BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10487
(610 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 155/338 (45%), Gaps = 41/338 (12%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
F LPS + L+L +N+++ + +AF+ + L+ ++L+N+ I + F +
Sbjct: 79 FNGLPS-----LNTLELFDNRLTTVPTQAFEYLS--KLRELWLRNNPIESIPSYAFNRVP 131
Query: 106 ILVEVDLSD-NQIAWLHQDTFLG--------------ND--------RLKVLYLNGNPIT 142
L +DL + ++ ++ + F G D RL+ L L+GN +
Sbjct: 132 SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLD 191
Query: 143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPN 202
+R G F L L+ + L H Q+ ++ ++A L +LE LNL+ N L L +F P
Sbjct: 192 LIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHR 251
Query: 203 LKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTE---PGMLQTKHWDDVKAQEFAC 259
L+ + L+ NPW C+C + + +W LK + S+ C P L+ ++ ++ F C
Sbjct: 252 LERVHLNHNPWHCNCDVL-WLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTC 310
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALF 318
V ++ + G G ++ WL NG ++ + S+ + L
Sbjct: 311 YAPVIVEPPTDLNVTEGMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRV----RISVLH 366
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ +++ T NVT D G+YTC N GN + +L++
Sbjct: 367 DGTLNFT--NVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
++L +N I + DTF L++L L+ N + ++ G F LP L T+EL ++ +V
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
A +L+ L L L N ++ + F P+L+ L L
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 29/188 (15%)
Query: 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL 81
T CP C C + +C +P+++ + + L+L N I
Sbjct: 4 TSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQV------------ 49
Query: 82 NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
+ DTFK+L L + LS N + + F G L L L N +
Sbjct: 50 --------------IRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG-NRLKHLSESVFFPT 200
T + F L L+ + L++ I S+ A + +L L+L RL+++SE+ F
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 201 PNLKTLSL 208
NL+ L+L
Sbjct: 156 VNLRYLNL 163
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/426 (20%), Positives = 167/426 (39%), Gaps = 100/426 (23%)
Query: 12 CLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLT 71
C+ TGS CP C C K +C N +P + ++ ++L+L+ N+I +
Sbjct: 25 CVAETGSAQ--TCPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIK 80
Query: 72 KEAFKSI----------------------GLLNLQRIYLKNSGIREVHRDTFKYLTILVE 109
+FK + GL NL + L ++ + + F YL+ L E
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140
Query: 110 VDLSDN-------------------------QIAWLHQDTFLGNDRLKVLYL-------- 136
+ L +N +++++ + F G L+ L L
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200
Query: 137 --------------NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL 182
+GN ++ +R G F L +L+ + + QI + ++A +L +L +
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTE-- 240
NL N L L +F P +L+ + L NPW C+C + + +W +K S+ C
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL-WLSWWIKDMAPSNTACCARCN 319
Query: 241 -PGMLQTKHWDDVKAQEFAC--------PPNVTIKESMVIR-EAGGNVTMSCYVYGDPEP 290
P L+ ++ ++ F C P ++ + E M + + +++ + P
Sbjct: 320 TPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITP-- 377
Query: 291 TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG 350
NG V+ + ++ + D ++ NVT D G YTC N GN +
Sbjct: 378 ------NGTVMTHGAYKVRIAVLSDG------TLNFTNVTVQDTGMYTCMVSNSVGNTTA 425
Query: 351 EISLDL 356
+L++
Sbjct: 426 SATLNV 431
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 30/236 (12%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C + C+ T +P+ L I + L N I + AF
Sbjct: 5 CPAACTCSNNIVD----CRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF-------- 52
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
S +++ R +DLS+NQI+ L D F G L L L GN ITE
Sbjct: 53 -------SPYKKLRR-----------IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L F L L+ + L +I+ + DA L L L+L N+L+ +++ F P +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC 259
+T+ L NP+ CDCHL+ ++L + + + CT P L K +K+++F C
Sbjct: 155 QTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 210
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 30/236 (12%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C + C+ T +P+ L I + L N I + AF
Sbjct: 5 CPAACTCSNNIVD----CRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF-------- 52
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
S +++ R +DLS+NQI+ L D F G L L L GN ITE
Sbjct: 53 -------SPYKKLRR-----------IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L F L L+ + L +I+ + DA L L L+L N+L+ +++ F P +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC 259
+T+ L NP+ CDCHL+ ++L + + + CT P L K +K+++F C
Sbjct: 155 QTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 210
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 3/204 (1%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
C C GKK C+ + ++PS + +D + LDL + ++ L+ F+ GL L
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKL 61
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+ L + ++ + F LT L + L++NQ+A L F +L LYL GN +
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L +G F +L LK + L Q+ S+ A LT L++L+L+ N+L+ + F L
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 204 KTLSLDGNPW-CCDCHLRSFRNWL 226
+T++L GN + C C + W+
Sbjct: 182 QTITLFGNQFDCSRCEILYLSQWI 205
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 23/223 (10%)
Query: 30 CKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL-------- 81
C K S C TA+PS + +D + LDL +NK+S L +AF + L
Sbjct: 12 CSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 82 --------------NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLG 127
NL+ +++ ++ ++ + F L L E+ L NQ+ L F
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 128 NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN 187
+L L L N + L G F KL LK + L + Q+ V + A LT L++L L+ N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 188 RLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKS 229
+LK + E F LK L L NPW C C+ + WL K
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKK 234
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 29/236 (12%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP+ CRC+ T + C + +P + L LNNN+ + L
Sbjct: 5 CPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVL------------- 47
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+ +GI FK L L +++ S+N+I + + F G + + L N +
Sbjct: 48 -----EATGI-------FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
++ F L LKT+ L+ +I V D+ I L+++ L+L N++ ++ F +L
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC 259
TL+L NP+ C+C+L WL K ++ + C +P L+ DV Q+F C
Sbjct: 156 STLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTC 211
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 3/204 (1%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
C C GKK C+ + ++PS + +D + LDL + ++ L+ F+ GL L
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKL 61
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+ L + ++ + F LT L + L++NQ+A L F +L LYL GN +
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L +G F +L LK + L Q+ S+ A LT L++L+L+ N+L+ + F L
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 204 KTLSLDGNPW-CCDCHLRSFRNWL 226
+T++L GN + C C W+
Sbjct: 182 QTITLFGNQFDCSRCETLYLSQWI 205
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 107/281 (38%), Gaps = 48/281 (17%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI----- 78
CP C C + K + C A+P+ + + Q + L+ N+ISY+ +F+S
Sbjct: 1 CPGACVC-YNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTI 59
Query: 79 ------------------------------------------GLLNLQRIYLKNSGIREV 96
GL +L ++L G++E+
Sbjct: 60 LWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQEL 119
Query: 97 HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLK 156
F+ L L + L DN + L +TF L L+L+GN I + F L L
Sbjct: 120 GPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLD 179
Query: 157 TIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCD 216
+ L + VH A L L +L L N L L V P +L+ L L+ NPW CD
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCD 239
Query: 217 CHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEF 257
C R WL K + S + C P L + + A +
Sbjct: 240 CRARPLWAWLQKFRGSSSEVPCNLPQRLAGRDLKRLAASDL 280
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 96/227 (42%), Gaps = 16/227 (7%)
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
L+ L L+ NPI+ + +L L+ I+L Q+ V A L L LN++GN+L
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Query: 191 HLSESVFFPTPNLKTLSLDGNPWCCDCHLRSF--RNWLLKSKLYSHPLSCTEPGMLQTKH 248
L ESVF NL+TL LD NP CDC L R W L P +C P +Q K
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN-RQQP-TCATPEFVQGKE 367
Query: 249 WDD----VKAQEFACPPNVT--IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLH 302
+ D + F C K V + G V C GDP P ILWL + L
Sbjct: 368 FKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV 427
Query: 303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
++ + G ++ + D G Y C A N GN S
Sbjct: 428 SA------KSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDS 468
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 24/214 (11%)
Query: 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI--- 78
T CP C C + ++ LC F A+P + ++ ++LDL N+I L ++ F S
Sbjct: 1 TGCPPRCEC--SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHL 58
Query: 79 -------------------GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW 119
L NL+ + L+++ ++ + F L+ L ++D+S+N+I
Sbjct: 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118
Query: 120 LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL 179
L F LK L + N + + F L L+ + L+ C + S+ +AL HL L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178
Query: 180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213
L L + + + F LK L + P+
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 30 CKWTLGKKSALCKDANFTALPSTLDSDI---QVLDLNNNKISYLTKEAFKSIGLLNLQRI 86
C + L S N TA+P + + L+L+ N IS T E LL LQ I
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS--TIEGSMLHELLRLQEI 277
Query: 87 YLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
L + V F+ L L +++S NQ+ L + F L+ L L+ NP+
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 8/227 (3%)
Query: 32 WTLGKKSALCKDANFTALPSTLDSDIQVLDLNNN-KISYLTKEAFKSIGLLNLQRIYLKN 90
W A A FT L + ++ LDL++N ++ + F +G L ++L
Sbjct: 62 WLHSNVLARIDAAAFTGL-----ALLEQLDLSDNAQLRSVDPATFHGLG--RLHTLHLDR 114
Query: 91 SGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP 150
G++E+ F+ L L + L DN + L DTF L L+L+GN I+ + F
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174
Query: 151 KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
L L + L ++ VH A L L +L L N L L P L+ L L+
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
Query: 211 NPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEF 257
NPW CDC R WL K + S + C+ P L + + A +
Sbjct: 235 NPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 281
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 8/227 (3%)
Query: 32 WTLGKKSALCKDANFTALPSTLDSDIQVLDLNNN-KISYLTKEAFKSIGLLNLQRIYLKN 90
W A A FT L + ++ LDL++N ++ + F +G L ++L
Sbjct: 61 WLHSNVLARIDAAAFTGL-----ALLEQLDLSDNAQLRSVDPATFHGLG--RLHTLHLDR 113
Query: 91 SGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP 150
G++E+ F+ L L + L DN + L DTF L L+L+GN I+ + F
Sbjct: 114 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 173
Query: 151 KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
L L + L ++ VH A L L +L L N L L P L+ L L+
Sbjct: 174 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 233
Query: 211 NPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEF 257
NPW CDC R WL K + S + C+ P L + + A +
Sbjct: 234 NPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 280
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 41/331 (12%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
+ + L+L +N ++ + AF+ + L+ ++L+N+ I + F + L+ +DL +
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLS--KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 115 -NQIAWLHQDTFLGNDRLKVLYL----------------------NGNPITELRAGQFPK 151
++ ++ + F G LK L L +GN E+R G F
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 152 LPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
L LK + + + Q+ + ++A L +L LNL N L L +F P L L L N
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Query: 212 PWCCDCHLRSFRNWLLKSKLYSHPLSCTE---PGMLQTKHWDDVKAQEFAC--PPNVTIK 266
PW CDC + + W L+ + ++ C P ++ ++ +V F C P +
Sbjct: 301 PWNCDCDIL-WLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAP 359
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSIT 325
+ I E G + C P ++ WLL NG VL ++S L + +++ +
Sbjct: 360 RDLNISE-GRMAELKCRT--PPMSSVKWLLPNGTVLSHAS----RHPRISVLNDGTLNFS 412
Query: 326 LFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+V D G YTC N+ GN++ L++
Sbjct: 413 --HVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
++L +N I + DTF L+VL L N I ++ G F L L T+EL + +
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
A +L+ L L L N ++ + F P+L L L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 34/240 (14%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
F LPS + L+L +N+++ + +AF+ + L+ ++L+N+ I + F +
Sbjct: 79 FNGLPS-----LNTLELFDNRLTTVPTQAFEYLS--KLRELWLRNNPIESIPSYAFNRVP 131
Query: 106 ILVEVDLSD-NQIAWLHQDTFLG--------------ND--------RLKVLYLNGNPIT 142
L +DL + ++ ++ + F G D RL+ L L+GN +
Sbjct: 132 SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLD 191
Query: 143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPN 202
+R G F L L+ + L H Q+ ++ ++A L +LE LNL+ N L L +F P
Sbjct: 192 LIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHR 251
Query: 203 LKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTE---PGMLQTKHWDDVKAQEFAC 259
L+ + L+ NPW C+C + + +W LK + S+ C P L+ ++ ++ F C
Sbjct: 252 LERVHLNHNPWHCNCDV-LWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTC 310
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
++L +N I + DTF L++L L+ N + ++ G F LP L T+EL ++ +V
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
A +L+ L L L N ++ + F P+L+ L L
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 29/188 (15%)
Query: 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL 81
T CP C C + +C +P+++ + + L+L N I
Sbjct: 4 TSCPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQV------------ 49
Query: 82 NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
+ DTFK+L L + LS N + + F G L L L N +
Sbjct: 50 --------------IRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG-NRLKHLSESVFFPT 200
T + F L L+ + L++ I S+ A + +L L+L RL+++SE+ F
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 201 PNLKTLSL 208
NL+ L+L
Sbjct: 156 VNLRYLNL 163
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 32/204 (15%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C T + C+ ++P+ + ++ Q+L L++N+I+ L F S L+NL
Sbjct: 13 CPSQCSCSGT----TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDS--LINL 66
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+ +YL ++ + + F LT L +DL NQ+ L F LK L++ N +TE
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L G IE LT L L L+ N+LK + F +L
Sbjct: 127 LPRG----------IE---------------RLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 204 KTLSLDGNPWCCDCH-LRSFRNWL 226
L GNPW C+C + RNW+
Sbjct: 162 THAYLFGNPWDCECRDIMYLRNWV 185
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 99/248 (39%), Gaps = 57/248 (22%)
Query: 15 TTGSPDWTD--------CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNK 66
T+G PD CP C C + C D A+P + D +LDL NN
Sbjct: 10 TSGIPDLDSLPPTYSAMCPFGCHCHL----RVVQCSDLGLKAVPKEISPDTTLLDLQNND 65
Query: 67 ISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL---------------------T 105
IS L K+ FK GL +L + L N+ I ++H F L +
Sbjct: 66 ISELRKDDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS 123
Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI--TELRAGQFP--KLPYLKTIE-- 159
LVE+ + DN+I + + F G + + + GNP+ + G F KL YL+ E
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183
Query: 160 ----------------LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L H +I ++ + L+ + L L L N+++ + P L
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243
Query: 204 KTLSLDGN 211
+ L LD N
Sbjct: 244 RELHLDNN 251
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 86/237 (36%), Gaps = 53/237 (22%)
Query: 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLN 82
DCP C C+ T + C +P + L LN+N++ ++ +
Sbjct: 1 DCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGL------- 49
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
F L LV+++L NQ+ + + F G ++ L L N I
Sbjct: 50 ------------------FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPN 202
E+ F L LKT+ L QI V + HL +L SLNL
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL------------------ 133
Query: 203 LKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC 259
NP+ C+CHL F WL K L C P ++ D+ EF C
Sbjct: 134 ------ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKC 184
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 85/206 (41%), Gaps = 31/206 (15%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C T + C T++P+ + + LDL N + L F L +L
Sbjct: 1 CPSRCSCSGT----TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDE--LTSL 54
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
++YL + ++ + F LT L ++LS NQ+
Sbjct: 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ------------------------S 90
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L G F KL LK + L Q+ S+ LT L+ L L N+LK + + VF +L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 204 KTLSLDGNPWCCDC-HLRSFRNWLLK 228
+ + L NPW C C +R W+ K
Sbjct: 151 QYIWLHDNPWDCTCPGIRYLSEWINK 176
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 38 SALC--KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIRE 95
S +C + +FT++PS L + ++ LDL+ NKI+Y+ ++ NLQ + LK+S I
Sbjct: 33 SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRINT 90
Query: 96 VHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ-FPKLPY 154
+ D F L L +DLSDN ++ L F LK L L GNP L FP L
Sbjct: 91 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 150
Query: 155 LKTIELQHCQIHS-VHKDALIHLTALESLNLNGNRLK------------------HLSES 195
L+T+ + + + S + + LT+L L + L+ HLSES
Sbjct: 151 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 210
Query: 196 VFF 198
F
Sbjct: 211 AFL 213
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
+DLS N+I ++ L+VL L + I + F L L+ ++L + S+
Sbjct: 57 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 116
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGN 211
L++L+ LNL GN + L + FP NL+TL + GN
Sbjct: 117 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI-GN 158
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 38/150 (25%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTF-LGNDRLKVLYLNGNPI 141
++ + L ++GIR V + L +L D+S+N + D+F L RL+ LY++ N +
Sbjct: 438 MRFLNLSSTGIRVVKTCIPQTLEVL---DVSNNNL-----DSFSLFLPRLQELYISRNKL 489
Query: 142 TEL-RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT 200
L A FP L +K + N+LK + + +F
Sbjct: 490 KTLPDASLFPVLLVMK---------------------------IASNQLKSVPDGIFDRL 522
Query: 201 PNLKTLSLDGNPWCCDC-HLRSFRNWLLKS 229
+L+ + L NPW C C + WL K+
Sbjct: 523 TSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 552
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 24/183 (13%)
Query: 38 SALC--KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIRE 95
S +C + +FT++PS L + ++ LDL+ NKI+Y+ ++ NLQ + LK+S I
Sbjct: 7 SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRINT 64
Query: 96 VHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ-FPKLPY 154
+ D F L L +DLSDN ++ L F LK L L GNP L FP L
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 155 LKTIELQHCQIHS-VHKDALIHLTALESLNLNGNRLK------------------HLSES 195
L+T+ + + + S + + LT+L L + L+ HLSES
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184
Query: 196 VFF 198
F
Sbjct: 185 AFL 187
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
+DLS N+I ++ L+VL L + I + F L L+ ++L + S+
Sbjct: 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGN 211
L++L+ LNL GN + L + FP NL+TL + GN
Sbjct: 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI-GN 132
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 38/150 (25%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTF-LGNDRLKVLYLNGNPI 141
++ + L ++GIR V + L +L D+S+N + D+F L RL+ LY++ N +
Sbjct: 412 MRFLNLSSTGIRVVKTCIPQTLEVL---DVSNNNL-----DSFSLFLPRLQELYISRNKL 463
Query: 142 TEL-RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT 200
