Query psy10487
Match_columns 610
No_of_seqs 524 out of 4263
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 19:25:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyj_A Leucine-rich repeat-con 100.0 8.6E-45 3E-49 389.2 31.0 332 19-361 30-436 (440)
2 3zyi_A Leucine-rich repeat-con 100.0 1.8E-44 6.2E-49 388.1 27.4 332 17-360 39-445 (452)
3 2xot_A Amphoterin-induced prot 100.0 8.5E-43 2.9E-47 363.7 22.5 320 19-357 7-336 (361)
4 2id5_A Lingo-1, leucine rich r 100.0 2.8E-40 9.6E-45 358.0 25.2 324 23-356 2-475 (477)
5 2ifg_A High affinity nerve gro 100.0 3.3E-37 1.1E-41 319.8 21.4 317 109-461 12-347 (347)
6 2v9t_B SLIT homolog 2 protein 100.0 6.3E-30 2.2E-34 247.0 19.2 210 22-261 3-212 (220)
7 2ifg_A High affinity nerve gro 100.0 5.7E-30 2E-34 265.3 13.2 309 24-358 1-345 (347)
8 3m19_A Variable lymphocyte rec 100.0 1.1E-28 3.6E-33 243.7 19.5 203 23-229 3-208 (251)
9 2v70_A SLIT-2, SLIT homolog 2 100.0 1.7E-28 5.9E-33 237.0 17.5 211 22-262 3-214 (220)
10 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-28 7.1E-33 246.2 18.8 236 23-259 1-284 (285)
11 2o6q_A Variable lymphocyte rec 99.9 1.5E-25 5.1E-30 223.6 22.5 223 26-256 10-261 (270)
12 2z66_A Variable lymphocyte rec 99.9 1.1E-25 3.7E-30 228.8 18.1 223 24-252 1-302 (306)
13 1p9a_G Platelet glycoprotein I 99.9 2.6E-25 8.9E-30 224.0 18.6 201 26-229 2-223 (290)
14 2wfh_A SLIT homolog 2 protein 99.9 4.4E-25 1.5E-29 208.4 17.9 183 23-260 3-185 (193)
15 1w8a_A SLIT protein; signaling 99.9 1.4E-24 4.7E-29 204.9 17.7 186 23-262 1-187 (192)
16 2z62_A TOLL-like receptor 4, v 99.9 9.9E-24 3.4E-28 211.0 19.9 212 27-242 2-267 (276)
17 2o6s_A Variable lymphocyte rec 99.9 2.8E-23 9.6E-28 198.5 20.7 174 24-227 1-175 (208)
18 3e6j_A Variable lymphocyte rec 99.9 1.7E-23 5.7E-28 203.2 19.2 187 24-241 13-211 (229)
19 2xot_A Amphoterin-induced prot 99.9 1.3E-23 4.4E-28 218.6 14.3 153 58-215 21-177 (361)
20 2xwt_C Thyrotropin receptor; s 99.9 3.4E-23 1.2E-27 202.5 14.0 184 22-214 2-193 (239)
21 2z80_A TOLL-like receptor 2, v 99.9 3.6E-23 1.2E-27 214.6 14.2 186 23-213 23-210 (353)
22 2z80_A TOLL-like receptor 2, v 99.9 1.1E-22 3.8E-27 210.9 16.5 227 13-241 19-343 (353)
23 3zyi_A Leucine-rich repeat-con 99.9 1.9E-23 6.5E-28 224.2 9.3 155 56-215 55-210 (452)
24 4g8a_A TOLL-like receptor 4; l 99.9 9.7E-23 3.3E-27 227.8 15.0 187 24-214 23-214 (635)
25 3zyj_A Leucine-rich repeat-con 99.9 2.4E-23 8.1E-28 222.6 7.1 153 57-214 45-198 (440)
26 3rfs_A Internalin B, repeat mo 99.9 6.2E-21 2.1E-25 190.2 18.9 188 36-227 43-232 (272)
27 4g8a_A TOLL-like receptor 4; l 99.9 3.3E-21 1.1E-25 215.3 15.9 212 39-252 402-621 (635)
28 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-21 5E-26 217.4 12.3 216 37-255 379-602 (606)
29 3t6q_A CD180 antigen; protein- 99.8 3.2E-21 1.1E-25 214.7 14.2 189 23-215 3-193 (606)
30 4ay9_X Follicle-stimulating ho 99.8 5.4E-21 1.8E-25 197.9 13.8 168 24-197 2-174 (350)
31 1ziw_A TOLL-like receptor 3; i 99.8 2E-21 6.8E-26 219.4 11.2 183 79-261 478-674 (680)
32 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-20 4E-25 193.9 15.8 179 23-214 26-206 (332)
33 3v47_A TOLL-like receptor 5B a 99.8 7.9E-21 2.7E-25 203.8 14.8 184 22-212 2-191 (455)
34 1xku_A Decorin; proteoglycan, 99.8 3.4E-20 1.2E-24 190.3 16.6 180 23-214 24-205 (330)
35 3t6q_A CD180 antigen; protein- 99.8 1.4E-20 4.8E-25 209.5 14.4 215 37-254 379-603 (606)
36 3vq2_A TLR4, TOLL-like recepto 99.8 2.7E-20 9.1E-25 207.2 14.6 183 28-214 7-194 (606)
37 2o6r_A Variable lymphocyte rec 99.8 9.6E-20 3.3E-24 169.2 15.5 140 24-169 1-140 (177)
38 2z7x_B TOLL-like receptor 1, v 99.8 9.1E-20 3.1E-24 199.1 17.7 201 37-242 305-511 (520)
39 2z63_A TOLL-like receptor 4, v 99.8 4.9E-20 1.7E-24 203.5 15.0 185 27-215 2-191 (570)
40 3v47_A TOLL-like receptor 5B a 99.8 8.8E-20 3E-24 195.7 14.3 162 80-241 274-437 (455)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3E-19 1E-23 196.9 17.9 199 37-240 334-546 (562)
42 1ziw_A TOLL-like receptor 3; i 99.8 1.2E-19 4.1E-24 204.8 14.8 183 27-215 1-185 (680)
43 3b43_A Titin; I-SET IG fold, e 99.8 1.1E-19 3.9E-24 200.6 12.4 206 231-459 357-570 (570)
44 2z81_A CD282 antigen, TOLL-lik 99.8 2.1E-19 7E-24 197.6 14.1 181 28-213 2-184 (549)
45 2xwt_C Thyrotropin receptor; s 99.8 4.9E-19 1.7E-23 172.8 14.1 175 36-215 33-219 (239)
46 3b43_A Titin; I-SET IG fold, e 99.8 8.4E-20 2.9E-24 201.7 8.9 241 231-489 71-329 (570)
47 2a38_A Titin; Z1Z2, structural 99.8 1.1E-19 3.8E-24 170.6 7.0 183 259-457 4-193 (194)
48 2ec8_A MAST/stem cell growth f 99.8 4.4E-18 1.5E-22 185.8 20.7 242 231-488 178-443 (524)
49 2id5_A Lingo-1, leucine rich r 99.8 6.5E-19 2.2E-23 190.2 13.8 151 58-213 14-164 (477)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.8E-19 2.7E-23 193.6 14.3 164 24-198 24-192 (562)
51 2yd6_A PTPRD protein; hydrolas 99.8 2.2E-19 7.5E-24 171.6 8.5 183 259-458 5-203 (212)
52 2yd1_A Tyrosine-protein phosph 99.8 5.8E-19 2E-23 168.6 10.7 185 259-459 5-200 (212)
53 2j8h_A Titin, connectin; cardi 99.8 3.9E-19 1.4E-23 167.3 9.3 186 259-458 3-196 (197)
54 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-18 3.8E-23 177.5 13.0 193 19-214 25-234 (313)
55 2z81_A CD282 antigen, TOLL-lik 99.8 1.7E-18 5.8E-23 190.3 15.0 200 37-241 313-539 (549)
56 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-18 4.4E-23 200.9 13.7 165 27-198 1-169 (844)
57 3j0a_A TOLL-like receptor 5; m 99.8 2.1E-18 7E-23 199.2 15.1 214 37-252 269-602 (844)
58 3lcy_A Titin; A-BAND, IG tande 99.8 7.7E-19 2.6E-23 165.0 9.1 183 259-459 6-196 (197)
59 3qs9_E FL cytokine receptor; i 99.8 1.4E-18 4.9E-23 189.4 12.1 234 231-486 201-442 (527)
60 2rik_A Titin; I-SET IG fold, p 99.8 1.9E-18 6.6E-23 172.5 11.9 182 259-461 4-193 (284)
61 2rik_A Titin; I-SET IG fold, p 99.8 3.9E-19 1.3E-23 177.6 6.8 205 231-458 71-283 (284)
62 2z63_A TOLL-like receptor 4, v 99.8 1.8E-18 6.1E-23 190.9 12.7 201 37-241 350-560 (570)
63 2c5d_C AXL oncogene, tyrosine- 99.8 6.3E-18 2.2E-22 158.9 14.7 181 260-457 2-191 (195)
64 3m19_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 167.2 14.1 155 56-215 15-169 (251)
65 3laf_A Deleted in colorectal c 99.8 4.6E-19 1.6E-23 186.4 7.3 209 231-460 187-402 (403)
66 2o6q_A Variable lymphocyte rec 99.8 6.2E-18 2.1E-22 168.2 14.7 169 28-215 3-171 (270)
67 3kld_A Contactin 4, axcam, BIG 99.8 9.5E-19 3.2E-23 183.3 8.8 203 231-458 167-382 (384)
68 3g39_A Variable lymphocyte rec 99.8 5E-18 1.7E-22 156.4 12.7 116 22-143 1-116 (170)
69 2wv3_A Neuroplastin; igcam, me 99.7 1.5E-18 5.1E-23 162.6 8.8 170 260-457 3-188 (190)
70 2yd9_A Receptor-type tyrosine- 99.7 2.8E-18 9.7E-23 173.4 11.2 189 259-457 5-199 (304)
71 3rbs_A Myomesin-1; immunoglobu 99.7 1E-18 3.5E-23 166.6 6.7 177 261-457 4-205 (207)
72 4fqp_A Poliovirus receptor; im 99.7 1.2E-17 4.2E-22 169.5 14.4 215 231-464 89-309 (313)
73 2vr9_A Roundabout 1, ROBO; imm 99.7 1.3E-18 4.3E-23 166.6 6.6 196 258-459 7-206 (217)
74 1xku_A Decorin; proteoglycan, 99.7 2.6E-17 8.8E-22 168.7 16.5 170 37-214 79-253 (330)
75 1ry7_B FGFR-3, fibroblast grow 99.7 1.7E-18 5.8E-23 177.3 7.6 190 269-463 132-331 (334)
76 2va4_A NCAM2, N-CAM 2, neural 99.7 1.2E-17 4E-22 156.3 12.4 174 260-457 2-191 (192)
77 2iep_A Muscle-specific kinase 99.7 1.7E-18 5.8E-23 162.1 6.1 180 259-458 6-189 (192)
78 2r9u_A Variable lymphocyte rec 99.7 2.6E-17 8.9E-22 152.2 13.7 116 22-143 4-119 (174)
79 2o6r_A Variable lymphocyte rec 99.7 2.4E-17 8.2E-22 152.9 13.3 136 106-241 29-166 (177)
80 3sgj_C Human FCG3A receptor; r 99.7 7.4E-18 2.5E-22 160.3 9.9 166 260-459 7-174 (204)
81 3o6n_A APL1; leucine-rich repe 99.7 2.6E-17 9E-22 172.8 14.7 131 37-169 48-181 (390)
82 2yd9_A Receptor-type tyrosine- 99.7 8.7E-18 3E-22 169.8 10.5 210 231-461 74-293 (304)
83 3qs7_E FL cytokine receptor; i 99.7 1.6E-17 5.4E-22 176.3 12.7 210 230-461 200-416 (423)
84 3rfs_A Internalin B, repeat mo 99.7 4.3E-17 1.5E-21 162.3 15.0 156 54-215 40-195 (272)
85 3ojm_B Fibroblast growth facto 99.7 5.5E-18 1.9E-22 163.4 8.3 197 260-461 15-223 (231)
86 1ogq_A PGIP-2, polygalacturona 99.7 6.9E-18 2.4E-22 171.7 9.2 175 37-215 79-258 (313)
87 1rhf_A Tyrosine-protein kinase 99.7 3.4E-17 1.2E-21 152.0 13.2 176 260-456 2-180 (182)
88 4fa8_A Secreted protein BARF1; 99.7 9.1E-19 3.1E-23 166.3 2.5 171 269-452 2-195 (203)
89 2wim_A N-CAM 2, NCAM2, neural 99.7 1.3E-18 4.4E-23 174.4 3.5 214 231-462 70-287 (291)
90 2ft3_A Biglycan; proteoglycan, 99.7 2.5E-17 8.5E-22 169.0 13.0 169 37-214 81-254 (332)
91 1qz1_A Neural cell adhesion mo 99.7 8.5E-18 2.9E-22 168.4 8.8 206 231-459 72-290 (291)
92 1epf_A NCAM, protein (neural c 99.7 1.1E-17 3.8E-22 156.5 8.5 173 260-451 2-183 (191)
93 4fom_A Poliovirus receptor-rel 99.7 1.3E-17 4.4E-22 168.8 9.3 210 231-461 84-302 (308)
94 2nzi_A Titin; IG-domain, FNIII 99.7 1.6E-17 5.5E-22 167.7 9.9 187 259-461 3-199 (305)
95 1e07_A Carcinoembryonic antige 99.7 1.9E-17 6.4E-22 185.5 11.2 206 231-462 352-560 (642)
96 3o53_A Protein LRIM1, AGAP0063 99.7 1.2E-17 4.1E-22 170.3 8.7 175 37-222 83-258 (317)
97 4fcg_A Uncharacterized protein 99.7 7.7E-17 2.6E-21 165.0 14.7 175 35-215 82-267 (328)
98 2v9r_A Roundabout homolog 1; p 99.7 5.7E-18 1.9E-22 161.1 5.8 186 259-461 8-204 (212)
99 1bih_A Hemolin; insect immunit 99.7 1.8E-17 6.1E-22 173.7 10.2 208 231-457 171-394 (395)
100 4fcg_A Uncharacterized protein 99.7 6.4E-17 2.2E-21 165.6 14.0 176 36-216 106-292 (328)
101 3p3y_A Neurofascin; IG domains 99.7 5.3E-18 1.8E-22 178.2 5.8 205 233-459 184-403 (404)
102 1p9a_G Platelet glycoprotein I 99.7 4.6E-17 1.6E-21 163.6 12.2 152 55-214 10-161 (290)
103 3oja_B Anopheles plasmodium-re 99.7 8.2E-17 2.8E-21 178.6 15.5 131 37-169 54-187 (597)
104 2jll_A NCAM2, neural cell adhe 99.7 3.5E-17 1.2E-21 171.2 11.7 182 260-461 1-196 (389)
105 1h6u_A Internalin H; cell adhe 99.7 1.5E-16 5E-21 161.5 15.9 165 36-215 43-209 (308)
106 3o6n_A APL1; leucine-rich repe 99.7 7.3E-17 2.5E-21 169.3 13.8 173 37-214 26-199 (390)
107 2v44_A NCAM2, neural cell adhe 99.7 3.4E-17 1.2E-21 153.0 9.9 172 262-455 4-183 (189)
108 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.9E-21 162.2 14.5 165 36-215 65-231 (308)
109 2o6s_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 152.1 13.9 125 58-187 10-134 (208)
110 2v5t_A NCAM2, N-CAM 2, neural 99.7 9.5E-18 3.3E-22 156.4 6.0 177 260-458 2-187 (189)
111 1h6t_A Internalin B; cell adhe 99.7 1.2E-16 4.1E-21 160.6 14.4 166 36-215 48-214 (291)
112 3oq3_B IFN-alpha/beta binding 99.7 6.2E-17 2.1E-21 165.7 12.1 203 231-457 99-328 (329)
113 3grw_A Fibroblast growth facto 99.7 9.7E-17 3.3E-21 156.0 12.8 177 268-461 23-220 (241)
114 3laf_A Deleted in colorectal c 99.7 4.5E-18 1.5E-22 178.8 3.5 214 231-460 92-312 (403)
115 4ezg_A Putative uncharacterize 99.7 8.6E-17 2.9E-21 152.0 11.9 151 54-214 43-194 (197)
116 3jz7_A MCAR, CAR, coxsackievir 99.7 1.1E-17 3.8E-22 159.1 5.8 180 264-459 4-212 (214)
117 1wwl_A Monocyte differentiatio 99.7 6E-17 2.1E-21 164.6 11.6 153 55-214 149-309 (312)
118 1fnl_A Low affinity immunoglob 99.7 6.7E-17 2.3E-21 149.4 10.9 155 260-448 7-162 (175)
119 1ozn_A Reticulon 4 receptor; N 99.7 8.2E-17 2.8E-21 161.4 12.2 178 37-217 83-264 (285)
120 2z7x_B TOLL-like receptor 1, v 99.7 8.6E-17 2.9E-21 175.5 13.1 156 36-199 2-162 (520)
121 1f2q_A High affinity immunoglo 99.7 3.8E-17 1.3E-21 151.1 8.7 167 260-460 4-172 (176)
122 2ec8_A MAST/stem cell growth f 99.7 8.4E-17 2.9E-21 175.6 12.8 209 231-461 283-512 (524)
123 3p2t_A Leukocyte immunoglobuli 99.7 6.4E-17 2.2E-21 152.4 10.1 167 260-448 5-180 (196)
124 3oja_B Anopheles plasmodium-re 99.7 1.2E-16 4.1E-21 177.3 13.6 173 37-214 32-205 (597)
125 1f97_A Junction adhesion molec 99.7 2.2E-17 7.7E-22 156.8 6.5 187 261-450 2-196 (212)
126 3oja_A Leucine-rich immune mol 99.7 4.5E-17 1.5E-21 175.9 9.3 173 37-220 83-256 (487)
127 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-16 3.9E-21 153.9 11.2 125 58-187 14-139 (220)
128 1xeu_A Internalin C; cellular 99.7 1.6E-16 5.4E-21 157.3 12.2 163 39-216 24-187 (263)
129 3g39_A Variable lymphocyte rec 99.7 3E-16 1E-20 144.5 12.8 132 107-241 11-151 (170)
130 2rcj_C Light chain; immunoglob 99.7 1E-16 3.4E-21 175.0 11.3 219 231-462 80-319 (523)
131 2v5m_A Dscam; neurobiology SPL 99.7 3E-17 1E-21 171.6 6.8 204 232-457 175-387 (388)
132 4dkd_C Macrophage colony-stimu 99.7 1.3E-16 4.4E-21 159.8 11.1 205 231-459 61-281 (292)
133 3bp6_B Programmed cell death 1 99.7 5.1E-16 1.8E-20 146.7 14.6 177 264-459 6-193 (202)
134 3rgz_A Protein brassinosteroid 99.7 1.7E-16 5.9E-21 181.2 13.4 177 37-215 445-694 (768)
135 2x1w_L Vascular endothelial gr 99.7 1.8E-16 6.2E-21 151.5 11.1 173 266-461 13-209 (213)
136 3ejj_X Macrophage colony-stimu 99.7 1.6E-16 5.5E-21 158.9 10.6 208 231-460 61-282 (289)
137 3qs7_E FL cytokine receptor; i 99.7 3.7E-16 1.3E-20 165.7 14.0 182 256-459 39-228 (423)
138 1itb_B Type 1 interleukin-1 re 99.7 2.6E-16 9E-21 159.6 12.2 206 231-458 72-313 (315)
139 1wwl_A Monocyte differentiatio 99.7 5.1E-18 1.7E-22 172.6 -0.7 177 38-215 37-242 (312)
140 3qs9_E FL cytokine receptor; i 99.7 6.2E-17 2.1E-21 176.5 7.7 201 231-459 300-510 (527)
141 1qz1_A Neural cell adhesion mo 99.7 1.3E-16 4.5E-21 159.7 9.4 170 260-448 2-180 (291)
142 3kld_A Contactin 4, axcam, BIG 99.7 5.5E-17 1.9E-21 169.9 6.9 212 231-461 73-296 (384)
143 3k0w_A Mucosa-associated lymph 99.7 2.2E-16 7.4E-21 151.5 10.5 171 259-458 17-201 (218)
144 1cs6_A Axonin-1; neural cell a 99.7 7.9E-17 2.7E-21 168.1 7.9 203 231-458 168-381 (382)
145 3knb_A Titin; IG-like, titin, 99.7 2.9E-16 1E-20 130.8 9.8 94 260-357 5-98 (100)
146 3rjd_A High affinity immunoglo 99.7 9.2E-16 3.2E-20 150.8 15.1 167 260-460 1-168 (262)
147 2o26_X MAST/stem cell growth f 99.7 1.4E-16 4.8E-21 159.6 9.2 204 231-461 67-290 (290)
148 1nbq_A JAM, junctional adhesio 99.7 5.1E-17 1.7E-21 154.0 5.6 191 260-453 4-201 (209)
149 4dep_C Interleukin-1 receptor 99.7 3E-17 1E-21 169.2 4.2 208 231-459 89-333 (349)
150 2y23_A Myomesin; structural pr 99.7 1.8E-16 6.3E-21 160.2 9.9 210 231-457 68-310 (312)
151 3ry4_A Low affinity immunoglob 99.7 2.7E-16 9.1E-21 144.2 10.1 154 261-448 5-159 (170)
152 3dmk_A DOWN syndrome cell adhe 99.7 2.4E-17 8.4E-22 189.8 3.7 201 231-461 316-528 (816)
153 3knb_B Obscurin-like protein 1 99.6 4.3E-16 1.5E-20 131.5 10.1 95 258-358 11-105 (107)
154 1e07_A Carcinoembryonic antige 99.6 2.9E-16 9.9E-21 175.8 11.9 232 231-489 174-419 (642)
155 3rjd_A High affinity immunoglo 99.6 1.4E-16 4.8E-21 156.7 8.1 188 231-450 58-250 (262)
156 2d3v_A Leukocyte immunoglobuli 99.6 2.2E-16 7.5E-21 148.8 8.9 167 260-448 5-181 (196)
157 1hng_A CD2; T lymphocyte adhes 99.6 2.3E-16 7.9E-21 146.1 8.5 166 268-457 4-174 (176)
158 3o4o_C Interleukin-1 receptor 99.6 2.2E-17 7.4E-22 169.6 0.9 219 231-458 91-334 (339)
159 1m9s_A Internalin B; cell inva 99.6 9.1E-16 3.1E-20 169.2 13.9 167 36-216 45-212 (605)
160 2gi7_A GPVI protein; IG-like d 99.6 3.8E-16 1.3E-20 145.6 9.3 159 259-448 7-169 (184)
161 3rgz_A Protein brassinosteroid 99.6 5.3E-16 1.8E-20 177.2 12.4 163 56-220 395-557 (768)
162 2v9t_B SLIT homolog 2 protein 99.6 6.6E-16 2.3E-20 148.5 11.1 129 58-215 14-142 (220)
163 2ell_A Acidic leucine-rich nuc 99.6 1.8E-16 6E-21 145.7 6.4 142 48-194 17-164 (168)
164 3u83_A Poliovirus receptor-rel 99.6 4.4E-16 1.5E-20 159.0 10.0 210 231-460 102-321 (331)
165 2rcj_C Light chain; immunoglob 99.6 5.9E-16 2E-20 168.9 11.5 207 231-456 188-417 (523)
166 1uct_A Immunoglobulin alpha FC 99.6 3.7E-16 1.3E-20 150.1 8.5 166 259-446 8-180 (218)
167 2r15_A Myomesin-1; sarcomeric 99.6 1E-16 3.5E-21 152.5 4.4 168 274-459 16-210 (212)
168 2r9u_A Variable lymphocyte rec 99.6 1.9E-15 6.6E-20 139.6 12.9 120 108-230 15-135 (174)
169 2ocw_A Polymeric-immunoglobuli 99.6 3.1E-16 1.1E-20 173.4 9.0 223 231-460 300-547 (585)
170 2y25_A Myomesin; structural pr 99.6 2.1E-17 7E-22 167.6 -0.5 210 230-459 70-315 (317)
171 3mtr_A N-CAM-1, NCAM-1, neural 99.6 1.1E-15 3.9E-20 146.0 11.7 188 259-458 18-208 (215)
172 3r4d_A CEA-related cell adhesi 99.6 2.2E-16 7.4E-21 149.8 6.5 175 263-451 2-191 (208)
173 2wim_A N-CAM 2, NCAM2, neural 99.6 6.5E-16 2.2E-20 154.6 10.0 175 259-449 3-179 (291)
174 1ugn_A LIR1, leukocyte immunog 99.6 4.1E-16 1.4E-20 147.1 7.8 167 260-448 5-182 (198)
175 3dmk_A DOWN syndrome cell adhe 99.6 9.8E-17 3.4E-21 184.8 4.2 208 232-458 591-808 (816)
176 4fmz_A Internalin; leucine ric 99.6 3.8E-15 1.3E-19 153.6 15.6 169 37-217 158-327 (347)
177 2y25_A Myomesin; structural pr 99.6 1.5E-16 5.3E-21 161.1 5.1 176 259-458 6-199 (317)
178 1oll_A NK receptor; immune sys 99.6 1.3E-15 4.5E-20 142.5 11.1 163 260-446 4-172 (188)
179 2z62_A TOLL-like receptor 4, v 99.6 1.6E-15 5.6E-20 151.1 12.4 153 58-215 10-163 (276)
180 4eco_A Uncharacterized protein 99.6 3E-15 1E-19 167.1 15.6 176 37-213 380-578 (636)
181 1vca_A VCAM-D1,2, human vascul 99.6 7.8E-16 2.7E-20 145.9 9.2 171 263-458 3-196 (202)
182 3cvr_A Invasion plasmid antige 99.6 3E-15 1E-19 163.3 15.0 137 36-194 61-197 (571)
183 3cvr_A Invasion plasmid antige 99.6 2.9E-15 9.9E-20 163.5 14.7 156 36-215 82-244 (571)
184 4glp_A Monocyte differentiatio 99.6 5E-16 1.7E-20 157.7 8.1 175 36-215 93-286 (310)
185 1qgc_4 Protein (immunoglobulin 99.6 2.4E-15 8.1E-20 159.9 13.6 126 231-356 85-215 (438)
186 1h6t_A Internalin B; cell adhe 99.6 3.1E-15 1.1E-19 150.3 13.5 148 54-215 45-192 (291)
187 4ezg_A Putative uncharacterize 99.6 2.7E-15 9.4E-20 141.6 12.2 147 36-191 46-195 (197)
188 3o4o_C Interleukin-1 receptor 99.6 7.3E-16 2.5E-20 158.1 8.7 179 260-459 18-220 (339)
189 1wio_A CD4, T-cell surface gly 99.6 1.1E-16 3.8E-21 166.0 2.5 197 231-459 77-293 (363)
190 3s97_C Contactin-1; carbonic a 99.6 9E-16 3.1E-20 144.3 8.6 175 266-458 14-200 (201)
191 2fbo_J V1V2;, variable region- 99.6 1.3E-15 4.4E-20 148.8 9.6 185 265-450 7-240 (250)
192 4f80_A Butyrophilin subfamily 99.6 7.2E-15 2.5E-19 141.5 14.7 174 268-459 12-213 (226)
193 3v2a_R Vascular endothelial gr 99.6 6.2E-17 2.1E-21 185.0 0.0 222 232-464 524-761 (772)
194 3b5h_A Cervical EMMPRIN, HAB18 99.6 8.6E-16 2.9E-20 142.8 7.7 158 270-458 8-182 (184)
195 3p3y_A Neurofascin; IG domains 99.6 1.6E-16 5.4E-21 166.9 2.1 209 231-460 87-312 (404)
196 3g06_A SSPH2 (leucine-rich rep 99.6 3.4E-15 1.2E-19 164.9 12.8 165 23-214 30-194 (622)
197 2z66_A Variable lymphocyte rec 99.6 7.9E-16 2.7E-20 155.8 7.0 179 37-217 104-290 (306)
198 4fmz_A Internalin; leucine ric 99.6 9.8E-15 3.3E-19 150.4 14.6 163 37-214 135-300 (347)
199 4glp_A Monocyte differentiatio 99.6 3.2E-15 1.1E-19 151.7 10.6 157 56-214 92-264 (310)
200 4eco_A Uncharacterized protein 99.6 9.6E-15 3.3E-19 163.0 14.9 174 37-212 356-547 (636)
201 1jbj_A CD3 epsilon and gamma e 99.6 2.7E-15 9.2E-20 140.2 8.4 146 271-449 10-179 (186)
202 3oja_A Leucine-rich immune mol 99.6 9.5E-16 3.3E-20 165.5 5.9 177 36-218 101-286 (487)
203 3o53_A Protein LRIM1, AGAP0063 99.6 7.2E-16 2.5E-20 157.0 4.4 169 36-210 101-271 (317)
204 1ry7_B FGFR-3, fibroblast grow 99.6 1.8E-16 6.3E-21 162.1 -0.2 172 266-460 14-217 (334)
205 4ecn_A Leucine-rich repeat pro 99.6 2.4E-14 8E-19 163.6 16.4 176 37-213 622-818 (876)
206 1o6v_A Internalin A; bacterial 99.6 2.5E-14 8.4E-19 153.8 14.9 167 36-216 201-368 (466)
207 2c1o_A IGK-C protein; FAB frag 99.6 1.1E-14 3.8E-19 142.8 11.2 201 231-448 14-244 (254)
208 3sbw_C Programmed cell death 1 99.6 2.4E-14 8.1E-19 137.1 13.1 179 266-460 7-212 (222)
209 1o6v_A Internalin A; bacterial 99.5 4.3E-14 1.5E-18 151.9 15.9 164 36-213 48-233 (466)
210 1m9s_A Internalin B; cell inva 99.5 1.4E-14 4.6E-19 159.9 12.1 148 54-215 42-189 (605)
211 1bih_A Hemolin; insect immunit 99.5 4.8E-15 1.6E-19 155.1 8.1 183 258-452 4-193 (395)
212 3vh8_G Killer cell immunoglobu 99.5 1.3E-14 4.5E-19 147.3 11.1 194 231-448 84-297 (316)
213 3mj6_A Junctional adhesion mol 99.5 1.6E-15 5.4E-20 150.0 4.1 192 261-462 6-240 (268)
214 3mj8_L Stimulatory hamster ant 99.5 1.7E-15 5.9E-20 144.3 4.2 178 262-455 3-209 (213)
215 1cs6_A Axonin-1; neural cell a 99.5 2.1E-15 7.1E-20 157.3 5.1 213 231-461 72-295 (382)
216 1xeu_A Internalin C; cellular 99.5 2.5E-14 8.6E-19 141.4 12.6 146 36-195 43-190 (263)
217 2v5m_A Dscam; neurobiology SPL 99.5 3.9E-15 1.3E-19 155.5 7.1 175 260-448 3-190 (388)
218 4ecn_A Leucine-rich repeat pro 99.5 3.9E-14 1.3E-18 161.8 15.8 173 37-212 598-787 (876)
219 2cqv_A MLCK, myosin light chai 99.5 3.1E-14 1.1E-18 121.4 11.4 100 258-363 5-104 (114)
220 4frw_A Poliovirus receptor-rel 99.5 9.4E-15 3.2E-19 138.7 8.7 178 266-457 5-209 (218)
221 1z7z_I Intercellular adhesion 99.5 1.6E-14 5.5E-19 154.2 11.5 207 232-466 60-289 (450)
222 3bz5_A Internalin-J, INLJ; leu 99.5 9.5E-14 3.2E-18 148.5 16.6 156 36-212 44-202 (457)
223 3d9a_L Light chain of hyhel10 99.5 1.9E-14 6.5E-19 137.0 10.0 175 263-449 4-203 (213)
224 2ell_A Acidic leucine-rich nuc 99.5 1.2E-14 4E-19 133.4 8.2 133 79-214 22-160 (168)
225 3oq3_B IFN-alpha/beta binding 99.5 4.5E-15 1.5E-19 151.8 5.8 175 266-461 35-226 (329)
226 3vh8_G Killer cell immunoglobu 99.5 3.1E-14 1.1E-18 144.6 11.8 165 259-448 23-199 (316)
227 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 4E-19 130.5 7.6 127 54-185 16-148 (149)
228 2ny1_B T-cell surface glycopro 99.5 7.9E-15 2.7E-19 136.3 6.7 167 269-461 4-181 (184)
229 3bz5_A Internalin-J, INLJ; leu 99.5 1.1E-13 3.7E-18 148.0 16.4 158 36-213 66-224 (457)
230 1p6f_A NKP46, natural cytotoxi 99.5 2.4E-14 8.3E-19 139.6 10.3 163 260-446 7-175 (242)
231 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-14 5.4E-19 133.7 8.4 131 55-190 19-153 (176)
232 1z7z_I Intercellular adhesion 99.5 4.3E-14 1.5E-18 150.9 12.9 227 230-488 151-407 (450)
233 2ocw_A Polymeric-immunoglobuli 99.5 7.1E-14 2.4E-18 154.4 15.1 201 266-469 6-231 (585)
234 3qp3_A Titin; I-SET IG-like, s 99.5 5.1E-14 1.8E-18 117.6 10.6 95 257-357 5-99 (103)
235 1g1c_A Immunoglobulin-like dom 99.5 6.3E-14 2.1E-18 116.0 10.8 93 260-357 5-97 (99)
236 2wng_A Tyrosine-protein phosph 99.5 6.7E-14 2.3E-18 142.7 13.0 203 231-451 84-311 (327)
237 2wng_A Tyrosine-protein phosph 99.5 4.4E-15 1.5E-19 151.5 4.2 181 262-456 5-216 (327)
238 4fmk_A Poliovirus receptor-rel 99.5 4.9E-15 1.7E-19 141.4 4.3 183 267-455 8-213 (225)
239 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.3E-18 133.4 14.2 131 36-169 42-175 (229)
240 4dep_C Interleukin-1 receptor 99.5 2.1E-14 7.1E-19 147.8 9.1 191 259-459 6-217 (349)
241 1wit_A Twitchin 18TH IGSF modu 99.5 2.5E-14 8.5E-19 117.2 7.6 89 260-356 2-92 (93)
242 2nzi_A Titin; IG-domain, FNIII 99.5 5.4E-15 1.9E-19 149.0 4.3 205 231-455 72-286 (305)
243 1wio_A CD4, T-cell surface gly 99.5 2.2E-14 7.4E-19 148.7 8.8 191 231-458 152-362 (363)
244 2oz4_A Intercellular adhesion 99.5 1.1E-14 3.8E-19 143.9 6.3 186 235-459 75-264 (265)
245 1u2h_A APEG-1, aortic preferen 99.5 7.9E-14 2.7E-18 115.4 10.4 94 259-357 4-97 (99)
246 1nkr_A P58-CL42 KIR; inhibitor 99.5 4.9E-14 1.7E-18 133.2 10.1 162 260-445 8-183 (201)
247 2o26_X MAST/stem cell growth f 99.5 4.6E-14 1.6E-18 141.2 10.4 169 259-458 11-182 (290)
248 2wfh_A SLIT homolog 2 protein 99.5 8E-14 2.7E-18 131.0 11.4 102 85-190 14-115 (193)
249 1igt_B IGG2A intact antibody - 99.5 6.5E-15 2.2E-19 157.1 4.3 209 231-454 89-336 (444)
250 2edj_A Roundabout homolog 2; K 99.5 7.1E-14 2.4E-18 116.0 9.7 91 259-357 7-97 (100)
251 3mjg_X Beta-type platelet-deri 99.5 1.7E-15 5.9E-20 151.5 -0.5 202 231-461 61-280 (289)
252 2if7_A SLAM family member 6; N 99.5 3.3E-14 1.1E-18 133.6 8.2 168 266-452 4-185 (193)
253 1a9n_A U2A', U2A'; complex (nu 99.5 3E-14 1E-18 131.7 7.8 132 79-214 17-153 (176)
254 2kkq_A Myotilin; unknown funct 99.5 1.2E-13 4.2E-18 118.2 11.0 97 259-359 14-110 (116)
255 1sy6_A T-cell surface glycopro 99.5 2.2E-14 7.6E-19 136.1 6.9 145 272-448 15-192 (204)
256 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.5 1.2E-14 4.1E-19 143.1 5.2 188 261-449 4-236 (256)
257 2je0_A Acidic leucine-rich nuc 99.5 2.5E-14 8.6E-19 128.3 6.9 130 79-210 15-149 (149)
258 3u83_A Poliovirus receptor-rel 99.5 5.3E-14 1.8E-18 143.4 10.1 190 259-461 13-232 (331)
259 2oz4_A Intercellular adhesion 99.5 2.6E-13 8.9E-18 134.0 14.8 160 270-461 13-184 (265)
260 1f3r_B FV antibody fragment; I 99.5 7.1E-14 2.4E-18 137.6 10.6 194 266-459 6-245 (257)
261 2kdg_A Myotilin; immonoglobuli 99.5 9.8E-14 3.3E-18 115.1 9.8 94 259-357 4-97 (100)
262 3ejj_X Macrophage colony-stimu 99.5 1.5E-14 5E-19 144.5 5.6 171 260-459 4-181 (289)
263 2jll_A NCAM2, neural cell adhe 99.5 1.4E-14 4.7E-19 151.4 5.5 205 231-453 73-282 (389)
264 4i0k_A CD276 antigen; immunogl 99.5 1.7E-14 6E-19 138.1 5.6 178 269-461 4-208 (222)
265 1w8a_A SLIT protein; signaling 99.5 9.1E-14 3.1E-18 130.5 10.4 104 84-190 11-115 (192)
266 3s96_B 3B5H10 FAB light chain; 99.5 8.3E-15 2.8E-19 140.0 3.3 178 261-454 2-215 (218)
267 3nl4_L Antigen binding fragmen 99.5 1.8E-14 6.2E-19 137.1 5.4 171 261-443 2-198 (213)
268 3sb4_A Hypothetical leucine ri 99.5 5.4E-14 1.9E-18 143.9 9.3 154 55-213 49-309 (329)
