 9e-12
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNT 139
++KR LE FL S Q+ +A L L + V++WF NRR K K+++
Sbjct: 9 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRSS 67
Score = 46.5 bits (110), Expect = 3e-08
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
++KR LE FL S Q+ +A L L + V++WF N
Sbjct: 9 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCN 58
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 52.4 bits (125), Expect = 2e-10
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 81 RKKRKPYSKHQTLELEKEFL-YNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKN 138
+ R S L+ Y ++ L+ L L + + +FQN+R K +
Sbjct: 8 PRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66
Score = 43.5 bits (102), Expect = 4e-07
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 22 RKKRKPYSKHQTLELEKEFL-YNAYVSKQKRWELARSLMLTERQVKIWFQN 71
+ R S L+ Y ++ L+ L L + + +FQN
Sbjct: 8 PRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQN 58
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 50.7 bits (121), Expect = 6e-10
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 83 KRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKK 137
KR + + LEK F+ N + + +A L + + +++WF NRR K K+
Sbjct: 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
Score = 42.6 bits (100), Expect = 7e-07
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 24 KRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
KR + + LEK F+ N + + +A L + + +++WF N
Sbjct: 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSN 48
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 47.9 bits (113), Expect = 1e-08
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 21/78 (26%)
Query: 84 RKPYSKHQTLELEKEFLYNAYVSKQKRWELARSL---------------------MLTER 122
R + L + + SK++R L ++TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 123 QVKIWFQNRRMKNKKNTQ 140
+V WF NRR + +
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 47.3 bits (112), Expect = 2e-08
Identities = 6/61 (9%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 81 RKKRKPYSKHQTLELEKEFL----YNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNK 136
++ R ++ Q ++ + + + +KIW N +
Sbjct: 18 KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77
Query: 137 K 137
Sbjct: 78 S 78
Score = 39.2 bits (91), Expect = 2e-05
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 8 SSSSTLEWTGQVTVRKKRKPYSKHQTLELEKEFL----YNAYVSKQKRWELARSLMLTER 63
SS + + T ++ R ++ Q ++ + + +
Sbjct: 4 GSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQ 63
Query: 64 QVKIWFQN 71
+KIW N
Sbjct: 64 VLKIWMHN 71
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 44.0 bits (103), Expect = 3e-07
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 81 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQNRRMKNKKNTQ 140
K +K Q L+ FL + ++ +L + L ++ WF + R K
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63
Query: 141 RQ 142
+
Sbjct: 64 KW 65
Score = 35.5 bits (81), Expect = 4e-04
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 22 RKKRKPYSKHQTLELEKEFLYNAYVSKQKRWELARSLMLTERQVKIWFQN 71
K +K Q L+ FL + ++ +L + L ++ WF +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGD 53
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white
cedar (Juniperus ashei) [TaxId: 13101]}
Length = 346
Score = 28.9 bits (64), Expect = 0.30
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 126 IWFQNRRMKNKKNTQRQAAQASNNNNTSNTNNNTSHHGHHHHHIGHAVTNGGLK---HHH 182
W + + + + S SN + H H + +K +
Sbjct: 161 AWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFN 220
Query: 183 Q 183
Q
Sbjct: 221 Q 221
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 24.6 bits (53), Expect = 6.2
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 155 TNNNTSHHGHHHHHIGHAVTNGGLKHHH 182
+NN +S H+ GG
Sbjct: 73 SNNPSSTVPHNVDFHAATGQGGGAAATF 100
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A
[TaxId: 5061]}
Length = 359
Score = 24.7 bits (53), Expect = 8.7
Identities = 4/35 (11%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 150 NNTSNTNNNTSHHGHHHHHIGHAVTNGGLKH--HH 182
NN + ++ S +H+ +
Sbjct: 193 NNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKG 227
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.123 0.368
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 667,183
Number of extensions: 27344
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 74
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)