L A FP L +K ++ N+LK + + +F
Sbjct: 464 KTLPDASLFPVLLVMK---------------------------ISRNQLKSVPDGIFDRL 496
Query: 201 PNLKTLSLDGNPWCCDC-HLRSFRNWLLKS 229
+L+ + L NPW C C + WL K+
Sbjct: 497 TSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 526
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115
+++ L L NK+ ++ A K L NL + L + ++ + F LT L E+ L +N
Sbjct: 64 NVRYLALGGNKLHDIS--ALKE--LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
Q+ L F L LYL N + L G F KL L ++L + Q+ S+ +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDK 179
Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC 217
LT L+ L+LN N+LK + + VF +L + L NPW C C
Sbjct: 180 LTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCAC 221
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
C N TALP L D +L L+ N + S T + + LNL R L
Sbjct: 17 CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
Query: 92 ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
G ++ + + L +L + +D+S N++ L G L+ LYL GN +
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
L G P L+ + L + + + L L L++L L N L + + FF +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
L L GNPW C+C + FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
C N TALP L D +L L+ N + S T + + LNL R L
Sbjct: 17 CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
Query: 92 ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
G ++ + + L +L + +D+S N++ L G L+ LYL GN +
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
L G P L+ + L + + + L L L++L L N L + + FF +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
L L GNPW C+C + FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
C N TALP L D +L L+ N + S T + + LNL R L
Sbjct: 18 CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 77
Query: 92 ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
G ++ + + L +L + +D+S N++ L G L+ LYL GN +
Sbjct: 78 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
L G P L+ + L + + + L L L++L L N L + + FF +
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 196
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
L L GNPW C+C + FR WL
Sbjct: 197 LLPFAFLHGNPWLCNCEILYFRRWL 221
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
C TALP L D +L L+ N + S T + + LNL R L
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92 ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
G ++ + + L +L + +D+S N++ L G L+ LYL GN +
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
L G P L+ + L + Q+ + L L L++L L N L + + FF +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
L L GNPW C+C + FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
C TALP L D +L L+ N + S T + + LNL R L
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92 ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
G ++ + + L +L + +D+S N++ L G L+ LYL GN +
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
L G P L+ + L + Q+ + L L L++L L N L + + FF +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
L L GNPW C+C + FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
C N TALP L D +L L+ N + S T + + LNL R L
Sbjct: 17 CDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76
Query: 92 ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
G ++ + + L +L + +D+S N++ L G L+ LYL GN +
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
L G P L+ + L + + + L L L++L L N L + + FF +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
L L GNPW C+C + FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
C TALP L D +L L+ N + S T + + LNL R L
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92 ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
G ++ + + L +L + +D+S N++ L G L+ LYL GN +
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
L G P L+ + L + Q+ + L L L++L L N L + + FF +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
L L GNPW C+C + FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
C TALP L D +L L+ N + S T + + LNL R L
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92 ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
G ++ + + L +L + +D+S N++ L G L+ LYL GN +
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
L G P L+ + L + Q+ + L L L++L L N L + + FF +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
L L GNPW C+C + FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 5/174 (2%)
Query: 56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115
+++ L L NK+ ++ A K L NL + L + ++ + F LT L E+ L +N
Sbjct: 64 NVRYLALGGNKLHDIS--ALKE--LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
Q+ L F L L L N + L G F KL L ++L + Q+ S+ +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLK 228
LT L+ L L N+LK + + VF +L+ + L NPW C C +R W+ K
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 136/350 (38%), Gaps = 33/350 (9%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C + C +P +L S +LDL++N +S L E + L NL
Sbjct: 12 CPANCLCASNILS----CSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNL 66
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+ L ++ + + + F + L +DLS N + L + F L+VL L N I
Sbjct: 67 HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALI---HLTALESLNLNGNRLKHL--SESVFF 198
+ F + L+ + L QI + + L L L+L+ N+LK L ++
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186
Query: 199 PTPNLKTLSLDGNPWCCDCHL-RSFRNWL---LKSKL-YSHPLSCTEPGMLQTKHWDDVK 253
P L L NP CDC L + F +W L S + + L C L D
Sbjct: 187 PAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDF- 245
Query: 254 AQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHNSSFDLLEE 311
F C KES G +T+ C T +W+ N QVL S +
Sbjct: 246 ---FNCSE---YKESAWEAHLGDTLTIRCDT-KQQGMTKVWVSPSNEQVLSQGSNGSVSV 298
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINL 361
GD F+K V D G YTCYA N + + L + L
Sbjct: 299 RNGDLFFKK--------VQVEDGGVYTCYAMGETFNETLSVELKVYNFTL 340
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
C + TALP L D +L L+ N + S T + + LNL R L
Sbjct: 17 CDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92 ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
G ++ + + L +L + +D+S N++ L G L+ LYL GN +
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
L G P L+ + L + + + L L L++L L N L + + FF +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
L L GNPW C+C + FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKI---SYLTKEAFKSIGLLNLQRIYLKNS------ 91
C + TALP L D +L L+ N + S T + + LNL R L
Sbjct: 17 CDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL 76
Query: 92 ---GIREVHRDTFKYLTILVE-------VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
G ++ + + L +L + +D+S N++ L G L+ LYL GN +
Sbjct: 77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
L G P L+ + L + + + L L L++L L N L + + FF +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSH 195
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWL 226
L L GNPW C+C + FR WL
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWL 220
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C TL C++ ++P+ + +D Q L LNNN+I+ L F L+NL
Sbjct: 6 CPSQCSCDQTLVN----CQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDH--LVNL 59
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP 140
Q++Y ++ + + F LT L ++DL+DN + + + F L +YL NP
Sbjct: 60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193
L+LN N IT+L G F L L+ + ++ ++ LT L L+LN N LK +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 194 ESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWL 226
F +L + L NPW C+C + RNW+
Sbjct: 98 RGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWV 131
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 26/183 (14%)
Query: 29 RCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYL 88
+C G ++ C++ +P TL + +VL+ + N +
Sbjct: 6 KCTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLP-------------------- 45
Query: 89 KNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ 148
+ TF L L+ +DL+ QI W+H+DTF + +L + L GNP+ +
Sbjct: 46 ------TIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETS 99
Query: 149 FPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
+LK + L I ++ + +L LESL+L N + ++ FPT NLK L
Sbjct: 100 LTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDF 159
Query: 209 DGN 211
N
Sbjct: 160 QNN 162
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 28/165 (16%)
Query: 69 YLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN 128
YLT F+ + ++++ I L+ ++ TF+ T + E+DL+ + L G
Sbjct: 241 YLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGL-PSGIEGM 299
Query: 129 DRLKVLYLNGNPITEL---RAGQFP----------------------KLPYLKTIELQHC 163
+ LK L LN N +L A FP KL L+ ++L H
Sbjct: 300 NSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHS 359
Query: 164 QIHSVH--KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTL 206
I + L +L L+ LNL+ N L + F P L+ L
Sbjct: 360 DIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
L++L L+ + + F L + ++L H + DAL HL L LN+ N ++
Sbjct: 477 LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIR 535
Query: 191 HLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLY----SHPLSCTEPGMLQT 246
+ + ++L NP C C F W K L+ S +C P L+
Sbjct: 536 IIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITW-YKENLHKLEDSEETTCANPPSLRG 594
Query: 247 KHWDDVK 253
DVK
Sbjct: 595 VKLSDVK 601
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 6/178 (3%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLS 113
+ ++ LDL+ N + ++ +GL L+ + ++S ++++ F L L+ +D+S
Sbjct: 373 TSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDA 172
F G L+VL + GN E F +L L ++L CQ+ + A
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 173 LIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLKS 229
L++L+ LN+ N+LK + + +F +L+ + L NPW C C + WL K+
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 547
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 31/181 (17%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
C + NF +P L + LDL+ N + +L +F S
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------------- 50
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
F L +L DLS +I + + L L L GNPI L G F L L+ +
Sbjct: 51 FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
+ S+ + HL L+ LN+ N ++ +F NL+ L L N +C
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 216 D 216
D
Sbjct: 168 D 168
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 1/156 (0%)
Query: 75 FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL 134
FK + ++ L S I + + F + T L ++ L+ N+I + + F G L L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
L+ N + + + F L L+ ++L + I ++ + + L L+ L L+ N+LK + +
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 195 SVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLKS 229
+F +L+ + L NPW C C + WL K+
Sbjct: 389 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 424
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 7/173 (4%)
Query: 25 PDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQ 84
P T C ++ +A+C + +P L + + +DL+ N I+ L + +F + L
Sbjct: 3 PGTSEC--SVIGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFL 59
Query: 85 RIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNG-NPITE 143
++ + G+ + +TF+ L+ L+ + L NQ L F G L+VL L N
Sbjct: 60 KVEQQTPGL-VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118
Query: 144 LRAGQFPK-LPYLKTIELQHCQIHSVH-KDALIHLTALESLNLNGNRLKHLSE 194
+ +G F K L L+ + L+ I + +++ L+L N++K + E
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 37 KSALCK--DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR 94
++ +CK + ++PS L ++ LDL+NN+I+Y++ + +NLQ + L ++GI
Sbjct: 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC--VNLQALVLTSNGIN 89
Query: 95 EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLP 153
+ D+F L L +DLS N ++ L F L L L GNP L F L
Sbjct: 90 TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149
Query: 154 YLKTIELQHCQIHS-VHKDALIHLTALESLNLNGNRLK 190
L+ + + + + + + LT LE L ++ + L+
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
+DLS+N+I ++ L+ L L N I + F L L+ ++L + + ++
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFF 198
L++L LNL GN K L E+ F
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLF 145
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 173 LIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLK 228
L ++ L L + N+LK + + +F +L+ + L NPW C C + WL K
Sbjct: 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 37 KSALCK--DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR 94
++ +CK + ++PS L ++ LDL+NN+I+Y++ + +NLQ + L ++GI
Sbjct: 6 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC--VNLQALVLTSNGIN 63
Query: 95 EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLP 153
+ D+F L L +DLS N ++ L F L L L GNP L F L
Sbjct: 64 TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 123
Query: 154 YLKTIELQHCQIHS-VHKDALIHLTALESLNLNGNRLK 190
L+ + + + + + + LT LE L ++ + L+
Sbjct: 124 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 161
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
+DLS+N+I ++ L+ L L N I + F L L+ ++L + + ++
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFF 198
L++L LNL GN K L E+ F
Sbjct: 91 SSWFKPLSSLTFLNLLGNPYKTLGETSLF 119
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 153 PYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
P LK + + ++ ++ +L L L L ++ N+LK + + +F +L+ + L NP
Sbjct: 451 PQLKELYISRNKLMTLPDASL--LPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508
Query: 213 WCCDC-HLRSFRNWLLKS 229
W C C + WL K+
Sbjct: 509 WDCSCPRIDYLSRWLNKN 526
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%)
Query: 96 VHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYL 155
+H TF L L +DL+ QI W+H+DTF + +L L L GNP+ + L
Sbjct: 45 IHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSL 104
Query: 156 KTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
K + L I ++ + +L LESL L N + + FP NLK L N
Sbjct: 105 KHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNN 160
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 30 CKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLK 89
C K+ C++ + +P TL + + L+ + N + + F L+NL + L
Sbjct: 5 CIEKEANKTYNCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSR--LMNLTFLDLT 62
Query: 90 NSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR---- 145
I +H DTF+ L + L+ N + ++ + + G LK L+L I+ L
Sbjct: 63 RCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPV 122
Query: 146 -----------------AGQFPK-LPY--LKTIELQHCQIHSVHKDALIHL-TALE-SLN 183
+ +FPK P LK ++ Q+ IH + ++ + L A+ SLN
Sbjct: 123 HNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLN 182
Query: 184 LNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
NGN +K + F T ++L+ G P
Sbjct: 183 FNGNNVKGIELGAFDSTI-FQSLNFGGTP 210
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 16/175 (9%)
Query: 42 KDANFTALPSTLDSDIQVLDLNNNK---ISYLTKEAFKSIGLLNLQRIYLKN--SGIREV 96
+D + L + ++ L+L ++ IS T + F + L+L +LK SG+
Sbjct: 238 EDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGM--- 294
Query: 97 HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGN-PITELRAGQFPKLPYL 155
K L +L ++ LS N L Q + L LY+ GN L G KL L
Sbjct: 295 -----KGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNL 349
Query: 156 KTIELQHCQIHSVH--KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
+T++L H I + L +L+ L++LNL+ N L F P L+ L L
Sbjct: 350 QTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDL 404
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
L+VL L+ + + F L + ++L H + D+L HL + LNL N +
Sbjct: 475 LEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSIN 533
Query: 191 HLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLY----SHPLSCTEPGMLQT 246
+S + T++L NP C C F W K L+ S +C P L+
Sbjct: 534 IISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTW-YKENLHKLEGSEETTCANPPSLRG 592
Query: 247 KHWDDVK 253
DVK
Sbjct: 593 VKLSDVK 599
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP V ++S+V A G +VT+ C G PEPT+ W +G+ + N E++E
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE----EDDEKHIF 249
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ S +T+ NV D EY C AEN G I L +
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 77/207 (37%), Gaps = 55/207 (26%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C T C T++P+ + S L+L +NK+ L
Sbjct: 1 CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP------------ 44
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
F LT L ++ LS NQI L F +L +LYL+ N +
Sbjct: 45 --------------HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L G F K LT L+ L L+ N+LK + + +F +L
Sbjct: 91 LPNGVFDK------------------------LTQLKELALDTNQLKSVPDGIFDRLTSL 126
Query: 204 KTLSLDGNPWCCDC-HLRSFRNWLLKS 229
+ + L NPW C C + WL K+
Sbjct: 127 QKIWLHTNPWDCSCPRIDYLSRWLNKN 153
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 49/116 (42%)
Query: 96 VHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYL 155
+ TF L L +DL+ QI W+H+DTF RL L L NP+ + L
Sbjct: 48 IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107
Query: 156 KTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
K + I S+ L + LESL L N + + FPT LK L N
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 28/195 (14%)
Query: 29 RCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYL 88
+C K+ C++ +P TL + + L+ + N + + F L+NL + L
Sbjct: 7 KCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSR--LINLTFLDL 64
Query: 89 KNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLK---------------- 132
I +H DTF+ L + L+ N + ++ + G LK
Sbjct: 65 TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124
Query: 133 --------VLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE--SL 182
LYL N I+ ++ + LK ++ Q+ IH + K+ + L SL
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184
Query: 183 NLNGNRLKHLSESVF 197
NLNGN + + F
Sbjct: 185 NLNGNDIAGIEPGAF 199
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 130 RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
RL++L L+ ++ + F L + ++L H ++ S +AL HL + LNL N +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535
Query: 190 KHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNW 225
+ S+ +T++L NP C C F W
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEW 571
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
+ L + N + ++ F +L L ++L CQI+ +H+D L++L L N L
Sbjct: 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95
Query: 192 LSESVFFPTPNLKTL 206
++E+ LK L
Sbjct: 96 MAETALSGPKALKHL 110
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 100/248 (40%), Gaps = 72/248 (29%)
Query: 44 ANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR----- 98
+NF LP + +DL N I+ + + FK + LQ + L+++ + +H
Sbjct: 332 SNFYGLPK-----VAYIDLQKNHIAIIQDQTFKFLE--KLQTLDLRDNALTTIHFIPSIP 384
Query: 99 DTF---KYLTILVEVDLSDN------------------------QIAWLHQDTFLG---- 127
D F L L +++L+ N QI L+Q+ F
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
Query: 128 -----NDRLKVLYLNGNPI-----TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
N L+ L+L N + TEL F L +L+ + L H ++S+ HLT
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504
Query: 178 ALESLNLNGNRLKHLSES---------------VFFPTPN----LKTLSLDGNPWCCDCH 218
AL L+LN NRL LS + + P P+ L L + N + C+C
Sbjct: 505 ALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE 564
Query: 219 LRSFRNWL 226
L +F NWL
Sbjct: 565 LSTFINWL 572
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 12/159 (7%)
Query: 56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115
D++VL+L NKI+ + EAF GL NLQ + L + + E++ F L + +DL N
Sbjct: 291 DLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
IA + TF ++L+ L L N +T + +P + I L ++ ++ K I+
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPK---IN 400
Query: 176 LTALESLNLNGNRLKHLSESVF-FPTPNLKTLSLDGNPW 213
LTA ++L+ NRL++L F P+L+ L L+ N +
Sbjct: 401 LTA-NLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 72 KEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRL 131
+ F + +++ + L + + ++ F+ L L ++L+ N+I + + F G D L
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
+VL L+ N + EL + F LP + I+LQ I + L L++L+L N L
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT- 375
Query: 192 LSESVFFPTPNLKTLSLDGN 211
++ F P++ + L GN
Sbjct: 376 ---TIHF-IPSIPDIFLSGN 391
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 96 VHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRL--KVLYLNGNPITELRAGQFPKLP 153
+ ++ F+ L L +DL ++I +LH D F G L LY G L+ G F L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 154 YLKTIELQHCQIHSVH-KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
L ++L QI S++ + L +L+S++ + N++ + E P KTLS