269 1wwb_X Protein (brain derived 99.5 2.2E-13 7.5E-18 113.9 11.1 85 273-358 14-98 (103)
270 3v2a_R Vascular endothelial gr 99.5 5.2E-14 1.8E-18 160.7 9.6 219 231-459 193-419 (772)
271 2dm2_A Palladin; beta-sandwich 99.5 8E-14 2.8E-18 118.0 8.2 100 259-362 7-106 (110)
272 3irg_B Obscurin-like protein 1 99.5 1.6E-13 5.6E-18 115.3 10.0 96 256-357 9-104 (107)
273 1lk3_L 9D7 light chain; antige 99.5 1.7E-13 5.7E-18 130.2 11.3 170 267-448 7-201 (210)
274 4ay9_X Follicle-stimulating ho 99.5 1.6E-13 5.6E-18 141.6 11.9 152 58-214 12-167 (350)
275 3puc_A Titin; I-SET IG-like do 99.5 2.5E-13 8.6E-18 112.3 10.6 93 259-357 5-97 (99)
276 1itb_B Type 1 interleukin-1 re 99.5 4.8E-15 1.7E-19 150.2 -0.0 167 268-450 13-190 (315)
277 3irg_A Titin; IG-like, titin, 99.5 2E-13 6.9E-18 113.0 9.9 94 260-357 5-98 (100)
278 1igy_B IGG1 intact antibody MA 99.5 3.3E-13 1.1E-17 143.5 14.0 208 231-454 88-326 (434)
279 3rfe_A Platelet glycoprotein I 99.5 1.1E-13 3.8E-18 120.6 8.3 111 23-259 1-115 (130)
280 2eo9_A Roundabout homolog 1; b 99.5 9.7E-14 3.3E-18 119.1 7.8 93 259-359 7-99 (118)
281 2wqr_A IG epsilon chain C regi 99.5 2.8E-13 9.4E-18 138.0 12.3 178 259-449 6-204 (323)
282 4fqp_A Poliovirus receptor; im 99.5 5.6E-13 1.9E-17 135.0 14.5 182 263-459 3-215 (313)
283 1ccz_A Protein (CD58); LFA-3, 99.5 1.2E-13 4E-18 127.2 8.6 162 268-456 3-168 (171)
284 4dkd_C Macrophage colony-stimu 99.4 2.2E-14 7.6E-19 143.4 3.9 172 259-459 3-181 (292)
285 2dav_A SLOW MYBP-C, myosin-bin 99.4 2.6E-13 8.7E-18 116.8 9.9 106 261-366 8-120 (126)
286 1he7_A High affinity nerve gro 99.4 3.2E-13 1.1E-17 116.1 10.5 86 274-359 14-100 (126)
287 1b6u_A KIR2DL3, P58 killer cel 99.4 3E-13 1E-17 133.0 11.8 163 260-446 7-183 (257)
288 2dm3_A KIAA0992 protein, palla 99.4 6.1E-14 2.1E-18 118.6 5.9 99 259-362 8-106 (110)
289 1jl5_A Outer protein YOPM; leu 99.4 7.2E-13 2.5E-17 141.6 15.6 164 37-215 74-251 (454)
290 1hnf_A CD2; T lymphocyte adhes 99.4 1E-13 3.4E-18 128.9 7.8 165 267-455 6-177 (182)
291 1jl5_A Outer protein YOPM; leu 99.4 7.7E-13 2.6E-17 141.3 15.8 158 37-215 114-271 (454)
292 3sob_L Antibody light chain; b 99.4 5.5E-14 1.9E-18 136.0 6.3 178 260-449 24-226 (237)
293 3g06_A SSPH2 (leucine-rich rep 99.4 8.8E-13 3E-17 145.6 16.5 160 37-215 124-298 (622)
294 2e7c_A Myosin-binding protein 99.4 5.2E-13 1.8E-17 114.5 11.4 96 256-358 17-115 (118)
295 3sb4_A Hypothetical leucine ri 99.4 1.8E-13 6.3E-18 139.9 10.0 103 104-208 225-328 (329)
296 3r06_A Anti-mouse CD3epsilon a 99.4 5.4E-14 1.8E-18 133.8 5.5 106 261-366 2-116 (213)
297 3kvq_A Vascular endothelial gr 99.4 1.1E-13 3.9E-18 116.5 6.7 94 259-360 9-102 (108)
298 2ghw_B Anti-SARS SCFV antibody 99.4 3.3E-13 1.1E-17 131.7 11.0 93 266-358 8-119 (247)
299 3pv7_A B7-H6, IG-like domain-c 99.4 1.6E-13 5.3E-18 134.1 8.7 175 267-457 10-224 (248)
300 4fom_A Poliovirus receptor-rel 99.4 2.7E-13 9.2E-18 136.8 10.6 180 268-460 7-211 (308)
301 1c1e_H Catalytic antibody 1E9 99.4 7.5E-13 2.6E-17 126.6 13.1 178 266-456 6-217 (219)
302 3goz_A Leucine-rich repeat-con 99.4 5.9E-14 2E-18 145.6 5.7 160 54-215 21-210 (362)
303 3tv3_L PGT128 light chain, IG 99.4 3.1E-14 1.1E-18 135.3 3.2 177 263-454 4-206 (211)
304 2yr3_A Myosin light chain kina 99.4 1.9E-13 6.4E-18 113.2 7.6 90 258-356 9-98 (99)
305 1nct_A Titin; cell adhesion, g 99.4 1.5E-13 5.1E-18 115.6 6.8 95 257-357 11-105 (106)
306 2bk8_A Connectin, M1, titin he 99.4 8.3E-13 2.9E-17 108.9 11.3 90 263-358 4-94 (97)
307 3goz_A Leucine-rich repeat-con 99.4 4.7E-14 1.6E-18 146.3 4.4 180 36-215 24-239 (362)
308 3uzq_A Anti-dengue MAB 4E11; d 99.4 1E-13 3.4E-18 136.1 6.5 186 263-448 4-232 (253)
309 2pet_A Lutheran blood group gl 99.4 9.3E-14 3.2E-18 133.7 6.1 104 266-369 6-125 (231)
310 3auv_A SC-DSFV derived from th 99.4 4.9E-13 1.7E-17 133.0 11.2 99 260-358 12-119 (276)
311 1nqb_A Single-chain antibody f 99.4 1.4E-13 4.9E-18 135.4 7.0 195 265-462 5-236 (256)
312 2ckn_A Basic fibroblast growth 99.4 3E-13 1E-17 111.2 7.8 87 259-356 8-94 (95)
313 1dr9_A B7-1 (CD80), T lymphocy 99.4 4.5E-13 1.5E-17 126.2 9.9 171 269-455 3-197 (201)
314 1qgc_4 Protein (immunoglobulin 99.4 1.3E-12 4.5E-17 138.6 14.7 181 263-455 4-213 (438)
315 2y23_A Myomesin; structural pr 99.4 3.8E-13 1.3E-17 135.7 9.8 168 268-454 9-197 (312)
316 3cx2_A Myosin-binding protein 99.4 8.6E-13 2.9E-17 111.3 10.3 98 260-357 4-107 (108)
317 3bkj_L WO2 IGG2A FAB fragment 99.4 8.6E-13 2.9E-17 129.3 11.8 177 260-448 34-240 (252)
318 2zg1_A Sialic acid-binding IG- 99.4 1.3E-12 4.5E-17 124.1 12.4 169 266-450 6-204 (214)
319 1nfd_E H57 FAB; complex (immun 99.4 3.7E-14 1.3E-18 134.9 1.4 173 267-451 6-204 (212)
320 2ca6_A RAN GTPase-activating p 99.4 5.1E-14 1.7E-18 147.4 2.4 134 55-190 94-257 (386)
321 1fhg_A Telokin; immunoglobulin 99.4 1.2E-12 4.3E-17 118.0 11.2 96 258-358 39-134 (154)
322 2ast_B S-phase kinase-associat 99.4 1.2E-13 4.1E-18 141.5 4.5 132 80-211 117-257 (336)
323 3esu_F Antibody 14B7* light ch 99.4 2.5E-13 8.5E-18 132.8 6.4 98 261-358 5-111 (250)
324 2wqr_A IG epsilon chain C regi 99.4 2.3E-13 7.9E-18 138.6 6.4 120 232-354 83-210 (323)
325 1waa_A Titin; metal binding pr 99.4 1.3E-12 4.4E-17 106.9 9.6 87 260-357 5-91 (93)
326 2p1y_A Bispecific alpha/beta T 99.4 1.2E-13 4E-18 134.0 3.9 183 263-446 3-222 (238)
327 2yuz_A Myosin-binding protein 99.4 6.1E-13 2.1E-17 110.5 7.7 89 260-358 7-95 (100)
328 2rgs_A I, IG gamma-2B heavy ch 99.4 8E-14 2.7E-18 133.6 2.6 90 258-348 7-102 (218)
329 3juy_B 3B3 single chain varian 99.4 1.6E-12 5.5E-17 127.6 12.0 188 260-447 6-244 (256)
330 1gxe_A Myosin binding protein 99.4 5.5E-13 1.9E-17 117.8 7.6 86 267-357 25-138 (139)
331 3gkz_A Anti-methamphetamine si 99.4 3.7E-12 1.3E-16 125.0 14.5 183 264-447 12-236 (257)
332 3caf_A Fibroblast growth facto 99.4 7.4E-13 2.5E-17 109.8 7.6 84 268-356 16-99 (100)
333 2lu7_A Obscurin-like protein 1 99.4 9E-13 3.1E-17 105.5 7.7 80 267-357 3-82 (84)
334 3bfo_A Mucosa-associated lymph 99.4 1.5E-12 5E-17 106.1 9.1 84 260-358 3-87 (91)
335 3umt_A SCFV heavy chain and li 99.4 3.9E-13 1.3E-17 132.1 6.7 182 266-447 8-232 (256)
336 3bqu_C 3H6 FAB light chain; be 99.4 5.1E-13 1.8E-17 129.0 7.4 177 260-448 23-224 (233)
337 2xzc_L FAB A.17 light chain; i 99.4 2.1E-12 7.3E-17 123.1 11.3 171 267-449 7-205 (216)
338 1igt_B IGG2A intact antibody - 99.4 1.7E-13 5.7E-18 146.2 3.7 120 234-354 196-337 (444)
339 1q0x_L FAB 9B1, light chain; a 99.4 1.6E-12 5.6E-17 123.4 10.3 173 267-451 7-207 (212)
340 1hzh_H IGG, immunoglobulin hea 99.4 9.7E-14 3.3E-18 148.6 1.8 123 231-356 89-227 (457)
341 1za6_B IGG heavy chain; immuno 99.4 4.8E-12 1.7E-16 130.0 14.4 175 266-453 6-211 (344)
342 1moe_A Anti-CEA MAB T84.66; an 99.4 3.2E-12 1.1E-16 123.9 12.2 97 262-358 3-112 (240)
343 2edn_A Myosin-binding protein 99.4 1E-12 3.5E-17 111.8 7.5 99 260-358 12-116 (118)
344 1qok_A MFE-23 recombinant anti 99.4 2E-12 6.9E-17 129.0 10.9 95 264-358 30-146 (282)
345 3rbs_A Myomesin-1; immunoglobu 99.4 9.4E-13 3.2E-17 125.1 8.1 88 260-356 117-205 (207)
346 3omz_A Human vdelta1 gamma del 99.4 4E-13 1.4E-17 132.3 5.5 186 260-445 2-231 (259)
347 4b8c_D Glucose-repressible alc 99.4 5E-13 1.7E-17 150.9 7.0 169 38-215 177-355 (727)
348 3eow_R Poliovirus receptor; im 99.3 6.5E-14 2.2E-18 134.2 -0.3 178 267-459 6-212 (221)
349 3d9a_H Heavy chain of hyhel10 99.3 3.2E-12 1.1E-16 121.3 11.5 173 266-452 6-207 (210)
350 1iga_A IGA1; immunoglobulin; N 99.3 1.3E-12 4.3E-17 140.7 9.6 124 231-356 90-225 (475)
351 2dru_A Chimera of CD48 antigen 99.3 1.5E-12 5.1E-17 120.8 8.7 163 268-455 7-177 (180)
352 2j6e_L IGM, FAB light chain; a 99.3 3.6E-13 1.2E-17 130.1 4.5 192 261-453 21-229 (234)
353 2ast_B S-phase kinase-associat 99.3 5.6E-13 1.9E-17 136.5 6.1 173 37-211 96-282 (336)
354 1svz_A Immunoglobulin;, single 99.3 2.4E-12 8.3E-17 125.5 10.3 97 262-358 3-113 (247)
355 2znx_A SCFV; fluorotryptohpan, 99.3 3.3E-12 1.1E-16 124.4 11.0 97 262-358 3-108 (242)
356 4b8c_D Glucose-repressible alc 99.3 8.4E-13 2.9E-17 149.1 7.6 134 55-194 224-358 (727)
357 1mju_H Immunoglobulin MS6-12; 99.3 5.6E-12 1.9E-16 121.5 12.2 183 266-461 6-219 (227)
358 2ca6_A RAN GTPase-activating p 99.3 5E-13 1.7E-17 139.9 5.1 181 37-217 97-319 (386)
359 4dzb_B Vbeta2 (MAIT T cell rec 99.3 2.9E-12 9.8E-17 124.8 10.2 93 262-357 3-116 (246)
360 1q9r_B S25-2 FAB (IGG1K) heavy 99.3 8.1E-12 2.8E-16 119.6 12.7 177 266-455 6-219 (222)
361 1pz5_B Heavy chain of FAB (SYA 99.3 5.4E-12 1.9E-16 120.7 11.2 176 266-454 6-216 (220)
362 1ds9_A Outer arm dynein; leuci 99.3 1.2E-14 4E-19 137.3 -7.8 108 79-191 46-154 (198)
363 2a38_A Titin; Z1Z2, structural 99.3 2.8E-12 9.6E-17 119.6 8.1 120 231-356 73-193 (194)
364 1za6_B IGG heavy chain; immuno 99.3 2.3E-13 8E-18 139.9 0.7 119 231-353 89-212 (344)
365 3ux9_B SCFV antibody; five hel 99.3 4.8E-12 1.6E-16 124.1 10.0 92 267-358 9-113 (256)
366 2vol_A Murine IGG FC; FC, zinc 99.3 4.4E-13 1.5E-17 127.3 2.5 87 261-348 2-94 (207)
367 2lvc_A Obscurin-like protein 1 99.3 3.3E-12 1.1E-16 103.9 7.3 86 260-356 4-91 (91)
368 1wwc_A Protein (NT-3 growth fa 99.3 1.2E-11 4.1E-16 105.9 11.1 81 276-358 21-101 (118)
369 1x44_A Myosin-binding protein 99.3 9.4E-12 3.2E-16 103.8 9.9 89 261-359 8-97 (103)
370 3so5_A LIG-3, leucine-rich rep 99.3 9.5E-12 3.2E-16 104.8 10.0 97 260-356 10-111 (112)
371 2wv3_A Neuroplastin; igcam, me 99.3 6.5E-12 2.2E-16 117.0 9.9 119 231-356 66-188 (190)
372 1dce_A Protein (RAB geranylger 99.3 5.7E-12 1.9E-16 138.0 10.5 148 56-208 410-567 (567)
373 2v5t_A NCAM2, N-CAM 2, neural 99.3 2.2E-12 7.6E-17 119.7 6.1 118 231-356 67-186 (189)
374 2edf_A Obscurin; beta-sandwich 99.3 6.3E-12 2.2E-16 104.8 8.2 91 259-360 7-97 (103)
375 2v9t_A Roundabout homolog 1; s 99.3 5.4E-12 1.8E-16 107.9 7.8 96 258-356 7-107 (117)
376 2cry_A KIN of IRRE-like protei 99.3 7.1E-13 2.4E-17 114.4 2.2 98 258-358 12-113 (122)
377 2e6p_A Obscurin-like protein 1 99.3 5.8E-12 2E-16 105.2 7.7 87 260-357 7-96 (104)
378 2yd1_A Tyrosine-protein phosph 99.3 4.5E-12 1.5E-16 120.4 7.9 122 231-361 75-203 (212)
379 1dce_A Protein (RAB geranylger 99.3 7.6E-12 2.6E-16 137.0 10.7 171 41-218 356-550 (567)
380 3mjg_X Beta-type platelet-deri 99.3 9.4E-12 3.2E-16 124.1 10.1 127 231-358 151-278 (289)
381 2cr3_A Basic fibroblast growth 99.3 5.9E-12 2E-16 104.2 7.1 83 266-359 9-91 (99)
382 2gjj_A A21 single-chain antibo 99.3 1.7E-12 5.7E-17 128.3 4.4 98 260-357 5-117 (264)
383 1l6x_A Immunoglobulin gamma-1 99.3 1E-12 3.6E-17 124.6 2.7 93 261-354 2-100 (207)
384 4fa8_A Secreted protein BARF1; 99.3 2.9E-12 9.8E-17 121.3 5.6 114 231-351 79-195 (203)
385 1gl4_B Basement membrane-speci 99.3 1.1E-11 3.9E-16 102.1 8.3 87 260-357 9-97 (98)
386 2r15_A Myomesin-1; sarcomeric 99.3 8.1E-12 2.8E-16 118.3 8.5 88 265-357 122-209 (212)
387 1op3_H FAB 2G12, heavy chain; 99.3 3E-11 1E-15 116.1 12.4 172 266-451 6-217 (225)
388 3nl4_H Antigen binding fragmen 99.3 7E-11 2.4E-15 112.5 14.9 179 265-457 4-212 (215)
389 3s35_X Vascular endothelial gr 99.3 1.6E-11 5.6E-16 105.6 9.4 90 268-358 16-110 (122)
390 2yuv_A Myosin-binding protein 99.3 4.3E-11 1.5E-15 99.1 11.5 89 259-358 6-95 (100)
391 4hwu_A Fibroblast growth facto 99.2 1.4E-11 4.8E-16 101.0 8.3 82 266-359 7-88 (95)
392 2w59_A IGY FCU3-4; immunoglobu 99.2 1E-11 3.5E-16 120.0 8.5 93 260-354 12-109 (231)
393 2dlt_A Myosin binding protein 99.2 7.6E-12 2.6E-16 105.0 6.3 89 259-356 7-95 (106)
394 2gki_A Nuclease; anti-DNA anti 99.2 4.6E-12 1.6E-16 127.1 5.9 181 266-446 28-258 (291)
395 3bae_H WO2 IGG2A FAB fragment 99.2 2.6E-11 8.9E-16 116.8 10.8 176 266-454 6-221 (228)
396 3qr2_A Basigin; CD147, EMMPRIN 99.2 1.4E-11 4.8E-16 108.6 8.2 94 256-350 17-118 (137)
397 3s97_C Contactin-1; carbonic a 99.2 8.5E-12 2.9E-16 116.8 7.2 117 231-357 76-200 (201)
398 1i1c_A IGG2A, IG gamma-2A chai 99.2 1.6E-12 5.4E-17 126.5 2.1 90 260-350 15-110 (239)
399 3nfj_J T cell receptor beta ch 99.2 2.1E-11 7.3E-16 118.6 10.1 95 263-357 4-115 (245)
400 3b5h_A Cervical EMMPRIN, HAB18 99.2 1.5E-11 5.3E-16 113.7 8.7 119 230-357 58-182 (184)
401 2fbj_H IGA-kappa J539 FAB (hea 99.2 1E-10 3.5E-15 112.0 14.7 172 266-450 6-212 (220)
402 3m45_A Cell adhesion molecule 99.2 2.7E-11 9.1E-16 101.6 9.2 96 259-357 5-105 (108)
403 2ens_A Advanced glycosylation 99.2 4.6E-12 1.6E-16 104.2 4.3 82 260-356 10-93 (96)
404 2v44_A NCAM2, neural cell adhe 99.2 8.8E-12 3E-16 115.9 6.6 118 231-356 68-185 (189)
405 2k1m_A Myosin-binding protein 99.2 2.8E-11 9.7E-16 99.2 8.9 86 261-357 9-94 (95)
406 1ds9_A Outer arm dynein; leuci 99.2 1.3E-13 4.6E-18 130.0 -6.0 131 83-219 25-158 (198)
407 2x1w_L Vascular endothelial gr 99.2 1.8E-11 6.2E-16 116.5 8.8 128 231-358 74-207 (213)
408 1rhf_A Tyrosine-protein kinase 99.2 2.2E-11 7.6E-16 112.4 9.1 110 231-356 70-181 (182)
409 1iga_A IGA1; immunoglobulin; N 99.2 3.1E-11 1.1E-15 129.8 11.5 103 260-365 246-352 (475)
410 2eny_A Obscurin; beta-sandwich 99.2 1.1E-11 3.7E-16 103.7 6.2 90 260-359 8-98 (104)
411 3fku_X Neutralizing antibody F 99.2 3.8E-11 1.3E-15 119.6 11.2 81 263-344 4-101 (280)
412 1epf_A NCAM, protein (neural c 99.2 9E-12 3.1E-16 115.9 6.2 118 231-356 72-189 (191)
413 2v9r_A Roundabout homolog 1; p 99.2 6.4E-12 2.2E-16 118.9 5.2 118 231-357 82-201 (212)
414 2edh_A Obscurin; structural ge 99.2 9.8E-11 3.3E-15 99.3 11.9 90 258-359 17-106 (113)
415 2cr6_A KIAA1556 protein, obscu 99.2 3.5E-11 1.2E-15 102.5 9.0 90 260-358 13-102 (115)
416 2dku_A KIAA1556 protein; beta- 99.2 3.7E-11 1.3E-15 100.0 8.7 93 259-362 7-99 (103)
417 2j8h_A Titin, connectin; cardi 99.2 1.4E-11 4.8E-16 115.2 6.7 119 231-357 72-196 (197)
418 4fdw_A Leucine rich hypothetic 99.2 8.1E-11 2.8E-15 123.2 13.1 166 37-211 160-333 (401)
419 4ei6_B Vbeta16 XV19 type II na 99.2 7.1E-11 2.4E-15 114.8 11.6 93 261-357 3-115 (245)
420 1gsm_A Madcam-1, mucosal addre 99.2 5.6E-11 1.9E-15 112.1 10.3 78 269-358 16-95 (210)
421 2c5d_C AXL oncogene, tyrosine- 99.2 2.1E-11 7.1E-16 114.0 7.3 112 231-356 78-191 (195)
422 2edk_A Myosin-binding protein 99.2 7.8E-12 2.7E-16 103.9 3.8 88 259-356 7-97 (101)
423 3k0w_A Mucosa-associated lymph 99.2 2.2E-11 7.6E-16 116.3 7.5 113 231-358 75-202 (218)
424 1igy_B IGG1 intact antibody MA 99.2 2.2E-13 7.7E-18 144.7 -7.2 115 234-349 192-322 (434)
425 1z7x_W Ribonuclease inhibitor; 99.2 1.3E-12 4.6E-17 139.8 -1.3 176 37-214 173-383 (461)
426 2yd6_A PTPRD protein; hydrolas 99.2 1.4E-11 4.8E-16 117.1 5.9 121 231-356 74-202 (212)
427 1f97_A Junction adhesion molec 99.2 1E-11 3.6E-16 117.3 4.9 127 231-358 75-207 (212)
428 2iep_A Muscle-specific kinase 99.2 1.2E-11 4.2E-16 115.0 5.3 117 231-357 72-189 (192)
429 1x9q_A SCFV, 4M5.3 anti-fluore 99.2 9.7E-12 3.3E-16 123.0 4.8 99 259-357 14-126 (268)
430 1dee_B IGM RF 2A2; FAB-IBP com 99.2 1.5E-10 5E-15 111.1 12.6 92 266-357 6-120 (223)
431 1z7x_W Ribonuclease inhibitor; 99.2 5.1E-12 1.7E-16 135.3 2.4 175 38-214 7-212 (461)
432 2vr9_A Roundabout 1, ROBO; imm 99.2 1.2E-11 4.2E-16 117.6 4.7 125 231-356 79-204 (217)
433 1hzh_H IGG, immunoglobulin hea 99.2 2.1E-10 7E-15 122.6 14.8 177 266-456 6-226 (457)
434 3o3u_N Maltose-binding peripla 99.2 2.9E-11 1E-15 133.4 8.3 100 268-367 374-478 (581)
435 3pl6_D MBP peptide / T-cell re 99.2 6.4E-11 2.2E-15 116.9 9.5 97 260-357 26-137 (268)
436 2xqy_G A13-D6.3 monoclonal ant 99.2 2.3E-10 8E-15 112.6 13.4 93 266-358 12-124 (261)
437 1pd6_A Cardiac MYBP-C;, myosin 99.2 8.4E-11 2.9E-15 98.2 8.6 88 259-356 14-102 (104)
438 3jz7_A MCAR, CAR, coxsackievir 99.2 1.5E-11 5.2E-16 116.3 4.6 115 231-357 94-211 (214)
439 2e6q_A Obscurin-like protein 1 99.2 1.6E-10 5.6E-15 97.4 10.3 89 260-359 8-106 (112)
440 3m8o_H Immunoglobulin A1 heavy 99.1 2.7E-10 9.1E-15 108.9 13.0 170 266-449 6-213 (221)
441 3bn9_D E2 FAB heavy chain; ant 99.1 5.9E-11 2E-15 116.6 8.6 81 266-346 6-103 (257)
442 1hxm_B Gamma-delta T-cell rece 99.1 2.7E-11 9.1E-16 117.9 5.8 84 262-345 3-103 (242)
443 3q5y_A TCR N15 beta; IG, T cel 99.1 8.6E-11 2.9E-15 113.9 9.3 91 262-357 4-113 (240)
444 3liz_H 4C3 monoclonal antibody 99.1 8.1E-11 2.8E-15 115.3 9.1 180 266-458 6-219 (253)
445 2e7b_A Obscurin; IG-like domai 99.1 4.7E-11 1.6E-15 99.4 6.1 88 259-357 7-94 (103)
446 3qib_D 2B4 beta chain; IG doma 99.1 8E-11 2.7E-15 116.4 8.6 114 232-357 7-140 (270)
447 4frw_A Poliovirus receptor-rel 99.1 5.8E-11 2E-15 112.2 7.3 121 231-356 89-209 (218)
448 2cpc_A KIAA0657 protein; immun 99.1 3.8E-10 1.3E-14 95.5 11.6 88 260-358 10-100 (113)
449 2wbj_D OB TCR; transmembrane, 99.1 1.3E-10 4.3E-15 115.7 9.9 86 260-345 24-123 (279)
450 4i0k_A CD276 antigen; immunogl 99.1 2E-10 6.8E-15 109.6 10.9 124 231-359 82-207 (222)
451 4fdw_A Leucine rich hypothetic 99.1 2.8E-10 9.6E-15 119.1 12.8 166 37-211 138-310 (401)
452 1nbq_A JAM, junctional adhesio 99.1 8.4E-12 2.9E-16 117.7 1.1 125 231-356 78-207 (209)
453 1dn0_B IGM-kappa cold agglutin 99.1 6.7E-10 2.3E-14 107.2 14.6 182 266-459 6-227 (232)
454 3un9_A NLR family member X1; l 99.1 2.5E-12 8.6E-17 133.4 -2.8 162 53-214 70-252 (372)
455 3rbg_A Cytotoxic and regulator 99.1 1.2E-10 4.1E-15 100.7 7.8 94 264-359 5-102 (124)
456 1z9m_A GAPA225; nectin-like, I 99.1 1.1E-10 3.8E-15 103.9 7.8 97 263-361 41-141 (145)
457 3r4d_A CEA-related cell adhesi 99.1 4.7E-11 1.6E-15 112.6 5.5 116 231-357 81-199 (208)
458 2dm7_A KIAA1556 protein; beta- 99.1 1.8E-10 6.3E-15 96.7 8.6 88 258-357 6-93 (108)
459 3lcy_A Titin; A-BAND, IG tande 99.1 6.1E-11 2.1E-15 110.5 6.1 119 231-357 73-195 (197)
460 3grw_A Fibroblast growth facto 99.1 7.7E-11 2.6E-15 114.0 7.1 129 231-360 82-220 (241)
461 3ojm_B Fibroblast growth facto 99.1 3.2E-11 1.1E-15 115.6 4.3 132 231-363 86-226 (231)
462 3sgj_C Human FCG3A receptor; r 99.1 5.7E-11 2E-15 112.4 5.8 115 231-364 64-180 (204)
463 2ny1_B T-cell surface glycopro 99.1 5.1E-11 1.8E-15 110.3 5.3 103 231-359 78-180 (184)
464 1c5d_H Monoclonal antibody aga 99.1 3.9E-10 1.3E-14 107.4 11.3 92 266-357 6-116 (215)
465 3d9a_L Light chain of hyhel10 99.1 1.2E-10 4.1E-15 110.5 7.1 125 231-355 81-210 (213)
466 2d3v_A Leukocyte immunoglobuli 99.1 4.4E-11 1.5E-15 112.1 4.0 110 231-346 68-180 (196)
467 1ugn_A LIR1, leukocyte immunog 99.1 1.5E-10 5.3E-15 108.5 7.1 120 231-356 68-196 (198)
468 2fbo_J V1V2;, variable region- 99.1 1.2E-10 4.2E-15 113.1 6.6 126 231-356 100-250 (250)
469 1zvo_C Myeloma immunoglobulin 99.1 2E-10 6.8E-15 124.7 8.8 90 260-349 296-388 (512)
470 3mj8_L Stimulatory hamster ant 99.1 9.4E-11 3.2E-15 111.2 5.3 122 231-353 80-208 (213)
471 3sbw_C Programmed cell death 1 99.1 4.8E-10 1.6E-14 106.8 10.2 121 231-358 90-211 (222)
472 2va4_A NCAM2, N-CAM 2, neural 99.1 3.5E-10 1.2E-14 105.0 8.9 119 231-356 68-191 (192)
473 1f2q_A High affinity immunoglo 99.0 1.8E-10 6.2E-15 105.8 6.8 109 231-358 61-171 (176)
474 4f80_A Butyrophilin subfamily 99.0 1.6E-10 5.6E-15 110.8 6.6 120 231-358 93-213 (226)
475 3tv3_H PGT128 heavy chain, IG 99.0 7.6E-11 2.6E-15 114.5 4.1 80 266-345 6-109 (239)
476 1fnl_A Low affinity immunoglob 99.0 2.4E-10 8.3E-15 104.9 7.1 108 231-357 64-173 (175)
477 1hng_A CD2; T lymphocyte adhes 99.0 8.7E-11 3E-15 108.3 3.6 102 231-357 71-175 (176)
478 3qhz_H Human monoclonal antibo 99.0 8.3E-11 2.9E-15 113.5 3.6 179 266-458 6-228 (232)
479 1lk3_L 9D7 light chain; antige 99.0 3.8E-10 1.3E-14 106.8 7.7 119 231-349 80-203 (210)
480 1mq8_A ICAM-1, intercellular a 99.0 1.4E-10 4.9E-15 115.5 4.6 211 234-467 61-290 (291)
481 3p2t_A Leukocyte immunoglobuli 99.0 2.7E-10 9.3E-15 106.7 6.1 119 231-356 68-194 (196)
482 1q0x_L FAB 9B1, light chain; a 99.0 4.1E-10 1.4E-14 106.6 7.3 122 231-352 83-209 (212)
483 3bp6_B Programmed cell death 1 99.0 1.8E-10 6E-15 108.3 4.3 116 231-359 77-194 (202)
484 4acp_A IG gamma-1 chain C regi 99.0 6.6E-11 2.3E-15 114.9 1.3 89 259-348 21-115 (240)
485 1jbj_A CD3 epsilon and gamma e 99.0 3.5E-10 1.2E-14 105.2 6.2 61 272-348 119-179 (186)
486 2xzc_L FAB A.17 light chain; i 99.0 6.2E-10 2.1E-14 105.8 8.0 125 231-355 82-212 (216)
487 1ypz_E T cell receptor delta, 99.0 2.7E-09 9.2E-14 101.0 12.4 80 263-345 4-94 (207)
488 1zvo_C Myeloma immunoglobulin 99.0 6.7E-10 2.3E-14 120.5 9.1 76 274-352 149-226 (512)
489 3uto_A Twitchin; kinase, muscl 99.0 1.3E-09 4.3E-14 119.5 11.1 92 259-356 481-572 (573)
490 3tv3_L PGT128 light chain, IG 99.0 2.1E-10 7.1E-15 108.6 3.9 123 231-353 78-206 (211)
491 1nfd_E H57 FAB; complex (immun 99.0 8.9E-11 3E-15 111.3 1.2 119 231-350 79-204 (212)
492 3ry4_A Low affinity immunoglob 99.0 5.3E-10 1.8E-14 101.8 6.3 107 231-356 61-169 (170)
493 2gi7_A GPVI protein; IG-like d 99.0 4.1E-10 1.4E-14 104.4 5.6 114 231-356 62-183 (184)
494 3to4_D NKT vbeta2 (mouse varia 99.0 1.2E-09 4E-14 106.9 9.1 83 264-346 5-98 (253)
495 2v5y_A Receptor-type tyrosine- 99.0 1.2E-09 4.2E-14 123.9 10.6 93 260-359 165-261 (731)
496 3nl4_L Antigen binding fragmen 99.0 6.8E-10 2.3E-14 105.2 7.0 112 231-342 81-198 (213)
497 2pet_A Lutheran blood group gl 99.0 4.8E-10 1.6E-14 107.5 6.0 126 231-356 87-229 (231)
498 1vca_A VCAM-D1,2, human vascul 98.9 9.9E-10 3.4E-14 103.6 7.7 123 231-357 64-196 (202)
499 2aty_A Complement receptor chi 98.9 6.4E-10 2.2E-14 115.7 6.8 78 272-350 180-261 (376)
500 3u2s_H PG9 heavy chain; greek 98.9 2.4E-10 8.2E-15 111.6 3.4 80 265-344 4-100 (248)
No 1
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=8.6e-45 Score=389.24 Aligned_cols=332 Identities=23% Similarity=0.459 Sum_probs=252.1
Q ss_pred CCCCCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch
Q psy10487 19 PDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR 98 (610)
Q Consensus 19 ~~~~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~ 98 (610)
.....||..|.|... ...++|.+.+|+++|..++.+++.|+|++|+|+.+....|. ++.+|++|+|++|.|..+.+
T Consensus 30 ~~~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~ 105 (440)
T 3zyj_A 30 GSAQTCPSVCSCSNQ--FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEI 105 (440)
T ss_dssp ---CCCCSSSEECTT--SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECG
T ss_pred cccccCCCCCEeCCC--CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccCh
Confidence 344589999999854 36899999999999999999999999999999999888887 68888888888888888887
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCc--------------------------------
Q psy10487 99 DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA-------------------------------- 146 (610)
Q Consensus 99 ~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-------------------------------- 146 (610)
.+|.++++|++|+|++|+|..+++..|.++++|++|+|++|.++.+..
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 788888888888888888777776666666666666666665554432
Q ss_pred ---------------------------------------CcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487 147 ---------------------------------------GQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN 187 (610)
Q Consensus 147 ---------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 187 (610)
..|.++++|+.|+|++|+|+.+.+..|..+++|+.|+|++|
T Consensus 186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred ccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 22333333444444444444444445556677778888888
Q ss_pred cccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccC--CCCCCCCCCCCccCCCcccccccccccCC-Ccee
Q psy10487 188 RLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL--YSHPLSCTEPGMLQTKHWDDVKAQEFACP-PNVT 264 (610)
Q Consensus 188 ~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l--~~~~~~C~a~~~l~g~~~~~v~~~~~~c~-P~i~ 264 (610)
+++.++...|..+++|+.|++++|+|.|||.+.|+..|+..... ......|..|..+.|+.+.++....+.|. |.+.
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P~i~ 345 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIV 345 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCCCEE
T ss_pred CCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCCccc
Confidence 88888888888899999999999999999999999999986532 23457899999999999999999999995 7777
Q ss_pred eeecceEeecCceEEEEEEEEecCCCeEEEEeCCEE-eccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487 265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQV-LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343 (610)
Q Consensus 265 ~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 343 (610)
..+....+.+|++++|.|.+ +.|.|.+.|++++.. +......... .....++|+|.+++.+|+|.|+|+|.|
T Consensus 346 ~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~N 418 (440)
T 3zyj_A 346 EPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRI------AVLSDGTLNFTNVTVQDTGMYTCMVSN 418 (440)
T ss_dssp ECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSE------EECTTCCEEESSCCSTTCEEEEEEEEC
T ss_pred ccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceE------EEccCCeEEEccCChhhCEEEEEEEEc
Confidence 78889999999999999999 679999999995543 3322211111 112235899999999999999999999
Q ss_pred CCcceeEEEEEEcCcccc
Q psy10487 344 IRGNASGEISLDLPEINL 361 (610)
Q Consensus 344 ~~G~~~~~~~L~V~~~~~ 361 (610)
..|.+++++.+.|.+.+.