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG-KTLSF 178
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 93/238 (39%), Gaps = 59/238 (24%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C T+ + C + LP + D+ L L+ N+ + + KE
Sbjct: 4 CPTECTCLDTVVR----CSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKEL--------- 50
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+K+LT+ +DLS+N+I+ L +F +L L L+ N
Sbjct: 51 ---------------SNYKHLTL---IDLSNNRISTLSNQSFSNMTQLLTLILSYN---- 88
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
++ + L +L L+L+GN + + E F L
Sbjct: 89 --------------------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHP--LSCTEPGMLQTKHWDDVKAQEFAC 259
L++ NP CDC+++ +W +KS+ Y P C PG + K +++F C
Sbjct: 129 SHLAIGANPLYCDCNMQWLSDW-VKSE-YKEPGIARCAGPGEMADKLLLTTPSKKFTC 184
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
+VLYL N IT+L G F +L L ++L + Q+ + LT L L+LN N+LK
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDC 217
+ F +L + L NPW C C
Sbjct: 101 IPRGAFDNLKSLTHIWLLNNPWDCAC 126
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C T + C + ++P+ + + QVL L +N+I+ L F L L
Sbjct: 11 CPSQCSCSGT----TVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR--LTQL 64
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP 140
R+ L N+ + + F LT L ++ L+DNQ+ + + F L ++L NP
Sbjct: 65 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 121
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%)
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
Q +YL ++ I ++ F LT L +DL +NQ+ L F +L L LN N +
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 144 LRAGQFPKLPYLKTIEL 160
+ G F L L I L
Sbjct: 101 IPRGAFDNLKSLTHIWL 117
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
+VLYL N IT+L G F +L L ++L + Q+ + LT L L+LN N+LK
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDC 217
+ F +L + L NPW C C
Sbjct: 93 IPRGAFDNLKSLTHIWLLNNPWDCAC 118
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C T + C + ++P+ + + QVL L +N+I+ L F L L
Sbjct: 3 CPSQCSCSGT----TVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR--LTQL 56
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP 140
R+ L N+ + + F LT L ++ L+DNQ+ + + F L ++L NP
Sbjct: 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%)
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
Q +YL ++ I ++ F LT L +DL +NQ+ L F +L L LN N +
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 144 LRAGQFPKLPYLKTIEL 160
+ G F L L I L
Sbjct: 93 IPRGAFDNLKSLTHIWL 109
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 80 LLNLQRIYLKNSGIREVHRDTF--KYLTILVEVDLSDNQI-AWLHQDTFLGNDRLKVLYL 136
L LQ + L+ +G++ + K ++ L +D+S N + + + T + + VL L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 137 NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESV 196
+ N +T P P +K ++L + +I S+ KD + HL AL+ LN+ N+LK + + V
Sbjct: 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGV 492
Query: 197 FFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLK 228
F +L+ + L NPW C C +R W+ K
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 525
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 130 RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
R K L L+ N I+ELR L L+ + L H +I S+ + LE L+++ NRL
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 190 KHLSESVFFPTPNLKTLSLDGNPW 213
+++S P +L+ L L N +
Sbjct: 113 QNISCC---PMASLRHLDLSFNDF 133
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 30 CKW-----TLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQ 84
C W L S + + F LP ++VLDL+NN+I + K+ L LQ
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLPP----KVKVLDLHNNRIMSIPKDV---THLQALQ 476
Query: 85 RIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115
+ + ++ ++ V F LT L + L DN
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
+VLYL N IT+L G F +L L ++L + Q+ + LT L L+LN N+LK
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDC 217
+ F +L + L NPW C C
Sbjct: 93 IPRGAFDNLRSLTHIWLLNNPWDCAC 118
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C T + C + ++P+ + + QVL L +N+I+ L F L L
Sbjct: 3 CPSQCSCSGT----TVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDR--LTQL 56
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP 140
R+ L N+ + + F LT L ++ L+DNQ+ + + F L ++L NP
Sbjct: 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%)
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
Q +YL ++ I ++ F LT L +DL +NQ+ L F +L L LN N +
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 144 LRAGQFPKLPYLKTIEL 160
+ G F L L I L
Sbjct: 93 IPRGAFDNLRSLTHIWL 109
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 260 PPNVTI--KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP +++ K E G +T SC G PEP I W NG+ L+EE E L
Sbjct: 96 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGK--------LIEENEKYIL 147
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRG 346
+ +T+ N+ + D G Y C A N G
Sbjct: 148 KGSNTELTVRNIINSDGGPYVCRATNKAG 176
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
+VL+L N IT+L G F L L + L Q+ ++ LT L L L+ N+LK
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSKLYSHPL 236
+ VF +L + L NPW C+C + +NW+++ +PL
Sbjct: 103 IPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIVQHASIVNPL 148
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C T + C++ + ++P+ + + QVL L N+I+ L F S L L
Sbjct: 13 CPSQCSCSGT----TVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDS--LTQL 66
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+ L + + + F LT L + L NQ+ + F L +YL NP
Sbjct: 67 TYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP--- 123
Query: 144 LRAGQFPKLPYLKTIELQHCQI 165
+ + YLK +QH I
Sbjct: 124 -WDCECSDILYLKNWIVQHASI 144
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 84/232 (36%), Gaps = 70/232 (30%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIG---- 79
CP C+C + C D +P L D +LDL NNKI+ + FK++
Sbjct: 25 CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 80 ------------------LLNLQRIYLKNSGIRE---------------------VHRDT 100
L+ L+R+YL + ++E V +
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 101 FKYLTILVEVDLSDNQI--AWLHQDTFLGNDRLKV---------------------LYLN 137
F L ++ V+L N + + + F G +L L+L+
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
GN IT++ A L L + L I +V +L + L L+LN N+L
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 133 VLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
+L L N ITE++ G F L L T+ L + +I + A L LE L L+ N+LK L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 193 SESV 196
E +
Sbjct: 116 PEKM 119
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 22/172 (12%)
Query: 49 LPSTLDSDIQVLDLNNNKISYLTKEAFKSIG---LLNLQRIYLKNSGIREVHRDTFKYLT 105
LP + +Q L ++ N+I+ + K F + ++ L LK+SGI K L+
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 106 I------------------LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAG 147
L E+ L N+I + + G + L L L+ N I+ + G
Sbjct: 175 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFP 199
P+L+ + L + ++ V H ++ + L+ N + + + F P
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSNDFCP 285
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 84/232 (36%), Gaps = 70/232 (30%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIG---- 79
CP C+C + C D +P L D +LDL NNKI+ + FK++
Sbjct: 25 CPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 80
Query: 80 ------------------LLNLQRIYLKNSGIRE---------------------VHRDT 100
L+ L+R+YL + ++E V +
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 101 FKYLTILVEVDLSDNQI--AWLHQDTFLGNDRLKV---------------------LYLN 137
F L ++ V+L N + + + F G +L L+L+
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
GN IT++ A L L + L I +V +L + L L+LN N+L
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 133 VLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
+L L N ITE++ G F L L T+ L + +I + A L LE L L+ N+LK L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 193 SESV 196
E +
Sbjct: 116 PEKM 119
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 22/172 (12%)
Query: 49 LPSTLDSDIQVLDLNNNKISYLTKEAFKSIG---LLNLQRIYLKNSGIREVHRDTFKYLT 105
LP + +Q L ++ N+I+ + K F + ++ L LK+SGI K L+
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 106 I------------------LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAG 147
L E+ L N+I + + G + L L L+ N I+ + G
Sbjct: 175 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFP 199
P+L+ + L + ++ V H ++ + L+ N + + + F P
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSNDFCP 285
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 260 PPNVTI--KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP +++ K E G +T SC G PEP I W NG+ L+EE E L
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGK--------LIEENEKYIL 243
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRG 346
+ +T+ N+ + D G Y C A N G
Sbjct: 244 KGSNTELTVRNIINSDGGPYVCRATNKAG 272
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
E G +T SC G PEP I W NG+ L+EE E L + +T+ N+ +
Sbjct: 17 ERGEEMTFSCRASGSPEPAISWFRNGK--------LIEENEKYILKGSNTELTVRNIINS 68
Query: 333 DAGEYTCYAENIRG 346
D G Y C A N G
Sbjct: 69 DGGPYVCRATNKAG 82
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 276 GNVTMSCYVYGDPEPTILW--LLNGQVL--HNSSFDLLEEEEGDALFEKSVSITLFNVTD 331
G VT+ C G+P P I W ++G + S D E +G S S+ + +V
Sbjct: 110 GQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ---HGSSSLHIKDVKL 166
Query: 332 LDAGEYTCYAENIRGNASGEISLDL 356
D+G Y C A + G + LD+
Sbjct: 167 SDSGRYDCEAASRIGGHQKSMYLDI 191
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 60 LDLNNNKISYLTKEAFKSIG-LLNLQRIYLKNSGIREVHR--DTFKYLTILVEVDLSDNQ 116
LD +NN LT F++ G L L+ + L+ + ++E+ + + + L ++D+S N
Sbjct: 329 LDFSNN---LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 117 IAWLHQDTFLGN----DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDA 172
+++ D G+ L L ++ N +T+ P P +K ++L +I S+ K
Sbjct: 386 VSY---DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ- 439
Query: 173 LIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLKS 229
++ L AL+ LN+ N+LK + + +F +L+ + L NPW C C + WL K+
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 497
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 30 CKWT-----LGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQ 84
C WT L S + D F LP I+VLDL++NKI + K+ K L LQ
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCLPPR----IKVLDLHSNKIKSIPKQVVK---LEALQ 447
Query: 85 RIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQD 123
+ + ++ ++ V F LT L Q WLH +
Sbjct: 448 ELNVASNQLKSVPDGIFDRLTSL--------QKIWLHTN 478
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDT-------FL-GNDRL 131
L NL + L N+ I ++ D + L L +D N +A L + FL G L
Sbjct: 479 LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHL 538
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
+L L N + E+ G F L LK+I L ++ + T+L SLNL N +
Sbjct: 539 HILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITS 598
Query: 192 LSESVFFP-TPNLKTLSLDGNPWCCDCHLRS-FRNWLLK-----SKLYSHPLSCTEP 241
+ + VF P NL +L + NP+ C C S F NW+ + S+L +H L C P
Sbjct: 599 VEKDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYL-CNTP 654
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 31/170 (18%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++VL+L +N++S ++ + F + NL + L ++ I ++ + FK L+++DLS N
Sbjct: 75 LKVLNLQHNELSQISDQTF--VFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 117 IAWLHQDT--------------------------FLGNDRLKVLYLNGNPITELRAGQFP 150
++ T FLGN L+ L L+ NP+ E G F
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQ 192
Query: 151 KLPYLKTIELQHCQIHSVHKDAL---IHLTALESLNLNGNRLKHLSESVF 197
+ L + L + Q++ + L + T++++L+L N+L SES F
Sbjct: 193 TIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTF 242
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 24/189 (12%)
Query: 33 TLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYL-------------TKEAFKSIG 79
T+ A C T +P L S+I VL+L +N++ L F SI
Sbjct: 3 TVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSIS 62
Query: 80 LLN---------LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDR 130
L L+ + L+++ + ++ TF + T L E+DL N I + + F
Sbjct: 63 KLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKN 122
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL--TALESLNLNGNR 188
L L L+ N ++ + G +L L+ + L +I ++ + L L ++L L+L+ N
Sbjct: 123 LIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNP 182
Query: 189 LKHLSESVF 197
LK S F
Sbjct: 183 LKEFSPGCF 191
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 9/140 (6%)
Query: 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
++ IQ L L NN++ ++ F + NL ++ L + + +V +F YL L + L
Sbjct: 221 NTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLE 280
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITE---------LRAGQFPKLPYLKTIELQHCQ 164
N I L +F G L+ L L + + F L YL+ + +
Sbjct: 281 YNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNN 340
Query: 165 IHSVHKDALIHLTALESLNL 184
I S + L +L+ L+L
Sbjct: 341 IPSTKSNTFTGLVSLKYLSL 360
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
Query: 70 LTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW-LHQDTFLGN 128
LT E F S+ L + L + I ++ TF +L L +DL N+I L + G
Sbjct: 370 LTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGL 429
Query: 129 DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSV--HKDALIHLTALESLNLNG 186
+ +YL+ N +L F +P L+ + L+ + +V L L L+L+
Sbjct: 430 RNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSN 489
Query: 187 NRLKHLSESVFFPTPNLKTLSLDGN 211
N + +++E + NL+ L N
Sbjct: 490 NNIANINEDLLEGLENLEILDFQHN 514
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
+S ++ LDL++N + + F++IG L + L N+ + +LT
Sbjct: 170 NSSLRKLDLSSNPLKEFSPGCFQTIG--KLFALLLNNAQLN-------PHLT-------- 212
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY--LKTIELQHCQIHSVHKD 171
++ W L N ++ L L N + F L + L ++L + +H V
Sbjct: 213 -EKLCWE-----LSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNG 266
Query: 172 ALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
+ +L +L L+L N ++ LS F+ NL+ LSL
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH 166
LVEVDLS N++ + F+ RL+ LY++ N + L P +P LK ++L H +
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP-IPTLKVLDLSHNHLL 314
Query: 167 SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
V ++ LE+L L+ N + L S LK L+L N W C+ FRN
Sbjct: 315 HVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRN 368
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 73 EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLK 132
++F+ + LLNL + I E+ F Y + ++ + N I +L F L
Sbjct: 72 DSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126
Query: 133 VLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
VL L N ++ L G F P L T+ + + + + D T+L++L L+ NRL H+
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186
Query: 193 SESVF 197
S+
Sbjct: 187 DLSLI 191
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 74 AFKSIGLLNLQRIYLKNSGIREVHR---DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDR 130
F+ I L N + + KNS +R++ D+F+ + +L +L+D QI + F
Sbjct: 44 GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL---NLNDLQIEEIDTYAFAYAHT 100
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
++ LY+ N I L F +P L + L+ + S+ + + L +L+++ N L+
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160
Query: 191 HLSESVFFPTPNLKTLSLDGN 211
+ + F T +L+ L L N
Sbjct: 161 RIEDDTFQATTSLQNLQLSSN 181
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
IQ L + N I YL F+++ LL + + L+ + + + R F L + +S+N
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTV--LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKL 152
+ + DTF L+ L L+ N +T + P L
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 95/238 (39%), Gaps = 27/238 (11%)
Query: 127 GNDRLKVLYL-NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN 185
G + L LY+ N + L L L+ + + + V DA L LNL+
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 186 GNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLK--SKLYSHPLSCTEPGM 243
N L+ LS +L+ L L GNP C C LR + W + + L C G
Sbjct: 89 FNALESLSWKTV-QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGP 147
Query: 244 LQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN 303
L H + P + ++ + G +V + C V G+ L
Sbjct: 148 L--AHMPNASCGV----PTLKVQVPNASVDVGDDVLLRCQV------------EGRGLEQ 189
Query: 304 SSFDLLEEEEGDALFEK----SVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLDL 356
+ + L E E+ + + S+ +TL NVT DL+ TC+AEN G A + +++
Sbjct: 190 AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 250 DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCY-----VYGDPEPTILWLLNGQVLHNS 304
+DV E + NV+ S+ + A V M + V G P P++ WL NG VL+ +
Sbjct: 234 NDVGRAEVSVQVNVSFPASVQLHTA---VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNET 290
Query: 305 SF---DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352
SF + LE + + + + L T ++ G YT A N G AS I
Sbjct: 291 SFIFTEFLEPAANETV--RHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 339
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 63 NNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQ 122
N + +L + +G L+ + + SG+R V D F + L ++LS N + L
Sbjct: 40 NQQHLQHLELRDLRGLG--ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97
Query: 123 DTFLGNDRLKVLYLNGNPI 141
T G L+ L L+GNP+
Sbjct: 98 KTVQGLS-LQELVLSGNPL 115
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH 166
LVEVDLS N++ + F+ RL+ LY++ N + L P +P LK ++L H +
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP-IPTLKVLDLSHNHLL 308
Query: 167 SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
V ++ LE+L L+ N + L S LK L+L N W C+ FRN
Sbjct: 309 HVERNQ-PQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRALFRN 362
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 73 EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLK 132
++F+ + LLNL + I E+ F Y + ++ + N I +L F L
Sbjct: 66 DSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120
Query: 133 VLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
VL L N ++ L G F P L T+ + + + + D T+L++L L+ NRL H+
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180
Query: 193 SESVF 197
S+
Sbjct: 181 DLSLI 185
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 74 AFKSIGLLNLQRIYLKNSGIREVHR---DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDR 130
F+ I L N + + KNS +R++ D+F+ + +L +L+D QI + F
Sbjct: 38 GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL---NLNDLQIEEIDTYAFAYAHT 94
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
++ LY+ N I L F +P L + L+ + S+ + + L +L+++ N L+
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154
Query: 191 HLSESVFFPTPNLKTLSLDGN 211
+ + F T +L+ L L N
Sbjct: 155 RIEDDTFQATTSLQNLQLSSN 175
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
IQ L + N I YL F+++ LL + + L+ + + + R F L + +S+N
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTV--LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKL 152
+ + DTF L+ L L+ N +T + P L
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEG 314
E PP +K V G + T C+V G I W N ++ ++ +
Sbjct: 193 EHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM------ 246
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
L E + ++T+ VT DAG+YTCYA N+ G S L + E
Sbjct: 247 -TLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD-LD 333
G +T+ C V G PE I W L ++ ++ F+ +V+ + N D D
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQ-------FKNNVASLVINKVDHSD 72
Query: 334 AGEYTCYAENIRGNASGEISLDLPEINLATTLSK 367
GEYTC AEN G + L + E L + ++
Sbjct: 73 VGEYTCKAENSVGAVASSAVLVIKERKLPPSFAR 106
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 282 CYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA 341
C + G PE +LW + + SS + E A+ E ++N++ D+G+YTC A
Sbjct: 313 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE------MYNLSVEDSGDYTCEA 366
Query: 342 EN 343
N
Sbjct: 367 HN 368
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP K V G +V + C + G P + W H +L ++ + E
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSW-------HKDKRELRSGKKYKIMSE 436
Query: 320 KSV-SITLFNVTDLDAGEYTCYAENIRGNAS--GEISLDLP 357
+ SI + NV D GEY C A N G+ + G I+L P
Sbjct: 437 NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP 477
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
+E PP+ K V G V C + G + W +G++L + +
Sbjct: 96 KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDA------NLQ 149
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ ++ + G+Y C A N G AS L L E
Sbjct: 150 TSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE 193
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALF 318
PP +K V G + T C+V G I W N ++ ++ + L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM-------TLV 57
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
E + ++T+ VT DAG+YTCYA N+ G S L + E
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 97
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 282 CYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA 341
C + G PE +LW + + SS + E A+ E ++N++ D+G+YTC A
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE------MYNLSVEDSGDYTCEA 174
Query: 342 EN 343
N
Sbjct: 175 HN 176
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP K V G +V + C + G P + W H +L ++ + E
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSW-------HKDKRELRSGKKYKIMSE 244
Query: 320 KSV-SITLFNVTDLDAGEYTCYAENIRGNAS--GEISL 354
+ SI + NV D GEY C A N G+ + G I+L
Sbjct: 245 NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 275 GGNVTMSCYVYGDPEPTILWLL----NGQVLHNSSFDLLEEEEGDALFEKSVSI-TLFNV 329
GG+V C VY D +P I W+ NG L+ + + + + LFNV
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 330 TDLDAGEYTCYAENIRGNAS 349
T+ DAGEY C N G A+
Sbjct: 193 TEADAGEYICKVSNYIGQAN 212
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT+ WL NG+ F G + + S+ + +V D
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSD 87
Query: 334 AGEYTCYAENIRGNASGEISLDLPE 358
G YTC EN G+ + LD+ E
Sbjct: 88 KGNYTCVVENEYGSINHTYHLDVVE 112
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 275 GGNVTMSCYVYGDPEPTILWLL----NGQVLHNSSFDLLEEEEGDALFEKSVSI-TLFNV 329
GG+V C VY D +P I W+ NG L+ + + + + LFNV
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 330 TDLDAGEYTCYAENIRGNAS 349
T+ DAGEY C N G A+
Sbjct: 193 TEADAGEYICKVSNYIGQAN 212
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337
V C G+P PT+ WL NG+ F G + + S+ + +V D G Y
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 91
Query: 338 TCYAENIRGNASGEISLDLPE 358
TC EN G+ + LD+ E
Sbjct: 92 TCVVENEYGSINHTYHLDVVE 112
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 275 GGNVTMSCYVYGDPEPTILWLL----NGQVLHNSSFDLLEEEEGDALFEKSVSI-TLFNV 329
GG+V C VY D +P I W+ NG L+ + + + + LFNV
Sbjct: 132 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 191
Query: 330 TDLDAGEYTCYAENIRGNAS 349
T+ DAGEY C N G A+
Sbjct: 192 TEADAGEYICKVSNYIGQAN 211
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT WL NG+ F G + + S+ +V D
Sbjct: 32 AANTVKFRCPAGGNPXPTXRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIXESVVPSD 86
Query: 334 AGEYTCYAENIRGNASGEISLDLPE 358
G YTC EN G+ + LD+ E
Sbjct: 87 KGNYTCVVENEYGSINHTYHLDVVE 111
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALF 318
PP +K V G + T C+V G I W N ++ ++ + L
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM-------TLV 57
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
E + ++T+ VT DAG+YTCYA N+ G S L +
Sbjct: 58 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 282 CYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA 341
C + G PE +LW + + SS + E A+ E ++N++ D+G+YTC A
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE------MYNLSVEDSGDYTCEA 174
Query: 342 EN 343
N
Sbjct: 175 HN 176
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP K V G +V + C + G P + W H +L ++ + E
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSW-------HKDKRELRSGKKYKIMSE 244
Query: 320 KSV-SITLFNVTDLDAGEYTCYAENIRGNAS--GEISL 354
+ SI + NV D GEY C A N G+ + G I+L
Sbjct: 245 NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 32/200 (16%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLS 113
+ ++ LDL+ N + ++ +GL L+ + ++S ++++ F L L+ +D+S
Sbjct: 78 TSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDA 172
F G L+VL + GN E F +L L ++L CQ+ + A
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 173 LIHLTALESLNLNGNR---------------------LKHL-----SESVFFPTPNLKTL 206
L++L+ LN++ N L H+ E FP+ +L L
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFL 253
Query: 207 SLDGNPWCCDCHLRSFRNWL 226
+L N + C C +SF W+
Sbjct: 254 NLTQNDFACTCEHQSFLQWI 273
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 37/228 (16%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
C++ NF +P L + LDL+ N + +L +F S
Sbjct: 15 CEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------------- 51
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
F L +L DLS +I + + L L L GNPI L G F L L+ +
Sbjct: 52 FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
+ S+ + HL L+ LN+ N ++ +F NL+ L L N +C
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 168
Query: 216 DCH-LRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
D L L L +P++ +PG + +++ +E A N
Sbjct: 169 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN 211
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G N+ C G P PT+ WL NG+ L +S + +E GD F K ++ D+
Sbjct: 308 GSNLRWGCAAAGKPRPTVRWLRNGEPL--ASQNRVEVLAGDLRFSK--------LSLEDS 357
Query: 335 GEYTCYAENIRGN--ASGEISLD 355
G Y C AEN G AS E+++
Sbjct: 358 GMYQCVAENKHGTIYASAELAVQ 380
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G VT+ C+ +G+P P I W +V + S E ++ + +V+ D
Sbjct: 221 GQQVTLECFAFGNPVPRIKWR---KVDGSLSPQWTTAEP---------TLQIPSVSFEDE 268
Query: 335 GEYTCYAENIRG 346
G Y C AEN +G
Sbjct: 269 GTYECEAENSKG 280
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
+T SM + E G + SC G+P PT+ WL GQVL S+ + + + FE S
Sbjct: 18 LTKPRSMTVYE-GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS- 75
Query: 323 SITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+V D G Y+ EN G E +L +
Sbjct: 76 -----SVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
+T SM + E G + SC G+P PT+ WL GQVL S+ + + + FE S
Sbjct: 12 LTKPRSMTVYE-GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS- 69
Query: 323 SITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+V D G Y+ EN G E +L +
Sbjct: 70 -----SVQASDEGNYSVVVENSEGKQEAEFTLTI 98
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVL--HNSSFDLLEEEEGDALFEKSVSIT-LF 327
G NV C VY DP+P I WL +NG + N + + + G +K + + L
Sbjct: 131 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 190
Query: 328 NVTDLDAGEYTCYAENIRG 346
NV+ DAGEYTC A N G
Sbjct: 191 NVSFEDAGEYTCLAGNSIG 209
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 250 DDVKAQEFACPPNVTIKESMVIR----EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305
D+ K P T E M + A V C G P+PT+ WL NG+
Sbjct: 3 DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGK-----E 57
Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
F G + + SI + +V D G YTC EN G+ + LD+ E
Sbjct: 58 FKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVE 110
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P ++ ++ V G NVT+ C+ G+P P I W +LE A
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR-----------KVLEPMPSTAEIS 161
Query: 320 KSVSI-TLFNVTDLDAGEYTCYAENIRGN 347
S ++ +FN+ D G Y C AENIRG
Sbjct: 162 TSGAVLKIFNIQLEDEGIYECEAENIRGK 190
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
P T MV+R G ++ + C G P P I W G DL ++ F K
Sbjct: 225 PQGTASSQMVLR--GMDLLLECIASGVPTPDIAWYKKGG-------DLPSDKAKFENFNK 275
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
++ IT NV++ D+GEY C A N G+ IS+ +
Sbjct: 276 ALRIT--NVSEEDSGEYFCLASNKMGSIRHTISVRV 309
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
+I G + + C G+P+PT+ W++NG+ L ++ + E GD + + I+ V
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAV 381
Query: 330 TDLDAGEYTCYAENIRG 346
Y C N G
Sbjct: 382 -------YQCNTSNEHG 391
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVL--HNSSFDLLEEEEGDALFEKSVSIT-LF 327
G NV C VY DP+P I WL +NG + N + + + G +K + + L
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 328 NVTDLDAGEYTCYAENIRG 346
NV+ DAGEYTC A N G
Sbjct: 190 NVSFEDAGEYTCLAGNSIG 208
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 250 DDVKAQEFACPPNVTIKESMVIR----EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305
D+ K P T E M + A V C G P+PT+ WL NG+
Sbjct: 2 DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGK-----E 56
Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
F G + + SI + +V D G YTC EN G+ + LD+ E
Sbjct: 57 FKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVE 109
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVL--HNSSFDLLEEEEGDALFEKSVSIT-LF 327
G NV C VY DP+P I WL +NG + N + + + G +K + + L
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 328 NVTDLDAGEYTCYAENIRG 346
NV+ DAGEYTC A N G
Sbjct: 190 NVSFEDAGEYTCLAGNSIG 208
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 250 DDVKAQEFACPPNVTIKESMVIR----EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305
D+ K P T E M + A V C G P PT+ WL NG+
Sbjct: 2 DNTKPNRMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGK-----E 56
Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
F G + + SI + +V D G YTC EN G+ + LD+ E
Sbjct: 57 FKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVE 109
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 37/228 (16%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
C + NF +P L + LDL+ N + +L +F S
Sbjct: 16 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------------- 52
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
F L +L DLS +I + + L L L GNPI L G F L L+ +
Sbjct: 53 FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
+ S+ + HL L+ LN+ N ++ +F NL+ L L N +C
Sbjct: 110 LETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
Query: 216 DCH-LRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
D L L L +P++ +PG + +++ +E A N
Sbjct: 170 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN 212
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 235 PLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILW 294
P C L H D V P + TI S G N+++SC+ +P W
Sbjct: 356 PYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSW 415
Query: 295 LLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE--- 351
L++G + ++ LF + N+T+ ++G YTC A N +ASG
Sbjct: 416 LIDGNI----------QQHTQELF-------ISNITEKNSGLYTCQANN---SASGHSRT 455
Query: 352 ------ISLDLPEINLATTLSK 367
+S +LP+ ++++ SK
Sbjct: 456 TVKTITVSAELPKPSISSNNSK 477
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 291 TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN-IRGNAS 349
T LW +NGQ L S L+ G+ ++TLFNVT DA Y C +N + N S
Sbjct: 497 TYLWWVNGQSLPVSP--RLQLSNGNR------TLTLFNVTRNDARAYVCGIQNSVSANRS 548
Query: 350 GEISLDL 356
++LD+
Sbjct: 549 DPVTLDV 555
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
+G N+ +SC+ +P P W +NG + ++ LF + +T +
Sbjct: 573 SGANLNLSCHSASNPSPQYSWRING----------IPQQHTQVLF-------IAKITPNN 615
Query: 334 AGEYTCYAENI 344
G Y C+ N+
Sbjct: 616 NGTYACFVSNL 626
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 238 CTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN 297
C + + D V P TI +G N+ +SC+ +P W +N
Sbjct: 181 CETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVN 240
Query: 298 GQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343
G ++ LF + N+T ++G YTC A N
Sbjct: 241 GTF----------QQSTQELF-------IPNITVNNSGSYTCQAHN 269
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P N+ ESM ++ C V G P PT+ W+ NG V+ S D + G L
Sbjct: 319 PSNLYAYESM-------DIEFECAVSGKPVPTVNWMKNGDVVIPS--DYFQIVGGSNL-- 367
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ V D G Y C AEN GNA L +P+
Sbjct: 368 -----RILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
Query: 266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQV--LHNSSFDLLEEEEGDALFEKSVS 323
+ S VI G + + C V G P P+ WL +V L + + LL +
Sbjct: 227 RPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL----------GGSN 276
Query: 324 ITLFNVTDLDAGEYTCYA----ENIRGNASGEISLDLP 357
+ + NVTD D+G YTC ENI +AS E+++ +P
Sbjct: 277 LLISNVTDDDSGTYTCVVTYKNENI--SASAELTVLVP 312
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G V + C V GDP PTI W N Q L+ D + S ++ + + D+
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD------SRVVVLPSGALQISRLQPGDS 189
Query: 335 GEYTCYAENIRGNASG 350
G Y C A N +G
Sbjct: 190 GVYRCSARNPASTRTG 205
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN--SSFDLLEEEEGD 315
A PP + K GG + C GDP P+I+W NG+ + S + +LE+ G
Sbjct: 6 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG- 64
Query: 316 ALFEKSVSITLFNVTDLDAGE----YTCYAENIRGNA 348
I++ + + AG Y C AEN G+A
Sbjct: 65 --------ISILRIEPVRAGRDDAPYECVAENGVGDA 93
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQV--LHNSSFDLLEEEEGDALF 318
P +T + E G V M+C G+P P I W+ N + N + L
Sbjct: 113 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL---------- 162
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRG 346
K + + N + D G+Y C AEN G
Sbjct: 163 -KDGFLQIENSREEDQGKYECVAENSMG 189
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLSDN 115
++ LDL+ N + ++ +GL L+ + ++S ++++ F L L+ +D+S
Sbjct: 399 LKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455
Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
F G L+VL + GN E F +L L ++L CQ+ + A
Sbjct: 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515
Query: 175 HLTALESLNLNGNR---------------------LKHL-----SESVFFPTPNLKTLSL 208
L++L+ LN++ N L H+ E FP+ +L L+L
Sbjct: 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFLNL 574
Query: 209 DGNPWCCDCHLRSFRNWL 226
N + C C +SF W+
Sbjct: 575 TQNDFACTCEHQSFLQWI 592
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 31/181 (17%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
C + NF +P L + LDL+ N + +L +F S
Sbjct: 38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------------- 74
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
F L +L DLS +I + + L L L GNPI L G F L L+ +
Sbjct: 75 FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
+ S+ + HL L+ LN+ N ++ +F NL+ L L N +C
Sbjct: 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191
Query: 216 D 216
D
Sbjct: 192 D 192
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 37/228 (16%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
C + NF +P L + LDL+ N + +L +F S
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------------- 50
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
F L +L DLS +I + + L L L GNPI L G F L L+ +
Sbjct: 51 FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
+ S+ + HL L+ LN+ N ++ +F NL+ L L N +C
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 216 DCH-LRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
D L L L +P++ +PG + +++ +E A N
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN 210
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 37/228 (16%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
C + NF +P L + LDL+ N + +L +F S
Sbjct: 16 CMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFS----------------------- 52
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
F L +L DLS +I + + L L L GNPI L G F L L+ +
Sbjct: 53 FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
+ S+ + HL L+ LN+ N ++ +F NL+ L L N +C
Sbjct: 110 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
Query: 216 DCH-LRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
D L L L +P++ +PG + +++ +E A N
Sbjct: 170 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN 212
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 32/200 (16%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLS 113
+ ++ LDL+ N + ++ +GL L+ + ++S ++++ F L L+ +D+S
Sbjct: 373 TSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDA 172
F G L+VL + GN E F +L L ++L CQ+ + A
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 173 LIHLTALESLNLNGNR---------------------LKHL-----SESVFFPTPNLKTL 206
L++L+ LN++ N L H+ E FP+ +L L
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFL 548
Query: 207 SLDGNPWCCDCHLRSFRNWL 226
+L N + C C +SF W+
Sbjct: 549 NLTQNDFACTCEHQSFLQWI 568
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 31/181 (17%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
C + NF +P L + LDL+ N + +L +F S
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----------------------- 50
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
F L +L DLS +I + + L L L GNPI L G F L L+ +
Sbjct: 51 FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
+ S+ + HL L+ LN+ N ++ +F NL+ L L N +C
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 216 D 216
D
Sbjct: 168 D 168
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN--SSFDLLEEEEGD 315
A PP + K GG + C GDP P+I+W NG+ + S + +LE+ G
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG- 62
Query: 316 ALFEKSVSITLFNVTDLDAGE----YTCYAENIRGNA 348
I++ + + AG Y C AEN G+A
Sbjct: 63 --------ISILRIEPVRAGRDDAPYECVAENGVGDA 91
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQV--LHNSSFDLLEEEEGDALF 318
P +T + E G V M+C G+P P I W+ N + N + L
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL---------- 160
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRG 346
K + + N + D G+Y C AEN G
Sbjct: 161 -KDGFLQIENSREEDQGKYECVAENSMG 187
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 260 PPN-VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP + + E+M I E G M V G P P + W LNG+ + + + +
Sbjct: 5 PPRFIQVPENMSIDE-GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKM------IVS 57
Query: 319 EKSVSITLFNVTDL-DAGEYTCYAENIRGNASGEISLDL 356
EK + +F V DAG Y C A+N G A+ + LD+
Sbjct: 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 37/228 (16%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
C + NF +P L + LDL+ N + +L +F S
Sbjct: 15 CMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFS----------------------- 51
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
F L +L DLS +I + + L L L GNPI L G F L L+ +
Sbjct: 52 FPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNP----WCC 215
+ S+ + HL L+ LN+ N ++ +F NL+ L L N +C
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 168
Query: 216 DCH-LRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN 262
D L L L +P++ +PG + +++ +E A N
Sbjct: 169 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-----EIRLKELALDTN 211
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 11/182 (6%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
S + L L N I L AF GL +LQ++ + + + +L L E++++
Sbjct: 77 SHLSTLILTGNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 115 NQIAWLHQDTFLGN-DRLKVLYLNGNPI-----TELRAGQFPKLPYLKTIELQHCQIHSV 168
N I + N L+ L L+ N I T+LR ++P L +
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV--LHQMPLLNLSLDLSLNPMNF 192
Query: 169 HKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLL 227
+ L+ L L+ N+LK + + +F +L+ + L NPW C C + WL
Sbjct: 193 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 252
Query: 228 KS 229
K+
Sbjct: 253 KN 254
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 260 PPNVTIKESMV---IREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
PP T K S++ +RE G +V MS V G+P+P + WL N Q + EE EG
Sbjct: 5 PP--TFKVSLMDQSVRE-GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ + DAG YTC A N G E L++
Sbjct: 62 -----CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ-VLHNSSFDLLEEEEGDALF 318
P ++T++E + R M C V G P P + W L+G+ V +S+ +L E G
Sbjct: 16 PGDLTVQEGKLCR-------MDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH-- 66
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
S+ + VT DAG YTC A N G S + L
Sbjct: 67 ----SLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P P+I WL NG+ F G L + S+ + +V D
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLKNGR-----EFRGEHRIGGIKLRHQQWSLVMESVVPSD 191
Query: 334 AGEYTCYAENIRGNASGEISLDLPE 358
G YTC EN G+ +LD+ E
Sbjct: 192 RGNYTCVVENKFGSIRQTYTLDVLE 216
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVL--HNSSFDLLEEEEGDALFEKSVSI-TLF 327
G +V C VY D +P I WL +NG + + + + + G +K + + +L
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296
Query: 328 NVTDLDAGEYTCYAENIRG 346
NVT DAGEYTC A N G
Sbjct: 297 NVTFEDAGEYTCLAGNSIG 315
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP+V ++S + A +VT++C G PEPT+ W +G+ + + EE +
Sbjct: 11 PPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQE-----DNEEKYSF 65
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ + V D EY C AEN G I L +
Sbjct: 66 NYDGSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
+K L+ + I L F L+ + L +I+ + +A LT L+ L L+ N+LK
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 191 HLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLKS 229
+ + +F +L+ + L NPW C C + WL K+
Sbjct: 337 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 376
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 7/173 (4%)
Query: 25 PDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQ 84
P T C ++ +A+C + +P L + + +DL+ N I+ L + +F + L
Sbjct: 3 PGTSEC--SVIGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFL 59
Query: 85 RIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNG-NPITE 143