T Consensus 419 ~~G~~~~~~~~~v~~~~~ 436 (440)
T 3zyj_A 419 SVGNTTASATLNVTGTHH 436 (440)
T ss_dssp SSCEEEEEEEEEEC----
T ss_pred CCCcEEEEEEEEEecccc
Confidence 999999999999965443
No 2
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=1.8e-44 Score=388.08 Aligned_cols=332 Identities=25% Similarity=0.438 Sum_probs=255.2
Q ss_pred CCCCCCCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCccc
Q psy10487 17 GSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREV 96 (610)
Q Consensus 17 ~~~~~~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i 96 (610)
+......||..|.|.+. ...++|.+.+++++|..++.+++.|+|++|+|+.+.+..|. ++++|++|+|++|.|..+
T Consensus 39 ~~~~~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~ 114 (452)
T 3zyi_A 39 ASAGPQNCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQI 114 (452)
T ss_dssp -----CCCCTTSEECSS--SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEE
T ss_pred ccCCcCCCCCCCEECCC--CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCc
Confidence 33445699999999864 35899999999999999999999999999999999888887 788888888888888888
Q ss_pred chhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCc----------------------------
Q psy10487 97 HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ---------------------------- 148 (610)
Q Consensus 97 ~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~---------------------------- 148 (610)
.+.+|.++++|++|+|++|+|..+++..|.++++|++|+|++|.++.+....
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence 8888888888888888888888777777777777777777776665544322
Q ss_pred -------------------------------------------CCCCCCccEEEccCccccccCHHHhhcCccccccccc
Q psy10487 149 -------------------------------------------FPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN 185 (610)
Q Consensus 149 -------------------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 185 (610)
|.++++|+.|+|++|+|..+.+..|..+++|+.|+|+
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp CTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 2223333333333334444444445566777777788
Q ss_pred cccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccC--CCCCCCCCCCCccCCCcccccccccccCC-Cc
Q psy10487 186 GNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL--YSHPLSCTEPGMLQTKHWDDVKAQEFACP-PN 262 (610)
Q Consensus 186 ~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l--~~~~~~C~a~~~l~g~~~~~v~~~~~~c~-P~ 262 (610)
+|+|+.++...|..+++|+.|++++|+|.|||.+.|+..|+..... ......|..|..+.|..+.++....+.|. |.
T Consensus 275 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P~ 354 (452)
T 3zyi_A 275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPF 354 (452)
T ss_dssp SSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCCC
T ss_pred CCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCcc
Confidence 8888888878888889999999999999999999999999986432 23457899999999999999999999995 77
Q ss_pred eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCE-EeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ-VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA 341 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~-~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 341 (610)
+...+....+.+|++++|.|.+. |.|.|.|++++. .+......... .....++|.|.+++.+|+|.|+|+|
T Consensus 355 i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~------~~~~~g~L~i~~v~~~D~G~Y~C~a 426 (452)
T 3zyi_A 355 IMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRI------SVLNDGTLNFSHVLLSDTGVYTCMV 426 (452)
T ss_dssp CSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSC------EECTTSCEECSSCCTTCCEEEEEEE
T ss_pred cccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCE------EECCCCeEEEeecCHHHCEEEEEEE
Confidence 77778889999999999999998 999999999544 44322111000 1122358999999999999999999
Q ss_pred ecCCcceeEEEEEEcCccc
Q psy10487 342 ENIRGNASGEISLDLPEIN 360 (610)
Q Consensus 342 ~N~~G~~~~~~~L~V~~~~ 360 (610)
.|.+|.+++++.|.|.+..
T Consensus 427 ~N~~G~~~~~~~l~v~~~~ 445 (452)
T 3zyi_A 427 TNVAGNSNASAYLNVSTAG 445 (452)
T ss_dssp ECSSCEEEEEEEEEC----
T ss_pred EcCCCcEEEEEEEEEEccc
Confidence 9999999999999996543
No 3
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=100.00 E-value=8.5e-43 Score=363.67 Aligned_cols=320 Identities=25% Similarity=0.379 Sum_probs=271.5
Q ss_pred CCCCCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch
Q psy10487 19 PDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR 98 (610)
Q Consensus 19 ~~~~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~ 98 (610)
.....||..|.|.+ ..++|.+++|+++|..++..++.|+|++|+|+.++...|.. ++.+|++|+|++|.|..+.+
T Consensus 7 ~~~~~Cp~~C~C~~----~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~ 81 (361)
T 2xot_A 7 RSVVSCPANCLCAS----NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISS 81 (361)
T ss_dssp CCCTTCCTTCEEET----TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEECT
T ss_pred CcCCCCCCCCEECC----CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhh-cccccCEEECCCCcCCccCh
Confidence 45568999999984 58999999999999999999999999999999999887741 58899999999999999999
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHh---hc
Q psy10487 99 DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL---IH 175 (610)
Q Consensus 99 ~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~ 175 (610)
.+|.++++|++|+|++|+|..+++..|.++.+|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.++...| ..
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988777 56
Q ss_pred CccccccccccccccccCcccccCCCc--ccEEecCCCcccccCCchhh-HHHHhhcc----CCCCCCCCCCCCccCCCc
Q psy10487 176 LTALESLNLNGNRLKHLSESVFFPTPN--LKTLSLDGNPWCCDCHLRSF-RNWLLKSK----LYSHPLSCTEPGMLQTKH 248 (610)
Q Consensus 176 l~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~l~l~~N~~~c~c~l~~~-~~~l~~~~----l~~~~~~C~a~~~l~g~~ 248 (610)
+++|+.|+|++|+|+.++...+..++. ++.|++.+|+|.|+|.+.|+ ..|..... .....+.|..|..+.+
T Consensus 162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~-- 239 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHN-- 239 (361)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCCEE--
T ss_pred CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHHcC--
Confidence 899999999999999999877877776 47899999999999999986 56765432 2346789998865442
Q ss_pred ccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEe
Q psy10487 249 WDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFN 328 (610)
Q Consensus 249 ~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~ 328 (610)
+ .....+.|.+ ..+..+.+.+|++++|.|.+.| |.|.|.|++++..+...... ..+... ..+.|+|.+
T Consensus 240 ~--~~~~~~~C~~---~~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~-----~~r~~~-~~~~L~I~~ 307 (361)
T 2xot_A 240 I--FSLDFFNCSE---YKESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGS-----NGSVSV-RNGDLFFKK 307 (361)
T ss_dssp G--GGCCCTTCCS---CCCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCS-----SSSEEE-ETTEEEESS
T ss_pred c--cccccccCCC---ccccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeeccc-----CCceEe-ecCeEEEee
Confidence 2 2223678887 3466788999999999999999 99999999977654332210 001111 345899999
Q ss_pred cCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487 329 VTDLDAGEYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
++.+|+|.|+|+|.|..|.++..+.|.|.
T Consensus 308 v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 336 (361)
T 2xot_A 308 VQVEDGGVYTCYAMGETFNETLSVELKVY 336 (361)
T ss_dssp CCTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCcccCEEEEEEEecCCCccEEEEEEEEE
Confidence 99999999999999999999999999983
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=358.02 Aligned_cols=324 Identities=29% Similarity=0.494 Sum_probs=234.3
Q ss_pred CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102 (610)
Q Consensus 23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~ 102 (610)
.||..|.|... .+.++|.+.+++++|..++.+++.|+|++|+|+.+.+..|. ++++|++|+|++|.|..+.+.+|.
T Consensus 2 ~Cp~~C~C~~~--~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~ 77 (477)
T 2id5_A 2 GCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFN 77 (477)
T ss_dssp CCSTTCEEETT--TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccCCCeECCC--CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhhh
Confidence 69999999753 46899999999999999999999999999999999888887 678888888888888887777777
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCcccccc------------------------CcCcCCCCCCccEE
Q psy10487 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL------------------------RAGQFPKLPYLKTI 158 (610)
Q Consensus 103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l------------------------~~~~~~~l~~L~~L 158 (610)
++++|++|+|++|+|..++...|.++++|++|+|++|.++.+ .+..|..+++|+.|
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 777777777777777776665565555555555555544433 22233333333333
Q ss_pred EccCccccccCH--------------------------------------------------------------------
Q psy10487 159 ELQHCQIHSVHK-------------------------------------------------------------------- 170 (610)
Q Consensus 159 ~L~~n~l~~~~~-------------------------------------------------------------------- 170 (610)
+|++|+++.+.+
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 333332222211
Q ss_pred ----------------------------------------------------HHhhcCccccccccccccccccCccccc
Q psy10487 171 ----------------------------------------------------DALIHLTALESLNLNGNRLKHLSESVFF 198 (610)
Q Consensus 171 ----------------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 198 (610)
..|..+++|+.|+|++|+++.++...|.
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence 1122223333444444444444455566
Q ss_pred CCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccc----cccCC-Cceee-eecceEe
Q psy10487 199 PTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQ----EFACP-PNVTI-KESMVIR 272 (610)
Q Consensus 199 ~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~----~~~c~-P~i~~-~~~~~~v 272 (610)
.+++|+.|++++|+|.|+|.+.|+..|.....+....+.|..|..+.|..+.++... .+.|. |.+.. .+..+.+
T Consensus 318 ~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~i~~~~~~~~~v 397 (477)
T 2id5_A 318 SVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFV 397 (477)
T ss_dssp CGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEEESCCSCEEEEE
T ss_pred CCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEeccccccccccccEEE
Confidence 677889999999999999999998887666666777899999999999888776543 46775 44433 3578889
Q ss_pred ecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEE
Q psy10487 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352 (610)
Q Consensus 273 ~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 352 (610)
.+|++++|.|.+.|.|.|.|.|++++..+.......... ....++|+|.+++.+|+|.|+|+|.|..|.+++++
T Consensus 398 ~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~ 471 (477)
T 2id5_A 398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT------VFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPA 471 (477)
T ss_dssp ETTCCEEECCCEEEESCCEEEEECTTSCBC-------CE------ECTTSCEEESSCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred eCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEE------eCCCCEEEEeeCChHHCEEEEEEEEeCCCcEEEEE
Confidence 999999999999999999999999987765322111111 11224899999999999999999999999999999
Q ss_pred EEEc
Q psy10487 353 SLDL 356 (610)
Q Consensus 353 ~L~V 356 (610)
.|.|
T Consensus 472 ~l~V 475 (477)
T 2id5_A 472 HLHV 475 (477)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9887
No 5
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=100.00 E-value=3.3e-37 Score=319.78 Aligned_cols=317 Identities=21% Similarity=0.252 Sum_probs=228.4
Q ss_pred EEEccCC-CCCCCCcccccCCCCCcEEEeeC-ccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc
Q psy10487 109 EVDLSDN-QIAWLHQDTFLGNDRLKVLYLNG-NPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG 186 (610)
Q Consensus 109 ~LdLs~n-~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 186 (610)
.++++++ +|..++. |..+.+|+.|+|++ |.|+.+.+..|.+|++|+.|+|++|+|+.+.+..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566665 6766654 66667777777775 777777766777777777777777777777777777788888888888
Q ss_pred ccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhcc--CCCCCCCCCCCCccCCCcccccccccccC-CCce
Q psy10487 187 NRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSK--LYSHPLSCTEPGMLQTKHWDDVKAQEFAC-PPNV 263 (610)
Q Consensus 187 n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~--l~~~~~~C~a~~~l~g~~~~~v~~~~~~c-~P~i 263 (610)
|+|+.++...|..+. |+.|++.+|+|.|+|.+.||..|..... ++.+.|+|.+++.+. ++. .+.| +|.+
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~-----~l~--~~~c~~P~i 161 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA-----HMP--NASCGVPTL 161 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSS-----CCC--CTTCCCCEE
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHh-----cCC--cccCCCCce
Confidence 888888777776665 9999999999999999999999998654 456899999988333 222 2457 6888
Q ss_pred eeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe-EEEEEee
Q psy10487 264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG-EYTCYAE 342 (610)
Q Consensus 264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~ 342 (610)
...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....... .....+.|.|.+++.+|+| .|+|.|.
T Consensus 162 ~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~--------~~~~~~~L~i~~v~~~D~G~~Y~C~a~ 233 (347)
T 2ifg_A 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS--------GGLPSLGLTLANVTSDLNRKNVTCWAE 233 (347)
T ss_dssp EEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC--------CCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred eccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc--------eecccceEEEeeCChHHCCCeEEEEEE
Confidence 888899999999999999999999999999999887644322111 1134568999999999999 9999999
Q ss_pred cCCcceeEEEEEEcCcccccccc-ccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccc--cc---
Q psy10487 343 NIRGNASGEISLDLPEINLATTL-SKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQ--SV--- 416 (610)
Q Consensus 343 N~~G~~~~~~~L~V~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--- 416 (610)
|..|..+..+.|.|.. +|.+ ...+. .+.. ..+.|.....+.+...|.+.+..-. ..
T Consensus 234 n~~g~~~~~~~l~V~~---~P~i~~~~~~-----~g~~----------v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~ 295 (347)
T 2ifg_A 234 NDVGRAEVSVQVNVSF---PASVQLHTAV-----EMHH----------WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFT 295 (347)
T ss_dssp ETTEECCEEECCCCBE---EEEEEECCCE-----ESSS----------EEEEEEEEEESCCEEEEEETTEECCCCSSEEE
T ss_pred cCCCCEEEEEEEEEcC---CCeeeeccCc-----cCce----------EEEEEEeeecCCCcEEEEeCCEECCCCcceee
Confidence 9999998888888743 2232 11110 0000 1122333333333333433221100 00
Q ss_pred -------cccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 417 -------SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 417 -------~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
......+.|.|.+++.+|+|.|+|+|.|..|.++.++.+.|.++|
T Consensus 296 ~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 296 EFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp EECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred EEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 001235579999999999999999999999999999999888643
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.97 E-value=6.3e-30 Score=247.05 Aligned_cols=210 Identities=30% Similarity=0.547 Sum_probs=169.0
Q ss_pred CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhh
Q psy10487 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101 (610)
Q Consensus 22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f 101 (610)
..||..|.|.+ ..++|.+++++++|..++.+++.|+|++|.|+.++...|. ++.+|++|+|++|.|..+.+.+|
T Consensus 3 ~~CP~~C~C~~----~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~~ 76 (220)
T 2v9t_B 3 LHCPAACTCSN----NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDAF 76 (220)
T ss_dssp CCSCTTSEEET----TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTTTT
T ss_pred CCCCCCCEECC----CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHHh
Confidence 47999999986 5899999999999999999999999999999888877776 67788888888888888777778
Q ss_pred cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccc
Q psy10487 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES 181 (610)
Q Consensus 102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (610)
.++++|++|+|++|+|+.+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|+
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~----------------- 139 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK----------------- 139 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----------------
T ss_pred hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-----------------
Confidence 888888888888877777776666666666666666666666655555555555555555554
Q ss_pred cccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCCC
Q psy10487 182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPP 261 (610)
Q Consensus 182 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P 261 (610)
|+.++...|..+++|+.|++++|+|.|+|.+.|+..|+.........+.|..|..++|+.+.++...++.|.-
T Consensus 140 -------l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~c~~ 212 (220)
T 2v9t_B 140 -------LQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSA 212 (220)
T ss_dssp -------CSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSCGGGCCC--
T ss_pred -------CCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCCcCCchHHcCCchhhCCHHHCcCcc
Confidence 4444455566678889999999999999999999999998887778899999999999999999999998863
No 7
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.96 E-value=5.7e-30 Score=265.27 Aligned_cols=309 Identities=22% Similarity=0.299 Sum_probs=200.1
Q ss_pred CCCCC-eeCccCCCcEEEcCCC-CCCccCcccCC--CccEEEeec-CCCCCCChhhhcccCCCCccEEEcccCCCcccch
Q psy10487 24 CPDTC-RCKWTLGKKSALCKDA-NFTALPSTLDS--DIQVLDLNN-NKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR 98 (610)
Q Consensus 24 Cp~~C-~C~~~~~~~~~~C~~~-~l~~lP~~l~~--~L~~L~L~~-n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~ 98 (610)
||..| .|.+ ..++|.++ +|+.||. ++. +|++|+|++ |.|+.+++..|. +|.+|+.|+|++|+|+.+.+
T Consensus 1 cp~~c~~C~~----~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 1 CPDACCPHGS----SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp CCSSSCCSSS----SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECT
T ss_pred CCCcCccccC----CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCH
Confidence 99999 9985 47899998 9999998 865 599999996 999999999998 79999999999999999999
Q ss_pred hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCc-CcCCCCCCccEEEccCccccccCHHHhhcCc
Q psy10487 99 DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177 (610)
Q Consensus 99 ~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (610)
.+|.++++|++|+|++|+|..+++..|..+. |+.|+|.+|.+..... ..|..+.......+..+.++...+.
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~------ 146 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG------ 146 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS------
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh------
Confidence 9999999999999999999999988888776 9999999998875432 0011111111111222333333222
Q ss_pred cccccccccccccccCcccccCCCcccEEecCCCc--cccc------CCchhhHHH-------------------H-hhc
Q psy10487 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP--WCCD------CHLRSFRNW-------------------L-LKS 229 (610)
Q Consensus 178 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~--~~c~------c~l~~~~~~-------------------l-~~~ 229 (610)
.+..+.+..+.. +.+........ . ..|.. +.|. -.+.|+..- + ...
T Consensus 147 ~l~~l~~~~c~~----P~i~~~~~~~~-v-~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 220 (347)
T 2ifg_A 147 PLAHMPNASCGV----PTLKVQVPNAS-V-DVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVT 220 (347)
T ss_dssp CSSCCCCTTCCC----CEEEEECCSSC-C-BTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCC
T ss_pred HHhcCCcccCCC----CceeccCCceE-E-eCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCC
Confidence 111111111100 00000000000 0 00000 1111 011111000 0 012
Q ss_pred cCCCC-CCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487 230 KLYSH-PLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 230 ~l~~~-~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~ 308 (610)
..+.+ .|+|.+.+..+.. ...+... +..+|.+ ....+.+|+.++|.|.+.|.|.|.|.|+++|..+.......
T Consensus 221 ~~D~G~~Y~C~a~n~~g~~-~~~~~l~-V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~ 294 (347)
T 2ifg_A 221 SDLNRKNVTCWAENDVGRA-EVSVQVN-VSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIF 294 (347)
T ss_dssp STTTTCCEEECCEETTEEC-CEEECCC-CBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEE
T ss_pred hHHCCCeEEEEEEcCCCCE-EEEEEEE-EcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCccee
Confidence 24667 8999987765432 2222222 2234544 22335679999999999999999999999999988654432
Q ss_pred eeecc-CCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487 309 LEEEE-GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 309 ~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 358 (610)
..... ........+.|+|.+++.+|+|.|+|+|.|.+|.+++++.|.|.+
T Consensus 295 ~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 345 (347)
T 2ifg_A 295 TEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 345 (347)
T ss_dssp EEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred eEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence 22111 111123467899999999999999999999999999999998853
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.96 E-value=1.1e-28 Score=243.65 Aligned_cols=203 Identities=30% Similarity=0.536 Sum_probs=191.2
Q ss_pred CCCCC--CeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhh
Q psy10487 23 DCPDT--CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100 (610)
Q Consensus 23 ~Cp~~--C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~ 100 (610)
+||.. |.|... ...++|.+++++++|..++.+++.|+|++|.|+.+.+..|. ++++|++|+|++|.|..+.+..
T Consensus 3 ~Cp~~~gC~C~~~--~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 3 TCETVTGCTCNEG--KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp -CHHHHSSEEEGG--GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTT
T ss_pred cCCCCCceEcCCC--CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHhH
Confidence 58765 999643 46899999999999999999999999999999999998888 7999999999999999999999
Q ss_pred hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccc
Q psy10487 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE 180 (610)
Q Consensus 101 f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (610)
|..+++|++|+|++|+|..+++..|..+++|++|+|++|.++.+.+..|..+++|+.|+|++|+|+.+.+..|..+++|+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999888899999999
Q ss_pred ccccccccccccCcccccCCCcccEEecCCCccccc-CCchhhHHHHhhc
Q psy10487 181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCD-CHLRSFRNWLLKS 229 (610)
Q Consensus 181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~-c~l~~~~~~l~~~ 229 (610)
.|+|++|+++.++...|..+++|+.|++.+|+|.|+ |.+.++..|+...
T Consensus 159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 999999999999998899999999999999999999 9999999999854
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=236.96 Aligned_cols=211 Identities=28% Similarity=0.516 Sum_probs=171.6
Q ss_pred CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCCh-hhhcccCCCCccEEEcccCCCcccchhh
Q psy10487 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTK-EAFKSIGLLNLQRIYLKNSGIREVHRDT 100 (610)
Q Consensus 22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~-~~~~~~~l~~L~~L~L~~n~l~~i~~~~ 100 (610)
..||..|.|.| ..++|.+++++++|..++..+++|+|++|.|+.+.+ ..|. ++++|++|+|++|.|+.+.+.+
T Consensus 3 ~~CP~~C~C~~----~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~~ 76 (220)
T 2v70_A 3 LACPEKCRCEG----TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEGA 76 (220)
T ss_dssp -CCCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCCCCEECC----CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHHH
Confidence 47999999997 489999999999999999999999999999998853 4566 6788888888888888888778
Q ss_pred hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccc
Q psy10487 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE 180 (610)
Q Consensus 101 f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (610)
|.++++|++|+|++|+|..+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|+|+.+
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------ 144 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV------------ 144 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB------------
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE------------
Confidence 88888888888888888888777777777777777777777776666666666666666655555544
Q ss_pred ccccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCC
Q psy10487 181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACP 260 (610)
Q Consensus 181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~ 260 (610)
.+..|..+++|+.|++++|+|.|+|.+.|+..|+.......+...|..|..++|..+.++...++.|.
T Consensus 145 ------------~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~~~ 212 (220)
T 2v70_A 145 ------------APGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCD 212 (220)
T ss_dssp ------------CTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGGGTTEEGGGSCGGGCCCC
T ss_pred ------------CHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChHHCCCChhhCCHHHcccc
Confidence 44455567788899999999999999999999999877777788999999999999999999988876
Q ss_pred Cc
Q psy10487 261 PN 262 (610)
Q Consensus 261 P~ 262 (610)
..
T Consensus 213 ~~ 214 (220)
T 2v70_A 213 DA 214 (220)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.1e-28 Score=246.25 Aligned_cols=236 Identities=29% Similarity=0.501 Sum_probs=169.2
Q ss_pred CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhccc----------------------CC
Q psy10487 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI----------------------GL 80 (610)
Q Consensus 23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~----------------------~l 80 (610)
+||..|.|... ++..++|.+.+++.+|..++.++++|+|++|.|+.++...|..+ ++
T Consensus 1 ~CP~~C~C~~~-~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 1 PCPGACVCYNE-PKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp CCCTTCEEECS-SSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CcCCCceECCC-CCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 59999999754 34789999999999998888888888888888877776555410 34
Q ss_pred CCccEEEcccCC-CcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCC---------
Q psy10487 81 LNLQRIYLKNSG-IREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP--------- 150 (610)
Q Consensus 81 ~~L~~L~L~~n~-l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~--------- 150 (610)
++|++|+|++|. +..+.+..|..+++|++|+|++|++..+.+..|.++++|++|+|++|.++.+....|.
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 445555555554 5555455555556666666666666665555555555566665555555555444444
Q ss_pred ---------------CCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487 151 ---------------KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 151 ---------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
.+++|+.|+|++|++..+.+..|..+++|+.|++++|.++.++...+..+++|+.|++++|+|.|
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 44455555555555555545555566667777777777777766677888999999999999999
Q ss_pred cCCchhhHHHHhhccCCCCCCCCCCCCccCCCccccccccccc-C
Q psy10487 216 DCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFA-C 259 (610)
Q Consensus 216 ~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~-c 259 (610)
+|.+.|+..|+.........+.|..|..+.|..+.++...++. |
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 240 DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp SGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 9999999999998888888999999999999999888887775 5
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-25 Score=223.56 Aligned_cols=223 Identities=31% Similarity=0.508 Sum_probs=162.7
Q ss_pred CCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCC
Q psy10487 26 DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105 (610)
Q Consensus 26 ~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~ 105 (610)
..|.|... ...++|.+++++++|..++.+++.|+|++|.|+.++...|. ++++|++|+|++|.|..+.+..|.+++
T Consensus 10 ~~C~c~~~--~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l~ 85 (270)
T 2o6q_A 10 GVCSCNNN--KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKELK 85 (270)
T ss_dssp CSBEEETT--TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred CCCEeCCC--CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCCC
Confidence 57888643 47899999999999999999999999999999999887776 677777777777777776666666666
Q ss_pred CCcEEEccCCCCCCCCcccccC------------------------CCCCcEEEeeCccccccCcCcCCCCCCccEEEcc
Q psy10487 106 ILVEVDLSDNQIAWLHQDTFLG------------------------NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161 (610)
Q Consensus 106 ~L~~LdLs~n~l~~l~~~~f~~------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~ 161 (610)
+|++|+|++|++..+++..|.+ +++|++|+|++|.++.+....|..+++|+.|+|+
T Consensus 86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 6666666666666555544444 4455555555555555555556666677777777
Q ss_pred CccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhccC----CCCCC
Q psy10487 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSKL----YSHPL 236 (610)
Q Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~l----~~~~~ 236 (610)
+|+|..+.+..|..+++|+.|+|++|+++.++...|..+++|+.|++++|+|.|+|. +.++..|+..... .....
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~ 245 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTA 245 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCcccc
Confidence 777777766667777888888888888888888778888999999999999999997 7888889875432 23446
Q ss_pred CCCCCCccCCCccccccccc
Q psy10487 237 SCTEPGMLQTKHWDDVKAQE 256 (610)
Q Consensus 237 ~C~a~~~l~g~~~~~v~~~~ 256 (610)
.|..+ ++.+.++...+
T Consensus 246 ~C~~~----~~~~~~~~~~~ 261 (270)
T 2o6q_A 246 GCEKG----GKAVLEITEKD 261 (270)
T ss_dssp BBSSS----CSBGGGCCTTT
T ss_pred ccCCC----CeEeEEecchh
Confidence 77542 44455555444
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-25 Score=228.83 Aligned_cols=223 Identities=23% Similarity=0.420 Sum_probs=159.8
Q ss_pred CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCccc-------
Q psy10487 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREV------- 96 (610)
Q Consensus 24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i------- 96 (610)
||..|.|.| ..++|.+.+++++|..++.++++|+|++|.|+.++...|. ++++|++|+|++|.+..+
T Consensus 1 CP~~C~C~~----~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~ 74 (306)
T 2z66_A 1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSD 74 (306)
T ss_dssp CCTTCEEET----TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred CcCCCeeCC----CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCcccCccccc
Confidence 999999997 4899999999999999999999999999999999887776 566666666666554422
Q ss_pred ------------------------------------------ch-hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487 97 ------------------------------------------HR-DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV 133 (610)
Q Consensus 97 ------------------------------------------~~-~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~ 133 (610)
.. ..|..+++|++|+|++|++..+.+..|.++++|++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 11 23455555666666655554444444444445555
Q ss_pred EEeeC-------------------------ccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccc
Q psy10487 134 LYLNG-------------------------NPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNR 188 (610)
Q Consensus 134 L~Ls~-------------------------N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 188 (610)
|+|++ |.++.+.+..|..+++|+.|+|++|+++.+.+..|..+++|+.|++++|.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 55554 44444444555566666666666666666655556666777777777777
Q ss_pred ccccCcccccCC-CcccEEecCCCcccccCCchhhHHHHhhcc---CCCCCCCCCCCCccCCCccccc
Q psy10487 189 LKHLSESVFFPT-PNLKTLSLDGNPWCCDCHLRSFRNWLLKSK---LYSHPLSCTEPGMLQTKHWDDV 252 (610)
Q Consensus 189 l~~~~~~~~~~~-~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~---l~~~~~~C~a~~~l~g~~~~~v 252 (610)
+.+..+..+..+ ++|+.|++++|+|.|+|.+.||..|+.... .+...+.|..|..++|..+..+
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~ 302 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 302 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGC
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeee
Confidence 777666667777 489999999999999999999999998643 3556789999998888776654
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.6e-25 Score=224.03 Aligned_cols=201 Identities=26% Similarity=0.439 Sum_probs=163.1
Q ss_pred CCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch-------
Q psy10487 26 DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR------- 98 (610)
Q Consensus 26 ~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~------- 98 (610)
+.|.|..-...+.++|.+++++++|..++.+++.|+|++|.|+.+.+..|. ++++|++|+|++|.|..+..
T Consensus 2 p~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l~~L 79 (290)
T 1p9a_G 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVDGTLPVL 79 (290)
T ss_dssp CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECCSCCTTC
T ss_pred CcccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCCCCCCcC
Confidence 457776555568999999999999999999999999999999999888776 56666666666666554432
Q ss_pred --------------hhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCcc
Q psy10487 99 --------------DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164 (610)
Q Consensus 99 --------------~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~ 164 (610)
..|..+++|++|+|++|+|+.+++..|.++++|++|+|++|.++.+++..|..+++|+.|+|++|+
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 345667777888888888887777778888888888888888888887778888888888888888
Q ss_pred ccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhc
Q psy10487 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKS 229 (610)
Q Consensus 165 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~ 229 (610)
|+.+++..|..+++|+.|+|++|+++.++...+ .+..|+.+++.+|+|.|+|.+.||..|+...
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence 888877777788888888888888888877655 4568999999999999999999999999854
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.93 E-value=4.4e-25 Score=208.38 Aligned_cols=183 Identities=23% Similarity=0.473 Sum_probs=132.7
Q ss_pred CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102 (610)
Q Consensus 23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~ 102 (610)
.||..|.|.+ ..++|.+++++++|..++.++++|+|++|.|+.++ ..|. ++.+|++|+|++|.|+.+.+.+|.
T Consensus 3 ~CP~~C~C~~----~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f~ 75 (193)
T 2wfh_A 3 RCPTECTCLD----TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSFS 75 (193)
T ss_dssp -CCTTCEEET----TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEeCC----CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHcc
Confidence 6999999985 58999999999999988889999999988888776 4454 455666666666666655555555
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccc
Q psy10487 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL 182 (610)
Q Consensus 103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 182 (610)
++.+|++|+|++|+|+.+++. .|..+++|+.|+|++|+|+.+.+
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~------------------------~f~~l~~L~~L~L~~N~l~~~~~------------ 119 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPR------------------------TFDGLKSLRLLSLHGNDISVVPE------------ 119 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTT------------------------TTTTCTTCCEEECCSSCCCBCCT------------
T ss_pred CCCCCCEEECCCCccCEeCHH------------------------HhCCCCCCCEEECCCCCCCeeCh------------
Confidence 555555555555555554444 44444455555555544443322
Q ss_pred ccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCC
Q psy10487 183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACP 260 (610)
Q Consensus 183 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~ 260 (610)
..|..+++|+.|++++|+|.|+|.+.||..|+.......+.+.|..|..+.|+.+.++....+.|.
T Consensus 120 ------------~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~ 185 (193)
T 2wfh_A 120 ------------GAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCA 185 (193)
T ss_dssp ------------TTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGCCC-
T ss_pred ------------hhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHeeeh
Confidence 233445677888999999999999999999998877677778999999999999999988877654
No 15
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.92 E-value=1.4e-24 Score=204.89 Aligned_cols=186 Identities=28% Similarity=0.547 Sum_probs=136.2
Q ss_pred CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChh-hhcccCCCCccEEEcccCCCcccchhhh
Q psy10487 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKE-AFKSIGLLNLQRIYLKNSGIREVHRDTF 101 (610)
Q Consensus 23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~-~~~~~~l~~L~~L~L~~n~l~~i~~~~f 101 (610)
.||..|.|.| +.++|.+++++++|..++.++++|+|++|.|+.++.. .|. ++++|++|+|++|.|+.+.+.
T Consensus 1 ~CP~~C~C~~----~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~-- 72 (192)
T 1w8a_A 1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPN-- 72 (192)
T ss_dssp CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTT--
T ss_pred CcCCCCEECC----CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHh--
Confidence 5999999997 5899999999999998888888898888888777653 343 344555555555555544444
Q ss_pred cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccc
Q psy10487 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES 181 (610)
Q Consensus 102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (610)
.|.++++|++|+|++|.++.+.+..|.++++|+.|+|++|+|+.+.+
T Consensus 73 ----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------- 119 (192)
T 1w8a_A 73 ----------------------AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP----------- 119 (192)
T ss_dssp ----------------------TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-----------
T ss_pred ----------------------HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-----------
Confidence 44445555555555555555555455555556666666555554432
Q ss_pred cccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhccCCCCCCCCCCCCccCCCcccccccccccCCC
Q psy10487 182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPP 261 (610)
Q Consensus 182 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P 261 (610)
..|..+++|+.|++++|+|.|+|.+.|+..|+....+......|..|..+.+..+.++...++.|..
T Consensus 120 -------------~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 120 -------------GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp -------------TSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCCC
T ss_pred -------------HHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhcCcCC
Confidence 2334456778888999999999999999999998887788899999999999999999999999975
Q ss_pred c
Q psy10487 262 N 262 (610)
Q Consensus 262 ~ 262 (610)
.
T Consensus 187 ~ 187 (192)
T 1w8a_A 187 E 187 (192)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=9.9e-24 Score=210.99 Aligned_cols=212 Identities=25% Similarity=0.407 Sum_probs=155.9
Q ss_pred CCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCC
Q psy10487 27 TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI 106 (610)
Q Consensus 27 ~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~ 106 (610)
.|.|.+. ...++|.+.+++++|..++.++++|+|++|.|+.++...|. ++++|++|+|++|.+..+.+.+|.++++
T Consensus 2 ~C~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (276)
T 2z62_A 2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSH 77 (276)
T ss_dssp CSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred CceeccC--CceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCcC
Confidence 5888764 46899999999999999999999999999999999887787 6888899999888888888878888888
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC-HHHhhcCcc-------
Q psy10487 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTA------- 178 (610)
Q Consensus 107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~------- 178 (610)
|++|+|++|++..+.+..|.++++|++|+|++|.+..+....|..+++|+.|+|++|++..+. +..|..+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 888888888888777666666666666666666666555444555555555555555444422 233333333
Q ss_pred --------------------------------------------ccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487 179 --------------------------------------------LESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 179 --------------------------------------------L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~ 214 (610)
|+.|++++|+++.++...|..+++|+.|++++|+|.
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 444555555555555566777889999999999999
Q ss_pred ccCC-chhhHHHHhhcc-CCCCCCCCCCCC
Q psy10487 215 CDCH-LRSFRNWLLKSK-LYSHPLSCTEPG 242 (610)
Q Consensus 215 c~c~-l~~~~~~l~~~~-l~~~~~~C~a~~ 242 (610)
|+|. +.++..|..... ...+...|..+.
T Consensus 238 c~c~~l~~l~~~~~~~~~~~~~~~~C~~~~ 267 (276)
T 2z62_A 238 CSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 267 (276)
T ss_dssp CCTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred ccCCchHHHHHHHHhcccccCCCceeeCCC
Confidence 9996 788889988644 344567887753
No 17
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.8e-23 Score=198.52 Aligned_cols=174 Identities=31% Similarity=0.565 Sum_probs=131.3
Q ss_pred CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY 103 (610)
Q Consensus 24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~ 103 (610)
||..|.|.| ..++|.+.+++++|..++.++++|+|++|.|+.++...|. ++.+|++|+|++|++..+.+..|..
T Consensus 1 Cp~~C~C~~----~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (208)
T 2o6s_A 1 CPSRCSCSG----TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFNK 74 (208)
T ss_dssp CCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEECC----CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhc--ccccCcEEECCCCccCccChhhcCC
Confidence 999999997 5899999999999999999999999999999988887776 6788888888888888887777777
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccc
Q psy10487 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLN 183 (610)
Q Consensus 104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 183 (610)
+++|++|+|++|+|..+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|+++.
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~---------------- 138 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS---------------- 138 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----------------
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce----------------
Confidence 8888888888888777776666677777777777776666655555555555555555555544
Q ss_pred cccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHh
Q psy10487 184 LNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLL 227 (610)
Q Consensus 184 L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~ 227 (610)
++...+..+++|+.|++++|+|.|+|. +.++..|..
T Consensus 139 --------~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 139 --------VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 175 (208)
T ss_dssp --------CCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHH
T ss_pred --------eCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHH
Confidence 444445556677777777777777775 555555544
No 18
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.91 E-value=1.7e-23 Score=203.24 Aligned_cols=187 Identities=30% Similarity=0.560 Sum_probs=139.1
Q ss_pred CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY 103 (610)
Q Consensus 24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~ 103 (610)
....|.|.| ..++|.+++++++|..++.+|++|+|++|.|+.+.+..|. ++.+|++|+|++|.|..+++..|..
T Consensus 13 ~~~~~~Cs~----~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 13 CPSQCSCSG----TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVFDS 86 (229)
T ss_dssp CCTTCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEeC----CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhccc
Confidence 346799997 4799999999999999999999999999999888777776 6777777777777777777666777
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccc
Q psy10487 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLN 183 (610)
Q Consensus 104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 183 (610)
+++|++|+|++|+|+.+++..|..+++|+.|+|++|.++.++ ..+..+++|+.|+
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-------------------------~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP-------------------------RGIERLTHLTHLA 141 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-------------------------TTGGGCTTCSEEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC-------------------------cccccCCCCCEEE
Confidence 777777777777776666555555555555555555554332 2345566677777
Q ss_pred cccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhcc-----------CCCCCCCCCCC
Q psy10487 184 LNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSK-----------LYSHPLSCTEP 241 (610)
Q Consensus 184 L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~-----------l~~~~~~C~a~ 241 (610)
|++|+|+.++...|..+++|+.|++.+|+|.|+|. +.++..|+.... .+.....|..+
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~ 211 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT 211 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCC
Confidence 77777777776677788899999999999999996 889999987532 13345677665
No 19
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.90 E-value=1.3e-23 Score=218.60 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=141.1
Q ss_pred cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc-CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy10487 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK-YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYL 136 (610)
Q Consensus 58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~-~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~L 136 (610)
+.++++++.++.++.... ..|+.|+|++|.|+.+.+..|. ++.+|++|+|++|+|..+.+..|.++++|++|+|
T Consensus 21 ~~l~c~~~~l~~iP~~~~-----~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-----TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCccCC-----CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 478999999999986543 3689999999999999999998 9999999999999999999999999999999999
Q ss_pred eCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccc---cCCCcccEEecCCCcc
Q psy10487 137 NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVF---FPTPNLKTLSLDGNPW 213 (610)
Q Consensus 137 s~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~l~l~~N~~ 213 (610)
++|.++.+.+..|..+++|+.|+|++|+|..+.+..|..+.+|+.|+|++|+|+.++...| ..+++|+.|+|++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999999999899999999999999999999998999999999999999999999998877 5689999999999998
Q ss_pred cc
Q psy10487 214 CC 215 (610)
Q Consensus 214 ~c 215 (610)
..
T Consensus 176 ~~ 177 (361)
T 2xot_A 176 KK 177 (361)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 20
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=3.4e-23 Score=202.50 Aligned_cols=184 Identities=20% Similarity=0.336 Sum_probs=167.7
Q ss_pred CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCC-Ccccchhh
Q psy10487 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSG-IREVHRDT 100 (610)
Q Consensus 22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~-l~~i~~~~ 100 (610)
..||..|.|.+. +...++|.+ ++++|. ++.++++|+|++|+|+.++...|. ++++|++|+|++|. +..+.+.+
T Consensus 2 ~~cp~~C~C~~~-~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~ 75 (239)
T 2xwt_C 2 GCSSPPCECHQE-EDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS 75 (239)
T ss_dssp -CCSSSCSEEEC-STTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred CCCCCCCeeCCC-CcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence 369999999861 257899988 999998 999999999999999999998888 79999999999997 99999999
Q ss_pred hcCCCCCcEEEccC-CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCcc---EEEccCc-cccccCHHHhhc
Q psy10487 101 FKYLTILVEVDLSD-NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLK---TIELQHC-QIHSVHKDALIH 175 (610)
Q Consensus 101 f~~l~~L~~LdLs~-n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~ 175 (610)
|.++++|++|+|++ |+|..+++..|.++++|++|+|++|.++.++. |..+.+|+ .|++++| ++..+.+..|..
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccc
Confidence 99999999999998 99999999999999999999999999999765 88888888 9999999 999998888999
Q ss_pred Ccccc-ccccccccccccCcccccCCCcccEEecCCCc-cc
Q psy10487 176 LTALE-SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP-WC 214 (610)
Q Consensus 176 l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~-~~ 214 (610)
+.+|+ .|++++|+++.++...|.. .+|+.|++++|+ +.
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLT 193 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCC
T ss_pred hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcc
Confidence 99999 9999999999998887766 789999999995 54
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=3.6e-23 Score=214.62 Aligned_cols=186 Identities=25% Similarity=0.397 Sum_probs=170.9
Q ss_pred CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102 (610)
Q Consensus 23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~ 102 (610)
.|+..|.|.|. ..++|++++++++|..++.++++|+|++|.|+.++...|. ++++|++|+|++|.+..+.+.+|.
T Consensus 23 ~~~~~~~C~~~---~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 23 SNQASLSCDRN---GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp ----CCEECTT---SEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCccCCCCCCC---eEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhc--cCCCCCEEECCCCccCccCHhhcC
Confidence 47888999984 4599999999999999999999999999999999988887 799999999999999999999999
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCc-CcCCCCCCccEEEccCc-cccccCHHHhhcCcccc
Q psy10487 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA-GQFPKLPYLKTIELQHC-QIHSVHKDALIHLTALE 180 (610)
Q Consensus 103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 180 (610)
++++|++|+|++|+|..+++..|.++++|++|+|++|.++.++. ..|..+++|+.|++++| .+..+.+..|..+++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 99999999999999999999889999999999999999999887 67999999999999999 58888888899999999
Q ss_pred ccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487 181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~ 213 (610)
.|++++|.+..+.+..+..+++|+.|++++|.+
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 999999999999888899999999999999986
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=210.93 Aligned_cols=227 Identities=22% Similarity=0.378 Sum_probs=163.2
Q ss_pred HhccCCCCCCCCCCCCeeCccC------------CCcEEEcCCCCCCccCc-cc--CCCccEEEeecCCCCCCChhhhcc
Q psy10487 13 LGTTGSPDWTDCPDTCRCKWTL------------GKKSALCKDANFTALPS-TL--DSDIQVLDLNNNKISYLTKEAFKS 77 (610)
Q Consensus 13 ~~~~~~~~~~~Cp~~C~C~~~~------------~~~~~~C~~~~l~~lP~-~l--~~~L~~L~L~~n~i~~l~~~~~~~ 77 (610)
..+.++...+.||..|.|+-+. .-+.++..+++++.+|. .+ ..+|++|+|++|.|+.+.+..|.
T Consensus 19 ~~~~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~- 97 (353)
T 2z80_A 19 KEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS- 97 (353)
T ss_dssp --------CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-
T ss_pred CccCCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC-
Confidence 3444567778999988876421 23678999999998886 33 35789999999999888888787
Q ss_pred cCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCc-ccccCCCCCcEEEeeCc-cccccCcCcCCCCCCc
Q psy10487 78 IGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQ-DTFLGNDRLKVLYLNGN-PITELRAGQFPKLPYL 155 (610)
Q Consensus 78 ~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~-~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L 155 (610)
++++|++|+|++|.++.+.+.+|.++++|++|+|++|++..++. ..|..+++|++|+|++| .+..+.+..|.++++|
T Consensus 98 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 98 -SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp -TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred -CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 68888999998888888888778888888888888888887776 56777777777777776 3555544444444444
Q ss_pred cEEEccCccccccCH-----------------------------------------------------------------
Q psy10487 156 KTIELQHCQIHSVHK----------------------------------------------------------------- 170 (610)
Q Consensus 156 ~~L~L~~n~l~~~~~----------------------------------------------------------------- 170 (610)
+.|++++|++..+.+
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 444444443332211
Q ss_pred --------------HHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhccC-CCC
Q psy10487 171 --------------DALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSKL-YSH 234 (610)
Q Consensus 171 --------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~l-~~~ 234 (610)
..+..+++|+.|++++|+++.++...|..+++|+.|++++|+|.|+|. +.++..|...... ...
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~ 336 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 336 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEES
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccCCC
Confidence 123455678888888888888888778889999999999999999996 8888999886442 234
Q ss_pred CCCCCCC
Q psy10487 235 PLSCTEP 241 (610)
Q Consensus 235 ~~~C~a~ 241 (610)
.+.|..+
T Consensus 337 ~~~C~~p 343 (353)
T 2z80_A 337 SAKCSGS 343 (353)
T ss_dssp CCBBTTT
T ss_pred CcccCCC
Confidence 6788776
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=1.9e-23 Score=224.20 Aligned_cols=155 Identities=25% Similarity=0.266 Sum_probs=135.4
Q ss_pred CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487 56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY 135 (610)
Q Consensus 56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~ 135 (610)
....++.+++.++.++.... .+|++|+|++|+|..+.+.+|.++++|++|+|++|+|..+.+..|.++++|++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-----SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcCccCCCCC-----CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 34578888999999886543 4899999999999999999999999999999999999999999999999999999
Q ss_pred eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc-ccccccCcccccCCCcccEEecCCCccc
Q psy10487 136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG-NRLKHLSESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~l~l~~N~~~ 214 (610)
|++|.++.+....|..+++|+.|+|++|+|..+....|.++++|+.|++++ |.+..++...|..+++|+.|++++|.+.
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 999999999999999999999999999999999887888888888888887 6677777667777777777777777665
Q ss_pred c
Q psy10487 215 C 215 (610)
Q Consensus 215 c 215 (610)
.
T Consensus 210 ~ 210 (452)
T 3zyi_A 210 D 210 (452)
T ss_dssp S
T ss_pred c
Confidence 3
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=9.7e-23 Score=227.79 Aligned_cols=187 Identities=24% Similarity=0.302 Sum_probs=166.3
Q ss_pred CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY 103 (610)
Q Consensus 24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~ 103 (610)
|...|.|... ...++|.+.+|++||..+|.++++|||++|+|+.+++..|. ++++|++|+|++|+|+.+++++|.+
T Consensus 23 ~~~~c~~~~~--~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 23 SWEPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQS 98 (635)
T ss_dssp --CCSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCCCccccCC--CCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHhcC
Confidence 3356777653 57899999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC-HHHhhcCcccccc
Q psy10487 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTALESL 182 (610)
Q Consensus 104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 182 (610)
+++|++|+|++|+|+.+++..|.++.+|++|+|++|.++.+.+..|.++++|+.|+|++|+|+.+. +..+..+.+|+.|
T Consensus 99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 999999999999999999999999999999999999999999989999999999999999998764 5677889999999
Q ss_pred ccccccccccCcccccCCCcc----cEEecCCCccc
Q psy10487 183 NLNGNRLKHLSESVFFPTPNL----KTLSLDGNPWC 214 (610)
Q Consensus 183 ~L~~n~l~~~~~~~~~~~~~L----~~l~l~~N~~~ 214 (610)
++++|+++.+....+..+.++ ..++++.|.+.
T Consensus 179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred cccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence 999999999887666544433 35677777654
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=2.4e-23 Score=222.64 Aligned_cols=153 Identities=25% Similarity=0.288 Sum_probs=135.5
Q ss_pred ccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy10487 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYL 136 (610)
Q Consensus 57 L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~L 136 (610)
...++.+++.++.++.... .+|+.|+|++|+|..+.+.+|.++++|++|+|++|+|..+.+..|.++++|++|+|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-----TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcCcCCCCCC-----CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4578889999999997653 48999999999999999999999999999999999999999999999999999999
Q ss_pred eCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc-ccccccCcccccCCCcccEEecCCCccc
Q psy10487 137 NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG-NRLKHLSESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 137 s~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~l~l~~N~~~ 214 (610)
++|.++.+....|..+++|+.|+|++|+|..+.+..|..+++|+.|+|++ |.+..++...|..+++|+.|++++|.+.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 99999999998999999999999999999999887888888888888887 5666777767777777777777777654
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=6.2e-21 Score=190.23 Aligned_cols=188 Identities=28% Similarity=0.458 Sum_probs=170.3
Q ss_pred CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487 36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~ 114 (610)
-+.+++.+.+++.++. ....+|++|+|++|.|+.++ .+. .+++|++|+|++|.+..+.+..|..+++|++|+|++
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 3678888888888873 22468999999999999874 555 789999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194 (610)
Q Consensus 115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 194 (610)
|++..+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|+++.+.+..|..+++|+.|++++|.++++++
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 99999999989999999999999999999998889999999999999999999988888999999999999999999999
Q ss_pred ccccCCCcccEEecCCCcccccCC-chhhHHHHh
Q psy10487 195 SVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLL 227 (610)
Q Consensus 195 ~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~ 227 (610)
..+..+++|+.|++++|+|.|+|. +.++..|..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 232 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred HHHhCCcCCCEEEccCCCccccCcHHHHHHHHHH
Confidence 889999999999999999999996 566665654
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=3.3e-21 Score=215.32 Aligned_cols=212 Identities=18% Similarity=0.284 Sum_probs=179.0
Q ss_pred EEcCCCCCCccCccc--CCCccEEEeecCCCCCCC-hhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487 39 ALCKDANFTALPSTL--DSDIQVLDLNNNKISYLT-KEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115 (610)
Q Consensus 39 ~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~-~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n 115 (610)
+++...+...++..+ ..+++.+++.++++.... ...|. ++.+|+.++++.|.+..+.+..|..+..|++|+|++|
T Consensus 402 L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~--~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N 479 (635)
T 4g8a_A 402 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479 (635)
T ss_dssp EECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred hhccccccccccccccccccccchhhhhccccccccccccc--cccccccccccccccccccccccccchhhhhhhhhhc
Confidence 334444443333332 246777888777654443 34555 7889999999999999999999999999999999999
Q ss_pred CC-CCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487 116 QI-AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194 (610)
Q Consensus 116 ~l-~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 194 (610)
++ ..+.+..|..+++|++|+|++|.++.+.+..|.++++|+.|+|++|+|+.+.+..|..+++|+.|+|++|+|+.+.+
T Consensus 480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 74 55677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC-CcccEEecCCCcccccCCchhhHHHHhhcc---CCCCCCCCCCCCccCCCccccc
Q psy10487 195 SVFFPT-PNLKTLSLDGNPWCCDCHLRSFRNWLLKSK---LYSHPLSCTEPGMLQTKHWDDV 252 (610)
Q Consensus 195 ~~~~~~-~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~---l~~~~~~C~a~~~l~g~~~~~v 252 (610)
..+..+ .+|+.|++++|+|.|||++.||..|++... .+...++|..|..++|+.+.++
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~ 621 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 621 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGC
T ss_pred HHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeee
Confidence 888887 689999999999999999999999998654 3456789999999998877665
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.5e-21 Score=217.44 Aligned_cols=216 Identities=19% Similarity=0.276 Sum_probs=173.7
Q ss_pred cEEEcCCCCCCccCcccC--CCccEEEeecCCCCCCCh-hhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDANFTALPSTLD--SDIQVLDLNNNKISYLTK-EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l~--~~L~~L~L~~n~i~~l~~-~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
+.++..+++++.+|..+. .+|+.|+|++|.+..+.+ ..|. ++++|++|++++|.+....+..|..+++|++|+|+
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhh--ccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 556677777777775543 478889999988887766 5666 78899999999999999888889999999999999
Q ss_pred CCCCCC-CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccccc
Q psy10487 114 DNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL 192 (610)
Q Consensus 114 ~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 192 (610)
+|++.. +.+..|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|++..+.+..|..+++|+.|+|++|+++.+
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence 999987 4567899999999999999999999988899999999999999999999889999999999999999999988
Q ss_pred CcccccCCC-cccEEecCCCcccccCCchhhHHHHhhccC---CCCCCCCCCCCccCCCcccccccc
Q psy10487 193 SESVFFPTP-NLKTLSLDGNPWCCDCHLRSFRNWLLKSKL---YSHPLSCTEPGMLQTKHWDDVKAQ 255 (610)
Q Consensus 193 ~~~~~~~~~-~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l---~~~~~~C~a~~~l~g~~~~~v~~~ 255 (610)
+.. +..++ +|+.|++++|+|.|+|.+.||..|+..... +...+.|..|..+.|..+.++...
T Consensus 537 p~~-~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~ 602 (606)
T 3vq2_A 537 KGI-LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNS 602 (606)
T ss_dssp ESC-GGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC----------------
T ss_pred CHh-HhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeecccc
Confidence 876 66776 599999999999999999999999876432 446789999988888887766543
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=3.2e-21 Score=214.74 Aligned_cols=189 Identities=21% Similarity=0.312 Sum_probs=171.9
Q ss_pred CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102 (610)
Q Consensus 23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~ 102 (610)
.|+..|.|... ...++|.+.+++++|..++.++++|+|++|.|+.+.+..|. ++++|++|+|++|.+..+.+.+|.
T Consensus 3 ~~~~~C~~~~~--~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (606)
T 3t6q_A 3 SSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTFQ 78 (606)
T ss_dssp ---CCCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTTTT
T ss_pred cccCceecccC--CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhc--cCccceEEECCCCccceeChhhcc
Confidence 47888999754 46899999999999999999999999999999999998898 899999999999999999999999
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccc
Q psy10487 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL 182 (610)
Q Consensus 103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 182 (610)
++++|++|+|++|++..+.+..|.++++|++|+|++|.++.+.+..|.++++|+.|+|++|++..+....+..+++|+.|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 99999999999999999999999999999999999999999988889999999999999999998765556668999999
Q ss_pred ccccccccccCcccccCCCccc--EEecCCCcccc
Q psy10487 183 NLNGNRLKHLSESVFFPTPNLK--TLSLDGNPWCC 215 (610)
Q Consensus 183 ~L~~n~l~~~~~~~~~~~~~L~--~l~l~~N~~~c 215 (610)
++++|.++.+.+..+..+.+|+ .|++++|.+..
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 9999999999888888888888 88999998654
No 30
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.4e-21 Score=197.92 Aligned_cols=168 Identities=23% Similarity=0.403 Sum_probs=128.7
Q ss_pred CCCC-CeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCc-ccchhhh
Q psy10487 24 CPDT-CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR-EVHRDTF 101 (610)
Q Consensus 24 Cp~~-C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~-~i~~~~f 101 (610)
||+. |+|.+ ..|+|.+++|++||..++.++++|+|++|+|+.++.++|. ++++|++|+|++|.+. .++.++|
T Consensus 2 Cp~~~C~C~~----~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f 75 (350)
T 4ay9_X 2 CHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVF 75 (350)
T ss_dssp CCCSSSEEET----TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSB
T ss_pred CCCCccEeeC----CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHh
Confidence 8875 99985 5899999999999999999999999999999999999998 8999999999999974 5777899
Q ss_pred cCCCCCcE-EEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccC-ccccccCHHHhhcCc-c
Q psy10487 102 KYLTILVE-VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH-CQIHSVHKDALIHLT-A 178 (610)
Q Consensus 102 ~~l~~L~~-LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~ 178 (610)
.++++|++ +++++|+|..++++.|.++++|++|++++|.++.+....+....++..|++.+ +++..+....|..+. .
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchh
Confidence 99998876 56677999999999999999999999999998877665554444444454432 344444444443332 3
Q ss_pred ccccccccccccccCcccc
Q psy10487 179 LESLNLNGNRLKHLSESVF 197 (610)
Q Consensus 179 L~~L~L~~n~l~~~~~~~~ 197 (610)
++.|+|++|+|+.++...|
T Consensus 156 l~~L~L~~N~i~~i~~~~f 174 (350)
T 4ay9_X 156 SVILWLNKNGIQEIHNSAF 174 (350)
T ss_dssp CEEEECCSSCCCEECTTSS
T ss_pred hhhhccccccccCCChhhc
Confidence 4444455544444444333
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=2e-21 Score=219.40 Aligned_cols=183 Identities=26% Similarity=0.350 Sum_probs=130.0
Q ss_pred CCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCc--------ccccCCCCCcEEEeeCccccccCcCcCC
Q psy10487 79 GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQ--------DTFLGNDRLKVLYLNGNPITELRAGQFP 150 (610)
Q Consensus 79 ~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~--------~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 150 (610)
++.+|+.|+|++|.|..+++.+|.++++|++|+|++|++..+.. ..|.++++|+.|+|++|.++.++...|.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 56788888888888888888888888888888888888876532 2367888899999999998888888889
Q ss_pred CCCCccEEEccCccccccCHHHhhcCccccccccccccccccCccccc-CCCcccEEecCCCcccccCCc-hhhHHHHhh
Q psy10487 151 KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFF-PTPNLKTLSLDGNPWCCDCHL-RSFRNWLLK 228 (610)
Q Consensus 151 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~l~l~~N~~~c~c~l-~~~~~~l~~ 228 (610)
++++|+.|+|++|+|+.+++..|..+.+|+.|+|++|+++.+++..+. .+++|+.+++++|+|.|+|.. .||..|+..
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~ 637 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHh
Confidence 999999999999999999888888899999999999999999887776 678999999999999999996 999999865
Q ss_pred ccC----CCCCCCCCCCCccCCCcccccccccccCCC
Q psy10487 229 SKL----YSHPLSCTEPGMLQTKHWDDVKAQEFACPP 261 (610)
Q Consensus 229 ~~l----~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P 261 (610)
... ....+.|..|..+.|+.+.++......|.+
T Consensus 638 ~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~ 674 (680)
T 1ziw_A 638 THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSA 674 (680)
T ss_dssp C------------------------------------
T ss_pred cCcccccccCCcEECCchHHCCCcccccChhhcCCCc
Confidence 432 135689999999999999888887766554
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.2e-20 Score=193.88 Aligned_cols=179 Identities=28% Similarity=0.460 Sum_probs=155.5
Q ss_pred CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102 (610)
Q Consensus 23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~ 102 (610)
.||..|.|.+ +.++|.+.+++++|..++.+++.|+|++|.|+.+.+..|. ++++|++|+|++|.+..+.+.+|.
T Consensus 26 ~cp~~c~c~l----~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~ 99 (332)
T 2ft3_A 26 MCPFGCHCHL----RVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKAFS 99 (332)
T ss_dssp CCCSSCEEET----TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGGST
T ss_pred CCCCCCcccC----CEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHhHhh
Confidence 7999999986 5899999999999999999999999999999999988888 799999999999999999999999
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccc--cCHHHhhcCcccc
Q psy10487 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHS--VHKDALIHLTALE 180 (610)
Q Consensus 103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~ 180 (610)
++++|++|+|++|++..++...+ ++|++|+|++|.++.+....|.++++|+.|++++|.+.. +.+..|..+ +|+
T Consensus 100 ~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp TCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred CcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 99999999999999998887654 789999999999999988889999999999999999864 555666666 788
Q ss_pred ccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487 181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~ 214 (610)
.|++++|+++.++...+ ++|+.|++++|.+.
T Consensus 176 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLP---ETLNELHLDHNKIQ 206 (332)
T ss_dssp CCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCC
T ss_pred EEECcCCCCCccCcccc---CCCCEEECCCCcCC
Confidence 88888888777765433 46677777777654
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=7.9e-21 Score=203.83 Aligned_cols=184 Identities=22% Similarity=0.354 Sum_probs=155.9
Q ss_pred CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCc-ccchhh
Q psy10487 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR-EVHRDT 100 (610)
Q Consensus 22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~-~i~~~~ 100 (610)
.+||..|.|.+ ..++|.+.+++++|. ++.++++|+|++|.|+.+.+..|. ++++|++|+|++|.+. .+.+.+
T Consensus 2 ~p~~~~c~~~~----~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~~ 74 (455)
T 3v47_A 2 DPGTSECSVIG----YNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNNT 74 (455)
T ss_dssp -----CCEEET----TEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTTT
T ss_pred CCccceeEEEc----cccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECccc
Confidence 46889999974 589999999999997 999999999999999999888888 7999999999999987 677888
Q ss_pred hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccc--cCcCcCCCCCCccEEEccCccccccCHHH-hhcCc
Q psy10487 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE--LRAGQFPKLPYLKTIELQHCQIHSVHKDA-LIHLT 177 (610)
Q Consensus 101 f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 177 (610)
|.++++|++|+|++|++..+.+..|.++++|++|+|++|.++. .....|..+++|+.|+|++|++..+.+.. |.+++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 9999999999999999999989999999999999999999987 33455889999999999999999986655 78999
Q ss_pred cccccccccccccccCcccccCC--CcccEEecCCCc
Q psy10487 178 ALESLNLNGNRLKHLSESVFFPT--PNLKTLSLDGNP 212 (610)
Q Consensus 178 ~L~~L~L~~n~l~~~~~~~~~~~--~~L~~l~l~~N~ 212 (610)
+|+.|++++|.+..+.+..+..+ .+|+.+++.+|.
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~ 191 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence 99999999999998877655544 334444444444
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=3.4e-20 Score=190.26 Aligned_cols=180 Identities=29% Similarity=0.476 Sum_probs=159.6
Q ss_pred CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102 (610)
Q Consensus 23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~ 102 (610)
.||..|.|.+ +.++|.+.+++.+|..++.++++|+|++|.|+.++...|. ++++|++|+|++|.+..+.+.+|.
T Consensus 24 ~cp~~c~c~l----~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~ 97 (330)
T 1xku_A 24 VCPFRCQCHL----RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFA 97 (330)
T ss_dssp CCCTTCEEET----TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CCCCCCcCCC----eEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHHhc
Confidence 7999999986 5899999999999999999999999999999999998887 799999999999999999999999
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccc--cCHHHhhcCcccc
Q psy10487 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHS--VHKDALIHLTALE 180 (610)
Q Consensus 103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~ 180 (610)
.+++|++|+|++|+|..++...+ ++|++|+|++|.++.+....|.++++|+.|++++|.+.. +.+..|..+++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 99999999999999998876544 789999999999999888788899999999999998864 5567788888999
Q ss_pred ccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487 181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~ 214 (610)
.|++++|.++.++...+ ++|+.|++++|.+.
T Consensus 175 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 175 YIRIADTNITTIPQGLP---PSLTELHLDGNKIT 205 (330)
T ss_dssp EEECCSSCCCSCCSSCC---TTCSEEECTTSCCC
T ss_pred EEECCCCccccCCcccc---ccCCEEECCCCcCC
Confidence 99999998888776443 57888888888764
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=1.4e-20 Score=209.50 Aligned_cols=215 Identities=21% Similarity=0.323 Sum_probs=169.4
Q ss_pred cEEEcCCCCCCccCc-cc--CCCccEEEeecCCCCCCCh-hhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487 37 KSALCKDANFTALPS-TL--DSDIQVLDLNNNKISYLTK-EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL 112 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~-~l--~~~L~~L~L~~n~i~~l~~-~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL 112 (610)
+.++..++++..++. .+ ..+|+.|+|++|.+....+ ..|. ++++|+.|++++|.+..+.+..|..+++|++|+|
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT--TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh--CcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 345555555554432 22 2356777777776665543 2354 5777888888888877777777888888888888
Q ss_pred cCCCCCCC---CcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccc
Q psy10487 113 SDNQIAWL---HQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189 (610)
Q Consensus 113 s~n~l~~l---~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 189 (610)
++|++... ....|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|+++.+.+..|.++.+| .|++++|++
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 88887652 23557788888888888888888888889999999999999999999888889999999 999999999
Q ss_pred cccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhcc---CCCCCCCCCCCCccCCCccccccc
Q psy10487 190 KHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSK---LYSHPLSCTEPGMLQTKHWDDVKA 254 (610)
Q Consensus 190 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~---l~~~~~~C~a~~~l~g~~~~~v~~ 254 (610)
+.+.+..+..+++|+.|++++|+|.|+|...||..|+.... .+...+.|..|..+.|..+.++..
T Consensus 536 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~ 603 (606)
T 3t6q_A 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603 (606)
T ss_dssp CCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred cccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence 99988888889999999999999999999999999998643 245678999999999988877754
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=2.7e-20 Score=207.24 Aligned_cols=183 Identities=21% Similarity=0.276 Sum_probs=164.5
Q ss_pred CeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCC
Q psy10487 28 CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTIL 107 (610)
Q Consensus 28 C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L 107 (610)
|.|... ...++|.+.+++++|..++.++++|+|++|.|+.+++..|. ++++|++|+|++|.+..+.+.+|.++++|
T Consensus 7 c~~~~~--~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L 82 (606)
T 3vq2_A 7 CIEVVP--NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHHL 82 (606)
T ss_dssp CEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ceecCC--CCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhchhhc
Confidence 677433 46899999999999999999999999999999999998898 89999999999999999999999999999
Q ss_pred cEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC-HHHhhcCcccccccccc
Q psy10487 108 VEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTALESLNLNG 186 (610)
Q Consensus 108 ~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 186 (610)
++|+|++|++..+.+..|.++++|++|+|++|.++.+.+..|.++++|+.|+|++|++..+. +..|.++++|+.|++++
T Consensus 83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred CEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 99999999999999999999999999999999999999888999999999999999998754 67899999999999999
Q ss_pred ccccccCcccccCCCccc----EEecCCCccc
Q psy10487 187 NRLKHLSESVFFPTPNLK----TLSLDGNPWC 214 (610)
Q Consensus 187 n~l~~~~~~~~~~~~~L~----~l~l~~N~~~ 214 (610)
|.++.+.+..+..+.+|+ .+++++|.+.
T Consensus 163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp SCCCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred CcceecChhhhhhhhccccccceeeccCCCcc
Confidence 999988776666555443 6777777654
No 37
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.82 E-value=9.6e-20 Score=169.21 Aligned_cols=140 Identities=26% Similarity=0.439 Sum_probs=126.5
Q ss_pred CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY 103 (610)
Q Consensus 24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~ 103 (610)
||..|.|.| ..++|.+++++++|..++.+++.|+|++|.|+.++...|. ++.+|++|+|++|.|..+.+..|..
T Consensus 1 Cp~~C~C~~----~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDK 74 (177)
T ss_dssp CCTTCEEET----TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CcCCCEeCC----CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccC
Confidence 999999987 5899999999999999999999999999999999988887 7889999999999999998888899
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC
Q psy10487 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169 (610)
Q Consensus 104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (610)
+++|++|+|++|+|+.+++..|..+++|++|+|++|.++.++...|..+++|+.|+|++|.+....
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999999999999999998888888999999999999999888877888888888888888877653
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=9.1e-20 Score=199.07 Aligned_cols=201 Identities=23% Similarity=0.413 Sum_probs=168.7
Q ss_pred cEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch--hhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR--DTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~~LdLs 113 (610)
+.++..++++..++. .-..+|++|+|++|.|+...+..+. ++++|++|+|++|.+..+.. ..|..+++|++|+|+
T Consensus 305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 455555666655542 3456899999999999987777776 78999999999999997543 678999999999999
Q ss_pred CCCCCC-CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccccc
Q psy10487 114 DNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL 192 (610)
Q Consensus 114 ~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 192 (610)
+|++.. ++...|..+++|+.|+|++|.++...+..+. ++|+.|+|++|+|+.++.. +..+++|+.|+|++|+++.+
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l 459 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSV 459 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh-hhcCCCCCEEECCCCcCCcc
Confidence 999998 7777789999999999999999876554443 7999999999999988654 45899999999999999999
Q ss_pred CcccccCCCcccEEecCCCcccccCCchhh-HHHHhhcc-CCCCCCCCCCCC
Q psy10487 193 SESVFFPTPNLKTLSLDGNPWCCDCHLRSF-RNWLLKSK-LYSHPLSCTEPG 242 (610)
Q Consensus 193 ~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~-~~~l~~~~-l~~~~~~C~a~~ 242 (610)
+...+..+++|+.|++++|+|.|+|.+.|| ..|+.... .....+.|..|.
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p~ 511 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 511 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTC
T ss_pred CHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCcc
Confidence 888788999999999999999999999999 89987543 355778998873
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=203.45 Aligned_cols=185 Identities=24% Similarity=0.308 Sum_probs=169.7
Q ss_pred CCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCC
Q psy10487 27 TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI 106 (610)
Q Consensus 27 ~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~ 106 (610)
.|+|... ...++|.+.+++++|..++.+++.|+|++|.|+.+....|. ++++|++|+|++|.+..+.+.+|.++++
T Consensus 2 ~c~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 77 (570)
T 2z63_A 2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSH 77 (570)
T ss_dssp CSEEEET--TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CccccCC--CcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhh--CCCCceEEECCCCcCCccCcccccCchh
Confidence 5787754 57899999999999999999999999999999999988888 7999999999999999999999999999
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC-HHHhhcCccccccccc
Q psy10487 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTALESLNLN 185 (610)
Q Consensus 107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~ 185 (610)
|++|+|++|++..+++..|.++++|++|+|++|.++.+....|.++++|+.|+|++|.+..+. +..|.++++|+.|+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred CCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 999999999999999999999999999999999999998878999999999999999999854 6789999999999999
Q ss_pred cccccccCcccccCCCcc----cEEecCCCcccc
Q psy10487 186 GNRLKHLSESVFFPTPNL----KTLSLDGNPWCC 215 (610)
Q Consensus 186 ~n~l~~~~~~~~~~~~~L----~~l~l~~N~~~c 215 (610)
+|.++.+....+..+.+| ..+++++|.+..
T Consensus 158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 999999888777777777 788999887654
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=8.8e-20 Score=195.67 Aligned_cols=162 Identities=24% Similarity=0.434 Sum_probs=147.9
Q ss_pred CCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEE
Q psy10487 80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE 159 (610)
Q Consensus 80 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 159 (610)
..+|+.|+|++|.+..+.+..|..+++|++|+|++|++..+.+..|.++++|++|+|++|.++.+.+..|..+++|+.|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred ccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhcc-CCCCCCC
Q psy10487 160 LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSK-LYSHPLS 237 (610)
Q Consensus 160 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~-l~~~~~~ 237 (610)
|++|++..+.+..|..+++|+.|+|++|+++.++...|..+++|+.|++++|+|.|+|. +.|+..|+.... .......
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 433 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK 433 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCB
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccceeeeee
Confidence 99999999988899999999999999999999999888999999999999999999998 788889997543 2344566
Q ss_pred CCCC
Q psy10487 238 CTEP 241 (610)
Q Consensus 238 C~a~ 241 (610)
|..+
T Consensus 434 c~~~ 437 (455)
T 3v47_A 434 CSGS 437 (455)
T ss_dssp BTTT
T ss_pred ecCC
Confidence 7654
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=3e-19 Score=196.87 Aligned_cols=199 Identities=26% Similarity=0.385 Sum_probs=166.0
Q ss_pred cEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch--hhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR--DTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~~LdLs 113 (610)
+.++..++++..++. ....+|++|+|++|.|+...+..|. ++++|++|+|++|.+..++. ..|..+++|++|+|+
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 455556666655542 3456899999999999987777777 79999999999999998763 568999999999999
Q ss_pred CCCCCC-CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccccc
Q psy10487 114 DNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL 192 (610)
Q Consensus 114 ~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 192 (610)
+|++.. ++...|.++++|+.|+|++|.++...+..+. ++|+.|+|++|+|+.++...+ .+++|+.|+|++|+++.+
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSV 488 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCC
Confidence 999998 8878899999999999999999876554443 699999999999999866554 899999999999999999
Q ss_pred CcccccCCCcccEEecCCCcccccCCchhhHH-HHhhccC---------CCCCCCCCC
Q psy10487 193 SESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN-WLLKSKL---------YSHPLSCTE 240 (610)
Q Consensus 193 ~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~-~l~~~~l---------~~~~~~C~a 240 (610)
+...+..+++|+.|++++|+|.|+|.+.||.. |...... ....+.|..
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred CHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 98878899999999999999999999999966 8764432 234677765
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=1.2e-19 Score=204.78 Aligned_cols=183 Identities=25% Similarity=0.370 Sum_probs=164.2
Q ss_pred CCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCC
Q psy10487 27 TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI 106 (610)
Q Consensus 27 ~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~ 106 (610)
.|.|.+ ..++|++.+++++|..++.++++|+|++|.|+.+++..|. ++++|++|+|++|.+..+.+.+|+++++
T Consensus 1 ~C~~~~----~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 74 (680)
T 1ziw_A 1 KCTVSH----EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPM 74 (680)
T ss_dssp ---CBS----SEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTT
T ss_pred CceeEC----CeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccC
Confidence 377774 5899999999999999999999999999999999999898 7899999999999999999999999999
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc
Q psy10487 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG 186 (610)
Q Consensus 107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 186 (610)
|++|+|++|++..+++..|.++++|++|+|++|.++.+.+..|.++++|+.|+|++|++..+.+..|.++++|+.|++++
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 99999999999999988899999999999999999999888899999999999999999988888888899999999999
Q ss_pred ccccccCccccc--CCCcccEEecCCCcccc
Q psy10487 187 NRLKHLSESVFF--PTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 187 n~l~~~~~~~~~--~~~~L~~l~l~~N~~~c 215 (610)
|.++.+....+. .+++|+.|++++|.+..
T Consensus 155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 155 NKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp SCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CcccccCHHHhhccccccccEEECCCCcccc
Confidence 999888776543 45789999999987654
No 43
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=99.80 E-value=1.1e-19 Score=200.64 Aligned_cols=206 Identities=18% Similarity=0.186 Sum_probs=143.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|+|.+.|..+.... .... .+..+|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....+....
T Consensus 357 ~D~G~Y~C~a~N~~g~~~~-~~~l-~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~ 434 (570)
T 3b43_A 357 EDSGDYTCEAHNAAGSASS-STSL-KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 434 (570)
T ss_dssp GGCEEEEEEEEBTTBCCEE-EEEE-CEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEE
T ss_pred ccCEEEEEEEEeCCCEEEE-EEEE-EecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEE
Confidence 3677899999887654322 1211 2235788877888888899999999999999999999999999988765532222
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG 390 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (610)
.++. .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.+...+....+..+..
T Consensus 435 ~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~---~P~~~~~~~~~~~~~g~~----------- 494 (570)
T 3b43_A 435 SENF------LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA---PPRFVKKLSDISTVVGEE----------- 494 (570)
T ss_dssp EETT------EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC---CCEEEECCCCBCCBTTCC-----------
T ss_pred EcCC------EEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEecc---CCcccccCCCceecCCCe-----------
Confidence 2111 24899999999999999999999999999999998843 445544443333222221
Q ss_pred eEEEEEEeee--cccccccccCCc----ccc--ccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 391 MSFCVCRAHE--HKNKRRKRKGKM----KQS--VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 391 ~~~~~~~~~~--~~~~~~~~~~~~----~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
+.+.|...+ .+...|.+.+.. ... +...+....|.|.+++.+|+|.|+|.|.|..|.++..+.|.|.|
T Consensus 495 -~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~e 570 (570)
T 3b43_A 495 -VQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570 (570)
T ss_dssp -EEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred -EEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEeC
Confidence 122333333 233344332210 111 11223456899999999999999999999999999999998864
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=2.1e-19 Score=197.58 Aligned_cols=181 Identities=28% Similarity=0.421 Sum_probs=164.3
Q ss_pred CeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCC
Q psy10487 28 CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTIL 107 (610)
Q Consensus 28 C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L 107 (610)
|.|.|. ..++|++++++++|..++.++++|+|++|+|+.+.+..|. ++++|++|+|++|.+..+.+.+|.++++|
T Consensus 2 ~~C~~~---~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 76 (549)
T 2z81_A 2 LSCDAS---GVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSL 76 (549)
T ss_dssp CEECTT---SEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCC---ceEECCCCccccccccCCCCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccC
Confidence 456663 2467889999999999999999999999999999888887 79999999999999999999999999999
Q ss_pred cEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccC-cCcCCCCCCccEEEccCcc-ccccCHHHhhcCccccccccc
Q psy10487 108 VEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR-AGQFPKLPYLKTIELQHCQ-IHSVHKDALIHLTALESLNLN 185 (610)
Q Consensus 108 ~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 185 (610)
++|+|++|++..+++..|.++++|++|+|++|.++.+. +..|.++++|+.|++++|+ +..+++..|.++++|+.|+++
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 99999999999999999999999999999999999763 4578999999999999998 777777789999999999999
Q ss_pred cccccccCcccccCCCcccEEecCCCcc
Q psy10487 186 GNRLKHLSESVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 186 ~n~l~~~~~~~~~~~~~L~~l~l~~N~~ 213 (610)
+|.+++..+..+..+++|+.|++.+|..