++ + G+ + +TF+ L+ L+ + L NQ L F G L+VL L N
Sbjct: 60 KVEQQTPGL-VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118
Query: 144 LRAGQFPK-LPYLKTIELQHCQIHSVH-KDALIHLTALESLNLNGNRLKHLSE 194
+ +G F K L L+ + L+ I + +++ L+L N++K + E
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
S ++ DL+ +KI L K F +L+++ L + I ++ + F LT L E+ L
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSH--FTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDT 332
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNP 140
NQ+ + F L+ ++L+ NP
Sbjct: 333 NQLKSVPDGIFDRLTSLQKIWLHTNP 358
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P P+I WL NG+ F G L + S+ + +V D
Sbjct: 29 AANTVRFRCPAAGNPTPSISWLKNGR-----EFRGEHRIGGIKLRHQQWSLVMESVVPSD 83
Query: 334 AGEYTCYAENIRGNASGEISLDLPE 358
G YTC EN G+ +LD+ E
Sbjct: 84 RGNYTCVVENKFGSIRQTYTLDVLE 108
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVL--HNSSFDLLEEEEGDALFEKSVSITLFN 328
G +V C VY D +P I WL +NG + + + + + E V + L N
Sbjct: 129 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLAN 188
Query: 329 VTDLDAGEYTCYAENIRGNASGEISLDL 356
V++ D GEY C A N G A L +
Sbjct: 189 VSERDGGEYLCRATNFIGVAEKAFWLSV 216
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLL--KSKLYSHPLSCT 239
L L GN L L + P L+T L NPW CDC L R WL + L C
Sbjct: 36 LVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCV 95
Query: 240 EPGMLQTKHWDDVKAQEF--ACPP 261
P L+ + + E AC P
Sbjct: 96 APPALRGRLLPYLAEDELRAACAP 119
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Query: 242 GMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL 301
G LQ K +K + P NV I E G + C G+P+P++ W+ L
Sbjct: 93 GALQVK----MKPKITRPPINVKIIE-------GLKAVLPCTTMGNPKPSVSWIKGDSAL 141
Query: 302 H-NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
NS +LE S S+ + NV DAG+Y C A+N G A
Sbjct: 142 RENSRIAVLE----------SGSLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 279 TMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338
T C V P+P I W N ++ E G L T+ +V D D G Y
Sbjct: 26 TFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL-------TILSVEDSDDGIYC 78
Query: 339 CYAENIRGNA 348
C A N G A
Sbjct: 79 CTANNGVGGA 88
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P VTI+E G + ++C V+GDP P + WL N + L + L+ E G
Sbjct: 124 PDVVTIQE-------GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAG----- 171
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGE--ISLDLPE 358
++ T+ V+ D+G+Y +N G+ + + +S+ +PE
Sbjct: 172 RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 273 EAGGNVTMSCYVYGDPEPTILW-LLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD 331
E G V + C+ G+P PTILW +G+ + + + + + E + N
Sbjct: 217 EKGTTVKLECFALGNPVPTILWRRADGKPIARKA----RRHKSNGILE------IPNFQQ 266
Query: 332 LDAGEYTCYAENIRGN--ASGEISL 354
DAG Y C AEN RG A G+++
Sbjct: 267 EDAGSYECVAENSRGKNVAKGQLTF 291
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 12/80 (15%)
Query: 277 NVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336
+V C G P+PT WL NG L + D ++ E+G +++IT+ N++ DAG
Sbjct: 311 SVFWECKANGRPKPTYRWLKNGDPL--LTRDRIQIEQG------TLNITIVNLS--DAGM 360
Query: 337 YTCYAENIRG--NASGEISL 354
Y C AEN G +S E+S+
Sbjct: 361 YQCVAENKHGVIFSSAELSV 380
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337
V +SC V G+P+P I W LNG + + D ++ + S+ I N T DAG Y
Sbjct: 25 VKLSCEVKGNPKPHIRWKLNGTDV-DIGMDFRY-----SVVDGSLLINNPNKTQ-DAGTY 77
Query: 338 TCYAENIRG 346
C A N G
Sbjct: 78 QCIATNSFG 86
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 273 EAGGNVTMSCYVYGDPEPTILW-LLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD 331
E G V + C+ G+P PTILW +G+ + + + + + E + N
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKA----RRHKSNGILE------IPNFQQ 267
Query: 332 LDAGEYTCYAENIRGN--ASGEISL 354
DAG Y C AEN RG A G+++
Sbjct: 268 EDAGSYECVAENSRGKNVAKGQLTF 292
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 12/80 (15%)
Query: 277 NVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336
+V C G P+PT WL NG L + D ++ E+G +++IT+ N++ DAG
Sbjct: 312 SVFWECKANGRPKPTYRWLKNGDPL--LTRDRIQIEQG------TLNITIVNLS--DAGM 361
Query: 337 YTCYAENIRG--NASGEISL 354
Y C AEN G +S E+S+
Sbjct: 362 YQCVAENKHGVIFSSAELSV 381
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337
V +SC V G+P+P I W LNG + + D ++ + S+ I N T DAG Y
Sbjct: 26 VKLSCEVKGNPKPHIRWKLNGTDV-DIGMDFRY-----SVVDGSLLINNPNKTQ-DAGTY 78
Query: 338 TCYAENIRG 346
C A N G
Sbjct: 79 QCIATNSFG 87
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 278 VTMSCYVYGDPEPTILWLLNGQVL--HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG 335
T++C V G PEPTI W +G+ + + ++ ++G F + T+ + D G
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYR----TMQGKKEQDGG 82
Query: 336 EYTCYAENIRGNA 348
EY C A+N G A
Sbjct: 83 EYWCVAKNRVGQA 95
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 286 GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV---SITLFNVTDLDAGEYTCYAE 342
G PEPT++W+ +G L DL G + + V ++ + NV +D G Y C A+
Sbjct: 135 GIPEPTLIWIKDGVPLD----DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQ 190
Query: 343 NIRG 346
N+ G
Sbjct: 191 NLVG 194
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 278 VTMSCYVYGDPEPTILWLLNGQVL--HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG 335
T++C V G PEPTI W +G+ + + ++ ++G F + T+ + D G
Sbjct: 27 ATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYR----TMQGKKEQDGG 82
Query: 336 EYTCYAENIRGNA 348
EY C A+N G A
Sbjct: 83 EYWCVAKNRVGQA 95
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 286 GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV---SITLFNVTDLDAGEYTCYAE 342
G PEPT++W+ +G L DL G + + V ++ + NV +D G Y C A+
Sbjct: 135 GIPEPTLIWIKDGVPLD----DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQ 190
Query: 343 NIRG 346
N+ G
Sbjct: 191 NLVG 194
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 14/101 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P VTI+E G + ++C V+GDP P + WL N + L + L+ E G
Sbjct: 229 PDVVTIQE-------GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAG----- 276
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGE--ISLDLPE 358
++ T+ V+ D+G+Y +N G+ + + +S+ +PE
Sbjct: 277 RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 317
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT+ WL NG+ F G + + S+ + +V D
Sbjct: 25 AANTVKFRCPAGGNPMPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSD 79
Query: 334 AGEYTCYAENIRGNASGEISLDLPE 358
G YTC EN G+ + LD+ E
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDVVE 104
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVLHNSSFDLLE--EEEGDALFEKSVSI-TLF 327
GG+V C VY D +P I W+ NG L+ + G +K + + +
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 328 NVTDLDAGEYTCYAENIRG 346
NVT DAGEYTC A N G
Sbjct: 185 NVTFEDAGEYTCLAGNSIG 203
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT+ WL NG+ F G + + S+ + +V D
Sbjct: 25 AANTVKFRCPAGGNPMPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSD 79
Query: 334 AGEYTCYAENIRGNASGEISLDLPE 358
G YTC EN G+ + LD+ E
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDVVE 104
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVLHNSSFDLLE--EEEGDALFEKSVSI-TLF 327
GG+V C VY D +P I W+ NG L+ + G +K + + +
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 328 NVTDLDAGEYTCYAENIRG 346
NVT DAGEYTC A N G
Sbjct: 185 NVTFEDAGEYTCLAGNSIG 203
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT+ WL NG+ F G + + S+ + +V D
Sbjct: 25 AANTVKFRCPAGGNPMPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSD 79
Query: 334 AGEYTCYAENIRGNASGEISLDLPE 358
G YTC EN G+ + LD+ E
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDVVE 104
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVLHNSSFDLLE--EEEGDALFEKSVSI-TLF 327
GG+V C VY D +P I W+ NG L+ + G +K + + +
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 328 NVTDLDAGEYTCYAENIRG 346
NVT DAGEYTC A N G
Sbjct: 185 NVTFEDAGEYTCLAGNSIG 203
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT+ WL NG+ F G + + S+ + +V D
Sbjct: 23 AANTVKFRCPAGGNPMPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSD 77
Query: 334 AGEYTCYAENIRGNASGEISLDLPE 358
G YTC EN G+ + LD+ E
Sbjct: 78 KGNYTCVVENEYGSINHTYHLDVVE 102
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVLHNSSFDLLE--EEEGDALFEKSVSI-TLF 327
GG+V C VY D +P I W+ NG L+ + G +K + + +
Sbjct: 123 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 182
Query: 328 NVTDLDAGEYTCYAENIRG 346
NVT DAGEYTC A N G
Sbjct: 183 NVTFEDAGEYTCLAGNSIG 201
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT+ WL NG+ F G + + S+ + +V D
Sbjct: 24 AANTVKFRCPAGGNPMPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSD 78
Query: 334 AGEYTCYAENIRGNASGEISLDLPE 358
G YTC EN G+ + LD+ E
Sbjct: 79 KGNYTCVVENEYGSINHTYHLDVVE 103
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVLHNSSFDLLE--EEEGDALFEKSVSI-TLF 327
GG+V C VY D +P I W+ NG L+ + G +K + + +
Sbjct: 124 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 183
Query: 328 NVTDLDAGEYTCYAENIRG 346
NVT DAGEYTC A N G
Sbjct: 184 NVTFEDAGEYTCLAGNSIG 202
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 170 KDALIHLTALES----LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNW 225
+ L L AL + L L GN L + F P L+T L NPW CDC L R W
Sbjct: 19 RRGLTALPALPARTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLW 78
Query: 226 L--LKSKLYSHPLSCTEPGMLQTK 247
L + L C P L+ +
Sbjct: 79 LEDRPERAPYRDLRCVAPPALRGR 102
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
L L L N I E+ + F L L++IE ++ + + + L+ LNL N+LK
Sbjct: 149 LSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK 207
Query: 191 HLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLKS 229
+ + +F +L+ + L NPW C C + WL K+
Sbjct: 208 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 247
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G ++ SC G P P + WL +GQ L +S + +E G+ F K V D+
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPL--ASQNRIEVSGGELRFSKLVL--------EDS 358
Query: 335 GEYTCYAENIRGN--ASGEISL 354
G Y C AEN G AS E+++
Sbjct: 359 GMYQCVAENKHGTVYASAELTV 380
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G VT+ C+ +G+P P I W L+ + + + NV D
Sbjct: 222 GQMVTLECFAFGNPVPQIKW------------RKLDGSQTSKWLSSEPLLHIQNVDFEDE 269
Query: 335 GEYTCYAENIRGN 347
G Y C AENI+G
Sbjct: 270 GTYECEAENIKGR 282
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 277 NVTMSCYVYGDPEPTILWLLNGQVLH---NSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
VT++C +P T W +NG L +S + L+ GD + V D
Sbjct: 24 KVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV---AGDLVISNPVKAK-------D 73
Query: 334 AGEYTCYAENIRGN-ASGEISLDL 356
AG Y C A N RG S E SL
Sbjct: 74 AGSYQCVATNARGTVVSREASLRF 97
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
++L+ NQ+ L F +L L + N I++L KLP LK + LQH ++ +
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
T L L+L N ++ + + F NL TL L N
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 94/221 (42%), Gaps = 43/221 (19%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT--FKYLTILVEVDLSDNQIA- 118
L+ NK LT+ +F + +LQR+ L+ ++ V F+ L L +DLS+N IA
Sbjct: 447 LSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 504
Query: 119 -------------------------WLHQD-----TFL-GNDRLKVLYLNGNPITELRAG 147
W H + FL G L +L L N E+
Sbjct: 505 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 564
Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTL 206
F L LK I+L ++++ + +L+SLNL N + + + VF P NL L
Sbjct: 565 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 624
Query: 207 SLDGNPWCCDCH-LRSFRNWLLKS-----KLYSHPLSCTEP 241
+ NP+ C C + F NW+ ++ +L SH L T P
Sbjct: 625 DMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 665
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 57 IQVLDLNNNKISYLTKEA------FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEV 110
+++LDL +N ++ L K A + GL +L + L+++G E+ + FK L L +
Sbjct: 516 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 575
Query: 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQF 149
DL N + L F LK L L N IT + F
Sbjct: 576 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 614
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 56 DIQVLDLNNNKISY--LTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
+++ L L+N+ S LT E F S+ L + L + I ++ D F +L L +DL
Sbjct: 364 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 423
Query: 114 DNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSV 168
N+I L + G + + +YL+ N +L F +P L+ + L+ + +V
Sbjct: 424 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 479
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 15/157 (9%)
Query: 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
++ I+ L L+N+++S + F + NL + L + + V D+F +L L L
Sbjct: 231 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 290
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL 173
N I L + G V YLN ++ LP + Q
Sbjct: 291 YNNIQHLFSHSLHG--LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ------------ 336
Query: 174 IHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
L LE LN+ N + + ++F NLK LSL
Sbjct: 337 -WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 372
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
S + +L+L NKIS + +AF +G L + + L G +E+ ++ L + E+ LS
Sbjct: 391 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSY 449
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY--LKTIELQHCQIHSVHKDA 172
N+ L +++F L+ L L + + + P P L ++L + I +++ D
Sbjct: 450 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 509
Query: 173 LIHLTALESLNLNGNRLKHL 192
L L LE L+L N L L
Sbjct: 510 LEGLEKLEILDLQHNNLARL 529
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
++L+ NQ+ L F +L L + N I++L KLP LK + LQH ++ +
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
T L L+L N ++ + + F NL TL L N
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 94/221 (42%), Gaps = 43/221 (19%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT--FKYLTILVEVDLSDNQIA- 118
L+ NK LT+ +F + +LQR+ L+ ++ V F+ L L +DLS+N IA
Sbjct: 442 LSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 499
Query: 119 -------------------------WLHQD-----TFL-GNDRLKVLYLNGNPITELRAG 147
W H + FL G L +L L N E+
Sbjct: 500 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 559
Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTL 206
F L LK I+L ++++ + +L+SLNL N + + + VF P NL L
Sbjct: 560 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 619
Query: 207 SLDGNPWCCDCH-LRSFRNWLLKS-----KLYSHPLSCTEP 241
+ NP+ C C + F NW+ ++ +L SH L T P
Sbjct: 620 DMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 660
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 57 IQVLDLNNNKISYLTKEA------FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEV 110
+++LDL +N ++ L K A + GL +L + L+++G E+ + FK L L +
Sbjct: 511 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 570
Query: 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQF 149
DL N + L F LK L L N IT + F
Sbjct: 571 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 609
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 56 DIQVLDLNNNKISY--LTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
+++ L L+N+ S LT E F S+ L + L + I ++ D F +L L +DL
Sbjct: 359 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 418
Query: 114 DNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSV 168
N+I L + G + + +YL+ N +L F +P L+ + L+ + +V
Sbjct: 419 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 474
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 15/157 (9%)
Query: 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
++ I+ L L+N+++S + F + NL + L + + V D+F +L L L
Sbjct: 226 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 285
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL 173
N I L + G V YLN ++ LP + Q
Sbjct: 286 YNNIQHLFSHSLHG--LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ------------ 331
Query: 174 IHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
L LE LN+ N + + ++F NLK LSL
Sbjct: 332 -WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 367
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
S + +L+L NKIS + +AF +G L + + L G +E+ ++ L + E+ LS
Sbjct: 386 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSY 444
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY--LKTIELQHCQIHSVHKDA 172
N+ L +++F L+ L L + + + P P L ++L + I +++ D
Sbjct: 445 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 504
Query: 173 LIHLTALESLNLNGNRLKHL 192
L L LE L+L N L L
Sbjct: 505 LEGLEKLEILDLQHNNLARL 524
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
++L+ NQ+ L F +L L + N I++L KLP LK + LQH ++ +
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
T L L+L N ++ + + F NL TL L N
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 94/221 (42%), Gaps = 43/221 (19%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT--FKYLTILVEVDLSDNQIA- 118
L+ NK LT+ +F + +LQR+ L+ ++ V F+ L L +DLS+N IA
Sbjct: 437 LSYNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494
Query: 119 -------------------------WLHQD-----TFL-GNDRLKVLYLNGNPITELRAG 147
W H + FL G L +L L N E+
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554
Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTL 206
F L LK I+L ++++ + +L+SLNL N + + + VF P NL L
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614
Query: 207 SLDGNPWCCDCH-LRSFRNWLLKS-----KLYSHPLSCTEP 241
+ NP+ C C + F NW+ ++ +L SH L T P
Sbjct: 615 DMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 57 IQVLDLNNNKISYLTKEA------FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEV 110
+++LDL +N ++ L K A + GL +L + L+++G E+ + FK L L +
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565
Query: 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQF 149
DL N + L F LK L L N IT + F
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 56 DIQVLDLNNNKISY--LTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
+++ L L+N+ S LT E F S+ L + L + I ++ D F +L L +DL
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413
Query: 114 DNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSV 168
N+I L + G + + +YL+ N +L F +P L+ + L+ + +V
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 15/157 (9%)
Query: 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
++ I+ L L+N+++S + F + NL + L + + V D+F +L L L
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL 173
N I L + G V YLN ++ LP + Q
Sbjct: 281 YNNIQHLFSHSLHG--LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ------------ 326
Query: 174 IHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
L LE LN+ N + + ++F NLK LSL
Sbjct: 327 -WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
S + +L+L NKIS + +AF +G L + + L G +E+ ++ L + E+ LS
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSY 439
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY--LKTIELQHCQIHSVHKDA 172
N+ L +++F L+ L L + + + P P L ++L + I +++ D
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499
Query: 173 LIHLTALESLNLNGNRLKHL 192
L L LE L+L N L L
Sbjct: 500 LEGLEKLEILDLQHNNLARL 519
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
+GG + C GDP P I+W G+ + N F+++E ++G + + T D
Sbjct: 20 SGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR----TPRD 75
Query: 334 AGEYTCYAENIRGNASGEISL 354
Y C A N GEIS+
Sbjct: 76 EAIYECVAS----NNVGEISV 92
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 27/98 (27%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL----------NGQV--LHNSSFDL 308
P + + + + E TM C G+P+P I W NG++ L + S
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA 168
Query: 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG 346
L+ E+ + + D G+Y C A N G
Sbjct: 169 LQIEQSE---------------ESDQGKYECVATNSAG 191
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 19/89 (21%)
Query: 265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS----SFDLLEEEEGDALFEK 320
+K+ VI G + + C V G P P I WLLNGQ + + + E DAL E
Sbjct: 18 LKDCAVIE--GQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPE- 74
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRGNAS 349
D G YTC AEN G S
Sbjct: 75 ------------DHGTYTCLAENALGQVS 91
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G ++ +SC G+P P I+W + + L E+ G L + + ++T+ V D
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETL--------VEDSGIVLKDGNRNLTIRRVRKEDE 732
Query: 335 GEYTCYAENIRGNASGEISLDLPEINLATTLSKT 368
G YTC A ++ G A E + T L +T
Sbjct: 733 GLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 16/110 (14%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
ES+V G V + G P P I W NG L E + + +T+
Sbjct: 337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPL-----------ESNHTIKAGHVLTI 385
Query: 327 FNVTDLDAGEYTCYAEN--IRGNASGEISLDL---PEINLATTLSKTDSW 371
V++ D G YT N + S +SL + P+I + +S DS+
Sbjct: 386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY 435
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 284 VYGDPEPTILWLLNGQVLHNSSF---DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY 340
V G P P++ WL NG VL+ +SF + LE + + + + L T ++ G YT
Sbjct: 24 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV--RHGCLRLNQPTHVNNGNYTLL 81
Query: 341 AENIRGNASGEI 352
A N G AS I
Sbjct: 82 AANPFGQASASI 93
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWL----LNGQVLHNSSFDLLE--EEEGDALFEKSVSI-TLF 327
GG+V C VY D +P I W+ NG L+ + G +K + + +
Sbjct: 125 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 184
Query: 328 NVTDLDAGEYTCYAENIRG 346
NVT DAGEYTC A N G
Sbjct: 185 NVTFEDAGEYTCLAGNSIG 203
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT WL NG+ F G + + S+ +V D
Sbjct: 25 AANTVKFRCPAGGNPXPTXRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIXESVVPSD 79
Query: 334 AGEYTCYAENIRGNASGEISLDLPE 358
G YTC EN G+ + LD+ E
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDVVE 104
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 284 VYGDPEPTILWLLNGQVLHNSSF---DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY 340
V G P P++ WL NG VL+ +SF + LE + + + + L T ++ G YT
Sbjct: 28 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV--RHGCLRLNQPTHVNNGNYTLL 85
Query: 341 AENIRGNASGEI 352
A N G AS I
Sbjct: 86 AANPFGQASASI 97
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 277 NVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336
N T+ C V G P+P + W G+ + +E + + + +VTD DA
Sbjct: 19 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ----LIIASVTDDDATV 74
Query: 337 YTCYAENIRGNASGEISLDL---PEINLATTLSKTDSWYML 374
Y A N G+ SG SL++ +I+L TL + + L
Sbjct: 75 YQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 115
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G ++ +SC G+P P I+W + + L E+ G L + + ++T+ V D
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNET--------LVEDSGIVLKDGNRNLTIRRVRKEDE 76
Query: 335 GEYTCYAENIRGNASGE 351
G YTC A ++ G A E
Sbjct: 77 GLYTCQACSVLGCAKVE 93
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 284 VYGDPEPTILWLLNGQVLHNSSF---DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY 340
V G P P++ WL NG VL+ +SF + LE + + + + L T ++ G YT
Sbjct: 24 VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV--RHGCLRLNQPTHVNNGNYTLL 81
Query: 341 AENIRGNASGEI 352
A N G AS I
Sbjct: 82 AANPFGQASASI 93
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP + S + + G +T++C G+P P + W G+ +H+ E D L
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
++ + +V D G YT N G+ S +++ + I
Sbjct: 65 ----TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 102
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 277 NVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336
N T+ C V G P+P + W G+ + +E + + + +VTD DA
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ----LIIASVTDDDATV 76
Query: 337 YTCYAENIRGNASGEISLDL---PEINLATTLSKTDSWYML 374
Y A N G+ SG SL++ +I+L TL + + L
Sbjct: 77 YQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP + S + + G +T++C G+P P + W G+ +H+ E D L
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
++ + +V D G YT N G+ S +++ + I
Sbjct: 63 ----TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT+ WL NG+ F G + + S+ + +V D
Sbjct: 22 AANTVKFRCPAGGNPMPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSD 76
Query: 334 AGEYTCYAENIRGNASGEISLDL 356
G YTC EN G+ + LD+
Sbjct: 77 KGNYTCVVENEYGSINHTYHLDV 99
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT+ WL NG+ F G + + S+ + +V D
Sbjct: 26 AANTVKFRCPAGGNPMPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSD 80
Query: 334 AGEYTCYAENIRGNASGEISLDL 356
G YTC EN G+ + LD+
Sbjct: 81 KGNYTCVVENEYGSINHTYHLDV 103
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
A V C G+P PT+ WL NG+ F G + + S+ + +V D
Sbjct: 27 AANTVKFRCPAGGNPMPTMRWLKNGK-----EFKQEHRIGGYKVRNQHWSLIMESVVPSD 81
Query: 334 AGEYTCYAENIRGNASGEISLDL 356
G YTC EN G+ + LD+
Sbjct: 82 KGNYTCVVENEYGSINHTYHLDV 104
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP + I +GG + C GDP+P + W G+ +++ F+ +E +E
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + T D Y C A+ N+ GEI++
Sbjct: 66 RIQPLR----TPRDENVYECVAQ----NSVGEITV 92
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
PN+ + + + E TM C G+P+P I W + + S+ + G +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASN------GRIKQLR 162
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRG 346
S ++ + + + D G+Y C A N G
Sbjct: 163 SGALQIESSEETDQGKYECVATNSAG 188
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP K I +GG + C GDP+P + W G+ +++ F+ +E +E
Sbjct: 6 PPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + T D Y C A+N G +
Sbjct: 66 RIQPLR----TPRDENIYECVAQNPHGEVT 91
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
PN+ + + + E TM C G+P+P I W + + S+ + G +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSN------GRIKQLR 162
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRG 346
S + + + + D G+Y C A N G
Sbjct: 163 SGGLQIESSEETDQGKYECVASNSAG 188
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP + I +GG + C GDP+P + W G+ +++ F+ +E +E
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + T D Y C A+ N+ GEI++
Sbjct: 66 RIQPLR----TPRDENVYECVAQ----NSVGEITV 92
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
PN+ + + + E TM C G+P+P I W + + S+ + G +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASN------GRIKQLR 162
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRG 346
S ++ + + + D G+Y C A N G
Sbjct: 163 SGALQIESSEETDQGKYECVATNSAG 188
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
+GG + C G+P+P I W+ G+ + + F+++E ++G + I V D
Sbjct: 20 SGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV---LRIQPLRV-QRD 75
Query: 334 AGEYTCYAENIRG--NASGEISL 354
Y C A N G N S ++S+
Sbjct: 76 EAIYECTATNSLGEINTSAKLSV 98
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
P++ + + + E TM C G+P+P I W + + ++ + G +
Sbjct: 109 PSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSN------GRIKQLR 162
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRG 346
S ++ + + + D G+Y C A N G
Sbjct: 163 SGALQIESSEESDQGKYECVATNSAG 188
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 31/184 (16%)
Query: 193 SESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSC--------TEPGML 244
+++V F P + T GNP +++ +W+ K H S + GM
Sbjct: 352 TQTVDFGRPAVFTCQYTGNP------IKTV-SWMKDGKAIGHSESVLRIESVKKEDKGMY 404
Query: 245 QTKHWDDVKAQEFAC---------PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL 295
Q +D ++ E + PP + E G +V + C G+P P I W
Sbjct: 405 QCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWE 464
Query: 296 LNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL---DAGEYTCYAENIRGNASGEI 352
L+G+ + N+ + G + ++ N+T + D G Y C A++ G A
Sbjct: 465 LDGKKIANND----RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA 520
Query: 353 SLDL 356
L++
Sbjct: 521 KLNV 524
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 11/150 (7%)
Query: 207 SLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIK 266
+LDG D + + R S L + + G + Q+F P NV +
Sbjct: 655 TLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP 714
Query: 267 ESMVIR------EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
++ G + + C G P+P + W + + ++ + + ++ D + +
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTW---KKAVGDTPGEYKDLKKSDNIRVE 771
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRGNASG 350
++ + N+ + G Y C E I G SG
Sbjct: 772 EGTLHVDNIQKTNEGYYLC--EAINGIGSG 799
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 17/191 (8%)
Query: 28 CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIY 87
C C + LC+++ T +PS L + L K+ + K AF G +L++I
Sbjct: 7 CHC----SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIE 60
Query: 88 LKNSGIREV-HRDTFKYLTILVEVDLSD-NQIAWLHQDTFLGNDRLKVLYLNGNPITELR 145
+ + + EV D F L L E+ + N + +++ + F L+ L ++ I L
Sbjct: 61 ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL- 119
Query: 146 AGQFPKLPYLKTIEL---QHCQIHSVHKDALIHLTALES--LNLNGNRLKHLSESVFFPT 200
K+ L+ + L + IH++ +++ + L+ ES L LN N ++ + S F T
Sbjct: 120 -PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKNGIQEIHNSAFNGT 177
Query: 201 PNLKTLSLDGN 211
L L+L N
Sbjct: 178 -QLDELNLSDN 187
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP + I +GG + C GDP+P + W G+ +++ F+ +E +E
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + T D Y C A+ N+ GEI++
Sbjct: 66 RIQPLR----TPRDENVYECVAQ----NSVGEITV 92
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL-D 333
GGNV ++C G P P + W+ + DL E+ + V + +TD+ D
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAE-------DLTPED------DMPVGRNVLELTDVKD 266
Query: 334 AGEYTCYA 341
+ YTC A
Sbjct: 267 SANYTCVA 274
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
PN+ + + + E TM C G+P+P I W + + S+ + G +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASN------GRIKQLR 162
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRG 346
S ++ + + + D G+Y C A N G
Sbjct: 163 SGALQIESSEETDQGKYECVATNSAG 188
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 276 GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG 335
G + C GDP P I WL G +E+G ++ + N+ D G
Sbjct: 24 GTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG--------TLQIKNLRISDTG 75
Query: 336 EYTCYAENIRGNASGEISLDLPE 358
YTC A + G S LD+ E
Sbjct: 76 TYTCVATSSSGETSWSAVLDVTE 98
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
+S+V+ E G T ++ G P P + W +GQV+ S+ ++ D +T+
Sbjct: 13 QSVVVLE-GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG----RAKLTI 67
Query: 327 FNVTDLDAGEYTCYAENIRGNASGEISL 354
VT ++G Y+ A N G A+ L
Sbjct: 68 PAVTKANSGRYSLKATNGSGQATSTAEL 95
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 252 VKAQEFACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310
VKA+ PPN + +SM +R+ G V + V G P P + + +G + SS D
Sbjct: 97 VKAE--TAPPNFVQRLQSMTVRQ-GSQVRLQVRVTGIPTPVVKFYRDGAEIQ-SSLDFQI 152
Query: 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+EGD S+ + D+G Y+ A N G A+ L
Sbjct: 153 SQEGDLY-----SLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 284 VYGDPEPTILWLLNGQVLHNSSFDLLE-EEEGDALFEKSVSITLFN-VTDLDAGEYTCYA 341
V G+P PT+ WL NGQ L S +E +EG E S LFN T + G YT A
Sbjct: 29 VRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG----EISEGCLLFNKPTHYNNGNYTLIA 84
Query: 342 ENIRGNASGEIS 353
+N G A+ I+
Sbjct: 85 KNPLGTANQTIN 96
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
+S+V+ E G T ++ G P P + W +GQV+ S+ ++ D +T+
Sbjct: 13 QSVVVLE-GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG----RAKLTI 67
Query: 327 FNVTDLDAGEYTCYAENIRGNASGEISL 354
VT ++G Y+ A N G A+ L
Sbjct: 68 PAVTKANSGRYSLKATNGSGQATSTAEL 95
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 252 VKAQEFACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310
VKA+ PPN + +SM +R+ G V + V G P P + + +G + SS D
Sbjct: 97 VKAE--TAPPNFVQRLQSMTVRQ-GSQVRLQVRVTGIPTPVVKFYRDGAEIQ-SSLDFQI 152
Query: 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+EGD S+ + D+G Y+ A N G A+ L
Sbjct: 153 SQEGDLY-----SLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 277 NVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336
N T+ C V G P+P + W G+ + +E + + + +VTD DA
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ----LIIASVTDDDATV 76
Query: 337 YTCYAENIRGNASGEISLDL---PEINLATTL 365
Y A N G+ SG SL++ +I+L TL
Sbjct: 77 YQVRATNQGGSVSGTASLEVEVPAKIHLPKTL 108
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEE----EGD 315
PP + S +I G T++C G P PTI W G+ + D G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDL 356
F + I + D G Y C A N G A S + SL++
Sbjct: 69 LFF---LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEE----EGD 315
PP + S +I G T++C G P PTI W G+ + D G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDL 356
F + I + D G Y C A N G A S + SL++
Sbjct: 69 LFF---LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 268 SMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
S V+ G M C G PEPTI W +G L +++ + + + + +
Sbjct: 119 SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL---------DDKDERITIRGGKLMI 169
Query: 327 FNVTDLDAGEYTCYAENIRGNASGEIS 353
DAG+Y C N+ G E++
Sbjct: 170 TYTRKSDAGKYVCVGTNMVGERESEVA 196
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
E P++T + + G + M C G P P +W + N F+ + G
Sbjct: 88 EVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMW----RKKENGVFEEISNSSGR 143
Query: 316 ALFEKSVSITLFNVTDL----DAGEYTCYAENIRGNAS 349
+ T N+ +L D GEY C A N G+AS
Sbjct: 144 FFIINKENYTELNIVNLQITEDPGEYECNATNSIGSAS 181
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTI--LWL-LNGQVLHNSSFDLLEEEEGDAL 317
P V++ E+ + + G T+ C + D ++ +WL +N Q H + GD
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTI-KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFN 247
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+E+ ++T+ + D+G + CYA N G+A+ +L + E
Sbjct: 248 YERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
+ +I NS I+ V +YL L ++LS+NQI + +L N + L+LNGN +T
Sbjct: 46 IDQIIANNSDIKSVQ--GIQYLPNLTSLNLSNNQITDISPIQYLPN--VTKLFLNGNKLT 101
Query: 143 ELR-AGQFPKLPYLKTIE-------------------LQHCQIHSVHKDALIHLTALESL 182
+++ L +L E L+H I + + L+HL LESL
Sbjct: 102 DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 159
Query: 183 NLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
L N++ + +V L TLSL+ N
Sbjct: 160 YLGNNKITDI--TVLSRLTKLDTLSLEDN 186
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
L+ +YL N+ I ++ LT L + L DNQI+ + G +L+ LYL+ N I+
Sbjct: 156 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS 211
Query: 143 ELRAGQFPKLPYLKTIEL--QHC 163
+LRA L L +EL Q C
Sbjct: 212 DLRA--LAGLKNLDVLELFSQEC 232
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 26/116 (22%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNG-----------QVLHNSSFDL 308
P +++ S+ I G ++C + G P W +G + NSSF
Sbjct: 108 PTISVPSSVTI---GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF-T 163
Query: 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLPEINLA 362
++ + GD +F+ VT D+GEY C A+N G A S +D E+N+
Sbjct: 164 IDPKSGDLIFDP--------VTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 211
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 277 NVTMSCYVYGDPEPTILW-LLNGQ----VLHNSSFDLLEEEEGDALFEKSVSITLFNVTD 331
++ ++C G P + W + G V +NS + D + S IT +VT
Sbjct: 18 SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQ---ITAPYADRVTFSSSGITFSSVTR 74
Query: 332 LDAGEYTCYAENIRGNASGEISLDL 356
D GEYTC G GE+S+ L
Sbjct: 75 KDNGEYTCMVSEEGGQNYGEVSIHL 99
>pdb|1HDM|B Chain B, Histocompatibility Antigen Hla-Dm
Length = 193
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 260 PPNVTIKESMVI--REAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
PP+V + ++ RE V ++CYV+G E TI W NG+++ +SS + GD
Sbjct: 90 PPSVQVAKTTPFNTREP---VMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGD 146
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENI 344
++ +++ +T YTC E+I
Sbjct: 147 WTYQ---TLSHLALTPSYGDTYTCVVEHI 172
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 90 NSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQ 148
N+G+ + +YL L+ ++L DNQI L T L N ++ L L+GNP+ + A
Sbjct: 56 NTGVTTIEG--IQYLNNLIGLELKDNQITDL---TPLKNLTKITELELSGNPLKNVSA-- 108
Query: 149 FPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
L +KT++L QI V L L+ L+ L L+ N++ ++S NL+ LS+
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGL--TNLQYLSI 164
Query: 209 DGN------PWCCDCHLRSFR 223
N P L + R
Sbjct: 165 GNNQVNDLTPLANLSKLTTLR 185
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEE---EGDALFEKSVS 323
E+M + + G + + C V G W NG V+ L E+ E A +S
Sbjct: 217 ETMEV-DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTL 275
Query: 324 ITLFNVTDLDAGEY----TCYAENIRGNASGEISLDLPEINL 361
IT+ N++++++ Y TC+A+N G + I L P N
Sbjct: 276 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPVTNF 317
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEE---EGDALFEKSVS 323
E+M + + G + + C V G W NG V+ L E+ E A +S
Sbjct: 219 ETMEV-DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTL 277
Query: 324 ITLFNVTDLDAGEY----TCYAENIRGNASGEISLDLPEINL 361
IT+ N++++++ Y TC+A+N G + I L P N
Sbjct: 278 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPVTNF 319
>pdb|4FDW|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Bacova_01565) From Bacteroides Ovatus Atcc 8483 At 2.05
A Resolution
Length = 401
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 35 GKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIG---LLN--LQRIYLK 89
G + + K N LP+++ S + N+ + E KSIG N +Q I
Sbjct: 106 GVLTEILKGYNEIILPNSVKSIPKDAFRNSQIAKVVLNEGLKSIGDXAFFNSTVQEIVFP 165
Query: 90 NSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT--ELRAG 147
S + ++ D F Y L + DLS +I L TF+ +VL P+T E+ +
Sbjct: 166 -STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL----PVTLKEIGSQ 220
Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
F K LKTIE+ + ++ ++A + + ++ L N + +++ F+ P L ++
Sbjct: 221 AFLKTSQLKTIEIPE-NVSTIGQEAF-RESGITTVKL-PNGVTNIASRAFYYCPELAEVT 277
Query: 208 LDGNPWCCD 216
G+ + D
Sbjct: 278 TYGSTFNDD 286
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALFEKSVSITLFNVTDLD 333
G C V G P+P ++W + + S F + +EEG+ S+T+ V D
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC------SLTISEVCGDD 109
Query: 334 AGEYTCYAENIRGNAS 349
+YTC A N G A+
Sbjct: 110 DAKYTCKAVNSLGEAT 125
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALFEKSVSITLFNVTDLD 333
G C V G P+P ++W + + S F + +EEG+ S+T+ V D
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNC------SLTISEVCGDD 109
Query: 334 AGEYTCYAENIRGNAS 349
+YTC A N G A+
Sbjct: 110 DAKYTCKAVNSLGEAT 125
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 284 VYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343
V G+P+P + W NG +L+ S + + + E + L N T ++ G+YT A+N
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHT-EYHGCLQLDNPTHMNNGDYTLIAKN 83
Query: 344 IRGNASGEISLDL 356
G +IS
Sbjct: 84 EYGKDEKQISAHF 96
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 35.4 bits (80), Expect = 0.085, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
+GG + C G+P+P I W+ G+ + + F+++E ++G + I V D
Sbjct: 21 SGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAG---SVLRIQPLRVQR-D 76
Query: 334 AGEYTCYAENIRG--NASGEISLDLPEINLATTLSKTD 369
Y C A N G N S ++S+ L E L + D
Sbjct: 77 EAIYECTATNSLGEINTSAKLSV-LEEDQLPSGFPTID 113
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
P + + + + E G TM C G+P+P I W + + ++ G +
Sbjct: 110 PTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAA------SNGRIKQLR 163
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRG 346
S ++ + + + D G+Y C A N G
Sbjct: 164 SGALQIESSEESDQGKYECVATNSAG 189
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
+YL L+ ++L DNQI L L ++ L L+GNP+ + A L +KT++L
Sbjct: 60 QYLNNLIGLELKDNQITDLAPLKNL--TKITELELSGNPLKNVSA--IAGLQSIKTLDLT 115
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC 217
QI V L L+ L+ L L+ N++ ++S NL+ LS+ GN D
Sbjct: 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGL--TNLQYLSI-GNAQVSDL 166
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 284 VYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343
V G+P+P + W NG +L+ S + + + E + L N T ++ G+YT A+N
Sbjct: 25 VKGNPKPALQWFYNGAILNESKYICTKIHVTNHT-EYHGCLQLDNPTHMNNGDYTLIAKN 83
Query: 344 IRGNASGEIS 353
G +IS
Sbjct: 84 EYGKDEKQIS 93
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
E +++ + G +VT+ C V G P P ++W N + L + + + +
Sbjct: 316 EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS-----------GLVI 364
Query: 327 FNVTDLDAGEYTCYAENIRGN 347
V + D G Y C A N G+
Sbjct: 365 KGVKNGDKGYYGCRATNEHGD 385
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEE---EGDALFEKSVS 323
E+M + + G + + C V G W NG V+ L E+ E A +S
Sbjct: 214 ETMEV-DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTL 272
Query: 324 ITLFNVTDLDAGEY----TCYAENIRGNASGEISLDLP 357
IT+ N++++++ Y TC+A+N G + I L P
Sbjct: 273 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 310
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEE---EGDALFEKSVS 323
E+M + + G + + C V G W NG V+ L E+ E A +S
Sbjct: 217 ETMEV-DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTL 275
Query: 324 ITLFNVTDLDAGEY----TCYAENIRGNASGEISLDLP 357
IT+ N++++++ Y TC+A+N G + I L P
Sbjct: 276 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 286 GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR 345
G+P PT +W +G+ + L E++G E + D+G YTC +N