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCcccccChhhhhccccCceEecccCcc
Confidence 9999998888888899999999998875
No 45
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=4.9e-19 Score=172.81 Aligned_cols=175 Identities=17% Similarity=0.238 Sum_probs=159.6
Q ss_pred CcEEEcCCCCCCccCcc-c--CCCccEEEeecCC-CCCCChhhhcccCCCCccEEEccc-CCCcccchhhhcCCCCCcEE
Q psy10487 36 KKSALCKDANFTALPST-L--DSDIQVLDLNNNK-ISYLTKEAFKSIGLLNLQRIYLKN-SGIREVHRDTFKYLTILVEV 110 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~-l--~~~L~~L~L~~n~-i~~l~~~~~~~~~l~~L~~L~L~~-n~l~~i~~~~f~~l~~L~~L 110 (610)
-+.++..+++++.+|.. + ..+|++|+|++|. ++.++...|. ++++|++|+|++ |.++.+++.+|.++++|++|
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 47889999999999873 3 3589999999997 9999998998 799999999998 99999999999999999999
Q ss_pred EccCCCCCCCCcccccCCCCCc---EEEeeCc-cccccCcCcCCCCCCcc-EEEccCccccccCHHHhhcCccccccccc
Q psy10487 111 DLSDNQIAWLHQDTFLGNDRLK---VLYLNGN-PITELRAGQFPKLPYLK-TIELQHCQIHSVHKDALIHLTALESLNLN 185 (610)
Q Consensus 111 dLs~n~l~~l~~~~f~~l~~L~---~L~Ls~N-~l~~l~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 185 (610)
+|++|++..++. |..+.+|+ .|+|++| .++.+....|.++++|+ .|++++|+++.++...|.. .+|+.|+++
T Consensus 111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999999875 88889998 9999999 99999998999999999 9999999999998777766 899999999
Q ss_pred ccc-ccccCcccccCC-CcccEEecCCCcccc
Q psy10487 186 GNR-LKHLSESVFFPT-PNLKTLSLDGNPWCC 215 (610)
Q Consensus 186 ~n~-l~~~~~~~~~~~-~~L~~l~l~~N~~~c 215 (610)
+|+ ++.++...|..+ ++|+.|++++|.+..
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 995 999998889999 999999999998753
No 46
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=99.79 E-value=8.4e-20 Score=201.74 Aligned_cols=241 Identities=16% Similarity=0.190 Sum_probs=156.6
Q ss_pred CCCCCCCCCCCCccCCCccc-ccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWD-DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~-~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+..+..... .+.......+|.+......+.+.+|+.++|.|.+.|.|.|.|+|+|+|..+......+.
T Consensus 71 ~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~ 150 (570)
T 3b43_A 71 SDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQT 150 (570)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEE
T ss_pred hhCEEEEEEEEeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEE
Confidence 46788999988765432211 11112223467777777788888999999999999999999999999998876543222
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI 389 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (610)
.... ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+...+|.+...+....+..+..+
T Consensus 151 ~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~--------- 215 (570)
T 3b43_A 151 SFIH------NVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESG--------- 215 (570)
T ss_dssp EEET------TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCE---------
T ss_pred EEEC------CEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeE---------
Confidence 2111 2358999999999999999999999999988888888655555555544443333222221
Q ss_pred eeEEEEEEeeecc--cccccccCCc---ccc--ccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCC
Q psy10487 390 GMSFCVCRAHEHK--NKRRKRKGKM---KQS--VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPP 462 (610)
Q Consensus 390 ~~~~~~~~~~~~~--~~~~~~~~~~---~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp 462 (610)
.+.|...+.+ ...|.+.+.. ... +........|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++|.
T Consensus 216 ---~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 292 (570)
T 3b43_A 216 ---TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR 292 (570)
T ss_dssp ---EEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCE
T ss_pred ---EEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCc
Confidence 2233333322 2233322211 111 11223456899999999999999999999999999999998876543
Q ss_pred cceeEec----CCCC----Cc-ccccCCCc-ccccCC
Q psy10487 463 VHITIES----HAVD----PQ-VSVFPPPP-EFSSNH 489 (610)
Q Consensus 463 ~~i~ie~----~~~~----~l-~~~~P~pp-ef~~~~ 489 (610)
.....+. ..++ .| +.++|+|. .|..+-
T Consensus 293 ~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~ 329 (570)
T 3b43_A 293 FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 329 (570)
T ss_dssp EEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETT
T ss_pred ccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECC
Confidence 2111111 0112 23 66777766 676543
No 47
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.78 E-value=1.1e-19 Score=170.60 Aligned_cols=183 Identities=19% Similarity=0.184 Sum_probs=125.2
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+............. .....|.|.+++.+|+|.|+
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~ 79 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS----DGRAKLTIPAVTKANSGRYS 79 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEE----TTEEEEEESSCCGGGCEEEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeC----CCEEEEEECCCCcccCEEEE
Confidence 46788888889999999999999999999999999999998876654211111100 11358999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee--cccccccccCCc---c
Q psy10487 339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE--HKNKRRKRKGKM---K 413 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~ 413 (610)
|.|.|..|.....+.|.|.....+|.+...+....+..+.. +.+.|...+ .+...|.+.+.. .
T Consensus 80 C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~~~v~W~~~~~~~~~~ 147 (194)
T 2a38_A 80 LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ------------VRLQVRVTGIPTPVVKFYRDGAEIQSS 147 (194)
T ss_dssp EEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEE------------EEEEEEEEEESCCEEEEEETTEECCCS
T ss_pred EEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCE------------EEEEEEEEEecCCeEEEEECCEECCCC
Confidence 99999999988888888865445555544444333322222 123333333 233333332211 1
Q ss_pred cccccc--ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 414 QSVSFN--DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 414 ~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
...... .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 148 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 148 LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp SSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 111111 12227999999999999999999999999888877765
No 48
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.78 E-value=4.4e-18 Score=185.76 Aligned_cols=242 Identities=13% Similarity=0.147 Sum_probs=152.2
Q ss_pred CCCC-CCCCCCCCccCCCcccccccccc---cCCCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEe--cc
Q psy10487 231 LYSH-PLSCTEPGMLQTKHWDDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVL--HN 303 (610)
Q Consensus 231 l~~~-~~~C~a~~~l~g~~~~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l--~~ 303 (610)
.+.+ .|+|.+.+..+......+..... ..+|.+...+....+.+|+.++|.|.+.|.|.|. +.|++++..+ ..
T Consensus 178 ~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~ 257 (524)
T 2ec8_A 178 AYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQE 257 (524)
T ss_dssp GGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCE
T ss_pred hhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcccc
Confidence 4667 89999877643332223333222 3678888888888999999999999999999997 9999999873 22
Q ss_pred CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHH
Q psy10487 304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVV 383 (610)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~ 383 (610)
... .... .+......+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.+.............+..+..
T Consensus 258 ~~~--~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~---- 330 (524)
T 2ec8_A 258 KYN--SWHH-GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGEN---- 330 (524)
T ss_dssp EEE--EEEC-SSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCC----
T ss_pred ccc--cccc-cCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCc----
Confidence 111 1111 111224557999999999999999999999999998899998853322111111111222222222
Q ss_pred HHHHhheeEEEEEEeeecc--c-ccccccCCcccc----ccccc------cccceeeeeeeeccCcceeeeecCCCccee
Q psy10487 384 SVIVSIGMSFCVCRAHEHK--N-KRRKRKGKMKQS----VSFND------QEKKLLDVSITTTDRHTGSCEALGSQPDME 450 (610)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~----~~~~~------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 450 (610)
+.+.|...+.+ . ..|.+.+..-.. ..... ....|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 331 --------v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~ 402 (524)
T 2ec8_A 331 --------VDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA 402 (524)
T ss_dssp --------EEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred --------EEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEE
Confidence 12333333333 3 334332221100 00011 245899999999999999999999999999
Q ss_pred eeeecccccCCCcceeEecCCCCCc---ccccCCCc-ccccC
Q psy10487 451 LIEQSLAMEQPPVHITIESHAVDPQ---VSVFPPPP-EFSSN 488 (610)
Q Consensus 451 ~~~~l~v~~~pp~~i~ie~~~~~~l---~~~~P~pp-ef~~~ 488 (610)
..+.|.|..+|.+....+...+ .| +.++|+|- .|..+
T Consensus 403 ~~~~l~V~~~P~i~~~~~~~~g-~l~C~~~g~P~p~i~W~~~ 443 (524)
T 2ec8_A 403 IAFNVYVNTKPEILTYDRLVNG-MLQCVAAGFPEPTIDWYFC 443 (524)
T ss_dssp EEEEEEECEEEEEEEEECCSSS-CEEEEEEEESCCEEECCCC
T ss_pred EEEEEEEecCCeEeecccCcCc-EEEEEEEeecCCEEEEEEC
Confidence 9999988765444333322222 44 77888887 77754
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=190.19 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=132.4
Q ss_pred cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy10487 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN 137 (610)
Q Consensus 58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls 137 (610)
+.++.+++.++.++.... .+|+.|+|++|.|..+.+.+|.++++|++|+|++|+|..+.+..|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~ip~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP-----TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCSSCCSCCC-----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCcCCCCCC-----CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 468889999999986543 489999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487 138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 138 ~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~ 213 (610)
+|.++.++...|.++++|+.|+|++|++..+.+..|..+.+|+.|+|++|.+..+....|..+++|+.|++++|.+
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 9999999988899999999999999999988887888888888888888888777766666666777776666654
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=7.8e-19 Score=193.59 Aligned_cols=164 Identities=20% Similarity=0.207 Sum_probs=137.6
Q ss_pred CCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcC
Q psy10487 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY 103 (610)
Q Consensus 24 Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~ 103 (610)
|+.+|.|.. .+.++|.+++++.+|..++.++++|+|++|.|+.+++..|. ++++|++|+|++|.|+.+.+++|.+
T Consensus 24 ~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 24 SMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLF 98 (562)
T ss_dssp ------------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTTTT
T ss_pred cccccccCC---CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCHHHhCC
Confidence 445577774 37899999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccC-cCcCCCCCCccEEEccCccccccCHHHhhcCccc--c
Q psy10487 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR-AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL--E 180 (610)
Q Consensus 104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~ 180 (610)
+++|++|||++|+|+.++.. .+++|++|+|++|.++.+. +..|.++++|+.|+|++|++.... +..+.+| +
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~ 172 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLS 172 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEE
T ss_pred CCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceee
Confidence 99999999999999998865 7899999999999999976 367999999999999999998753 4445555 9
Q ss_pred ccccccccc--cccCccccc
Q psy10487 181 SLNLNGNRL--KHLSESVFF 198 (610)
Q Consensus 181 ~L~L~~n~l--~~~~~~~~~ 198 (610)
.|++++|.+ ....+..+.
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEE
T ss_pred EEEeecccccccccCccccc
Confidence 999999988 555444443
No 51
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.78 E-value=2.2e-19 Score=171.62 Aligned_cols=183 Identities=19% Similarity=0.237 Sum_probs=122.2
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEec-CCCCCeEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV-TDLDAGEY 337 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y 337 (610)
.+|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+............+ ....|.|.++ +.+|+|.|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~~d~G~Y 79 (212)
T 2yd6_A 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG-----SGSVLRIQPLRTPRDEAIY 79 (212)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGG-----TEEEEEECSCCTTTTCEEE
T ss_pred CCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCC-----CceEEEEeccCCCCCCeEE
Confidence 46888888899999999999999999999999999999999887544322222211 1357999999 59999999
Q ss_pred EEEeecCCcceeEEEEEEcCcccc----ccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCC
Q psy10487 338 TCYAENIRGNASGEISLDLPEINL----ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGK 411 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 411 (610)
+|.|.|..|.....+.|.|..... .|.+...+....+..+.. +.+.|...+.+ ...|.+.+.
T Consensus 80 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~------------v~l~C~~~g~p~p~v~W~~~g~ 147 (212)
T 2yd6_A 80 ECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT------------ATMLCAASGNPDPEITWFKDFL 147 (212)
T ss_dssp EEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSC------------EEEEEEEECSSCCEEEEEETTE
T ss_pred EEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCC------------EEEEEEecCCCCCeEEEEECCc
Confidence 999999999988888888854321 133333333333222222 12333333322 223332211
Q ss_pred cc------cccc--ccccccceeeeeeeeccCcceeeeecCCCcceeee-eecccc
Q psy10487 412 MK------QSVS--FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI-EQSLAM 458 (610)
Q Consensus 412 ~~------~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v~ 458 (610)
.- ..+. .......|.|.+++.+|+|.|+|.|.|..|....+ +.|.+.
T Consensus 148 ~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~ 203 (212)
T 2yd6_A 148 PVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203 (212)
T ss_dssp EC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred cccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence 10 1111 11234789999999999999999999999987654 444443
No 52
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.77 E-value=5.8e-19 Score=168.61 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=123.3
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC-CCCeEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD-LDAGEY 337 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y 337 (610)
.+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.............+ ....|.|.+++. +|+|.|
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~~d~G~Y 80 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG----GISILRIEPVRAGRDDAPY 80 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETT----TEEEEEESSCCTTTTCSEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCC----CeEEEEEEecCCCCcCceE
Confidence 478889999999999999999999999999999999999998863322222111111 125899999999 999999
Q ss_pred EEEeecCCcc-eeEEEEEEcCcccc----ccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccC
Q psy10487 338 TCYAENIRGN-ASGEISLDLPEINL----ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKG 410 (610)
Q Consensus 338 ~C~a~N~~G~-~~~~~~L~V~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 410 (610)
+|.|.|..|. .+..+.|.|..... .|.+...+....+..+..+ .+.|.....+ ...|.+..
T Consensus 81 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v------------~l~C~~~g~p~p~i~W~~~~ 148 (212)
T 2yd1_A 81 ECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTV------------LMTCKAIGNPTPNIYWIKNQ 148 (212)
T ss_dssp EEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCE------------EECCEEECSSCCEEEEEETT
T ss_pred EEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeE------------EEEEEeccCCCCeEEEEECC
Confidence 9999999998 77888888854321 1334333333333222222 2222222222 22222211
Q ss_pred Ccc--ccccccccccceeeeeeeeccCcceeeeecCCCcceeee-eeccccc
Q psy10487 411 KMK--QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI-EQSLAME 459 (610)
Q Consensus 411 ~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v~~ 459 (610)
..- ........++.|.|.+++.+|+|.|+|.|.|..|..+.. +.|.|.+
T Consensus 149 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~ 200 (212)
T 2yd1_A 149 TKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200 (212)
T ss_dssp EECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred eEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence 110 001112335589999999999999999999999998765 6776654
No 53
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.77 E-value=3.9e-19 Score=167.32 Aligned_cols=186 Identities=16% Similarity=0.089 Sum_probs=123.2
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.............+ ....|.|.+++.+|+|.|+
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~ 78 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG----GYHQLIIASVTDDDATVYQ 78 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETT----TEEEEEECSCCGGGCSEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCC----CEEEEEECcCCHHhCEEEE
Confidence 368888888899999999999999999999999999999998875432222111111 1238999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCcccc--ccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCc---c
Q psy10487 339 CYAENIRGNASGEISLDLPEINL--ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKM---K 413 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 413 (610)
|.|.|..|.....+.|.|...+. .|.....+....+..+..+. +.|.....+.+...|.+.... .
T Consensus 79 C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~----------l~C~~~g~p~p~i~W~~~~~~~~~~ 148 (197)
T 2j8h_A 79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS----------IKIPFSGKPDPVITWQKGQDLIDNN 148 (197)
T ss_dssp EEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCE----------EEEEEEEESCCEEEEEESSCEECSS
T ss_pred EEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEE----------EEEEEEecCCCcEEEEECCEEeecC
Confidence 99999999988888888843221 11111111112222111111 122222222223333332211 1
Q ss_pred ccc--cccccccceeeee-eeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 414 QSV--SFNDQEKKLLDVS-ITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 414 ~~~--~~~~~~~~L~i~~-v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
... ........|.|.+ ++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 149 ~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp SSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 111 1123456899999 99999999999999999999888888775
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=1.1e-18 Score=177.53 Aligned_cols=193 Identities=17% Similarity=0.286 Sum_probs=140.4
Q ss_pred CCCCCCCCCCeeCcc----------CCCcEEEcCCCCCC---ccCcccC--CCccEEEeec-CCCCCCChhhhcccCCCC
Q psy10487 19 PDWTDCPDTCRCKWT----------LGKKSALCKDANFT---ALPSTLD--SDIQVLDLNN-NKISYLTKEAFKSIGLLN 82 (610)
Q Consensus 19 ~~~~~Cp~~C~C~~~----------~~~~~~~C~~~~l~---~lP~~l~--~~L~~L~L~~-n~i~~l~~~~~~~~~l~~ 82 (610)
..|..-..+|.|.|. .....++..+.+++ .+|..+. .+|++|+|++ |.+....+..|. ++++
T Consensus 25 ~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~ 102 (313)
T 1ogq_A 25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQ 102 (313)
T ss_dssp TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTT
T ss_pred cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCC
Confidence 467544445765563 11234555555665 4665553 4788888884 777765566666 6788
Q ss_pred ccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCC-CccEEEcc
Q psy10487 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLP-YLKTIELQ 161 (610)
Q Consensus 83 L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~L~ 161 (610)
|++|+|++|.+....+..|..+++|++|+|++|++....+..|..+++|++|+|++|.++...+..|..+. +|+.|+|+
T Consensus 103 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 88888888888866677788888888888888888866667788888888888888888765565677776 78888888
Q ss_pred CccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~ 214 (610)
+|++....+..|..+. |+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 183 ~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 8888766677777776 888888888888777777778888888888888764
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=1.7e-18 Score=190.26 Aligned_cols=200 Identities=19% Similarity=0.341 Sum_probs=158.0
Q ss_pred cEEEcCCCCCCccCccc---CCCccEEEeecCCCCCCChh---hhcccCCCCccEEEcccCCCcccch--hhhcCCCCCc
Q psy10487 37 KSALCKDANFTALPSTL---DSDIQVLDLNNNKISYLTKE---AFKSIGLLNLQRIYLKNSGIREVHR--DTFKYLTILV 108 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l---~~~L~~L~L~~n~i~~l~~~---~~~~~~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~ 108 (610)
+.++..+++++.+|..+ ..+|++|+|++|.+....+. .+. .+++|++|+|++|.++.+.. ..|..+++|+
T Consensus 313 ~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG--AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp CEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT--SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred eEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhh--ccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 56777777888888654 46889999999988764321 233 57889999999998888754 5688889999
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCc-----------------CCCCCCccEEEccCccccccCHH
Q psy10487 109 EVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ-----------------FPKLPYLKTIELQHCQIHSVHKD 171 (610)
Q Consensus 109 ~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-----------------~~~l~~L~~L~L~~n~l~~~~~~ 171 (610)
+|+|++|+++.++. .+..+++|++|+|++|.++.++... +..+++|+.|+|++|+|+.++.
T Consensus 391 ~L~Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~- 468 (549)
T 2z81_A 391 SLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD- 468 (549)
T ss_dssp EEECTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-
T ss_pred EEECCCCCCccCCh-hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-
Confidence 99999999887764 5677788888888888776654321 1367899999999999998864
Q ss_pred HhhcCccccccccccccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhcc-CCCCCCCCCCC
Q psy10487 172 ALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSK-LYSHPLSCTEP 241 (610)
Q Consensus 172 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~-l~~~~~~C~a~ 241 (610)
...+++|+.|+|++|+++++++..+..+++|+.|++++|+|.|+|. +.++..|+.... ...+.+.|..+
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~~~ 539 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 539 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCCBBTTT
T ss_pred -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCCeECCC
Confidence 3578999999999999999999889999999999999999999998 577778987543 35567888765
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=200.94 Aligned_cols=165 Identities=25% Similarity=0.322 Sum_probs=143.6
Q ss_pred CCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccC-CCcccchhhhcCCC
Q psy10487 27 TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS-GIREVHRDTFKYLT 105 (610)
Q Consensus 27 ~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n-~l~~i~~~~f~~l~ 105 (610)
.|.|. ...++|.+.+++.+|. ++.++++|+|++|.|+.+.+..|. ++.+|++|+|++| .+..+.+.+|.+++
T Consensus 1 ~C~~~----~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~ 73 (844)
T 3j0a_A 1 SCSFD----GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLP 73 (844)
T ss_dssp CCBTT----TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCT
T ss_pred CceEe----ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCC
Confidence 37776 3689999999999998 999999999999999999888888 7999999999999 46677788999999
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCc--CcCCCCCCccEEEccCccccccCH-HHhhcCcccccc
Q psy10487 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA--GQFPKLPYLKTIELQHCQIHSVHK-DALIHLTALESL 182 (610)
Q Consensus 106 ~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 182 (610)
+|++|+|++|+|..+.+..|.++.+|++|+|++|.++...+ ..|.++++|+.|+|++|.+..+.+ ..|.++++|+.|
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 99999999999999988999999999999999999987433 348899999999999999988754 568889999999
Q ss_pred ccccccccccCccccc
Q psy10487 183 NLNGNRLKHLSESVFF 198 (610)
Q Consensus 183 ~L~~n~l~~~~~~~~~ 198 (610)
+|++|.++.+.+..+.
T Consensus 154 ~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELE 169 (844)
T ss_dssp EEESSCCCCCCSGGGH
T ss_pred ECCCCcCCeeCHHHcc
Confidence 9999988776554443
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=199.20 Aligned_cols=214 Identities=30% Similarity=0.419 Sum_probs=133.3
Q ss_pred cEEEcCCCCCCccCcc-c--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDANFTALPST-L--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~-l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
+.++..++.+..++.. + ..+|+.|+|++|.|+.+.+..|. ++.+|++|+|++|.+..+.+.+|.++++|++|+|+
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 4566666666655432 2 23667777777777766666665 56666777776666666666666666666666666
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCccccccC------------------------------------------------
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELR------------------------------------------------ 145 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~------------------------------------------------ 145 (610)
+|+|..+++..|.++++|+.|+|++|.++.+.
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence 66666666555665666666655555544321
Q ss_pred ----------------------------------------------cCcCCCCCCccEEEccCccccccCHHHhhcCccc
Q psy10487 146 ----------------------------------------------AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL 179 (610)
Q Consensus 146 ----------------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (610)
+..|.++++|+.|+|++|+|+.+.+..|..+++|
T Consensus 427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 506 (844)
T 3j0a_A 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506 (844)
T ss_dssp TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence 0113334445555555555555555555566666
Q ss_pred cccccccccccccCccccc-------------------CCCcccEEecCCCcccccCCchhhHHHHhhccC----CCCCC
Q psy10487 180 ESLNLNGNRLKHLSESVFF-------------------PTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL----YSHPL 236 (610)
Q Consensus 180 ~~L~L~~n~l~~~~~~~~~-------------------~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~l----~~~~~ 236 (610)
+.|+|++|+++.+++..+. .+.+|+.+++++|+|.|+|.+.||..|+..... ....+
T Consensus 507 ~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~ 586 (844)
T 3j0a_A 507 RGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADI 586 (844)
T ss_dssp SEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGC
T ss_pred heeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccC
Confidence 6666666666655543321 123567788899999999999999999876442 23467
Q ss_pred CCCCCCccCCCccccc
Q psy10487 237 SCTEPGMLQTKHWDDV 252 (610)
Q Consensus 237 ~C~a~~~l~g~~~~~v 252 (610)
.|..|..+.|..+.++
T Consensus 587 ~C~~p~~~~g~~l~~~ 602 (844)
T 3j0a_A 587 YCVYPDSFSGVSLFSL 602 (844)
T ss_dssp CCSSCSSSCSCCTTTC
T ss_pred ccCCchhhCCCccccC
Confidence 8998888777665544
No 58
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.76 E-value=7.7e-19 Score=164.97 Aligned_cols=183 Identities=16% Similarity=0.179 Sum_probs=122.6
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............ ....|.|.+++.+|+|.|+
T Consensus 6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~ 79 (197)
T 3lcy_A 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDG------RTHTLTVMTEEQEDEGVYT 79 (197)
T ss_dssp EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESS------SEEEEEEECCSGGGCEEEE
T ss_pred CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCC------CEEEEEEecCCccCCEEEE
Confidence 4688888888999999999999999999999999999999988655432222111 1248999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee--cccccccccCCc---c
Q psy10487 339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE--HKNKRRKRKGKM---K 413 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~ 413 (610)
|.|.|..|.....+.|.|...+.............+..+.. +.+.|.... .+...|.+.... .
T Consensus 80 C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~------------~~l~C~~~~~p~p~v~W~~~~~~~~~~ 147 (197)
T 3lcy_A 80 CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGST------------LRLHVMYIGRPVPAMTWFHGQKLLQNS 147 (197)
T ss_dssp EEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSC------------EEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred EEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCe------------EEEEEEEeeeeCCeeEEeECCEECCCC
Confidence 99999999988888888843322211111111111111111 122333333 233333322111 1
Q ss_pred ccccc--cccccceeeeeeee-ccCcceeeeecCCCcceeeeeeccccc
Q psy10487 414 QSVSF--NDQEKKLLDVSITT-TDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 414 ~~~~~--~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
..... ......|.|.+++. +|+|.|+|.|.|..|..+..+.+.|.+
T Consensus 148 ~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 148 ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp SSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 11111 12226799999985 899999999999999999888887765
No 59
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=189.43 Aligned_cols=234 Identities=12% Similarity=0.113 Sum_probs=142.8
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.|..+......+... +..+|.+ .+....+.+|+.+.|.|.+. |.|.|.|+|++++..+........
T Consensus 201 ~d~G~Y~C~A~N~~G~~~~~~~~l~-V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~ 277 (527)
T 3qs9_E 201 LFGTDIRCCARNELGRECTRLFTID-LNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEM 277 (527)
T ss_dssp CCSSCEEEEEECSSCEEEEECEEEE-SSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEE
T ss_pred cCCEEEEEEEEeCCCcccceEEEEE-EeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeee
Confidence 4678999999887664433222222 2234444 45678889999999999996 999999999999987765432111
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCC--cceeehhhhHHHHHHHHH
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTD--SWYMLVLGISVCVVSVIV 387 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~ 387 (610)
.....+......+.|.|.+++.+|+|.|+|.|.|. ....+.|.|.+. |.+...+ ....+..+..+.
T Consensus 278 ~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~---p~i~~~~~~~~~~v~~G~~v~------ 345 (527)
T 3qs9_E 278 STYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEK---GFINATNSSEDYEIDQYEEFC------ 345 (527)
T ss_dssp EEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC-----CEEECCCSCCEECCCTTCCCC------
T ss_pred eeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEcc---CccccccCcccEEEcCCCeEE------
Confidence 11111112234568999999999999999999998 677788887432 2222211 111121111111
Q ss_pred hheeEEEEEEeeecccccccccCCcc-ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCccee
Q psy10487 388 SIGMSFCVCRAHEHKNKRRKRKGKMK-QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHIT 466 (610)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~~i~ 466 (610)
+.|.....+.+...|.+.+..- ........+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+ .
T Consensus 346 ----L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i--~ 419 (527)
T 3qs9_E 346 ----FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--L 419 (527)
T ss_dssp ----EEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEE--E
T ss_pred ----EEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeE--E
Confidence 2333333333333343322110 00011124567999999999999999999999999999999998865433 2
Q ss_pred EecCCCC--Cc-ccccCCCc-ccc
Q psy10487 467 IESHAVD--PQ-VSVFPPPP-EFS 486 (610)
Q Consensus 467 ie~~~~~--~l-~~~~P~pp-ef~ 486 (610)
.... +. .| +.++|+|- .|.
T Consensus 420 ~~~~-~~~l~C~a~g~P~p~i~W~ 442 (527)
T 3qs9_E 420 AEAS-ASQASCFSDGYPLPSWTWK 442 (527)
T ss_dssp ECCC-CE---EEEECSSCCEEEEE
T ss_pred EeCC-CCEEEEEEEEEcCCeEEEE
Confidence 2221 12 33 77888766 665
No 60
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.76 E-value=1.9e-18 Score=172.54 Aligned_cols=182 Identities=21% Similarity=0.270 Sum_probs=125.7
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............ ..+.|.|.+++.+|+|.|+
T Consensus 4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~ 77 (284)
T 2rik_A 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVE------NTATLTVLKVTKGDAGQYT 77 (284)
T ss_dssp CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEET------TEEEEEESSCCGGGCEEEE
T ss_pred CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcC------CEEEEEEecCCcccCEEEE
Confidence 5788888899999999999999999999999999999999988765432222211 1358999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccccccccCCc-ceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCCcc--
Q psy10487 339 CYAENIRGNASGEISLDLPEINLATTLSKTDS-WYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGKMK-- 413 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 413 (610)
|.|.|..|..+..+.|.|... |.+..... ...+..+.. +.+.|...+. +...|.+.+..-
T Consensus 78 C~~~n~~g~~~~~~~l~V~~~---p~~~~~~~~~~~v~~g~~------------~~l~C~~~g~p~~~v~W~~~~~~~~~ 142 (284)
T 2rik_A 78 CYASNVAGKDSCSAQLGVQEP---PRFIKKLEPSRIVKQDEH------------TRYECKIGGSPEIKVLWYKDETEIQE 142 (284)
T ss_dssp EEEEETTEEEEEEEEEEEECC---CEEEECCCSEEEEETTCC------------EEEEEEEESSSCCEEEEEETTEECCC
T ss_pred EEEEECCceEEEEEEEEccCC---CcccccCCCceEecCCce------------EEEEEEEeeeCCCEEEEEECCEECcC
Confidence 999999999988999888432 22222211 111111111 1223333322 222332221110
Q ss_pred -c--cccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 414 -Q--SVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 414 -~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
. ..........|.|.+++.+|+|.|+|.|.|..|..+....|.|.++|
T Consensus 143 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 193 (284)
T 2rik_A 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP 193 (284)
T ss_dssp SSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred CCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence 0 11122345679999999999999999999999999888888877643
No 61
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.76 E-value=3.9e-19 Score=177.59 Aligned_cols=205 Identities=17% Similarity=0.228 Sum_probs=134.3
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeee-cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKE-SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~-~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+..+.. ...+... +..+|.+.... ....+.+|+.+.|.|.+.|.|.|.+.|++++..+........
T Consensus 71 ~d~G~Y~C~~~n~~g~~-~~~~~l~-V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~ 148 (284)
T 2rik_A 71 GDAGQYTCYASNVAGKD-SCSAQLG-VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM 148 (284)
T ss_dssp GGCEEEEEEEEETTEEE-EEEEEEE-EECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEE
T ss_pred ccCEEEEEEEEECCceE-EEEEEEE-ccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEE
Confidence 36778999887654321 1222222 23456655443 455688999999999999999999999999998876543222
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI 389 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (610)
.... ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+ +|.+...+....+..+..+
T Consensus 149 ~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~v--------- 210 (284)
T 2rik_A 149 SFVE------SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE---PPVFRKKPHPVETLKGADV--------- 210 (284)
T ss_dssp EEET------TEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---CCBCCSCCCCEEECTTCCE---------
T ss_pred EEcC------CEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec---CCcceeCCCcceecCCCeE---------
Confidence 2111 235899999999999999999999999999999998843 3444444433333322221
Q ss_pred eeEEEEEEeeecc--cccccccCCc---ccccc--ccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 390 GMSFCVCRAHEHK--NKRRKRKGKM---KQSVS--FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 390 ~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
.+.|...+.+ ...|.+.+.. ..... .......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 211 ---~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 211 ---HLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp ---EEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ---EEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 2233333222 2222221110 11111 11223579999999999999999999999999988887764
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=190.88 Aligned_cols=201 Identities=23% Similarity=0.440 Sum_probs=165.7
Q ss_pred cEEEcCCCCCCcc---Cccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccch-hhhcCCCCCcEE
Q psy10487 37 KSALCKDANFTAL---PSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVEV 110 (610)
Q Consensus 37 ~~~~C~~~~l~~l---P~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~-~~f~~l~~L~~L 110 (610)
+.++..+++++.+ |..+ ..+|++|+|++|.+..++.. |. ++++|++|++++|.+..+.+ ..|..+++|++|
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc--ccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 4566666666544 2222 24677888888877776655 55 68888888888888877655 568899999999
Q ss_pred EccCCCCCCCCcccccCCCCCcEEEeeCcccc-ccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccc
Q psy10487 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT-ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189 (610)
Q Consensus 111 dLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 189 (610)
+|++|++....+..|.++++|+.|+|++|.++ ...+..|..+++|+.|+|++|+++.+.+..|..+++|+.|++++|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 99999999888888999999999999999997 34456789999999999999999999888999999999999999999
Q ss_pred cccCcccccCCCcccEEecCCCcccccCCchhhH-HHHhhcc--CCCCCCCCCCC
Q psy10487 190 KHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFR-NWLLKSK--LYSHPLSCTEP 241 (610)
Q Consensus 190 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~-~~l~~~~--l~~~~~~C~a~ 241 (610)
+++++..|..+++|+.|++++|+|.|+|...++. .|+.... +.... .|..+
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred CCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence 9999888999999999999999999999999887 9988643 22223 88776
No 63
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.76 E-value=6.3e-18 Score=158.93 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=121.7
Q ss_pred CCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCc--cceee-ccCCceeeeeeEEEEEecCCCCCe
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSF--DLLEE-EEGDALFEKSVSITLFNVTDLDAG 335 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~--~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G 335 (610)
+|.+...+..+.+.+|++++|.|.+. |.|.|.+.|+++|..+..... .+... .++.......+.|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 57788889999999999999999999 999999999999999876532 11111 111122223579999999999999
Q ss_pred EEEEEeecCCcceeE-EEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccc
Q psy10487 336 EYTCYAENIRGNASG-EISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQ 414 (610)
Q Consensus 336 ~Y~C~a~N~~G~~~~-~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (610)
.|+|.|.|..|.... .+.|.|.. +|.+...+....+..+.. +.+.|...+.+......|.+.+.
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~p~~v~W~~~~~ 146 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLEG---LPYFLEEPEDRTVAANTP------------FNLSCQAQGPPEPVDLLWLQDAV 146 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEECC---SCEEEECCCCEEECTTCC------------EEEEEEEECSSCCCEEEEEESSC
T ss_pred EEEEEEEeCCCceecccEEEEEec---CCeEEcCCCcEEEcCCCE------------EEEEeECCCCCCCCEEEEEECCE
Confidence 999999999887543 47888743 344444443333332222 13344444333221122222222
Q ss_pred ccccc---ccccceeeeeeeeccCcceeeeecCCCccee-eeeeccc
Q psy10487 415 SVSFN---DQEKKLLDVSITTTDRHTGSCEALGSQPDME-LIEQSLA 457 (610)
Q Consensus 415 ~~~~~---~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v 457 (610)
.+... .....|.|.+++ |+|.|+|.|.|..|..+ ..+.|.|
T Consensus 147 ~~~~~~~~~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 147 PLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp BSSSSTTSSCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred eccCCCCcCCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 22111 356689999887 89999999999999886 6777777
No 64
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=4.7e-18 Score=167.17 Aligned_cols=155 Identities=26% Similarity=0.334 Sum_probs=145.2
Q ss_pred CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487 56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY 135 (610)
Q Consensus 56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~ 135 (610)
+.++++++++.++.++.... .+|+.|+|++|.+..+.+.+|.++++|++|+|++|+|..+.+..|.++++|++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCccccCCCCC-----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 56789999999999986543 4899999999999999999999999999999999999999999999999999999
Q ss_pred eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487 136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
|++|.++.+.+..|..+++|+.|+|++|+|+.+.+..|..+.+|+.|+|++|+|+.++...|..+++|+.|++++|.+..
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999999999899999999999999999999988888999999999999999999999889999999999999998763
No 65
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.76 E-value=4.6e-19 Score=186.36 Aligned_cols=209 Identities=18% Similarity=0.194 Sum_probs=137.2
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCC-----CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACP-----PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~-----P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~ 305 (610)
.+.+.|+|.+.+..+......+.......+ +.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....
T Consensus 187 ~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~ 266 (403)
T 3laf_A 187 GDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRS 266 (403)
T ss_dssp GGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSS
T ss_pred ccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCC
Confidence 367889998877654333222222222111 223445667788899999999999999999999999998876544
Q ss_pred ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHH
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSV 385 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 385 (610)
....... .+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.. +|.+...+....+..+..+.