Sbjct: 32 GEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE------IHKTDTSDSGLYTCTVKNSA 85
Query: 346 GNASGEISLDLPEI 359
G+ S L + I
Sbjct: 86 GSVSSSCKLTIKAI 99
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVT---D 331
G V ++C V+ P TI W +GQ+L +S++ ++ + S + VT +
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK-------IYNTPSASYLEVTPDSE 85
Query: 332 LDAGEYTCYAENIRGNASGEISL 354
D G Y C A N G S E L
Sbjct: 86 NDFGNYNCTAVNRIGQESLEFIL 108
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 29/198 (14%)
Query: 78 IGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYL 136
+GL LQ + ++S ++ V F L L+ +D+S FLG L L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455
Query: 137 NGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195
GN + + F L ++L CQ+ + L L+ LN++ N L L S
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
Query: 196 VFFPTPNLKTL------------------------SLDGNPWCCDCHLRSFRNWLLKSKL 231
+ +L TL +L N C C + F W+ + K
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQ 575
Query: 232 Y---SHPLSCTEPGMLQT 246
+ ++C P + T
Sbjct: 576 FLVNVEQMTCATPVEMNT 593
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195
L+ NP+ L++ F L+ ++L C+I ++ A L L +L L GN ++ S
Sbjct: 39 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98
Query: 196 VFFPTPNLKTL 206
F +L+ L
Sbjct: 99 SFSGLTSLENL 109
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%)
Query: 100 TFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE 159
+F + L +DLS +I + + G L L L GNPI G F L L+ +
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 160 LQHCQIHSVHKDALIHLTALESLNLNGN 187
++ S+ + L L+ LN+ N
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHN 138
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 29/198 (14%)
Query: 78 IGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYL 136
+GL LQ + ++S ++ V F L L+ +D+S FLG L L +
Sbjct: 391 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 450
Query: 137 NGNPITE-LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195
GN + + F L ++L CQ+ + L L+ LN++ N L L S
Sbjct: 451 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 510
Query: 196 VFFPTPNLKTL------------------------SLDGNPWCCDCHLRSFRNWLLKSKL 231
+ +L TL +L N C C + F W+ + K
Sbjct: 511 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQ 570
Query: 232 Y---SHPLSCTEPGMLQT 246
+ ++C P + T
Sbjct: 571 FLVNVEQMTCATPVEMNT 588
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195
L+ NP+ L++ F L+ ++L C+I ++ A L L +L L GN ++ S
Sbjct: 34 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 93
Query: 196 VFFPTPNLKTL 206
F +L+ L
Sbjct: 94 SFSGLTSLENL 104
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%)
Query: 100 TFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE 159
+F + L +DLS +I + + G L L L GNPI G F L L+ +
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 160 LQHCQIHSVHKDALIHLTALESLNLNGN 187
++ S+ + L L+ LN+ N
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAHN 133
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 276 GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG 335
G +SC G P PTILW +G VL ++ +++ E L + + D G
Sbjct: 24 GTFVLSCVATGSPVPTILWRKDG-VLVSTQDSRIKQLENGVLQIRYAKLG-------DTG 75
Query: 336 EYTCYAENIRGNASGEISLDLPEINL 361
YTC A G A+ +++ E +
Sbjct: 76 RYTCIASTPSGEATWSAYIEVQEFGV 101
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 278 VTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337
VT +C V G+P+P I W +G+ + S + + D + S+ T D G Y
Sbjct: 26 VTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG----TCSLHTTASTLDDDGNY 81
Query: 338 TCYAENIRGNASGEISLDLPEIN 360
T A N +G S L + +N
Sbjct: 82 TIMAANPQGRISCTGRLMVQAVN 104
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSS--FDLLEEEEGDALFEKSVSITLFNVTDL 332
G VT +C V G+P+P I W +G+ + S + + + +G + S T
Sbjct: 22 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAS------TLD 75
Query: 333 DAGEYTCYAENIRGNAS 349
D G YT A N +G S
Sbjct: 76 DDGNYTIMAANPQGRVS 92
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++ LD+++NK+S ++ A L NL+ + N+ I ++ LT L E+ L+ NQ
Sbjct: 178 LERLDISSNKVSDISVLA----KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 231
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + L N L L L N I+ L L L ++L QI ++ L L
Sbjct: 232 LKDIGTLASLTN--LTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGL 285
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
TAL +L LN N+L+ +S P NLK L+
Sbjct: 286 TALTNLELNENQLEDIS-----PISNLKNLT 311
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 31/151 (20%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA--- 118
+NNN+I+ +T A L NL + L N+ I ++ D K LT L ++LS N I+
Sbjct: 96 MNNNQIADITPLA----NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS 149
Query: 119 ------WLHQDTFLGND-----------RLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
L Q +F GN L+ L ++ N ++++ KL L+++
Sbjct: 150 ALSGLTSLQQLSF-GNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 206
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
+ QI + + LT L+ L+LNGN+LK +
Sbjct: 207 NNQISDITPLGI--LTNLDELSLNGNQLKDI 235
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 272 REAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF-------EKSVSI 324
R GG+V + C G P P I W GQ ++ L + D + + +I
Sbjct: 33 RWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTI 92
Query: 325 TLFNVTDLDAGEYTCYAEN 343
++ + + D G Y C A N
Sbjct: 93 SIDTLVEEDTGTYECRASN 111
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 272 REAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF-------EKSVSI 324
R GG+V + C G P P I W GQ ++ L + D + + +I
Sbjct: 33 RWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTI 92
Query: 325 TLFNVTDLDAGEYTCYAEN 343
++ + + D G Y C A N
Sbjct: 93 SIDTLVEEDTGTYECRASN 111
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++ LD+++NK+S ++ A L NL+ + N+ I ++ LT L E+ L+ NQ
Sbjct: 179 LERLDISSNKVSDISVLA----KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + L N L L L N I+ L L L ++L QI ++ L L
Sbjct: 233 LKDIGTLASLTN--LTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGL 286
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
TAL +L LN N+L+ +S P NLK L+
Sbjct: 287 TALTNLELNENQLEDIS-----PISNLKNLT 312
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 31/151 (20%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA--- 118
+NNN+I+ +T A L NL + L N+ I ++ D K LT L ++LS N I+
Sbjct: 97 MNNNQIADITPLA----NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS 150
Query: 119 ------WLHQDTFLGND-----------RLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
L Q +F GN L+ L ++ N ++++ KL L+++
Sbjct: 151 ALSGLTSLQQLSF-GNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 207
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
+ QI + + LT L+ L+LNGN+LK +
Sbjct: 208 NNQISDITPLGI--LTNLDELSLNGNQLKDI 236
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++ LD+++NK+S ++ A L NL+ + N+ I ++ LT L E+ L+ NQ
Sbjct: 175 LERLDISSNKVSDISVLA----KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 228
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + L N L L L N I+ L L L ++L QI ++ L L
Sbjct: 229 LKDIGTLASLTN--LTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGL 282
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
TAL +L LN N+L+ +S P NLK L+
Sbjct: 283 TALTNLELNENQLEDIS-----PISNLKNLT 308
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 30/151 (19%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA--- 118
+NNN+I+ +T A L NL + L N+ I ++ D K LT L ++LS N I+
Sbjct: 92 MNNNQIADITPLA----NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS 145
Query: 119 ------WLHQDTFLGND-----------RLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
L Q +F N L+ L ++ N ++++ KL L+++
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 203
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
+ QI + + LT L+ L+LNGN+LK +
Sbjct: 204 NNQISDITPLGI--LTNLDELSLNGNQLKDI 232
>pdb|1DDH|A Chain A, Mhc Class I H-2dd Heavy Chain Complexed With Beta-2
Microglobulin And An Immunodominant Peptide P18-I10 From
The Human Immunodeficiency Virus Envelope Glycoprotein
120
Length = 274
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 272 REAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITLFN 328
R G+VT+ C+ G E T+ W LNG+ L +L+E GD F+K S+
Sbjct: 193 RRPEGDVTLRCWALGFYPAEITLTWQLNGEEL-TQEMELVETRPAGDGTFQKWASVV--- 248
Query: 329 VTDLDAGEYTCYAEN 343
V +YTC+ E+
Sbjct: 249 VPLGKQQKYTCHVEH 263
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++ LD+++NK+S ++ A L NL+ + N+ I ++ LT L E+ L+ NQ
Sbjct: 174 LERLDISSNKVSDISVLA----KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 227
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + L N L L L N I+ L L L ++L QI ++ L L
Sbjct: 228 LKDIGTLASLTN--LTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGL 281
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
TAL +L LN N+L+ +S P NLK L+
Sbjct: 282 TALTNLELNENQLEDIS-----PISNLKNLT 307
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 31/151 (20%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA--- 118
+NNN+I+ +T A L NL + L N+ I ++ D K LT L ++LS N I+
Sbjct: 92 MNNNQIADITPLA----NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS 145
Query: 119 ------WLHQDTFLGND-----------RLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
L Q F GN L+ L ++ N ++++ KL L+++
Sbjct: 146 ALSGLTSLQQLNF-GNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 202
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
+ QI + + LT L+ L+LNGN+LK +
Sbjct: 203 NNQISDITPLGI--LTNLDELSLNGNQLKDI 231
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 30/151 (19%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA--- 118
+NNN+I+ +T A L NL + L N+ I ++ D K LT L ++LS N I+
Sbjct: 92 MNNNQIADITPLA----NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS 145
Query: 119 ------WLHQDTFLGND-----------RLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
L Q +F N L+ L ++ N ++++ KL L+++
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 203
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
+ QI + + LT L+ L+LNGN+LK +
Sbjct: 204 NNQISDITPLGI--LTNLDELSLNGNQLKDI 232
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++ LD+++NK+S ++ A L NL+ + N+ I ++ LT L E+ L+ NQ
Sbjct: 175 LERLDISSNKVSDISVLA----KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 228
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + L N L L L N I+ L L L ++L QI ++ L L
Sbjct: 229 LKDIGTLASLTN--LTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGL 282
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
TAL +L LN N+L+ +S P NLK L+
Sbjct: 283 TALTNLELNENQLEDIS-----PISNLKNLT 308
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++ LD+++NK+S ++ A L NL+ + N+ I ++ LT L E+ L+ NQ
Sbjct: 174 LERLDISSNKVSDISVLA----KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 227
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + L N L L L N I+ L L L ++L QI ++ L L
Sbjct: 228 LKDIGTLASLTN--LTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGL 281
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
TAL +L LN N+L+ +S P NLK L+
Sbjct: 282 TALTNLELNENQLEDIS-----PISNLKNLT 307
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 31/151 (20%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIA--- 118
+NNN+I+ +T A L NL + L N+ I ++ D K LT L ++LS N I+
Sbjct: 92 MNNNQIADITPLA----NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS 145
Query: 119 ------WLHQDTFLGND-----------RLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
L Q F GN L+ L ++ N ++++ KL L+++
Sbjct: 146 ALSGLTSLQQLNF-GNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIAT 202
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
+ QI + + LT L+ L+LNGN+LK +
Sbjct: 203 NNQISDITPLGI--LTNLDELSLNGNQLKDI 231
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++ LD+++NK+S ++ A L NL+ + N+ I ++ LT L E+ L+ NQ
Sbjct: 175 LERLDISSNKVSDISVLA----KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 228
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + L N L L L N I+ L L L ++L QI ++ L L
Sbjct: 229 LKDIGTLASLTN--LTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--PLAGL 282
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
TAL +L LN N+L+ +S P NLK L+
Sbjct: 283 TALTNLELNENQLEDIS-----PISNLKNLT 308
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 30/151 (19%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLH 121
+NNN+I+ +T A L NL + L N+ I ++ D K LT L ++LS N I+ +
Sbjct: 92 MNNNQIADITPLA----NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS 145
Query: 122 QDTFLGNDRLKVLYLNGNPITELR--------------------AGQFPKLPYLKTIELQ 161
G L+ L + N +T+L+ KL L+++
Sbjct: 146 --ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHL 192
+ QI + + LT L+ L+LNGN+LK +
Sbjct: 204 NNQISDITPLGI--LTNLDELSLNGNQLKDI 232
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 17/191 (8%)
Query: 28 CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIY 87
C C + LC+++ T +PS L + L K+ + K AF G +L++I
Sbjct: 7 CHC----SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIE 60
Query: 88 LKNSGIREV-HRDTFKYLTILVEVDLSD-NQIAWLHQDTFLGNDRLKVLYLNGNPITELR 145
+ + + EV D F L L E+ + N + +++ + F L+ L ++ I L
Sbjct: 61 ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL- 119
Query: 146 AGQFPKLPYLKTIEL---QHCQIHSVHKDALIHLTALES--LNLNGNRLKHLSESVFFPT 200
K+ L+ + L + IH++ +++ + L+ ES L LN N ++ + F T
Sbjct: 120 -PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKNGIQEIHNCAFNGT 177
Query: 201 PNLKTLSLDGN 211
L L+L N
Sbjct: 178 -QLDELNLSDN 187
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS---SFDLLEEEEGDA 316
PP + V +G + C V G+P P ++W GQ L S SF E G
Sbjct: 14 PPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG-- 71
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAEN 343
+ L DAG Y C A N
Sbjct: 72 -------LLLTAALPTDAGVYVCRARN 91
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNS---SFDLLEEEEGDALFEKSVSITLFNVT 330
+G + C V G+P P ++W GQ L S SF E G + L
Sbjct: 28 SGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG---------LLLTAAL 78
Query: 331 DLDAGEYTCYAEN 343
DAG Y C A N
Sbjct: 79 PTDAGVYVCRARN 91
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 34/190 (17%)
Query: 45 NFTALPSTLDSDIQV--LDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT-- 100
NF L T I V ++L+NN+IS KE F + L+ I L + + E+ +++
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS--SINLXGNXLTEIPKNSLK 478
Query: 101 -----FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL-YLNGNPITELRAGQFPKLPY 154
FK +L +DL N++ L D R L YL G ++ +FP P
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDF-----RATTLPYLVGIDLSYNSFSKFPTQP- 532
Query: 155 LKTIELQHCQIHSVHKDALIHLT------------ALESLNLNGNRLKHLSESVFFPTPN 202
L + L+ I + +DA + T +L L + N ++ ++E + TPN
Sbjct: 533 LNSSTLKGFGIRN-QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPN 588
Query: 203 LKTLSLDGNP 212
+ L + NP
Sbjct: 589 ISVLDIKDNP 598
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNS---SFDLLEEEEGDALFEKSVSITLFNVT 330
+G + C V G+P P ++W GQ L S SF E G + L
Sbjct: 27 SGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG---------LLLTAAL 77
Query: 331 DLDAGEYTCYAEN 343
DAG Y C A N
Sbjct: 78 PTDAGVYVCRARN 90
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSV 168
+DLS+ QI + + F D L LYLNGN +TEL A + L L+ ++L H ++ S+
Sbjct: 229 LDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSL 285
>pdb|1BII|A Chain A, The Crystal Structure Of H-2dd Mhc Class I In Complex With
The Hiv-1 Derived Peptide P18-110
Length = 365
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 272 REAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITLFN 328
R G+VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+
Sbjct: 217 RRPEGDVTLRCWALGFYPADITLTWQLNGEEL-TQEMELVETRPAGDGTFQKWASVV--- 272
Query: 329 VTDLDAGEYTCYAEN 343
V +YTC+ E+
Sbjct: 273 VPLGKEQKYTCHVEH 287
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 278 VTMSCYVYGDPEPTILWLLNGQ-----VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
V +SC G P + W + V +N+ E+ L IT +VT
Sbjct: 22 VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL---PTGITFKSVTRE 78
Query: 333 DAGEYTCYAENIRGNASGEISLDL 356
D G YTC GN+ GE+ + L
Sbjct: 79 DTGTYTCMVSEEGGNSYGEVKVKL 102
>pdb|1QO3|A Chain A, Complex Between Nk Cell Receptor Ly49a And Its Mhc Class I
Ligand H-2dd
pdb|3ECB|A Chain A, Crystal Structure Of Mouse H-2dd In Complex With Peptide
P18-I10 Derived From Human Immunodeficiency Virus
Envelope Glycoprotein 120
Length = 277
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 272 REAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITLFN 328
R G+VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+
Sbjct: 193 RRPEGDVTLRCWALGFYPADITLTWQLNGEEL-TQEMELVETRPAGDGTFQKWASVV--- 248
Query: 329 VTDLDAGEYTCYAEN 343
V +YTC+ E+
Sbjct: 249 VPLGKEQKYTCHVEH 263
>pdb|3E6F|A Chain A, Mhc Class I H-2dd Heavy Chain Complexed With Beta-2
Microglobulin And A Variant Peptide, Pa9, From The Human
Immunodeficiency Virus (Bal) Envelope Glycoprotein 120
Length = 274
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 272 REAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITLFN 328
R G+VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+
Sbjct: 193 RRPEGDVTLRCWALGFYPADITLTWQLNGEEL-TQEMELVETRPAGDGTFQKWASVV--- 248
Query: 329 VTDLDAGEYTCYAEN 343
V +YTC+ E+
Sbjct: 249 VPLGKEQKYTCHVEH 263
>pdb|3DMM|A Chain A, Crystal Structure Of The Cd8 Alpha BetaH-2dd Complex
Length = 275
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 272 REAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITLFN 328
R G+VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+
Sbjct: 193 RRPEGDVTLRCWALGFYPADITLTWQLNGEEL-TQEMELVETRPAGDGTFQKWASVV--- 248
Query: 329 VTDLDAGEYTCYAEN 343
V +YTC+ E+
Sbjct: 249 VPLGKEQKYTCHVEH 263
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE----E 312
F P V++ ++ + G T++C + D ++ + NS L E+
Sbjct: 183 FKAVPVVSVSKASYLLREGEEFTVTCTI-KDVSSSVYSTWKRE---NSQTKLQEKYNSWH 238
Query: 313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWY 372
GD +E+ ++T+ + D+G + CYA N G+A N+ TTL D +
Sbjct: 239 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA-----------NVTTTLEVVDKGF 287
Query: 373 MLVL 376
+ +
Sbjct: 288 INIF 291
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE----E 312
F P V++ ++ + G T++C + D ++ + NS L E+
Sbjct: 208 FKAVPVVSVSKASYLLREGEEFTVTCTI-KDVSSSVYSTWKRE---NSQTKLQEKYNSWH 263
Query: 313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWY 372
GD +E+ ++T+ + D+G + CYA N G+A N+ TTL D +
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA-----------NVTTTLEVVDKGF 312
Query: 373 MLVL 376
+ +
Sbjct: 313 INIF 316
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 278 VTMSCYVYGDPEPTILWLLNGQ-----VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
V +SC G P + W + V +N+ E+ L IT +VT
Sbjct: 21 VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL---PTGITFKSVTRE 77
Query: 333 DAGEYTCYAENIRGNASGEISLDL 356
D G YTC GN+ GE+ + L
Sbjct: 78 DTGTYTCMVSEEGGNSYGEVKVKL 101
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G V ++C V G EP I W+ +G V+ N + E + ++L +V DA
Sbjct: 17 GQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG----FLSLKSVERSDA 72
Query: 335 GEYTCYAENIRGNASGEISLDLP 357
G Y C E+ GE + P
Sbjct: 73 GRYWCQVED-----GGETEISQP 90
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
L+ +YL N+ I ++ LT L + L DNQI+ + G +L+ LYL+ N I+
Sbjct: 154 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS 209
Query: 143 ELRAGQFPKLPYLKTIEL--QHC 163
+LRA L L +EL Q C
Sbjct: 210 DLRA--LAGLKNLDVLELFSQEC 230
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
L+ +YL N+ I ++ LT L + L DNQI+ + G +L+ LYL+ N I+
Sbjct: 154 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS 209
Query: 143 ELRAGQFPKLPYLKTIEL--QHC 163
+LRA L L +EL Q C
Sbjct: 210 DLRA--LAGLKNLDVLELFSQEC 230
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
L+ +YL N+ I ++ LT L + L DNQI+ + G +L+ LYL+ N I+
Sbjct: 154 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS 209
Query: 143 ELRAGQFPKLPYLKTIEL--QHC 163
+LRA L L +EL Q C
Sbjct: 210 DLRA--LAGLKNLDVLELFSQEC 230
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 252 VKAQEFACPPNVTIKESM---VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL 308
V +E A PP + + + IR+ G + + G P P ++W G L S +
Sbjct: 13 VTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHV 72
Query: 309 LEEEEGDALFEKSVSITLFNVTDLDAGEY--TCYAENIRGNASGEISL 354
+ F + + + D+GEY + EN++ A+ I +
Sbjct: 73 RTSDFDTVFFVRQAARS-------DSGEYELSVQIENMKDTATIRIRV 113