T Consensus 267 ~~~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~v~---- 331 (403)
T 3laf_A 267 KKYSLLG--------GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV---PPWFLNHPSNLYAYESMDIE---- 331 (403)
T ss_dssp SSEEEET--------TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE---EEEEEECCCCEECCTTCCEE----
T ss_pred ceEEECC--------ccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC---CCcEeecCcceEEecCCeEE----
Confidence 3222221 24899999999999999999999999999999998843 33444333333332222211
Q ss_pred HHhheeEEEEEEeeecccccccccCCc--cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487 386 IVSIGMSFCVCRAHEHKNKRRKRKGKM--KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ 460 (610)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~ 460 (610)
+.|.....+.+...|.+.+.. .........++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++
T Consensus 332 ------l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P 402 (403)
T 3laf_A 332 ------FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402 (403)
T ss_dssp ------ECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred ------EEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence 122222222222233322211 111111234567999999999999999999999999999999988763
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=6.2e-18 Score=168.22 Aligned_cols=169 Identities=24% Similarity=0.332 Sum_probs=151.6
Q ss_pred CeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCC
Q psy10487 28 CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTIL 107 (610)
Q Consensus 28 C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L 107 (610)
..|.|.. ..+.|.. +.+.++++++.++.++.... .+|++|+|++|.|..+.+.+|.++++|
T Consensus 3 ~~C~~~~--~~C~c~~------------~~~~l~~~~~~l~~ip~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L 63 (270)
T 2o6q_A 3 ALCKKDG--GVCSCNN------------NKNSVDCSSKKLTAIPSNIP-----ADTKKLDLQSNKLSSLPSKAFHRLTKL 63 (270)
T ss_dssp CCBGGGT--CSBEEET------------TTTEEECTTSCCSSCCSCCC-----TTCSEEECCSSCCSCCCTTSSSSCTTC
T ss_pred ccCCCCC--CCCEeCC------------CCCEEEccCCCCCccCCCCC-----CCCCEEECcCCCCCeeCHHHhcCCCCC
Confidence 4577752 4566653 45789999999999886432 479999999999999999999999999
Q ss_pred cEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487 108 VEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN 187 (610)
Q Consensus 108 ~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 187 (610)
++|+|++|+|..++...|.++++|++|+|++|.++.+....|..+++|+.|+|++|+++.+.+..|..+++|+.|+|++|
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 99999999999999999999999999999999999999888999999999999999999998888999999999999999
Q ss_pred cccccCcccccCCCcccEEecCCCcccc
Q psy10487 188 RLKHLSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 188 ~l~~~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
.++.++...|..+++|+.|++++|.+..
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCccCHhHccCCcccceeEecCCcCcE
Confidence 9999998889999999999999998653
No 67
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.75 E-value=9.5e-19 Score=183.35 Aligned_cols=203 Identities=18% Similarity=0.236 Sum_probs=131.4
Q ss_pred CCCCCCCCCCCCccCCCccccccc--------ccccCCCceee-eecceEeecCceEEEEEEEEecCCCeEEEEeC-CEE
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKA--------QEFACPPNVTI-KESMVIREAGGNVTMSCYVYGDPEPTILWLLN-GQV 300 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~--------~~~~c~P~i~~-~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~-g~~ 300 (610)
.+.+.|+|.+.+............ .....+|.+.. .+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..
T Consensus 167 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~ 246 (384)
T 3kld_A 167 SDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKP 246 (384)
T ss_dssp GGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCC
T ss_pred HHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcc
Confidence 467889999887654332111000 00012344433 34567788999999999999999999999995 444
Q ss_pred eccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHH
Q psy10487 301 LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISV 380 (610)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~ 380 (610)
+..... .. ...+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.+........+..+..
T Consensus 247 ~~~~~~--~~--------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~---~P~~~~~~~~~~v~~g~~- 312 (384)
T 3kld_A 247 IARKAR--RH--------KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA---QPNWVQIINDIHVAMEES- 312 (384)
T ss_dssp CCTTCE--EC--------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE---EEEEEECCCCEEECTTCC-
T ss_pred ccccce--ec--------CCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec---CCccccCCCceEecCCCC-
Confidence 432211 11 1134899999999999999999999999999888888843 334433333333332222
Q ss_pred HHHHHHHhheeEEEEEEee--ecccccccccCCccc-cccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 381 CVVSVIVSIGMSFCVCRAH--EHKNKRRKRKGKMKQ-SVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
+.+.|... +.+...|.+.+..-. .-.....++.|.|.++..+|+|.|+|.|.|..|.+..++.|.|
T Consensus 313 -----------v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 381 (384)
T 3kld_A 313 -----------VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381 (384)
T ss_dssp -----------EEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred -----------EEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEE
Confidence 12333333 333334433322110 0011234568999999999999999999999999999999987
Q ss_pred c
Q psy10487 458 M 458 (610)
Q Consensus 458 ~ 458 (610)
.
T Consensus 382 ~ 382 (384)
T 3kld_A 382 I 382 (384)
T ss_dssp C
T ss_pred e
Confidence 6
No 68
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.75 E-value=5e-18 Score=156.44 Aligned_cols=116 Identities=28% Similarity=0.489 Sum_probs=92.5
Q ss_pred CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhh
Q psy10487 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101 (610)
Q Consensus 22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f 101 (610)
+.||..|.|.+ ..++|++++++++|..++.++++|+|++|.|+.+.+..|. ++.+|++|+|++|+|+.+++..|
T Consensus 1 ~~CP~~C~C~~----~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 1 MACPSQCSCSG----TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp -CCC-CCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTT
T ss_pred CcCcCcCCcCC----CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhc
Confidence 37999999986 5899999999999998889999999999999988887776 67788888888888887777777
Q ss_pred cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccc
Q psy10487 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143 (610)
Q Consensus 102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~ 143 (610)
.++++|++|+|++|+|+.+++..|..+++|++|+|++|++..
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 777777777777777777776667666677777666666543
No 69
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.75 E-value=1.5e-18 Score=162.59 Aligned_cols=170 Identities=16% Similarity=0.194 Sum_probs=113.9
Q ss_pred CCceeeeecceEeec-CceEEEEEEEEecCC--CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487 260 PPNVTIKESMVIREA-GGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~-G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 336 (610)
+|.+.. +....+.+ |+.++|.|.+.|.|. +.+.|++++..+...... ...+.|.|.+++.+|+|.
T Consensus 3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~-----------~~~~~L~i~~~~~~d~G~ 70 (190)
T 2wv3_A 3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-----------ASNMEYRINKPRAEDSGE 70 (190)
T ss_dssp CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC-----------CSEEEEEESSCCGGGCEE
T ss_pred CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE-----------eccEEEEEecCCcccCEE
Confidence 566665 44455555 999999999999987 889999999988754421 123689999999999999
Q ss_pred EEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--ccccccc--CC-
Q psy10487 337 YTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRK--GK- 411 (610)
Q Consensus 337 Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~- 411 (610)
|+|.|.|. |.....+.|.|.. +|.+...+....+..+..+ .+.|...+.+ ...|.+. +.
T Consensus 71 Y~C~~~n~-~~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~v------------~l~C~~~g~p~p~i~W~~~~~g~~ 134 (190)
T 2wv3_A 71 YHCVYHFV-SAPKANATIEVKA---APDITGHKRSENKNEGQDA------------MMYCKSVGYPHPEWMWRKKENGVF 134 (190)
T ss_dssp EEEEEEET-TEEEEEEEEEEEC---CCEEEEECSEEEEETTSCE------------EEEEEEECSSCCEEEEEEEETTEE
T ss_pred EEEEEEeC-CcccccEEEEEec---CCcccccCCcceeeCCCcE------------EEEEEeCccCCCceEEEEcCCCce
Confidence 99999999 8888888888843 3344333332222222221 2233333222 2223221 00
Q ss_pred -----cccccccc--ccccceeeeeee-eccCcceeeeecCCCcceeeeeeccc
Q psy10487 412 -----MKQSVSFN--DQEKKLLDVSIT-TTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 412 -----~~~~~~~~--~~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
........ .....|.|.+++ .+|+|.|+|.|.|..|..+..+.|.|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V 188 (190)
T 2wv3_A 135 EEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188 (190)
T ss_dssp EECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEE
T ss_pred eeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEE
Confidence 11111111 222479999999 79999999999999999888877765
No 70
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=173.38 Aligned_cols=189 Identities=15% Similarity=0.159 Sum_probs=114.3
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC-CCCeEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD-LDAGEY 337 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y 337 (610)
.+|.|...+..+.+.+|+.++|.|.+.|.|.|.|.|+++|..+...........++ ....|.|.+++. +|+|.|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~-----~~~~L~i~~~~~~~D~G~Y 79 (304)
T 2yd9_A 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES-----AGAVLRIQPLRTPRDENVY 79 (304)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTT-----TEEEEEECSCCTTTTCSEE
T ss_pred cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCC-----CceEEEEecccccCCCeEE
Confidence 57889888999999999999999999999999999999998875443221111221 125899999998 999999
Q ss_pred EEEeecCCcceeEEEEEEcCccccc----cccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcc
Q psy10487 338 TCYAENIRGNASGEISLDLPEINLA----TTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMK 413 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (610)
+|.|.|..|.....+.|.|...... |.+...+....+..+..+.+.|.+.+.+...+.|.+.+..... ....
T Consensus 80 ~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~----~~~~ 155 (304)
T 2yd9_A 80 ECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP----SASN 155 (304)
T ss_dssp EEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCG----GGGT
T ss_pred EEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcC----CCCc
Confidence 9999999999888888888543221 3333333333333222222111111111112222211111000 0000
Q ss_pred ccccccccccceeeeeeeeccCcceeeeecCCCcceeee-eeccc
Q psy10487 414 QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI-EQSLA 457 (610)
Q Consensus 414 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v 457 (610)
.. .....++.|.|.+++.+|+|.|+|.|.|..|..... +.+.+
T Consensus 156 ~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v 199 (304)
T 2yd9_A 156 GR-IKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV 199 (304)
T ss_dssp TS-EEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ce-EEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEE
Confidence 00 112334589999999999999999999999976643 34433
No 71
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=166.65 Aligned_cols=177 Identities=12% Similarity=0.088 Sum_probs=111.9
Q ss_pred CceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
|.+.. +..+.+.+|+.+.|.|.+. +.|.|.|+|++||..+..+.+.....+... ....|.|.+++.+|+|.|+|
T Consensus 4 p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~----g~~~L~I~~v~~~D~G~Y~C 78 (207)
T 3rbs_A 4 PFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT----GIIEMFMEKLQDEDEGTYTF 78 (207)
T ss_dssp --CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTT----CEEEEEESCCCGGGCEEEEE
T ss_pred Ceeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCC----CEEEEEECCCChhhCEEEEE
Confidence 33433 4467889999999999996 579999999999999977655444332221 12379999999999999999
Q ss_pred EeecCCcceeEEEEEEcCcc-----------c-------cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec
Q psy10487 340 YAENIRGNASGEISLDLPEI-----------N-------LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH 401 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~~~-----------~-------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (610)
.|.| |.+...+.+.+... . .+|.+..... ..+..+.. +.+.|...+.
T Consensus 79 ~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~~v~~g~~------------v~l~C~v~g~ 143 (207)
T 3rbs_A 79 QLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECN------------VLLKCKVANI 143 (207)
T ss_dssp EEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEE-EEEETTTE------------EEEEEEEESC
T ss_pred EEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCC-cEEcCCCc------------EEEEEEEeCC
Confidence 9999 66655555432100 0 1233222221 11111111 1334443332
Q ss_pred ---ccccccccCCc---cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 402 ---KNKRRKRKGKM---KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 402 ---~~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
+...|.+.+.. ............|.|.+++.+|+|.|+|.|.|..|+++.++.|.+
T Consensus 144 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 144 KKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp CTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred CCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 33344332211 111122233457999999999999999999999999999988864
No 72
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.74 E-value=1.2e-17 Score=169.50 Aligned_cols=215 Identities=14% Similarity=0.067 Sum_probs=136.7
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.....+.....+... ...+|.+........+..|+.+.+.|.+. |.|.|.+.|++++..+......
T Consensus 89 ~D~G~Y~C~v~~~~~~~~~~~~~l~-v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~-- 165 (313)
T 4fqp_A 89 EDEGNYTCLFVTFPQGSRSVDIWLR-VLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV-- 165 (313)
T ss_dssp GGCEEEEEEEECSSSCEEEEEEEEC-CBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEE--
T ss_pred hhCEEEEEEEeeccCcceeeeeeee-eccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccccccee--
Confidence 3677899976433333322223222 23467777777777788899999999875 8899999999998877543321
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE--EEEEcCccccccccccC-CcceeehhhhHHHHHHHH
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE--ISLDLPEINLATTLSKT-DSWYMLVLGISVCVVSVI 386 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~--~~L~V~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~ 386 (610)
....++.+...+.|.|..+...|.|.|+|.|.|..|..... +.|.|. .+|.+... ........+..
T Consensus 166 -~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~---~~P~v~~~~~~~~~~~~g~~------- 234 (313)
T 4fqp_A 166 -PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY---YPPEVSISGYDNNWYLGQNE------- 234 (313)
T ss_dssp -ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC---EEEEEEEECCCSCEETTCCC-------
T ss_pred -eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc---cCCccccccccceeecCCCe-------
Confidence 11112233455689999999999999999999998876544 444442 23333221 11122222111
Q ss_pred HhheeEEEEEEeeecccccccccCCccccc--cccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCcc
Q psy10487 387 VSIGMSFCVCRAHEHKNKRRKRKGKMKQSV--SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVH 464 (610)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~~ 464 (610)
+.+.|...+.|.+....|.+.+..+ ....++..|.|.+++.+|+|.|+|.|.|..|+.+.++.|.|.+.||-+
T Consensus 235 -----v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP~~ 309 (313)
T 4fqp_A 235 -----ATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPPHH 309 (313)
T ss_dssp -----EEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC---
T ss_pred -----EEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCCCC
Confidence 1334554554433222333333322 123455689999999999999999999999999999999999888754
No 73
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.74 E-value=1.3e-18 Score=166.65 Aligned_cols=196 Identities=19% Similarity=0.177 Sum_probs=121.3
Q ss_pred cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc--eeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL--LEEEEGDALFEKSVSITLFNVTDLDAG 335 (610)
Q Consensus 258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G 335 (610)
..+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|+++|..+....... ....++ .....|.|.+++.+|+|
T Consensus 7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~----~~~~~l~i~~v~~~d~G 82 (217)
T 2vr9_A 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG----ALFFYRTMQGKKEQDGG 82 (217)
T ss_dssp CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTS----CEEESSCCBSSSCBCCE
T ss_pred cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCC----ceEEEEEeccCCcccCc
Confidence 357888888999999999999999999999999999999999887653211 111122 11224578899999999
Q ss_pred EEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHH-HhheeEEEEEEeeecccccccccCCcc
Q psy10487 336 EYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI-VSIGMSFCVCRAHEHKNKRRKRKGKMK 413 (610)
Q Consensus 336 ~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (610)
.|+|.|.|..|.. ...+.|.|... +|.+...+....+..+..+.+.|.+ .+.+...+.|.+.+.............
T Consensus 83 ~Y~C~~~n~~g~~~~~~~~l~v~~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~ 160 (217)
T 2vr9_A 83 EYWCVAKNRVGQAVSRHASLQIAVL--RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA 160 (217)
T ss_dssp EEEEEEEETTEEEECCCEEEEECEE--CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---C
T ss_pred eEEEEEecCCCccccccceEEEEEe--CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCccccccccc
Confidence 9999999999976 34566666422 2233333333333322222222222 222222333332222111000000001
Q ss_pred ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 414 QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 414 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
........++.|.|.+++.+|+|.|+|.|.|..|..+....++++.
T Consensus 161 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~ 206 (217)
T 2vr9_A 161 SSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206 (217)
T ss_dssp CCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred CCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence 1111123456799999999999999999999999988876666554
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=2.6e-17 Score=168.74 Aligned_cols=170 Identities=22% Similarity=0.370 Sum_probs=96.1
Q ss_pred cEEEcCCCCCCcc-CcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDANFTAL-PSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~~l~~l-P~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
+.++..+++++.+ |..+. .+|++|+|++|.|+.++...+ .+|++|++++|.+..+.+..|.++++|++|+++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-----KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-----ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 4556666666655 33332 356666666666665554332 356666666666666665556666666666666
Q ss_pred CCCCCC--CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccc
Q psy10487 114 DNQIAW--LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191 (610)
Q Consensus 114 ~n~l~~--l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 191 (610)
+|++.. +.+..|.++++|++|+|++|.++.++...+ ++|+.|+|++|++..+.+..|..+++|+.|+|++|.++.
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 666543 444555556666666666666555543322 455555665555555555555555555556665555555
Q ss_pred cCcccccCCCcccEEecCCCccc
Q psy10487 192 LSESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 192 ~~~~~~~~~~~L~~l~l~~N~~~ 214 (610)
+....+..+++|+.|++++|.+.
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS
T ss_pred eChhhccCCCCCCEEECCCCcCc
Confidence 55545555555555555555544
No 75
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.74 E-value=1.7e-18 Score=177.34 Aligned_cols=190 Identities=20% Similarity=0.163 Sum_probs=121.2
Q ss_pred ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487 269 MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348 (610)
Q Consensus 269 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 348 (610)
...+.+|+.++|.|.+.|.|.|.+.|++++..+............. ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 206 (334)
T 1ry7_B 132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH-----QQWSLVMESVVPSDRGNYTCVVENKFGSI 206 (334)
T ss_dssp EEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCT-----TTTEEEECSCCGGGCCCEEEEEEETTEEE
T ss_pred eEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceeccc-----ceEEEEECCCCcccCEEEEEEEEeCCCCE
Confidence 4678899999999999999999999999998876654321111111 12489999999999999999999999999
Q ss_pred eEEEEEEcCcccc-cccccc-CCcceeehhhhHHHHHHHHHhheeEEEEEEeee---ccccccccc-----CCccccccc
Q psy10487 349 SGEISLDLPEINL-ATTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE---HKNKRRKRK-----GKMKQSVSF 418 (610)
Q Consensus 349 ~~~~~L~V~~~~~-~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~ 418 (610)
...+.|.|..... +|.+.. .+....+..+..+.+.|.+.+.+...+.|.+.. ......... .........
T Consensus 207 ~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 286 (334)
T 1ry7_B 207 RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTT 286 (334)
T ss_dssp EEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCS
T ss_pred EEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccc
Confidence 8899898854322 222322 222233333333333333333333333443321 100000000 000000000
Q ss_pred cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCc
Q psy10487 419 NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPV 463 (610)
Q Consensus 419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~ 463 (610)
......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+.|+.
T Consensus 287 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 331 (334)
T 1ry7_B 287 DKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE 331 (334)
T ss_dssp CTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred cccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence 112247999999999999999999999999999999998876543
No 76
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.73 E-value=1.2e-17 Score=156.27 Aligned_cols=174 Identities=20% Similarity=0.275 Sum_probs=115.7
Q ss_pred CCceeeee--cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 260 PPNVTIKE--SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 260 ~P~i~~~~--~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
||.+...+ ..+.+.+|+.++|.|.+.|.|.|.+.|++++..+....+.... .. .+.|.|.+++.+|+|.|
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~~------~~~L~i~~~~~~d~G~Y 73 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GS------NTELTVRNIINSDGGPY 73 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEEE--TT------TTEEEECSCCGGGCEEE
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEEe--CC------eeEEEEecCChhcCcEE
Confidence 56666543 4678889999999999999999999999999988765432111 11 13799999999999999
Q ss_pred EEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCCc---
Q psy10487 338 TCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKM--- 412 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--- 412 (610)
+|.|.|..|.....+.|.|.. +|.+..........+ .. +.+.|.....+ ...|.+....
T Consensus 74 ~C~~~~~~~~~~~~~~l~V~~---~p~~~~~~~~~~~~g-~~------------v~l~C~~~~~p~~~v~W~~~~~~~~~ 137 (192)
T 2va4_A 74 VCRATNKAGEDEKQAFLQVFV---QPHIIQLKNETTYEN-GQ------------VTLVCDAEGEPIPEITWKRAVDGFTF 137 (192)
T ss_dssp EEEEEETTEEEEEEEEEEEEE---EEEEEEECCEEECTT-SE------------EEEEEEEEEESCCEEEEEETTTTEEE
T ss_pred EEEEEccccccceEEEEEEEc---cCcccccCcceEEeC-Ce------------EEEEEEecCCCCCcEEEEeCCCCcee
Confidence 999999999988888888832 222222222111111 11 12333333322 2233322100
Q ss_pred -------cccccc--cccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 413 -------KQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 413 -------~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
...+.. ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 191 (192)
T 2va4_A 138 TEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191 (192)
T ss_dssp CTTCBCTTSCEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred eccccccCCcEEEeeccCceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEe
Confidence 011111 122357999999999999999999999999888777654
No 77
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.73 E-value=1.7e-18 Score=162.12 Aligned_cols=180 Identities=18% Similarity=0.166 Sum_probs=115.4
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
-+|.+...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+...........++ ..|.|.+++.+|+|.|+
T Consensus 6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~ 78 (192)
T 2iep_A 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG-------QLLTILSVEDSDDGIYC 78 (192)
T ss_dssp EEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGG-------TEEEESSCCGGGCEEEE
T ss_pred CCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCc-------cEEEEcCCCcccCeEEE
Confidence 35777777788889999999999999999999999999999886543222222111 37999999999999999
Q ss_pred EEeecCCcc-eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCc--ccc
Q psy10487 339 CYAENIRGN-ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKM--KQS 415 (610)
Q Consensus 339 C~a~N~~G~-~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 415 (610)
|.+.|..|. ....+.|.|.. +|.+...+....+..+.... +.|.......+...|.+.+.. ...
T Consensus 79 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~----------l~C~~~g~p~~~v~W~~~~~~~~~~~ 145 (192)
T 2iep_A 79 CTANNGVGGAVESCGALQVKM---KPKITRPPINVKIIEGLKAV----------LPCTTMGNPKPSVSWIKGDSALRENS 145 (192)
T ss_dssp EEEECSSSCCEEEEEEEEEEE---EEEEEECCCCEEEETTSCEE----------ECCEEEEESCCEEEEEETTEECCCCS
T ss_pred EEEEcCCCceeEeEEEEEEEe---CCccccCCcceEEeCCCcEE----------EEEEEeccCCceEEEEeCCEEccCCC
Confidence 999999887 45566777632 23333333322222222211 122222222222223222111 011
Q ss_pred ccccccccceeeeeeeeccCcceeeeecCCCcceee-eeecccc
Q psy10487 416 VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSLAM 458 (610)
Q Consensus 416 ~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~ 458 (610)
......++.|.|.+++.+|+|.|+|.|.|..|.... ...|.|.
T Consensus 146 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 189 (192)
T 2iep_A 146 RIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189 (192)
T ss_dssp SEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred cEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence 111234557999999999999999999999998744 3555444
No 78
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.73 E-value=2.6e-17 Score=152.16 Aligned_cols=116 Identities=30% Similarity=0.581 Sum_probs=93.8
Q ss_pred CCCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhh
Q psy10487 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101 (610)
Q Consensus 22 ~~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f 101 (610)
..||..|.|. ...++|.+++++++|..++.+|++|+|++|.|+.+++..|. ++.+|++|+|++|+|+.+++..|
T Consensus 4 ~~CP~~C~C~----~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~ 77 (174)
T 2r9u_A 4 AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTGVF 77 (174)
T ss_dssp CSSCTTSEEC----SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCEEC----CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCCCCccChhHh
Confidence 5799999997 36899999999999999999999999999999988887777 67788888888888887777777
Q ss_pred cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccc
Q psy10487 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143 (610)
Q Consensus 102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~ 143 (610)
.++++|++|+|++|+|..+++..|..+++|++|+|++|++..
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 777777777777777777776666666667766666666543
No 79
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=2.4e-17 Score=152.92 Aligned_cols=136 Identities=27% Similarity=0.468 Sum_probs=88.9
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccc
Q psy10487 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN 185 (610)
Q Consensus 106 ~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 185 (610)
+|++|+|++|++..+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|+|+.+.+..|..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44455555555554444444455555555555555555544445555566666666666666555555666677777777
Q ss_pred cccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhcc-CCCCCCCCCCC
Q psy10487 186 GNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSK-LYSHPLSCTEP 241 (610)
Q Consensus 186 ~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~-l~~~~~~C~a~ 241 (610)
+|.++.++...+..+++|+.|++++|+|.|+|. +.++..|+.... .......|..+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~~ 166 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 166 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBBTTT
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEeCCC
Confidence 777777777667778899999999999999997 788888987644 33467778653
No 80
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.73 E-value=7.4e-18 Score=160.27 Aligned_cols=166 Identities=15% Similarity=0.141 Sum_probs=111.5
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
+|.+...+....+.+|++++|.|.+.|.|.|. +.|+++|..+.... +.|.|.+++.+|+|.|+
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------------~~L~i~~v~~~D~G~Y~ 70 (204)
T 3sgj_C 7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------------SSYFIDAATVDDSGEYR 70 (204)
T ss_dssp BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------------SEEEESSCCGGGCEEEE
T ss_pred CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------------cEEEEecccccCCEEEE
Confidence 46777778778999999999999999999886 99999998876543 38999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccc
Q psy10487 339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF 418 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (610)
|.|.|.. .+..+.|.|... |.+...+......+ .. +.+.|.....+......|.+.+..+..
T Consensus 71 C~a~n~~--~s~~~~l~V~~~---p~~~~~~~~~v~~G-~~------------v~L~C~~~~~~p~~~v~W~k~g~~~~~ 132 (204)
T 3sgj_C 71 CQTQLST--LSDPVQLEVHIG---WLLLQAPRWVFKEE-DP------------IHLRCHSWKNTALHKVTYLQNGKGRKY 132 (204)
T ss_dssp EEETTSB--CCCCEEEEEECS---SEEEECSCSEEETT-CC------------EEEEEEEGGGCCCEEEEEEETTEEEEE
T ss_pred EEeCCCc--ccccEEEEEecC---ceEecCCceeEeCC-Cc------------EEEEEEecCCCCCceEEEEECCcEeec
Confidence 9999854 444555655322 22222222222221 11 133454433322122334334443434
Q ss_pred cccccceeeeeeeeccCcceeeeecCC-Ccceeeeeeccccc
Q psy10487 419 NDQEKKLLDVSITTTDRHTGSCEALGS-QPDMELIEQSLAME 459 (610)
Q Consensus 419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~-~G~~~~~~~l~v~~ 459 (610)
...+..|.|.+++.+|+|.|+|.|.|. .+..+....+.|.+
T Consensus 133 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (204)
T 3sgj_C 133 FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ 174 (204)
T ss_dssp EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeC
Confidence 455678999999999999999999994 44444455555554
No 81
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=2.6e-17 Score=172.76 Aligned_cols=131 Identities=21% Similarity=0.378 Sum_probs=81.2
Q ss_pred cEEEcCCCCCCccCccc---CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDANFTALPSTL---DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l---~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
+.++..+..++.+|..+ .++|++|+|++|.|+.++...|. ++.+|++|+|++|.+..+.+..|.++++|++|+|+
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 34455555555555432 24566666666666666655555 56666666666666666666666666666666666
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (610)
+|++..++...|.++++|++|+|++|.++.+.+..|..+++|+.|++++|+++.+.
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 66666666655666666666666666666666655666666666666666665543
No 82
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.72 E-value=8.7e-18 Score=169.78 Aligned_cols=210 Identities=18% Similarity=0.189 Sum_probs=128.4
Q ss_pred CCCCCCCCCCCCccCCCccccccccccc------CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA------CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS 304 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~------c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~ 304 (610)
.+.+.|+|.+.+..+. ....+...... ..|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+...
T Consensus 74 ~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~ 152 (304)
T 2yd9_A 74 RDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPS 152 (304)
T ss_dssp TTCSEEEEEEECSSCE-ECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGG
T ss_pred CCCeEEEEEEECCCCe-EEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCC
Confidence 4678899988765543 11122221111 1267777778888999999999999999999999999999988654
Q ss_pred CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE-EEEEcCccccccccccCCcceeehhhhHHHHH
Q psy10487 305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE-ISLDLPEINLATTLSKTDSWYMLVLGISVCVV 383 (610)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~-~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~ 383 (610)
........ ...+.|.|.+++.+|+|.|+|.|.|..|..... +.+.|.....+|.+...+....+..+..
T Consensus 153 ~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~---- 222 (304)
T 2yd9_A 153 ASNGRIKQ------LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGN---- 222 (304)
T ss_dssp GGTTSEEE------CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCC----
T ss_pred CCcceEEe------CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCe----
Confidence 32211111 112489999999999999999999999986532 4454432334444444433332222221
Q ss_pred HHHHhheeEEEEEEeee--cccccccccCCccc-cccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487 384 SVIVSIGMSFCVCRAHE--HKNKRRKRKGKMKQ-SVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ 460 (610)
Q Consensus 384 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~ 460 (610)
+.+.|...+ .+...|.+.+..-. ..........|.+.++ +|+|.|+|.|.|..|..+..+.|.|.+.
T Consensus 223 --------v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 292 (304)
T 2yd9_A 223 --------VNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSL 292 (304)
T ss_dssp --------EEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC----
T ss_pred --------EEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence 123333333 33333333221100 0011122234666655 5999999999999999999999988764
Q ss_pred C
Q psy10487 461 P 461 (610)
Q Consensus 461 p 461 (610)
+
T Consensus 293 ~ 293 (304)
T 2yd9_A 293 P 293 (304)
T ss_dssp -
T ss_pred c
Confidence 3
No 83
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=176.27 Aligned_cols=210 Identities=11% Similarity=0.097 Sum_probs=124.5
Q ss_pred cCCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCccc
Q psy10487 230 KLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 230 ~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~ 308 (610)
..+.+.|.|.+.|..+......+... +..+|.+ .+....+.+|+.++|.|.+.| .|.|.|.|++++..+.......
T Consensus 200 ~~d~G~Y~C~A~N~~G~~~~~~~~l~-V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~ 276 (423)
T 3qs7_E 200 ELFGTDIRCCARNELGRECTRLFTID-LNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFE 276 (423)
T ss_dssp CCCSSCEEEEEECSSCEEEEECEEEE-SSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEE
T ss_pred cccCeEEEEEEEcCCCCcceeeEEEE-EecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceee
Confidence 35678899999887654322222222 2223333 345678899999999999999 7889999999998775432111
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCC--cceeehhhhHHHHHHHH
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTD--SWYMLVLGISVCVVSVI 386 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~ 386 (610)
.....++......+.|.|.+++.+|+|.|+|.|.|. .+..+.|.|.+. |.+...+ ....+..+..+.
T Consensus 277 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~---p~i~~~~~~~~~~v~~G~~v~----- 345 (423)
T 3qs7_E 277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEK---GFINATNSSEDYEIDQYEEFC----- 345 (423)
T ss_dssp EEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESS---CEEEEC---CEECCCTTCCCC-----
T ss_pred cccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeC---CcceEcCCCccEEecCCCeEE-----
Confidence 111111112344568999999999999999999998 677777877432 2222211 112222111111
Q ss_pred HhheeEEEEEEeeecccccccccCCccccccccc--cccceee--eeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 387 VSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFND--QEKKLLD--VSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i--~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
+.|.....+.+...|.+ .+..+.... ....+.+ ..+..+|+|.|+|.|.|..|.++.++.|.|...|
T Consensus 346 -----l~C~~~g~P~p~i~W~k---~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p 416 (423)
T 3qs7_E 346 -----FSVRFKAYPQIRCTWTF---SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416 (423)
T ss_dssp -----EEEEEEEESCCEEEEEE---TTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----
T ss_pred -----EEEEEEEcCCCeEEEEE---CCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCC
Confidence 23333333333333333 332221111 0112333 5566789999999999999999999999887654
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=4.3e-17 Score=162.30 Aligned_cols=156 Identities=31% Similarity=0.350 Sum_probs=144.5
Q ss_pred CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV 133 (610)
Q Consensus 54 ~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~ 133 (610)
..+|+.|++++|.++.++. +. .+++|++|+|++|.+..+. .|..+++|++|+|++|++..+.+..|.++++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~~--l~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG--IQ--YLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT--GG--GCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccceeeeeeCCCCcccccc--cc--cCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3589999999999998763 44 6899999999999999874 6899999999999999999999998999999999
Q ss_pred EEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487 134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 134 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~ 213 (610)
|+|++|.++.+.+..|..+++|+.|+|++|+++.+.+..|..+++|+.|++++|+++.++...+..+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 99999999999998899999999999999999999888889999999999999999999998888999999999999987
Q ss_pred cc
Q psy10487 214 CC 215 (610)
Q Consensus 214 ~c 215 (610)
..
T Consensus 194 ~~ 195 (272)
T 3rfs_A 194 KS 195 (272)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 85
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.72 E-value=5.5e-18 Score=163.40 Aligned_cols=197 Identities=21% Similarity=0.202 Sum_probs=121.3
Q ss_pred CCceeeee----cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487 260 PPNVTIKE----SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG 335 (610)
Q Consensus 260 ~P~i~~~~----~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 335 (610)
+|.+...+ ....+.+|++++|.|.+.|.|.|.+.|++++..+............ ...+.|.|.+++.+|+|
T Consensus 15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G 89 (231)
T 3ojm_B 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKG 89 (231)
T ss_dssp EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCE
T ss_pred CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeee-----cCcceEEEecCCcccCE
Confidence 35554444 6778899999999999999999999999999988655432111100 11248999999999999
Q ss_pred EEEEEeecCCcceeEEEEEEcCcccc-ccccc-cCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCc-
Q psy10487 336 EYTCYAENIRGNASGEISLDLPEINL-ATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKM- 412 (610)
Q Consensus 336 ~Y~C~a~N~~G~~~~~~~L~V~~~~~-~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 412 (610)
.|+|.|.|..|.....+.|.|..... +|.+. ..+....+..+..+.+.|.+.+.+...+.|.+..............
T Consensus 90 ~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~ 169 (231)
T 3ojm_B 90 NYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP 169 (231)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCB
T ss_pred EEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcc
Confidence 99999999999988888888854322 12221 1222222222222222222222222222222211100000000000
Q ss_pred -----cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 413 -----KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 413 -----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
............|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++|
T Consensus 170 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 223 (231)
T 3ojm_B 170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223 (231)
T ss_dssp CEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred eEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCC
Confidence 0000111234569999999999999999999999999998888887653
No 86
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=6.9e-18 Score=171.68 Aligned_cols=175 Identities=14% Similarity=0.158 Sum_probs=138.4
Q ss_pred cEEEcCC-CCCC-ccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487 37 KSALCKD-ANFT-ALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL 112 (610)
Q Consensus 37 ~~~~C~~-~~l~-~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL 112 (610)
+.++..+ +++. .+|..+. .+|++|+|++|.|+...+..|. ++++|++|+|++|.+....+..|..+++|++|+|
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 4566663 5555 6776553 5899999999999866666676 6899999999999999777888999999999999
Q ss_pred cCCCCCCCCcccccCCC-CCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccc
Q psy10487 113 SDNQIAWLHQDTFLGND-RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191 (610)
Q Consensus 113 s~n~l~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 191 (610)
++|++....+..|..+. +|++|+|++|.++...+..|..+. |+.|+|++|++....+..|..+++|+.|+|++|.++.
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 99999866667788887 899999999998877666777776 8888888888887777777778888888888888776
Q ss_pred cCcccccCCCcccEEecCCCcccc
Q psy10487 192 LSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 192 ~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
..+. +..+++|+.|++++|.+..
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEE
T ss_pred ecCc-ccccCCCCEEECcCCcccC
Confidence 5554 5566777778887777653
No 87
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.72 E-value=3.4e-17 Score=151.98 Aligned_cols=176 Identities=18% Similarity=0.122 Sum_probs=114.6
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............. ...+.|.|.+++.+|+|.|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C 77 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ----HWIGFLSLKSVERSDAGRYWC 77 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETT----EEEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCC----CceEEEEEeecCcccCeEEEE
Confidence 4667777888999999999999999999999999999999887654332222221 224689999999999999999
Q ss_pred EeecCCcc-eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccc
Q psy10487 340 YAENIRGN-ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF 418 (610)
Q Consensus 340 ~a~N~~G~-~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (610)
.|.|..|. .+..+.|.|.. +|.+...+....+..+.. +.+.|...+.+......|.+.+..+..
T Consensus 78 ~~~~~~~~~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~p~~v~W~~~~~~~~~ 142 (182)
T 1rhf_A 78 QVEDGGETEISQPVWLTVEG---VPFFTVEPKDLAVPPNAP------------FQLSCEAVGPPEPVTIVWWRGTTKIGG 142 (182)
T ss_dssp EESSCTTCEECCCEEEEEEC---SCEEEECCCCEEECTTCC------------EEEEEEEECSSSCCEEEEEETTEECSC
T ss_pred EEEcCCCcEEEEEEEEEEec---CCeEEecCcceEecCCCE------------EEEEeEecCCCCCCEEEEEcCCeECCC
Confidence 99999875 45677787743 344444333333322221 233444444433212233333222211
Q ss_pred -cccccceeeeeeeeccCcceeeeecCCCcceee-eeecc
Q psy10487 419 -NDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSL 456 (610)
Q Consensus 419 -~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~ 456 (610)
......|.|.++ +|+|.|+|.|.|..|..+. .+.|.
T Consensus 143 ~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~ 180 (182)
T 1rhf_A 143 PAPSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVH 180 (182)
T ss_dssp SEESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEE
T ss_pred CCCCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEE
Confidence 125567888888 5999999999999998754 44443
No 88
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.72 E-value=9.1e-19 Score=166.31 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=103.0
Q ss_pred ceEeecCceEEEEEE---EEecCCCeEEEEeCCEEeccCC----cccee--ecc--CCce---eeeeeEEEEEecCCCCC
Q psy10487 269 MVIREAGGNVTMSCY---VYGDPEPTILWLLNGQVLHNSS----FDLLE--EEE--GDAL---FEKSVSITLFNVTDLDA 334 (610)
Q Consensus 269 ~~~v~~G~~v~l~C~---~~g~P~p~v~W~~~g~~l~~~~----~~~~~--~~~--~~~~---~~~~~~L~I~~v~~~D~ 334 (610)
.+++..|+.++|.|. +.|.|.|.|+|+|+|..+.... ..... ... +... ......|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 467889999999995 5688999999999764321100 00000 000 0000 01235899999999999
Q ss_pred eEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcc-
Q psy10487 335 GEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMK- 413 (610)
Q Consensus 335 G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 413 (610)
|.|+|.|.|..|..+..+.|.|.. +|.+...+....+..+.. ..+.|.....+.+...|.+.....
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~---p~~~~~~~~~~~v~~g~~----------~~l~C~~~G~P~P~v~W~~~~~~~~ 148 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVK---PLTLSVHSERSQFPDFSV----------LTVTCTVNAFPHPHVQWLMPEGVEP 148 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEE---EEEEEEEEEECCSSCSCC----------EEEEEEEEEESCCEEEECCC-----
T ss_pred eEEEEEEEcCCCcEEEEEEEEecC---CceeeecceeEEEcCCCE----------EEEEEEcCCCCCCEEEEEECCeeec
Confidence 999999999999999999998842 333333333222222111 112333334444444453322110
Q ss_pred -----ccccccccccce---eeeeeeeccCcceeeeecCCCcceeee
Q psy10487 414 -----QSVSFNDQEKKL---LDVSITTTDRHTGSCEALGSQPDMELI 452 (610)
Q Consensus 414 -----~~~~~~~~~~~L---~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 452 (610)
........++.| .+.++..+|+|.|+|+|+|.+|+++..
T Consensus 149 ~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 149 APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp -------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred CcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 011112334444 446888999999999999999998764
No 89
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.72 E-value=1.3e-18 Score=174.38 Aligned_cols=214 Identities=13% Similarity=0.083 Sum_probs=126.3
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|+|.+.+..+......+.. .+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........
T Consensus 70 ~D~G~Y~C~~~n~~g~~~~~~~~l-~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~ 148 (291)
T 2wim_A 70 EDAGIYRCQATDAKGQTQEATVVL-EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA 148 (291)
T ss_dssp GGCEEEEEEEECSSSCEEEEEEEE-EEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEE
T ss_pred ccCEEEEEEEecccCceEEEEEEE-EecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEE
Confidence 467889998876654332222222 2234566666677788999999999999999999999999999877643321111
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce--eEEEEEEcCccccccccccCCcc--eeehhhhHHHHHHHH
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLPEINLATTLSKTDSW--YMLVLGISVCVVSVI 386 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~ 386 (610)
. ...+.|.|.+++.+|+|.|+|.|.|..+.. ...+.+.|.. +|.+...... ..+..+..+.+.|.+
T Consensus 149 ~-------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~ 218 (291)
T 2wim_A 149 M-------LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV---PPAISMPQKSFNATAERGEEMTFSCRA 218 (291)
T ss_dssp E-------CTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB---CCCCBCSCSEEECCSSSCCEEEEECBC
T ss_pred E-------ccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc---CCccccCcccccceecCCCeEEEEEEe
Confidence 1 112479999999999999999999998653 3455555532 2232222211 111111111111111
Q ss_pred HhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCC
Q psy10487 387 VSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPP 462 (610)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp 462 (610)
.+.+...+.|.+.+... ...........+..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+++|
T Consensus 219 ~g~p~p~v~W~~~g~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~ 287 (291)
T 2wim_A 219 SGSPEPAISWFRNGKLI-------EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287 (291)
T ss_dssp CCBSCCEEEEEETTEEC-------CCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred ecCCCCeEEEEECCEEC-------cCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence 12222222222211110 0111122233456899999999999999999999999999999999987654
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=2.5e-17 Score=169.00 Aligned_cols=169 Identities=18% Similarity=0.309 Sum_probs=103.8
Q ss_pred cEEEcCCCCCCcc-CcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDANFTAL-PSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~~l~~l-P~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
+.++..+++++.+ |..+. .+|++|+|++|.|+.++...+ .+|++|++++|.+..+.+..|.++++|++|+++
T Consensus 81 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred cEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-----ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 4566666666666 33332 467777777777776665443 467777777777777776667777777777777
Q ss_pred CCCCCC--CCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccc
Q psy10487 114 DNQIAW--LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191 (610)
Q Consensus 114 ~n~l~~--l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 191 (610)
+|.+.. +.+..|..+ +|+.|+|++|.++.++...+ ++|+.|+|++|++..+.+..|..+++|+.|+|++|+++.
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 777753 455556555 66666666666665544322 455555666666655555555555566666666666655
Q ss_pred cCcccccCCCcccEEecCCCccc
Q psy10487 192 LSESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 192 ~~~~~~~~~~~L~~l~l~~N~~~ 214 (610)
+....+..+++|+.|++++|.+.
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC
T ss_pred CChhHhhCCCCCCEEECCCCcCe
Confidence 55555555555666666655554
No 91
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.71 E-value=8.5e-18 Score=168.37 Aligned_cols=206 Identities=15% Similarity=0.139 Sum_probs=132.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|+|.+.+..++.....+... +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........
T Consensus 72 ~D~G~Y~C~~~n~~g~~~~~~~~l~-v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~ 150 (291)
T 1qz1_A 72 DDAGIYKCVVTAEDGTQSEATVNVK-IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150 (291)
T ss_dssp GGCEEEEEEEECTTSCEEEEEEEEE-EECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEE
T ss_pred CCCEEEEEEEEcCCCCeeEEEEEEE-eeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEE
Confidence 4678899998776643322222222 235677777788888999999999999999999999999999877544322222
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce--eEEEEEEcCccccccccccCCc--ceeehhhhHHHHHHHH
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLPEINLATTLSKTDS--WYMLVLGISVCVVSVI 386 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~ 386 (610)
.. ..+.|.|.+++.+|+|.|+|.|.|..+.. ...+.+.|.. +|.+..... ...+..+..
T Consensus 151 ~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~------- 213 (291)
T 1qz1_A 151 VL-------SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV---PPTVQARQSIVNATANLGQS------- 213 (291)
T ss_dssp EC-------TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE---EEEEEESCSEEEEETTSCCC-------
T ss_pred Ec-------cCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec---CCcccccccccccccccCce-------
Confidence 11 12489999999999999999999987543 3455666532 222222111 111111111
Q ss_pred HhheeEEEEEEeee--cccccccccCCcc-------ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 387 VSIGMSFCVCRAHE--HKNKRRKRKGKMK-------QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 387 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
+.+.|...+ .+...|.+.+..- ...........|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 214 -----v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 288 (291)
T 1qz1_A 214 -----VTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288 (291)
T ss_dssp -----EEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred -----EEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEE
Confidence 122333333 2233333322110 11222234567999999999999999999999999999888887
Q ss_pred cc
Q psy10487 458 ME 459 (610)
Q Consensus 458 ~~ 459 (610)
.+
T Consensus 289 ~~ 290 (291)
T 1qz1_A 289 FA 290 (291)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 92
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.71 E-value=1.1e-17 Score=156.50 Aligned_cols=173 Identities=20% Similarity=0.199 Sum_probs=110.2
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecC-CCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
++.+...+....+.+|+.++|.|.+.|.| .+.+.|++ +|..+............. ...+.|.|.+++.+|+|.|
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y 77 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIY 77 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECC----CCceEEEEccCCcccCEEE
Confidence 35677788899999999999999999987 89999999 888776433222111110 1235899999999999999
Q ss_pred EEEeecCC-cceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCCc--
Q psy10487 338 TCYAENIR-GNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKM-- 412 (610)
Q Consensus 338 ~C~a~N~~-G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 412 (610)
+|.|.|.. +..+..+.|.|.. +|.+...+....+..+.... +.|.....+ ...|.+.+..
T Consensus 78 ~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~------------l~C~~~g~p~~~v~W~~~~~~~~ 142 (191)
T 1epf_A 78 KCVVTAEDGTQSEATVNVKIFQ---KLMFKNAPTPQEFKEGEDAV------------IVCDVVSSLPPTIIWKHKGRDVI 142 (191)
T ss_dssp EEEEEETTTEEEEEEEEEEEEC---CSEEEECCSSEECCTTSCEE------------ECCEEECSSCCEEEEEETTEEGG
T ss_pred EEEEEcCCCcceEEEEEEEeec---CceEecCCCcEeecCCCeEE------------EEEEECCCCCCEEEEEECCEEee
Confidence 99999998 5567777887732 33333333333322222211 222222222 2222221110
Q ss_pred --cccccccccccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487 413 --KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL 451 (610)
Q Consensus 413 --~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 451 (610)
.........++.|.|.+++.+|+|.|+|.|.|..|....
T Consensus 143 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 183 (191)
T 1epf_A 143 LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEIN 183 (191)
T ss_dssp GGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEE
T ss_pred ccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEE
Confidence 000111123458999999999999999999998865433
No 93
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=168.76 Aligned_cols=210 Identities=13% Similarity=0.075 Sum_probs=128.7
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCce--eeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCcc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNV--TIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFD 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i--~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~ 307 (610)
.+.+.|+|.+.+...+.....+..... .+|.+ ...+.......|+.+.|.|.+ .|.|.|.|.|++++..+.....
T Consensus 84 ~D~G~Y~C~a~n~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~- 161 (308)
T 4fom_A 84 SDSGKYICKAVTFPLGNAQSSTTVTVL-VEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT- 161 (308)
T ss_dssp GGCEEEEEEEEETTTEEEEEEEEEEEE-BCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE-
T ss_pred HHCEEEEEEEeeCCCcceeeeeEEEee-eccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc-
Confidence 367889998765433332222222221 23333 233455566678999999975 6899999999999987754321
Q ss_pred ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE--EEEEEcCccccccccccCC-cceeehhhhHHHHHH
Q psy10487 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG--EISLDLPEINLATTLSKTD-SWYMLVLGISVCVVS 384 (610)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~--~~~L~V~~~~~~p~~~~~~-~~~~~~~~~~~~~~~ 384 (610)
....+ .....+.|.|..+..+|.|.|+|.|.|..|.... ++.|.|. .+|.+...+ .......+..
T Consensus 162 --~~~~~--~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~---~~P~~~~~~~~~~~~~~g~~----- 229 (308)
T 4fom_A 162 --SFPNE--TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ---YAPEVSVTGYDGNWFVGRKG----- 229 (308)
T ss_dssp --ECTTS--CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC---EEEEECCBCCCSCEETTCCS-----
T ss_pred --eeeee--cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe---cCCeeEEcccceeeeecccc-----
Confidence 11111 2234568999999999999999999999887654 4444443 223332222 1122222111
Q ss_pred HHHhheeEEEEEEeeecccccccccCCccccc---cccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 385 VIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSV---SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
+.+.|...+.+.+....|.+.+..+ ........|.|.+++.+|+|.|+|.|.|..|+.+.++.|.|.++|
T Consensus 230 -------v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P 302 (308)
T 4fom_A 230 -------VNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP 302 (308)
T ss_dssp -------CEEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred -------EEEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence 1334444444433222333322222 122334456788999999999999999999999999999988764
No 94
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=167.67 Aligned_cols=187 Identities=16% Similarity=0.092 Sum_probs=125.5
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.............+ ..+.|.|.+++.+|+|.|+
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~ 78 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG----GYHQLIIASVTDDDATVYQ 78 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETT----TEEEEEESSCCGGGCSEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCC----CEEEEEEccCChhhCeEEE
Confidence 478888889999999999999999999999999999999998875433222111111 1248999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCcccc--ccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee--cccccccccCCc--
Q psy10487 339 CYAENIRGNASGEISLDLPEINL--ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE--HKNKRRKRKGKM-- 412 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 412 (610)
|.|.|..|..+..+.|.|...+. .|..........+..+.. +.+.|...+ .+...|.+....
T Consensus 79 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~p~i~W~~~~~~~~ 146 (305)
T 2nzi_A 79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV------------VSIKIPFSGKPDPVITWQKGQDLID 146 (305)
T ss_dssp EEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCC------------EEEEEEEEEESCCEEEEEESSSBCC
T ss_pred EEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCE------------EEEEEEECCCCCCEEEEEECCEECC
Confidence 99999999998899998853221 111111111111111111 123333333 333334332211
Q ss_pred -cccc--cccccccceeeee-eeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 413 -KQSV--SFNDQEKKLLDVS-ITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 413 -~~~~--~~~~~~~~L~i~~-v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
.... ........|.|.+ ++.+|+|.|+|.|.|..|..+....+.|.+.|
T Consensus 147 ~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P 199 (305)
T 2nzi_A 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 199 (305)
T ss_dssp SSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred CCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC
Confidence 1111 1112446788988 99999999999999999999998888876543
No 95
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.70 E-value=1.9e-17 Score=185.45 Aligned_cols=206 Identities=17% Similarity=0.229 Sum_probs=129.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|+|.+.+..+......+......-|+.....+....+.+|+.++|.|.+.|.|.|.+.|+++|..+...
T Consensus 352 ~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~------ 425 (642)
T 1e07_A 352 NDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT------ 425 (642)
T ss_pred ccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCC------
Confidence 36678999998876543322233333223333445566778899999999999999999999999999876532
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE--EEEEcCccccccccccCCcceeehhhhHHHHHHHHHh
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE--ISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVS 388 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~--~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (610)
..|.|.+++.+|+|.|+|.|.|..|....+ +.+.|.....+|.+..... ..+..+..+.+.|.+..
T Consensus 426 -----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~-~~v~~g~~v~l~C~~~~ 493 (642)
T 1e07_A 426 -----------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNS-KPVEDKDAVAFTCEPEA 493 (642)
T ss_pred -----------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCc-eeecCCCeEEEEEECCC
Confidence 279999999999999999999999976554 4555544333444433222 11212222111111111
Q ss_pred heeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceee-eeecccccCCC
Q psy10487 389 IGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSLAMEQPP 462 (610)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~~~pp 462 (610)
+...+.|++.+..-. ....+.....++.|.|.+++.+|+|.|+|.|.|..|.... .+.|.|...|+
T Consensus 494 -~~~~i~W~~~g~~l~-------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~ 560 (642)
T 1e07_A 494 -QNTTYLWWVNGQSLP-------VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD 560 (642)
T ss_pred -CCcEEEEEECCEeCC-------CCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCC
Confidence 111222222221110 1111222234568999999999999999999999997654 47777765443
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.2e-17 Score=170.27 Aligned_cols=175 Identities=21% Similarity=0.239 Sum_probs=142.3
Q ss_pred cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCC
Q psy10487 37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~ 116 (610)
+.++..+++++.++. ..+|++|++++|.|+.+... .+++|++|++++|.+..+.+..|..+++|++|+|++|+
T Consensus 83 ~~L~Ls~n~l~~l~~--~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 83 RTLDLNNNYVQELLV--GPSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp CEEECCSSEEEEEEE--CTTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred CEEECcCCccccccC--CCCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 345555555555542 24666666666666655433 35689999999999999998899999999999999999
Q ss_pred CCCCCcccc-cCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487 117 IAWLHQDTF-LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195 (610)
Q Consensus 117 l~~l~~~~f-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 195 (610)
+..+.+..| ..+++|++|+|++|.++.+.. ...+++|+.|+|++|+|+.+++. |..+++|+.|+|++|+++.++.
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~- 231 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK- 231 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-
Confidence 999877766 478999999999999999855 33589999999999999999765 8899999999999999998876
Q ss_pred cccCCCcccEEecCCCcccccCCchhh
Q psy10487 196 VFFPTPNLKTLSLDGNPWCCDCHLRSF 222 (610)
Q Consensus 196 ~~~~~~~L~~l~l~~N~~~c~c~l~~~ 222 (610)
.+..+++|+.|++++|++.|+|...++
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 467889999999999999998654443
No 97
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=7.7e-17 Score=165.01 Aligned_cols=175 Identities=19% Similarity=0.249 Sum_probs=146.7
Q ss_pred CCcEEEcCCCCCCccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487 35 GKKSALCKDANFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL 112 (610)
Q Consensus 35 ~~~~~~C~~~~l~~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL 112 (610)
+...++..+++++.+|..+. .+|++|+|++|.|+.++. .|. ++.+|++|+|++|.+..+ +..|..+++|++|+|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~--~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQ--QFAGLETLTLARNPLRAL-PASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGG--GGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHh--ccCCCCEEECCCCccccC-cHHHhcCcCCCEEEC
Confidence 45788999999999998764 489999999999997764 444 588999999999999977 456899999999999
Q ss_pred cCCCCCCCCcccc---------cCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccc
Q psy10487 113 SDNQIAWLHQDTF---------LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLN 183 (610)
Q Consensus 113 s~n~l~~l~~~~f---------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 183 (610)
++|++....+..+ .++++|++|+|++|.++.++. .|..+++|+.|+|++|++..+++ .+..+++|+.|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEE
Confidence 9976655444444 348999999999999997754 58889999999999999998855 588999999999
Q ss_pred cccccccccCcccccCCCcccEEecCCCcccc
Q psy10487 184 LNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 184 L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
|++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 99998888777788889999999999987654
No 98
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.70 E-value=5.7e-18 Score=161.12 Aligned_cols=186 Identities=22% Similarity=0.314 Sum_probs=117.6
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc----ceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD----LLEEEEGDALFEKSVSITLFNVTDLDA 334 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~ 334 (610)
.+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+...... .....++. .....|.|.+++.+|+
T Consensus 8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~ 84 (212)
T 2v9r_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS---LFFLRIVHGRKSRPDE 84 (212)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSC---EEESSCCCCSSCCCSC
T ss_pred CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCc---EEEEEEEecCCCcccC
Confidence 4688888889999999999999999999999999999999987654321 11111111 1223456677899999
Q ss_pred eEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEe-ee--cccccccccC
Q psy10487 335 GEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA-HE--HKNKRRKRKG 410 (610)
Q Consensus 335 G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~ 410 (610)
|.|+|.|.|..|.. +..+.|.|... ++.+...+....+..+..+ .+.|.. .. .+...|.+.+
T Consensus 85 G~Y~C~~~n~~g~~~~~~~~l~V~~~--~~~~~~~~~~~~~~~g~~~------------~l~C~~~~~~p~~~v~W~~~~ 150 (212)
T 2v9r_A 85 GVYVCVARNYLGEAVSHDASLEVAIL--RDDFRQNPSDVMVAVGEPA------------VMECQPPRGHPEPTISWKKDG 150 (212)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECEE--CSSCSBCCCCEEEETTSCE------------EEECBCCCEESCCEEEEEETT
T ss_pred eEEEEEEECCCCceeecceEEEEEec--cccceeCCCceEecCCCcE------------EEEEecCCCCCCCEEEEEECC
Confidence 99999999999876 45677777432 2223223332222222221 222322 11 1122222211
Q ss_pred Cc--cccccccccccceeeeeeeeccCcceeeeecCCCcceeee-eecccccCC
Q psy10487 411 KM--KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI-EQSLAMEQP 461 (610)
Q Consensus 411 ~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v~~~p 461 (610)
.. .........++.|.|.+++.+|+|.|+|.|.|..|..+.. +.|.|.++|
T Consensus 151 ~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P 204 (212)
T 2v9r_A 151 SPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204 (212)
T ss_dssp EEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred ccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCc
Confidence 10 0011122345689999999999999999999999987654 677776543
No 99
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.70 E-value=1.8e-17 Score=173.72 Aligned_cols=208 Identities=14% Similarity=0.138 Sum_probs=131.7
Q ss_pred CCCC---CCCCCCCCccCCCcccccc--cccc---------cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe
Q psy10487 231 LYSH---PLSCTEPGMLQTKHWDDVK--AQEF---------ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL 296 (610)
Q Consensus 231 l~~~---~~~C~a~~~l~g~~~~~v~--~~~~---------~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~ 296 (610)
.+.+ .|+|.+.+..+........ ...+ ..+|.+ .+....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus 171 ~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~ 248 (395)
T 1bih_A 171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK 248 (395)
T ss_dssp GGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEE
T ss_pred ccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEE
Confidence 3556 8999987766543221100 0001 012332 3567788999999999999999999999999
Q ss_pred CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE-EEEEEcCccccccccccCCcc-eee
Q psy10487 297 NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG-EISLDLPEINLATTLSKTDSW-YML 374 (610)
Q Consensus 297 ~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~L~V~~~~~~p~~~~~~~~-~~~ 374 (610)
+|..+............. .....|.|.+++.+|+|.|+|.|.|..|.... .+.|.|.. +|.+...+.. ..+
T Consensus 249 ~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~---~P~~~~~~~~~~~~ 321 (395)
T 1bih_A 249 NGKDVNGNPEDRITRHNR----TSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS---APKYEQKPEKVIVV 321 (395)
T ss_dssp TTEECCCCTTSSEESCSS----STTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE---EEEEEECCCSEEEE
T ss_pred CCEEcCCCCceeEEEEec----CCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc---CCccccCCCcceEe
Confidence 999886543322211111 11137999999999999999999999998765 88888843 3444444433 222
Q ss_pred hhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487 375 VLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ 454 (610)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 454 (610)
..+..+ .+.|.....+.+...|.+.+..-..-.+...++.|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 322 ~~g~~~----------~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 391 (395)
T 1bih_A 322 KQGQDV----------TIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETL 391 (395)
T ss_dssp CTTSCE----------EEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred cCCCeE----------EEEEEECcccCCeeEEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEE
Confidence 222221 1223333333333344333221110012223458999999999999999999999999988887
Q ss_pred ccc
Q psy10487 455 SLA 457 (610)
Q Consensus 455 l~v 457 (610)
|.|
T Consensus 392 l~V 394 (395)
T 1bih_A 392 VQV 394 (395)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 100
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=6.4e-17 Score=165.58 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=151.5
Q ss_pred CcEEEcCCCCCCccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc---------CC
Q psy10487 36 KKSALCKDANFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK---------YL 104 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~---------~l 104 (610)
-+.++..+++++.+|..+. .+|++|+|++|.|+.++.. |. ++++|++|+|++|++....+..+. ++
T Consensus 106 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~--~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IA--SLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp CSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GG--GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-Hh--cCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 3678889999999997664 5899999999999988654 55 689999999999876655555444 59
Q ss_pred CCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccc
Q psy10487 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNL 184 (610)
Q Consensus 105 ~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 184 (610)
++|++|+|++|+|..++ ..|..+++|++|+|++|.++.++. .|..+++|+.|+|++|++....+..|..+++|+.|+|
T Consensus 183 ~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp TTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 99999999999999776 458999999999999999998866 5889999999999999998888888999999999999
Q ss_pred ccccccccCcccccCCCcccEEecCCCccccc
Q psy10487 185 NGNRLKHLSESVFFPTPNLKTLSLDGNPWCCD 216 (610)
Q Consensus 185 ~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~ 216 (610)
++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 99988777777788999999999999986543
No 101
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.70 E-value=5.3e-18 Score=178.23 Aligned_cols=205 Identities=16% Similarity=0.210 Sum_probs=131.7
Q ss_pred CCCCCCCCCCccCCCccc--cccccc------ccCCCceeee---ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEe
Q psy10487 233 SHPLSCTEPGMLQTKHWD--DVKAQE------FACPPNVTIK---ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL 301 (610)
Q Consensus 233 ~~~~~C~a~~~l~g~~~~--~v~~~~------~~c~P~i~~~---~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l 301 (610)
.+.|+|.+.+..+..... .+.... ...+|.+... +....+.+|+.++|.|.+.|.|.|.+.|++++..+
T Consensus 184 ~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~ 263 (404)
T 3p3y_A 184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL 263 (404)
T ss_dssp SSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCC
T ss_pred CcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEEC
Confidence 578999987655432111 111111 1123444332 24567889999999999999999999999999887
Q ss_pred ccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHH
Q psy10487 302 HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVC 381 (610)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~ 381 (610)
...... .. ...+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.. +|.+...+....+..+..+.
T Consensus 264 ~~~~~~-~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---~p~~~~~~~~~~v~~g~~~~ 331 (404)
T 3p3y_A 264 PSDKAK-FE--------NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA---APYWLDEPKNLILAPGEDGR 331 (404)
T ss_dssp CTTTEE-EE--------GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE---EEEEEECCCCEEECTTCCEE
T ss_pred CCCccc-cc--------ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC---CCeeeccCCcceeecCCcEE
Confidence 654321 11 1124899999999999999999999999999999998843 33444444333333222211
Q ss_pred HHHHHHhheeEEEEEEeeecccccccccCCcc----ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 382 VVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMK----QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
+.|.....+.+...|.+.+..- ........++.|.|.+++.+|+|.|+|.|.|..|..+..+.+.|
T Consensus 332 ----------l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 401 (404)
T 3p3y_A 332 ----------LVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401 (404)
T ss_dssp ----------EECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEE
T ss_pred ----------EEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEE
Confidence 1222222222233333221110 01112234568999999999999999999999999999998887
Q ss_pred cc
Q psy10487 458 ME 459 (610)
Q Consensus 458 ~~ 459 (610)
.+
T Consensus 402 ~d 403 (404)
T 3p3y_A 402 LD 403 (404)
T ss_dssp C-
T ss_pred Ee
Confidence 64
No 102
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=4.6e-17 Score=163.58 Aligned_cols=152 Identities=24% Similarity=0.279 Sum_probs=106.0
Q ss_pred CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL 134 (610)
Q Consensus 55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L 134 (610)
.++++|++++|.++.++...+ .+|+.|+|++|.|..+.+..|..+++|++|+|++|+|..++.. ..+++|++|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred CCccEEECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 378999999999999986653 4899999999999999999999999999999998888876542 455666666
Q ss_pred EeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCccc
Q psy10487 135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 135 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~ 214 (610)
+|++|.++.++. .+..+++|+.|+|++|+|+.+.+..|..+.+|+.|+|++|+++.++...|..+++|+.|++++|.+.
T Consensus 83 ~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 666666655533 3455556666666666665555555555556666666666665555555555555555555555543
No 103
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=8.2e-17 Score=178.60 Aligned_cols=131 Identities=21% Similarity=0.378 Sum_probs=98.2
Q ss_pred cEEEcCCCCCCccCccc---CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDANFTALPSTL---DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l---~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
+.++..+..+..+|..+ ..+|++|+|++|.|+.+++..|. ++.+|++|+|++|.|..+.+..|+++++|++|+|+
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 44556666666676543 24678888888888777777776 67788888888888887777777788888888888
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (610)
+|+|..+++..|.++++|++|+|++|.++.+.+..|..+++|+.|+|++|.|..+.
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 88888777777777788888888888887777777777777888887777776654
No 104
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.70 E-value=3.5e-17 Score=171.22 Aligned_cols=182 Identities=18% Similarity=0.213 Sum_probs=120.1
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEeccCCc---cceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLHNSSF---DLLEEEEGDALFEKSVSITLFNVTDLDA 334 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 334 (610)
+|.|.. +.+..+.+|+.++|.|.+.|.|.|.|.|+|+ |..+..... ........ ...+.|.|.+++.+|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~ 75 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ----HGSSSLHIKDVKLSDS 75 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEEC----SSEEEEEEESCCGGGC
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEecc----CCcceEEEcccChhhC
Confidence 355555 6667788899999999999999999999999 888765321 11111100 1246899999999999
Q ss_pred eEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCCc
Q psy10487 335 GEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGKM 412 (610)
Q Consensus 335 G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 412 (610)
|.|+|.|.|..|..+..+.|.|.. +|.+........+..+.. +.+.|..... +...|.+.+..
T Consensus 76 G~Y~C~a~n~~g~~~~~~~l~V~~---~P~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~~~i~W~~~g~~ 140 (389)
T 2jll_A 76 GRYDCEAASRIGGHQKSMYLDIEY---APKFISNQTIYYSWEGNP------------INISCDVKSNPPASIHWRRDKLV 140 (389)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEEE---EEEECCSCCEEEECTTCC------------EEEEECEEEESCCEEEEEETTEE
T ss_pred EEEEEEEEeCCCCcceEEEEEEEe---CCEEecCcceEEeccCCE------------EEEEEEEEecCCCeEEEEECCcc
Confidence 999999999999999999998843 344443333222222221 1223333332 23333332211
Q ss_pred cc-----cc--cccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 413 KQ-----SV--SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 413 ~~-----~~--~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
-. .+ ........|.|.+++.+|+|.|+|.|.|..|..+....+.+.+.|
T Consensus 141 l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P 196 (389)
T 2jll_A 141 LPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP 196 (389)
T ss_dssp SSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCC
T ss_pred CCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCC
Confidence 00 11 111234579999999999999999999999998888887765543
No 105
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.5e-16 Score=161.45 Aligned_cols=165 Identities=23% Similarity=0.369 Sum_probs=136.3
Q ss_pred CcEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 36 KKSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
-+.+++.+.+++.+|. + ..+|++|+|++|.|+.++. +. ++++|++|+|++|.+..+. .|..+++|++|+|+
T Consensus 43 L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT 115 (308)
T ss_dssp CCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred cCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence 4678888888888873 3 3588999999999988876 55 6889999999999988874 58888999999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 193 (610)
+|++..+++ |..+++|++|+|++|.++.+.+ +..+++|+.|+|++|+++.+.+ +..+++|+.|++++|.++.+.
T Consensus 116 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 999888754 8888899999999998888765 7788889999999998888754 778888999999999888876
Q ss_pred cccccCCCcccEEecCCCcccc
Q psy10487 194 ESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 194 ~~~~~~~~~L~~l~l~~N~~~c 215 (610)
. +..+++|+.|++++|.+..
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCB
T ss_pred h--hcCCCCCCEEEccCCccCc
Confidence 5 6778888889998888754
No 106
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=7.3e-17 Score=169.35 Aligned_cols=173 Identities=20% Similarity=0.301 Sum_probs=152.2
Q ss_pred cEEEcCCCCCCccCccc-CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487 37 KSALCKDANFTALPSTL-DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l-~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n 115 (610)
..+.+........+..+ ..+++.|++++|.++.++...|. ++++|++|+|++|.+..+.+.+|..+++|++|+|++|
T Consensus 26 ~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 103 (390)
T 3o6n_A 26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103 (390)
T ss_dssp CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eeeecccccccccccccccCCceEEEecCCchhhCChhHhc--ccccCcEEECCCCcccccChhhccCCCCcCEEECCCC
Confidence 34455554444333333 36899999999999999999888 7899999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195 (610)
Q Consensus 116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 195 (610)
++..+++..|.++++|++|+|++|.++.++...|.++++|+.|+|++|++..+.+..|..+++|+.|++++|.++.+.
T Consensus 104 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 181 (390)
T 3o6n_A 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-- 181 (390)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--
T ss_pred CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--
Confidence 999999999999999999999999999999888899999999999999999998888999999999999999999875
Q ss_pred cccCCCcccEEecCCCccc
Q psy10487 196 VFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 196 ~~~~~~~L~~l~l~~N~~~ 214 (610)
+..+++|+.+++++|.+.
T Consensus 182 -~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 182 -LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp -GGGCTTCSEEECCSSCCS
T ss_pred -cccccccceeeccccccc
Confidence 345678888999888764
No 107
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.70 E-value=3.4e-17 Score=152.95 Aligned_cols=172 Identities=20% Similarity=0.258 Sum_probs=109.4
Q ss_pred ceeeeecceEeecCceEEEEEEEEecCCCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY 340 (610)
Q Consensus 262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 340 (610)
.+...+..+.+.+|+.++|.|.+.|.|. .+.|++ ++..+....+....... ....|.|.+++.+|+|.|+|.
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~ 76 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG------VRSRLTIYNANIEDAGIYRCQ 76 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEET------TEEEEEECSCCGGGCEEEEEE
T ss_pred EEEecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCC------CeEEEEEccCCcccCeEEEEE
Confidence 3556678889999999999999999988 999999 77766544432221111 124899999999999999999
Q ss_pred eecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCCc----c
Q psy10487 341 AENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKM----K 413 (610)
Q Consensus 341 a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~ 413 (610)
|.|..|.. +..+.|.|... |.+...+....+..+..+ .+.|...+.+ ...|.+.... .
T Consensus 77 ~~~~~g~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~------------~l~C~~~g~p~p~v~W~~~~~~~~~~~ 141 (189)
T 2v44_A 77 ATDAKGQTQEATVVLEIYQK---LTFREVVSPQEFKQGEDA------------EVVCRVSSSPAPAVSWLYHNEEVTTIS 141 (189)
T ss_dssp EECTTSCEEEEEEEEEEECC---CEEESCCCSEEEETTSCE------------EECCEEECSSCCEEEEEEEC--CEECC
T ss_pred EEeCCCCcEEEEEEEEEecC---CceeecCCcEEEeCCCCE------------EEEEEECcCCCCcEEEEECCcEEeccC
Confidence 99999876 66778877432 333322222222222221 2222222222 2222221111 0
Q ss_pred ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487 414 QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS 455 (610)
Q Consensus 414 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 455 (610)
........++.|.|.+++.+|+|.|+|.|.|..|.......+
T Consensus 142 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~ 183 (189)
T 2v44_A 142 DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI 183 (189)
T ss_dssp CTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEE
T ss_pred CCCEEEecCCcEEEEEcCcccCeEEEEEEEccccCceeeeeE
Confidence 111112345589999999999999999999998766554444
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.1e-16 Score=162.21 Aligned_cols=165 Identities=24% Similarity=0.332 Sum_probs=148.6
Q ss_pred CcEEEcCCCCCCccCcccC--CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 36 KKSALCKDANFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l~--~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
-+.++..+++++.++. +. .+|++|+|++|.|+.++ .+. .+++|++|+|++|.+..+.+ |..+++|++|+|+
T Consensus 65 L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 65 LIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLD 137 (308)
T ss_dssp CCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECC
Confidence 4789999999998886 43 58999999999999985 455 79999999999999999864 8999999999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 193 (610)
+|++..+.+ |..+++|+.|+|++|.++.+.. +..+++|+.|+|++|+++.+.+ +..+++|+.|+|++|+++.+.
T Consensus 138 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 138 LNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred CCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence 999999876 8899999999999999999876 8899999999999999998864 788999999999999999887
Q ss_pred cccccCCCcccEEecCCCcccc
Q psy10487 194 ESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 194 ~~~~~~~~~L~~l~l~~N~~~c 215 (610)
+ +..+++|+.|++++|++.+
T Consensus 212 ~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 P--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GTTCTTCCEEEEEEEEEEC
T ss_pred c--ccCCCCCCEEEccCCeeec
Confidence 4 7889999999999999865
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.3e-16 Score=152.15 Aligned_cols=125 Identities=23% Similarity=0.304 Sum_probs=84.6
Q ss_pred cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy10487 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN 137 (610)
Q Consensus 58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls 137 (610)
+.++++++.++.++... ..+|++|+|++|++..+.+..|..+++|++|+|++|+|..+++..|..+++|++|+|+
T Consensus 10 ~~v~c~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCCC-----CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 45677777777776443 3367777777777777777777777777777777777777776667777777777777
Q ss_pred CccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487 138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN 187 (610)
Q Consensus 138 ~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 187 (610)
+|.++.+....|..+++|+.|+|++|+|+.+.+..|..+++|+.|++++|
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 77777666666666666666666666666665544555555555555544
No 110
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.69 E-value=9.5e-18 Score=156.45 Aligned_cols=177 Identities=16% Similarity=0.181 Sum_probs=111.2
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+........... ..+.|.|.+++.+|+|.|+|
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C 74 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML-------ANNNLQILNINKSDEGIYRC 74 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEEC-------TTSCEEETTCCGGGCEEEEE
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEe-------cCCCEEEeeCCHhHCcEEEE
Confidence 57777888889999999999999999999999999999887764332222211 12479999999999999999
Q ss_pred EeecCCccee--EEEEEEcCccccccccccCCcc--eeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCC--
Q psy10487 340 YAENIRGNAS--GEISLDLPEINLATTLSKTDSW--YMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGK-- 411 (610)
Q Consensus 340 ~a~N~~G~~~--~~~~L~V~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 411 (610)
.|.|..+... ..+.+.|.. +|.+...... ..+..+.. +.+.|...+. +...|.+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~------------v~l~C~~~g~p~~~v~W~~~g~~~ 139 (189)
T 2v5t_A 75 EGRVEARGEIDFRDIIVIVNV---PPAISMPQKSFNATAERGEE------------MTFSCRASGSPEPAISWFRNGKLI 139 (189)
T ss_dssp EEEETTTTEEEEEEEEEEEEE---EEEEECSCCEEEEETTSCCC------------EEEECEEEEESCCEEEEEETTEEC
T ss_pred EEEEcCCCceEEEEEEEEecC---CCCcccccccccccccCCCc------------EEEEEEEccCCCCeEEEEECCEEC
Confidence 9999976543 445555532 2222221111 11111111 1223333222 2223332221
Q ss_pred -ccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 412 -MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 412 -~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
..........+..|.|.+++.+|+|.|+|.|.|..|..+..+.+.|.