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
L+ +YL N+ I ++ LT L + L DNQI+ + G +L+ LYL+ N I+
Sbjct: 131 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS 186
Query: 143 ELRAGQFPKLPYLKTIEL--QHC 163
+LRA L L +EL Q C
Sbjct: 187 DLRA--LAGLKNLDVLELFSQEC 207
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
L+ +YL N+ I ++ LT L + L DNQI+ + G +L+ LYL+ N I+
Sbjct: 134 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS 189
Query: 143 ELRAGQFPKLPYLKTIEL--QHC 163
+LRA L L +EL Q C
Sbjct: 190 DLRA--LAGLKNLDVLELFSQEC 210
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
L+ +YL N+ I ++ LT L + L DNQI+ + G +L+ LYL+ N I+
Sbjct: 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS 191
Query: 143 ELRAGQFPKLPYLKTIEL--QHC 163
+LRA L L +EL Q C
Sbjct: 192 DLRA--LAGLKNLDVLELFSQEC 212
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 175 HLTALESLNLNGNRLKHLSE--SVFFPTPNLKTLSLDGNPWCCDCHL 219
++ L SLNL+ NRL L + S+ PNLK L+L GN + L
Sbjct: 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 214
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 78 IGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN 137
+ L L+ +YL N+ I ++ LT L + L DNQI+ + G +L+ LYL+
Sbjct: 131 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186
Query: 138 GNPITELRAGQFPKLPYLKTIEL--QHC 163
N I++LRA L L +EL Q C
Sbjct: 187 KNHISDLRA--LAGLKNLDVLELFSQEC 212
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 82 NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
N Q IY + G R++ + T L L D Q A + + N +L LYLN +
Sbjct: 274 NTQLIYFQAEGCRKIKELDVTHNTQLY---LLDCQAAGITELDLSQNPKLVYLYLNNTEL 330
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHK 170
TEL KL L + SV K
Sbjct: 331 TELDVSHNTKLKSLSCVNAHIQDFSSVGK 359
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
+D SDN+I L D F RLK L +N N I + G LP L + L + + +
Sbjct: 47 IDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104
Query: 170 K-DALIHLTALESLNLNGNRL---KHLSESVFFPTPNLKTLSL 208
D L L +L L + N + KH V + P ++ L
Sbjct: 105 DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVL--HNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
G +V + C + P P + W N +++ + L ++ G V++ + +V
Sbjct: 30 GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG------RVTLLIKDVNKK 83
Query: 333 DAGEYTCYAENIRGNASGEISLDL 356
DAG YT A N G + LD+
Sbjct: 84 DAGWYTVSAVNEAGVTTCNTRLDV 107
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 175 HLTALESLNLNGNRLKHLSE--SVFFPTPNLKTLSLDGNPWCCDCHL 219
++ L SLNL+ NRL L + S+ PNLK L+L GN + L
Sbjct: 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 214
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 175 HLTALESLNLNGNRLKHLSE--SVFFPTPNLKTLSLDGN 211
++ L SLNL+ NRL L + S+ PNLK L+L GN
Sbjct: 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 175 HLTALESLNLNGNRLKHLSE--SVFFPTPNLKTLSLDGN 211
++ L SLNL+ NRL L + S+ PNLK L+L GN
Sbjct: 162 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 200
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 175 HLTALESLNLNGNRLKHLSE--SVFFPTPNLKTLSLDGN 211
++ L SLNL+ NRL L + S+ PNLK L+L GN
Sbjct: 162 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 200
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 78 IGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN 137
+ L L+ +YL N+ I ++ LT L + L DNQI+ + G +L+ LYL+
Sbjct: 128 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLS 183
Query: 138 GNPITELRAGQFPKLPYLKTIEL--QHC 163
N I++LRA L L +EL Q C
Sbjct: 184 KNHISDLRA--LAGLKNLDVLELFSQEC 209
>pdb|1NEZ|A Chain A, The Crystal Structure Of A TlCD8AA COMPLEX AT 2.1A
Resolution:implications For Memory T Cell Generation,
Co-Receptor Preference And Affinity
Length = 274
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 253 KAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLE 310
K QE PP + G+VT+ C+ G T+ W LNG+ L + +
Sbjct: 177 KTQECTDPPKTHVTHHA---RPEGDVTLRCWALGFYPAHITLTWQLNGEELIQDTELVET 233
Query: 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCY 340
GD F+K ++ V + +YTC+
Sbjct: 234 RPAGDGTFQKWAAVV---VPSGEEQKYTCH 260
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 16/82 (19%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G +C G+P T+ W+ +G+ + +S L E +V D
Sbjct: 322 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIE----------------SVKKEDK 365
Query: 335 GEYTCYAENIRGNASGEISLDL 356
G Y C+ N R +A L L
Sbjct: 366 GMYQCFVRNDRESAEASAELKL 387
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
++ T L E+ LS NQI+ L L +L+ L +N N + L P L + L
Sbjct: 59 MQFFTNLKELHLSHNQISDLSPLKDL--TKLEELSVNRNRLKNLNG--IPS-ACLSRLFL 113
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLR 220
+ ++ D+LIHL LE L++ N+LK + F L+ L L GN L
Sbjct: 114 DNNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFLSK--LEVLDLHGNEITNTGGLT 169
Query: 221 SFR--NWL 226
+ NW+
Sbjct: 170 RLKKVNWI 177
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 276 GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSI------TLFNV 329
G VT+ C G+P P I W + D EGD + + + + ++
Sbjct: 16 GQVTLVCDAEGEPIPEITW--------KRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 330 TDL---DAGEYTCYAENIRGNASGEISLDL 356
D+ D+G Y C A + G + LD+
Sbjct: 68 KDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 16/82 (19%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G +C G+P T+ W+ +G+ + +S L E +V D
Sbjct: 328 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIE----------------SVKKEDK 371
Query: 335 GEYTCYAENIRGNASGEISLDL 356
G Y C+ N R +A L L
Sbjct: 372 GMYQCFVRNDRESAEASAELKL 393
>pdb|2PIG|A Chain A, Crystal Structure Of Ydck From Salmonella Cholerae At 2.38
A Resolution. Northeast Structural Genomics Target Scr6
pdb|2PIG|B Chain B, Crystal Structure Of Ydck From Salmonella Cholerae At 2.38
A Resolution. Northeast Structural Genomics Target Scr6
Length = 334
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 39/174 (22%)
Query: 161 QHCQIHSVHKDALI-HLTALESLNLNGNR------LKHLSESVFFPTPNLKTLSLDGNPW 213
+H QI ++ A + H + + L GN ++H +E F L D N W
Sbjct: 147 EHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFA---LIEGDKDNNVW 203
Query: 214 CCDCHLRSFRNWLLKSKLYSHP--LSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVI 271
CDC +K+Y H ++ TE + T + A+ N +K +++
Sbjct: 204 ICDC-----------AKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLV 252
Query: 272 REAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSIT 325
GG+ V G P LL+ +VL + +G+ L E+ V I+
Sbjct: 253 ---GGHAE----VRGGP-----ILLDDRVLIEGHACI----QGEILIERQVEIS 290
>pdb|2F9C|A Chain A, Crystal Structure Of Ydck From Salmonella Cholerae. Nesg
Target Scr6
pdb|2F9C|B Chain B, Crystal Structure Of Ydck From Salmonella Cholerae. Nesg
Target Scr6
Length = 334
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 39/174 (22%)
Query: 161 QHCQIHSVHKDALI-HLTALESLNLNGNR------LKHLSESVFFPTPNLKTLSLDGNPW 213
+H QI ++ A + H + + L GN ++H +E F L D N W
Sbjct: 147 EHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFA---LIEGDKDNNVW 203
Query: 214 CCDCHLRSFRNWLLKSKLYSHP--LSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVI 271
CDC +K+Y H ++ TE + T + A+ N +K +++
Sbjct: 204 ICDC-----------AKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLV 252
Query: 272 REAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSIT 325
GG+ V G P LL+ +VL + +G+ L E+ V I+
Sbjct: 253 ---GGHAE----VRGGP-----ILLDDRVLIEGHACI----QGEILIERQVEIS 290
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 276 GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSI------TLFNV 329
G VT+ C G+P P I W + D EGD + + + + ++
Sbjct: 16 GQVTLVCDAEGEPIPEITW--------KRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 67
Query: 330 TDL---DAGEYTCYAENIRGNASGEISLDL 356
D+ D+G Y C A + G + LD+
Sbjct: 68 KDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 23/97 (23%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP T+ + G +C G+P T+ W+ +G+ + +S L E
Sbjct: 317 PPTQTV-------DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIE-------- 361
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+V D G Y C+ N R +A L L
Sbjct: 362 --------SVKKEDKGMYQCFVRNDRESAEASAELKL 390
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK 320
P + + V + G +SC + G P P I W G+ L S + + +
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD------GR 61
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRGNA 348
+ ++T+ D G YTC A N G
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATNEVGEV 89
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 242 GMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL 301
G++ K+ V+ E + ES+V G V + G P P I W NG L
Sbjct: 182 GLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPL 241
Query: 302 HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN--IRGNASGEISLDL--- 356
E + + +T+ V++ D G YT N + S +SL +
Sbjct: 242 -----------ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVP 290
Query: 357 PEINLATTLSKTDSW 371
P+I + +S DS+
Sbjct: 291 PQIGEKSLISPVDSY 305
>pdb|2CII|A Chain A, The Crystal Structure Of H-2db Complexed With A Partial
Peptide Epitope Suggests An Mhc Class I Assembly-
Intermediate
Length = 275
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWALNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1ED3|A Chain A, Crystal Structure Of Rat Minor Histocompatibility Antigen
Complex Rt1-AaMTF-E.
pdb|1ED3|D Chain D, Crystal Structure Of Rat Minor Histocompatibility Antigen
Complex Rt1-AaMTF-E
Length = 275
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G+VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GDVTLRCWALGFYPADITLTWQLNGEDL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|3DNK|A Chain A, Enzyme Deglycosylated Human Igg1 Fc Fragment
pdb|3DNK|B Chain B, Enzyme Deglycosylated Human Igg1 Fc Fragment
Length = 212
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 287 DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343
DPE W ++G +HN+ EE+ D+ + +T+ + L+ EY C N
Sbjct: 35 DPEVKFNWYVDGVEVHNAKTK-PREEQYDSTYRVVSVLTVLHQDWLNGKEYKCKVSN 90
>pdb|1S7U|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|3QUK|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUK|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUL|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3TBS|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBS|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBT|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBV|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBW|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBX|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand V3p
pdb|3TBY|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
Length = 338
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1KJM|A Chain A, Tap-A-Associated Rat Mhc Class I Molecule
Length = 285
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G+VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GDVTLRCWALGFYPADITLTWQLNGEDL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 274 AGGNVTMSCYV---------YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSI 324
AGG V + C V + +P L+ + L ++ L+ + +SI
Sbjct: 52 AGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHE------LSI 105
Query: 325 TLFNVTDLDAGEYTC 339
++ NV D GEYTC
Sbjct: 106 SISNVALADEGEYTC 120
>pdb|1CE6|A Chain A, Mhc Class I H-2db Complexed With A Sendai Virus
Nucleoprotein Peptide
Length = 274
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1FFN|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33(C9m)
pdb|1FFN|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33(C9m)
pdb|1FFO|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Synthetic Peptide Gp33 (C9mK1A)
pdb|1FFO|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Synthetic Peptide Gp33 (C9mK1A)
pdb|1FFP|A Chain A, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33 (C9mK1S)
pdb|1FFP|D Chain D, Crystal Structure Of Murine Class I H-2db Complexed With
Peptide Gp33 (C9mK1S)
pdb|1YN6|A Chain A, Crystal Structure Of A Mouse Mhc Class I Protein, H2-Db,
In Complex With A Peptide From The Influenza A Acid
Polymerase
pdb|1YN7|A Chain A, Crystal Structure Of A Mouse Mhc Class I Protein, H2-Db,
In Complex With A Mutated Peptide (R7a) Of The Influenza
A Acid Polymerase
Length = 273
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 196 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 248
>pdb|1N3N|A Chain A, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|C Chain C, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|E Chain E, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|G Chain G, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
Length = 280
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1FG2|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|D Chain D, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|G Chain G, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|J Chain J, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPF|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp276 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPG|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Np396 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|3FTG|A Chain A, Crystal Structure Of H2db In Complex With Np366-N3a
Variant Peptide From Influenza
pdb|4HUU|A Chain A, Crystal Structure Of H2db-npm6i
pdb|4HUU|D Chain D, Crystal Structure Of H2db-npm6i
pdb|4HUV|A Chain A, Crystal Structure Of H2db-npm6w
pdb|4HUV|D Chain D, Crystal Structure Of H2db-npm6w
pdb|4HUW|A Chain A, Crystal Structure Of H2db-npm6t
pdb|4HUW|C Chain C, Crystal Structure Of H2db-npm6t
pdb|4HUW|E Chain E, Crystal Structure Of H2db-npm6t
pdb|4HUW|G Chain G, Crystal Structure Of H2db-npm6t
Length = 281
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 198 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 250
>pdb|4HUX|A Chain A, Crystal Structure Of H2db-h155a-np
Length = 280
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1JUF|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13b, Complexed To H2-Db
Length = 276
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|2VE6|A Chain A, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|D Chain D, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|G Chain G, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|J Chain J, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
Length = 277
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1BZ9|A Chain A, Crystal Structure Of Murine Class I Mhc H2-Db Complexed
With A Synthetic Peptide P1027
Length = 277
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 196 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 248
>pdb|4HV8|A Chain A, Crystal Structure Of H2db-h155a-npm6i
pdb|4HV8|C Chain C, Crystal Structure Of H2db-h155a-npm6i
Length = 281
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 198 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 250
>pdb|1HOC|A Chain A, The Three-Dimensional Structure Of H-2db At 2.4 Angstroms
Resolution: Implications For Antigen-Determinant
Selection
Length = 272
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1KJV|A Chain A, Tap-B-Associated Rat Mhc Class I Molecule
Length = 284
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G+VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GDVTLRCWALGFYPADITLTWQLNGEDL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1QLF|A Chain A, Mhc Class I H-2db Complexed With Glycopeptide K3g
pdb|1N5A|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1WBX|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1WBY|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1ZHB|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|2F74|A Chain A, Murine Mhc Class I H-2db In Complex With Human
B2-Microglobulin And Lcmv-Derived Immunodminant Peptide
Gp33
pdb|2F74|D Chain D, Murine Mhc Class I H-2db In Complex With Human
B2-Microglobulin And Lcmv-Derived Immunodminant Peptide
Gp33
pdb|3CC5|A Chain A, H-2db Complex With Human Gp100
pdb|3CC5|D Chain D, H-2db Complex With Human Gp100
pdb|3CCH|A Chain A, H-2db Complex With Murine Gp100
pdb|3CCH|D Chain D, H-2db Complex With Murine Gp100
pdb|3CCH|G Chain G, H-2db Complex With Murine Gp100
pdb|3CCH|J Chain J, H-2db Complex With Murine Gp100
pdb|3CH1|A Chain A, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|D Chain D, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|G Chain G, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|J Chain J, Crystal Structure Of H-2db In Complex With Chimeric Gp100
Length = 276
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|2ZOK|A Chain A, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|C Chain C, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|E Chain E, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOK|G Chain G, Crystal Structure Of H-2db In Complex With Jhmv Epitope
S510
pdb|2ZOL|A Chain A, Crystal Structure Of H-2db In Complex With The W513s
Variant Of Jhmv Epitope S510
pdb|2ZOL|C Chain C, Crystal Structure Of H-2db In Complex With The W513s
Variant Of Jhmv Epitope S510
Length = 278
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1INQ|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13a, Complexed To H2-Db
pdb|3CPL|A Chain A, Crystal Structure Of H-2db In Complex With A Variant M6a
Of The Np366 Peptide From Influenza A Virus
pdb|3CPL|C Chain C, Crystal Structure Of H-2db In Complex With A Variant M6a
Of The Np366 Peptide From Influenza A Virus
Length = 275
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1LDP|H Chain H, Crystal Structure Of Murine Mhc Class I H-2ld With A
Mixture Of Bound Peptides
Length = 272
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|3BUY|A Chain A, Mhc-I In Complex With Peptide
pdb|3L3H|A Chain A, X-ray Crystal Structure Of The F6a Mutant Of Influenza A
Acid Polymerase Epitope Pa224 Bound To Murine H2-db Mhc
pdb|3PQY|A Chain A, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|F Chain F, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|K Chain K, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|P Chain P, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
Length = 275
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 196 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 248
>pdb|1LD9|A Chain A, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
pdb|1LD9|D Chain D, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
Length = 268
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GEVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNG 298
GG VT++C V P P I W+ +G
Sbjct: 18 GGTVTLTCEVPAQPSPQIHWMKDG 41
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNG 298
GG VT++C V P P I W+ +G
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDG 48
>pdb|1K8D|A Chain A, Crystal Structure Of The Non-Classical Mhc Class Ib Qa-2
Complexed With A Self Peptide
Length = 274
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G VT+ C+ G + T+ W LNG+ L +L+E GD F+K S+ +
Sbjct: 197 GAVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWASVVV 249
>pdb|1C16|A Chain A, Crystal Structure Analysis Of The GammaDELTA T CELL LIGAND
T22
pdb|1C16|C Chain C, Crystal Structure Analysis Of The GammaDELTA T CELL LIGAND
T22
pdb|1C16|E Chain E, Crystal Structure Analysis Of The GammaDELTA T CELL LIGAND
T22
pdb|1C16|G Chain G, Crystal Structure Analysis Of The GammaDELTA T CELL LIGAND
T22
pdb|1YPZ|A Chain A, Immune Receptor
pdb|1YPZ|C Chain C, Immune Receptor
Length = 260
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EGDALFEKSVSITL 326
G+VT+ C+ G + T+ W LNG+ L +L+E GD F+K ++ +
Sbjct: 181 GDVTLRCWALGFYPADITLTWQLNGEEL-TQDMELVETRPAGDGTFQKWAAVVV 233
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 25 PDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKIS 68
P RC W+ S A +P L + ++VLDL++N+++
Sbjct: 242 PSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLN 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,087,961
Number of Sequences: 62578
Number of extensions: 694397
Number of successful extensions: 2400
Number of sequences better than 100.0: 260
Number of HSP's better than 100.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 1544
Number of HSP's gapped (non-prelim): 570
length of query: 610
length of database: 14,973,337
effective HSP length: 105
effective length of query: 505
effective length of database: 8,402,647
effective search space: 4243336735
effective search space used: 4243336735
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)