T Consensus 140 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 140 EENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp CCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence 11112223345679999999999999999999999999888887664
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.2e-16 Score=160.65 Aligned_cols=166 Identities=24% Similarity=0.367 Sum_probs=138.2
Q ss_pred CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487 36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~ 114 (610)
-+.+++.+++++.++. ....+|++|+|++|.|+.+++ +. ++++|++|+|++|.+..++. |..+++|++|+|++
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH 121 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence 3678888888888874 123689999999999988876 55 68899999999999888753 88899999999999
Q ss_pred CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194 (610)
Q Consensus 115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 194 (610)
|+|..+ ..+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|+|..+.+ +..+++|+.|++++|.++.++.
T Consensus 122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 122 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp SCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG
T ss_pred CcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh
Confidence 999887 3578889999999999999887 357888999999999999988865 7888999999999999988753
Q ss_pred ccccCCCcccEEecCCCcccc
Q psy10487 195 SVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 195 ~~~~~~~~L~~l~l~~N~~~c 215 (610)
+..+++|+.|++++|++..
T Consensus 196 --l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 --LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GTTCTTCSEEEEEEEEEEC
T ss_pred --hccCCCCCEEECcCCcccC
Confidence 7788899999999988754
No 112
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.69 E-value=6.2e-17 Score=165.71 Aligned_cols=203 Identities=15% Similarity=0.105 Sum_probs=128.0
Q ss_pred CCCC-CCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecC-CCeEEEEeCCEEeccCCccc
Q psy10487 231 LYSH-PLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~-~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~~g~~l~~~~~~~ 308 (610)
.+.+ .|+|.+.+..+..... .....+.-+|.+........+.+|+.+.|.|.+.|.| .|.+.|+|++..+.......
T Consensus 99 ~D~Gs~Y~C~a~n~~g~~~~~-~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~ 177 (329)
T 3oq3_B 99 NDSHRRYLCTVTTKNGDCVQG-IVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY 177 (329)
T ss_dssp GGGGCCEEEEEECTTSCEEEE-EEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSE
T ss_pred HhCCCcEEEEEEeCCCceeeE-EEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceE
Confidence 3677 8999987765431111 1112333456655555555577899999999999999 99999999999885333211
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC--CcceeEE----EEEEcCccccc--cccccCCcceeehhhhHH
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI--RGNASGE----ISLDLPEINLA--TTLSKTDSWYMLVLGISV 380 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~G~~~~~----~~L~V~~~~~~--p~~~~~~~~~~~~~~~~~ 380 (610)
. ...+.|.|.+++.+|+|.|+|.|.|. .|..... +.|.|...+.. |.+ .+....+..+..
T Consensus 178 ~---------~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~--~~~~~~v~~G~~- 245 (329)
T 3oq3_B 178 S---------QSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI--LDPKINVTIGEP- 245 (329)
T ss_dssp E---------EETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE--CCSEEEECTTSC-
T ss_pred e---------cCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee--cCCeeEEecCCC-
Confidence 1 11358999999999999999999997 7654433 66777433211 222 222222222222
Q ss_pred HHHHHHHhheeEEEEEEeeecc---c---ccccccCCc--cc-ccccc-------ccccceeeeeeeeccCc-ceeeeec
Q psy10487 381 CVVSVIVSIGMSFCVCRAHEHK---N---KRRKRKGKM--KQ-SVSFN-------DQEKKLLDVSITTTDRH-TGSCEAL 443 (610)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~--~~-~~~~~-------~~~~~L~i~~v~~~D~G-~Y~C~A~ 443 (610)
+.+.|...+.+ . ..|.+.+.. .. ..... .....|.|.+++.+|+| .|+|.|.
T Consensus 246 -----------~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~ 314 (329)
T 3oq3_B 246 -----------ANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGH 314 (329)
T ss_dssp -----------EEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEE
T ss_pred -----------EEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEE
Confidence 23455555544 2 133332211 00 00000 13567999999999999 9999999
Q ss_pred CCCcceeeeeeccc
Q psy10487 444 GSQPDMELIEQSLA 457 (610)
Q Consensus 444 N~~G~~~~~~~l~v 457 (610)
|..|..+..+.|.+
T Consensus 315 N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 315 NYYFDKTLTTTVVL 328 (329)
T ss_dssp CSSCEEEEEEEEEE
T ss_pred ecCCceEEEEEEEe
Confidence 99999888777654
No 113
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.69 E-value=9.7e-17 Score=155.99 Aligned_cols=177 Identities=20% Similarity=0.212 Sum_probs=113.6
Q ss_pred cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487 268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN 347 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 347 (610)
..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............ ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~ 97 (241)
T 3grw_A 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR-----HQQWSLVMESVVPSDRGNYTCVVENKFGS 97 (241)
T ss_dssp CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeee-----ccceEEEEEeCCcccCEEEEEEEeecCCc
Confidence 4678899999999999999999999999999988655432111100 11248999999999999999999999999
Q ss_pred eeEEEEEEcCcccc-ccccc-cCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCC-cccccc-----
Q psy10487 348 ASGEISLDLPEINL-ATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGK-MKQSVS----- 417 (610)
Q Consensus 348 ~~~~~~L~V~~~~~-~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~----- 417 (610)
....+.|.|..... .|.+. ..+....+..+... .+.|..... +...|.+... .+..+.
T Consensus 98 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v------------~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~ 165 (241)
T 3grw_A 98 IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV------------EFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTP 165 (241)
T ss_dssp EEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCE------------EEEEEEECSSCCEEEEEEECCSSSCSSCTTTCC
T ss_pred eEEEEEEEEeccCCCCceeecCCCccceecCCCEE------------EEEEEEecCCCCEEEEEEcccCCCcccCCCCce
Confidence 88888888854222 12211 11222222222111 222332222 2222322100 111110
Q ss_pred -----------ccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 418 -----------FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 418 -----------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
.......|.|.+++.+|+|.|+|.|.|..|..+....|.|.++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p 220 (241)
T 3grw_A 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220 (241)
T ss_dssp CEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred eeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence 11234579999999999999999999999999999888887654
No 114
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.69 E-value=4.5e-18 Score=178.79 Aligned_cols=214 Identities=17% Similarity=0.123 Sum_probs=134.0
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|+|.+.+...+..........+..+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.........
T Consensus 92 ~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~ 171 (403)
T 3laf_A 92 PDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRV 171 (403)
T ss_dssp SSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSE
T ss_pred CcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEE
Confidence 36788999987554443322222223334677777778889999999999999999999999999999877533221111
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcCcccc---ccccccCCcceeehhhhHHHHHHHH
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEINL---ATTLSKTDSWYMLVLGISVCVVSVI 386 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~ 386 (610)
. ....+.|.|.+++.+|+|.|+|.|.|..|.. ...+.+.|...+. .+.+...+....+..+..+.
T Consensus 172 ~------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~----- 240 (403)
T 3laf_A 172 V------VLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV----- 240 (403)
T ss_dssp E------ECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEE-----
T ss_pred E------EcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEE-----
Confidence 1 1122489999999999999999999998864 3456666532221 11222222222222222211
Q ss_pred HhheeEEEEEEeeecccccccccCCc---cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487 387 VSIGMSFCVCRAHEHKNKRRKRKGKM---KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ 460 (610)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~ 460 (610)
+.|.....+.+...|.+.... .........+..|.|.+++.+|+|.|+|.|.|..|..+....+.|..+
T Consensus 241 -----l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 312 (403)
T 3laf_A 241 -----LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP 312 (403)
T ss_dssp -----ECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred -----EEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECC
Confidence 122222222222223222111 111111234567999999999999999999999999999888888754
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=8.6e-17 Score=151.95 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=131.5
Q ss_pred CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV 133 (610)
Q Consensus 54 ~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~ 133 (610)
..+|+.|+|++|.|+.++ .+. .+++|++|++++|.+..+. .|..+++|++|+|++|++....+..|..+++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIE--YAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGG--GCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred cCCccEEeccCCCccChH--HHh--cCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 358999999999999887 355 6889999999999887774 5889999999999999999866777999999999
Q ss_pred EEeeCccccccCcCcCCCCCCccEEEccCcc-ccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCc
Q psy10487 134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQ-IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212 (610)
Q Consensus 134 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~ 212 (610)
|+|++|.++...+..|..+++|+.|+|++|+ +..+. .+..+++|+.|++++|.++++. .+..+++|+.|++.+|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 9999999998666778899999999999998 88874 5889999999999999999876 57789999999999998
Q ss_pred cc
Q psy10487 213 WC 214 (610)
Q Consensus 213 ~~ 214 (610)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 64
No 116
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.69 E-value=1.1e-17 Score=159.05 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=112.2
Q ss_pred eeeecceEeecCceEEEEEEEEecC----CCeEEEEeC----------------CEEeccC--C-ccceeeccCCceeee
Q psy10487 264 TIKESMVIREAGGNVTMSCYVYGDP----EPTILWLLN----------------GQVLHNS--S-FDLLEEEEGDALFEK 320 (610)
Q Consensus 264 ~~~~~~~~v~~G~~v~l~C~~~g~P----~p~v~W~~~----------------g~~l~~~--~-~~~~~~~~~~~~~~~ 320 (610)
...+..+.+.+|++++|.|.+.+.| .+.+.|+++ +..+... . ..+...... .....
T Consensus 4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~ 82 (214)
T 3jz7_A 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSN-DVKSG 82 (214)
T ss_dssp --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCS-CGGGT
T ss_pred ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEecc-CccCC
Confidence 3455678899999999999999887 579999983 3322210 0 000000000 00012
Q ss_pred eeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEe-e
Q psy10487 321 SVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA-H 399 (610)
Q Consensus 321 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 399 (610)
.+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|...+..+..... ..+..+.. +.+.|.. .
T Consensus 83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~---~~~~~g~~------------v~l~C~~~~ 147 (214)
T 3jz7_A 83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVD---GSEEIGND------------FKLKCEPKE 147 (214)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEE---SCCBTTCC------------EEEEEECSB
T ss_pred cccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeee---cceecCCc------------EEEEecCCC
Confidence 358999999999999999999999999888999988543322221111 11111111 1334443 2
Q ss_pred ecc--cccccccCC---ccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 400 EHK--NKRRKRKGK---MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 400 ~~~--~~~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
..+ ...|.+... ..........++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus 148 g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 212 (214)
T 3jz7_A 148 GSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212 (214)
T ss_dssp CCSSCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred CCCCCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence 222 233333111 111112234456899999999999999999999999999999998874
No 117
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=6e-17 Score=164.65 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=72.6
Q ss_pred CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccc--hh--hhcCCCCCcEEEccCCCCCCC---CcccccC
Q psy10487 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH--RD--TFKYLTILVEVDLSDNQIAWL---HQDTFLG 127 (610)
Q Consensus 55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~--~~--~f~~l~~L~~LdLs~n~l~~l---~~~~f~~ 127 (610)
.+|++|+|++|+|+.+++..|. ++++|++|+|++|.+.... +. .|..+++|++|+|++|+|..+ ....|.+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVR--VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCC--CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred CCCcEEEeeCCCCccchHHHhc--cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence 3455555555555555444444 4455555555555443210 11 124455555555555555422 2223344
Q ss_pred CCCCcEEEeeCccccccCc-CcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEE
Q psy10487 128 NDRLKVLYLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTL 206 (610)
Q Consensus 128 l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l 206 (610)
+++|++|+|++|.++...+ ..+..+++|+.|+|++|+|+.++.. +. ++|+.|+|++|+|++++. +..+++|+.|
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L 301 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG-LP--AKLSVLDLSYNRLDRNPS--PDELPQVGNL 301 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS-CC--SEEEEEECCSSCCCSCCC--TTTSCEEEEE
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh-cc--CCceEEECCCCCCCCChh--HhhCCCCCEE
Confidence 4555555555555555432 2334445555555555555544322 11 455555555555555532 4455555555
Q ss_pred ecCCCccc
Q psy10487 207 SLDGNPWC 214 (610)
Q Consensus 207 ~l~~N~~~ 214 (610)
++++|++.
T Consensus 302 ~L~~N~l~ 309 (312)
T 1wwl_A 302 SLKGNPFL 309 (312)
T ss_dssp ECTTCTTT
T ss_pred eccCCCCC
Confidence 55555543
No 118
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.69 E-value=6.7e-17 Score=149.38 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=106.9
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
+|.+...+....+.+|++++|.|.+.|.|.|. +.|++++..+.... +.|.|.+++.+|+|.|+
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~~----------------~~L~i~~~~~~d~G~Y~ 70 (175)
T 1fnl_A 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----------------SSYFIDAATVNDSGEYR 70 (175)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC----------------SEEEESSCCGGGCEEEE
T ss_pred CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCCc----------------eEEEEeCCCcccCEEEE
Confidence 57788888888999999999999999999887 88999998876432 38999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccc
Q psy10487 339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF 418 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (610)
|.|.|..+.. .+.|.|.. .+.....+......+. . +.+.|.....+......|.+.+..+..
T Consensus 71 C~~~n~~~s~--~~~l~V~~---~~~~~~~~~~~~~~g~-~------------~~l~C~~~~~~~~~~~~W~k~g~~~~~ 132 (175)
T 1fnl_A 71 CQTNLSTLSD--PVQLEVHI---GWLLLQAPRWVFKEED-P------------IHLRCHSWKNTALHKVTYLQNGKDRKY 132 (175)
T ss_dssp EECSSSCCCC--CEEEEEEC---SSEEEECSCSEEETTC-C------------EEEEEEECTTCCCEEEEEEETTEEEEE
T ss_pred EEeeCCcccc--cEEEEEeC---CCceeeCCCceecCCC-C------------EEEEEEcCCCCCceEEEEEECCeEccC
Confidence 9999976644 44555531 1122222221111111 1 234554443332222344444444444
Q ss_pred cccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 419 NDQEKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
...+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 133 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 162 (175)
T 1fnl_A 133 FHHNSDFHIPKATLKDSGSYFCRGLVGSKN 162 (175)
T ss_dssp EEECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCCCCEEEEcccChhhCeEEEEEEEcCCCC
Confidence 456678999999999999999999997664
No 119
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=8.2e-17 Score=161.38 Aligned_cols=178 Identities=24% Similarity=0.299 Sum_probs=140.1
Q ss_pred cEEEcCCCC-CCccC-ccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487 37 KSALCKDAN-FTALP-STL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL 112 (610)
Q Consensus 37 ~~~~C~~~~-l~~lP-~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL 112 (610)
+.++..++. ++.++ ..+ ..+|++|+|++|.|+.+.+..|. ++++|++|+|++|.+..+.+..|..+++|++|+|
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh--CCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 456666664 66663 233 24677777777777777777776 6788888888888888888778888888889999
Q ss_pred cCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccccc
Q psy10487 113 SDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHL 192 (610)
Q Consensus 113 s~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 192 (610)
++|++..+++..|.++++|+.|+|++|.++.+.+..|..+++|+.|+|++|+++.+.+..|..+++|+.|++++|.+...
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 88888888888888899999999999999998888899999999999999999999988899999999999999998754
Q ss_pred CcccccCCCcccEEecCCCcccccC
Q psy10487 193 SESVFFPTPNLKTLSLDGNPWCCDC 217 (610)
Q Consensus 193 ~~~~~~~~~~L~~l~l~~N~~~c~c 217 (610)
.... +-+..++.+....+.+.|.-
T Consensus 241 ~~~~-~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 241 CRAR-PLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp GGGH-HHHHHHHHCCSEECCCBEEE
T ss_pred CCcH-HHHHHHHhcccccCccccCC
Confidence 3311 11233455566677777753
No 120
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.69 E-value=8.6e-17 Score=175.47 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=138.0
Q ss_pred CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487 36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n 115 (610)
.+.++|++++++.+|..++.++++|+|++|.|+.+.+..|. ++.+|++|+|++|.|..+.+.+|.++++|++|||++|
T Consensus 2 ~~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CCEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred cceEecCCCCcccccccccccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 36899999999999999999999999999999999998998 7999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCcEEEeeCccccccC-cCcCCCCCCccEEEccCccccccCHHHhhcCccc--cccccccccc--c
Q psy10487 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELR-AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL--ESLNLNGNRL--K 190 (610)
Q Consensus 116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~ 190 (610)
+|..++.. .+++|++|+|++|.++.+. +..|.++++|+.|+|++|+|.. ..+..+.+| +.|++++|.+ .
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 99988765 7899999999999999864 4679999999999999999976 356677777 9999999998 4
Q ss_pred ccCcccccC
Q psy10487 191 HLSESVFFP 199 (610)
Q Consensus 191 ~~~~~~~~~ 199 (610)
...+..+..
T Consensus 154 ~~~~~~l~~ 162 (520)
T 2z7x_B 154 KEDPEGLQD 162 (520)
T ss_dssp SCCTTTTTT
T ss_pred ccccccccc
Confidence 444433433
No 121
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.69 E-value=3.8e-17 Score=151.12 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=107.5
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
+|.+...+..+.+.+|++++|.|.+.+.|.| .+.|++++..+.... +.|.|.+++.+|+|.|+
T Consensus 4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----------------~~L~i~~v~~~d~G~Y~ 67 (176)
T 1f2q_A 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------------SSLNIVNAKFEDSGEYK 67 (176)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS----------------SEEEECSCCGGGCEEEE
T ss_pred CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCc----------------eEEEEeccceecCEEEE
Confidence 5788888888899999999999999999886 699999998776432 38999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccc
Q psy10487 339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF 418 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (610)
|.|.|..+..... |.|.. .+.....+......+ .. +.+.|............|.+.+..+..
T Consensus 68 C~~~~~~~s~~~~--l~V~~---~~~~~~~~~~~~~~g-~~------------~~l~C~~~~~~p~~~~~W~~~g~~~~~ 129 (176)
T 1f2q_A 68 CQHQQVNESEPVY--LEVFS---DWLLLQASAEVVMEG-QP------------LFLRCHGWRNWDVYKVIYYKDGEALKY 129 (176)
T ss_dssp EECTTSSCCCCEE--EEEEC---SSEEEEESCSEEETT-SC------------EEEEEEEGGGCCEEEEEEEETTEECCS
T ss_pred EEcCCccccccEE--EEEeC---cceeecCCcceeeCC-CC------------EEEEEEecCCCCceEEEEEECCEEEee
Confidence 9999977655444 44421 111111122111111 11 133444322221112333333333334
Q ss_pred cccccceeeeeeeeccCcceeeeecCCCcc-eeeeeecccccC
Q psy10487 419 NDQEKKLLDVSITTTDRHTGSCEALGSQPD-MELIEQSLAMEQ 460 (610)
Q Consensus 419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v~~~ 460 (610)
...+..|.|.+++.+|+|.|+|.|.|..|. .+....+.|..+
T Consensus 130 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 172 (176)
T 1f2q_A 130 WYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA 172 (176)
T ss_dssp CCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred ecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecC
Confidence 455678999999999999999999997544 333355555543
No 122
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.68 E-value=8.4e-17 Score=175.60 Aligned_cols=209 Identities=15% Similarity=0.109 Sum_probs=130.0
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeec---ceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKES---MVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSF 306 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~---~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~ 306 (610)
.+.+.|+|.+.+..+.... .+... +..+|.+...+. ...+.+|+.++|.|.+.|.|.|. +.|+++|..+.....
T Consensus 283 ~D~G~Y~C~a~n~~g~~~~-~~~l~-V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~ 360 (524)
T 2ec8_A 283 NDSGVFMCYANNTFGSANV-TTTLE-VVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE 360 (524)
T ss_dssp TTCEEEEEEEECSSCEEEE-EEEEE-EESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBC
T ss_pred HHCEEEEEEEEecCCceEE-EEEEE-EeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCcc
Confidence 4667899998775543322 22222 235677766553 68889999999999999999999 999999998876553
Q ss_pred cceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHH
Q psy10487 307 DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI 386 (610)
Q Consensus 307 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 386 (610)
.......+ +.....+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.. +|.+...... ..+
T Consensus 361 ~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~---~P~i~~~~~~---~~g--------- 424 (524)
T 2ec8_A 361 DYPKSENE-SNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT---KPEILTYDRL---VNG--------- 424 (524)
T ss_dssp CEESCCSS-SCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE---EEEEEEEECC---SSS---------
T ss_pred ceeEEccC-CCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec---CCeEeecccC---cCc---------
Confidence 22222221 1123457999999999999999999999999999999999843 3333322221 011
Q ss_pred HhheeEEEEEEeeecccccccccCCcc----------cc---ccccccccceee---eeee-eccCcceeeeecCCCcce
Q psy10487 387 VSIGMSFCVCRAHEHKNKRRKRKGKMK----------QS---VSFNDQEKKLLD---VSIT-TTDRHTGSCEALGSQPDM 449 (610)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~L~i---~~v~-~~D~G~Y~C~A~N~~G~~ 449 (610)
.+.|.....+.+...|.+..... .. ......++.+.+ .++. .+|+|.|+|.|.|..|..
T Consensus 425 ----~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~ 500 (524)
T 2ec8_A 425 ----MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT 500 (524)
T ss_dssp ----CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEE
T ss_pred ----EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCce
Confidence 23455444444444444432110 00 011133444543 3333 589999999999999999
Q ss_pred eeeeecccccCC
Q psy10487 450 ELIEQSLAMEQP 461 (610)
Q Consensus 450 ~~~~~l~v~~~p 461 (610)
+..+.|.|.|++
T Consensus 501 ~~~~~l~V~e~~ 512 (524)
T 2ec8_A 501 SAYFNFAFKGNN 512 (524)
T ss_dssp ECCCCCCC----
T ss_pred EEEEEEEEecCC
Confidence 999999988754
No 123
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.68 E-value=6.4e-17 Score=152.41 Aligned_cols=167 Identities=15% Similarity=0.098 Sum_probs=107.2
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+.. .+.+|++++|.|.+.| |.+.+.|+|++..+....... ... ...+.|.|.+++.+|+|.|+|
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~--~~~-----~~~~~L~i~~v~~~D~G~Y~C 75 (196)
T 3p2t_A 5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNP--LEP-----KNKARFSIPSMTEDYAGRYRC 75 (196)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECC--CSS-----SSEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccccccc--ccC-----CceEEEEeccCCcccCceEEE
Confidence 5777777776 8899999999999999 789999999998765322110 000 123589999999999999999
Q ss_pred EeecCCc--ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc-cccccccCCcccc-
Q psy10487 340 YAENIRG--NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK-NKRRKRKGKMKQS- 415 (610)
Q Consensus 340 ~a~N~~G--~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 415 (610)
.|.|..| ..+..+.|.|.....+|.+...+......+ ..+ .+.|.....+ ...|.+.+.....
T Consensus 76 ~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G-~~v------------~L~C~~~~~~~~~~w~k~g~~~~~~ 142 (196)
T 3p2t_A 76 YYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSG-KSV------------TLLCQSRSPMDTFLLCKERAAHPLL 142 (196)
T ss_dssp EEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTT-CCE------------EEEEEEEEEEEEEEEEETTCCCGGG
T ss_pred EEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCC-CeE------------EEEEecCCCCCEEEEEeCCCcccce
Confidence 9999998 345677777754444444444333222111 111 2233322211 1112221111000
Q ss_pred -----ccccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 416 -----VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 416 -----~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
.......+.|.|.+++.+|+|.|+|.|.|..+.
T Consensus 143 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 180 (196)
T 3p2t_A 143 CLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSH 180 (196)
T ss_dssp SEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGT
T ss_pred eecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCC
Confidence 011234568999999999999999999998874
No 124
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.2e-16 Score=177.34 Aligned_cols=173 Identities=20% Similarity=0.291 Sum_probs=151.8
Q ss_pred cEEEcCCCCCCccCccc-CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487 37 KSALCKDANFTALPSTL-DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l-~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n 115 (610)
..++|....+...+..+ ..+++.|++++|.+..++...|. ++++|+.|+|++|.|..+.+.+|..+++|++|+|++|
T Consensus 32 ~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 109 (597)
T 3oja_B 32 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109 (597)
T ss_dssp CEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC
Confidence 34555554443333333 36899999999999999999888 7999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195 (610)
Q Consensus 116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 195 (610)
.|..+++..|.++++|++|+|++|.++.+++..|.++++|+.|+|++|.|..+.+..|..+++|+.|+|++|.++.++.
T Consensus 110 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~- 188 (597)
T 3oja_B 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL- 188 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG-
T ss_pred cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh-
Confidence 9999999999999999999999999999999889999999999999999999998899999999999999999998854
Q ss_pred cccCCCcccEEecCCCccc
Q psy10487 196 VFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 196 ~~~~~~~L~~l~l~~N~~~ 214 (610)
..+++|+.|++++|.+.
T Consensus 189 --~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 189 --SLIPSLFHANVSYNLLS 205 (597)
T ss_dssp --GGCTTCSEEECCSSCCS
T ss_pred --hhhhhhhhhhcccCccc
Confidence 44667888888888764
No 125
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.68 E-value=2.2e-17 Score=156.82 Aligned_cols=187 Identities=18% Similarity=0.144 Sum_probs=107.3
Q ss_pred CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc--cceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF--DLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
..+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+..... ...............+.|.|.+++.+|+|.|+
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~ 81 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT 81 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEE
Confidence 4556667888999999999999999999999999998765321100 00000011111122368999999999999999
Q ss_pred EEeecCCc--ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHH-HHhheeEEEEEEeeec-ccccccc--cCCc
Q psy10487 339 CYAENIRG--NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSV-IVSIGMSFCVCRAHEH-KNKRRKR--KGKM 412 (610)
Q Consensus 339 C~a~N~~G--~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~--~~~~ 412 (610)
|.|.|..| .....+.|.|...+..+.... ...+..+..+.+.|. +.+.+...+.|.+... .-..... ....
T Consensus 82 C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~ 158 (212)
T 1f97_A 82 CMVSEEGGQNYGEVSIHLTVLVPPSKPTISV---PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFM 158 (212)
T ss_dssp EEEEETTSSSEEEEEEEEEEEBCCCCCEEEC---CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCS
T ss_pred EEEEccCCCcccEEEEEEEEEcCCCCcccCC---ccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccccccccc
Confidence 99999987 456677777743332222211 111111111111111 1111111222222211 1100000 0000
Q ss_pred cccccccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487 413 KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME 450 (610)
Q Consensus 413 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 450 (610)
............|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 159 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 196 (212)
T 1f97_A 159 NSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAM 196 (212)
T ss_dssp SSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCE
T ss_pred CceeEecCCCceEEEEecChhhCcEEEEEEccccCCcc
Confidence 01112224567899999999999999999999999873
No 126
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=4.5e-17 Score=175.91 Aligned_cols=173 Identities=20% Similarity=0.233 Sum_probs=141.0
Q ss_pred cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCC
Q psy10487 37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~ 116 (610)
..++.+++.++.+|.. .+|++|+|++|.|+.++.. .+++|+.|+|++|.|..+.+..|+.+++|++|+|++|+
T Consensus 83 ~~L~Ls~N~l~~l~~~--~~L~~L~L~~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 83 RTLDLNNNYVQELLVG--PSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp CEEECCSSEEEEEEEC--TTCCEEECCSSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred CEEEecCCcCCCCCCC--CCcCEEECcCCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence 3444444445444422 4566666666666665543 36789999999999999998899999999999999999
Q ss_pred CCCCCccccc-CCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487 117 IAWLHQDTFL-GNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195 (610)
Q Consensus 117 l~~l~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 195 (610)
|..+.+..|. .+++|+.|+|++|.++.+.. +..+++|+.|+|++|+|+.+++. |..+++|+.|+|++|.+++++..
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT
T ss_pred CCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh
Confidence 9998777776 78999999999999999865 44689999999999999999765 88899999999999999998764
Q ss_pred cccCCCcccEEecCCCcccccCCch
Q psy10487 196 VFFPTPNLKTLSLDGNPWCCDCHLR 220 (610)
Q Consensus 196 ~~~~~~~L~~l~l~~N~~~c~c~l~ 220 (610)
+..+++|+.|++++|++.|++...
T Consensus 233 -l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 233 -LRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp -CCCCTTCCEEECTTCCBCHHHHHH
T ss_pred -hccCCCCCEEEcCCCCCcCcchHH
Confidence 677899999999999999876433
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=153.87 Aligned_cols=125 Identities=24% Similarity=0.373 Sum_probs=85.7
Q ss_pred cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccc-hhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEe
Q psy10487 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH-RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYL 136 (610)
Q Consensus 58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~-~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~L 136 (610)
+.|++++|.++.++.... ..+++|+|++|.|..+. ...|..+++|++|+|++|+|+.+.+..|.++++|++|+|
T Consensus 14 ~~l~~s~n~l~~iP~~~~-----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP-----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCccCCC-----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 468888888888775432 24677888888777774 345777777777777777777777666777777777777
Q ss_pred eCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487 137 NGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN 187 (610)
Q Consensus 137 s~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 187 (610)
++|.++.+.+..|..+++|+.|+|++|+|+.+.+..|..+.+|+.|+|++|
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 777777666666666666666666666666665555555555555555555
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.6e-16 Score=157.30 Aligned_cols=163 Identities=22% Similarity=0.307 Sum_probs=141.2
Q ss_pred EEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCC
Q psy10487 39 ALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117 (610)
Q Consensus 39 ~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l 117 (610)
+++..++++.++. .-..+|+.|++++|.|+.++ .+. .+++|++|+|++|.|..+.+ |..+++|++|+|++|+|
T Consensus 24 l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 24 QNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred HHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence 4456677777762 12358999999999999987 455 68999999999999999987 99999999999999999
Q ss_pred CCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccc
Q psy10487 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVF 197 (610)
Q Consensus 118 ~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 197 (610)
..++. +.. .+|+.|+|++|.++.+. .+..+++|+.|+|++|+|+.+. .+..+++|+.|++++|+++.+ ..+
T Consensus 98 ~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l 168 (263)
T 1xeu_A 98 KNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGL 168 (263)
T ss_dssp SCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred CCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHh
Confidence 99875 333 89999999999999985 4889999999999999999984 688999999999999999998 467
Q ss_pred cCCCcccEEecCCCccccc
Q psy10487 198 FPTPNLKTLSLDGNPWCCD 216 (610)
Q Consensus 198 ~~~~~L~~l~l~~N~~~c~ 216 (610)
..+++|+.|++++|++.+.
T Consensus 169 ~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCCCCCEEEEEEEEEECC
T ss_pred ccCCCCCEEeCCCCcccCC
Confidence 8899999999999998765
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=3e-16 Score=144.46 Aligned_cols=132 Identities=28% Similarity=0.466 Sum_probs=104.6
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc
Q psy10487 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG 186 (610)
Q Consensus 107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 186 (610)
.++|++++|+|..++... ..+|++|+|++|.|+.+.+..|..+++|+.|+|++|+|+.+.+..|..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777777777776543 26777888888888888777788888888888888888888777778888888888888
Q ss_pred ccccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhccC--------CCCCCCCCCC
Q psy10487 187 NRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSKL--------YSHPLSCTEP 241 (610)
Q Consensus 187 n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~l--------~~~~~~C~a~ 241 (610)
|+|+.++...|..+++|+.|++++|+|.|+|. +.++..|+..... +...+.|..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~ 151 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT 151 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC
Confidence 88888888888889999999999999999995 9999999986431 3346678654
No 130
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=174.98 Aligned_cols=219 Identities=10% Similarity=0.057 Sum_probs=131.6
Q ss_pred CCCCCCCCCCCCccCCCc-c-ccccccc---ccCCCceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeCCEEecc
Q psy10487 231 LYSHPLSCTEPGMLQTKH-W-DDVKAQE---FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHN 303 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~-~-~~v~~~~---~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~ 303 (610)
.+.+.|.|.+.+..+... + ..+.... ...+|.+...+....+.+|+.++|.|.+.|.|+| .|+|+++|..+..
T Consensus 80 ~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 159 (523)
T 2rcj_C 80 EDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKA 159 (523)
T ss_pred hhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCC
Confidence 467889999887543211 1 1111111 1346777777777777789999999999998765 8999999988765
Q ss_pred CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC-ccccccccccCCcceeehhhhHHHH
Q psy10487 304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP-EINLATTLSKTDSWYMLVLGISVCV 382 (610)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~-~~~~~p~~~~~~~~~~~~~~~~~~~ 382 (610)
...........++.+...+.|.|.+++.+|+|.|+|.|.|..|....++.+.+. ....+|.+...........+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~-- 237 (523)
T 2rcj_C 160 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTA-- 237 (523)
T ss_pred ceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCce--
Confidence 432221122223334445689999999999999999999999987776665331 12223333211111111111221
Q ss_pred HHHHHhheeEEEEEEeeec-c---cccccccCCccc-----ccccc----ccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487 383 VSVIVSIGMSFCVCRAHEH-K---NKRRKRKGKMKQ-----SVSFN----DQEKKLLDVSITTTDRHTGSCEALGSQPDM 449 (610)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~-----~~~~~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 449 (610)
.+.|...+. + ...|.+.+.... .+... .....|.|.+++.+| |.|+|.|.|..|..
T Consensus 238 ----------~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~ 306 (523)
T 2rcj_C 238 ----------ALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 306 (523)
T ss_pred ----------EEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc
Confidence 223333222 1 122322221100 00000 112379999999999 99999999999998
Q ss_pred eeeeecccccCCC
Q psy10487 450 ELIEQSLAMEQPP 462 (610)
Q Consensus 450 ~~~~~l~v~~~pp 462 (610)
.....+.+...|+
T Consensus 307 ~~~~~l~v~~~P~ 319 (523)
T 2rcj_C 307 KVDKRVEPLSLPS 319 (523)
T ss_pred ceEEecCCCcCce
Confidence 8888877665543
No 131
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.67 E-value=3e-17 Score=171.62 Aligned_cols=204 Identities=15% Similarity=0.151 Sum_probs=126.1
Q ss_pred CC-CCCCCCCCCccCCCcccccc--cccccCC-----Cce-eeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEec
Q psy10487 232 YS-HPLSCTEPGMLQTKHWDDVK--AQEFACP-----PNV-TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLH 302 (610)
Q Consensus 232 ~~-~~~~C~a~~~l~g~~~~~v~--~~~~~c~-----P~i-~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~ 302 (610)
+. +.|+|.+.+...+....... ...+..+ |.+ ........+.+|+.++|.|.+.|.|.|.+.|++++..+.
T Consensus 175 d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~ 254 (388)
T 2v5m_A 175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTT 254 (388)
T ss_dssp GGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSS
T ss_pred ccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCc
Confidence 45 88999987765443211110 0011111 111 111234567889999999999999999999999754322
Q ss_pred cCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHH
Q psy10487 303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCV 382 (610)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~ 382 (610)
.... .. .........+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|... |.+...+....+..+..
T Consensus 255 ~~~~---~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~---p~~~~~~~~~~v~~g~~--- 324 (388)
T 2v5m_A 255 RKQA---VV-LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP---LSAKIDPPTQTVDFGRP--- 324 (388)
T ss_dssp CEEE---CC-CSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE---EEEEEESSEEEECTTSC---
T ss_pred cccc---cc-ccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCC---CccccCCCcEEecCCCC---
Confidence 1100 00 00001123458999999999999999999999999988888888532 22322232222222211
Q ss_pred HHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 383 VSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
+.+.|...+.+... ..|.+.+..+ ...++.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 325 ---------~~l~C~~~g~p~p~-i~W~~~g~~i--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 325 ---------AVFTCQYTGNPIKT-VSWMKDGKAI--GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp ---------EEEEEEEEEECCCE-EEEEETTEEC--SCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred ---------EEEEEEeccccCCe-EEEEECCEEC--ccCCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 13344444333321 3333333322 234578999999999999999999999999999888764
No 132
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=159.77 Aligned_cols=205 Identities=14% Similarity=0.089 Sum_probs=125.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCc-eeeeecceEeecCceEEEEEEEEecCC--CeEEEEeC-CEEeccCCc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN-VTIKESMVIREAGGNVTMSCYVYGDPE--PTILWLLN-GQVLHNSSF 306 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~-i~~~~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~-g~~l~~~~~ 306 (610)
.+.+.|+|.+.+..+.. ...+..... .+|. +...+....+.+|+.++|.|.+.+ |. |.+.|+++ +..+.....
T Consensus 61 ~d~G~Y~C~~~n~~~~~-~~~~~l~V~-~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~ 137 (292)
T 4dkd_C 61 QNTGTYRCTEPGDPLGG-SAAIHLYVK-DPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTN 137 (292)
T ss_dssp GGCSCEEECCCC----C-CEEECCEEC-CSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCC
T ss_pred ccCEEEEEEEccCCCCc-ceEEEEEEc-CccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCc
Confidence 46788999987765433 222332222 2333 455667788999999999999998 55 78999997 444432221
Q ss_pred cceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcCcccc-ccccccCCcceeehhhhHHHHHH
Q psy10487 307 DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEINL-ATTLSKTDSWYMLVLGISVCVVS 384 (610)
Q Consensus 307 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~-~p~~~~~~~~~~~~~~~~~~~~~ 384 (610)
... ...+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..... +|.+...+....+..+..
T Consensus 138 -~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~----- 203 (292)
T 4dkd_C 138 -YSF--------SPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEA----- 203 (292)
T ss_dssp -EEC--------CSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSC-----
T ss_pred -ccc--------cCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCC-----
Confidence 111 112359999999999999999999998865 3477888754222 444444443332222211
Q ss_pred HHHhheeEEEEEEeeecccccccccCCccccccc----------cccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487 385 VIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF----------NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ 454 (610)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 454 (610)
+.+.|.....+......|.+.+..+.. ......|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus 204 -------v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 276 (292)
T 4dkd_C 204 -------AQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276 (292)
T ss_dssp -------EEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEE
T ss_pred -------EEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEE
Confidence 133444433332111222222221110 123347999999999999999999999999999888
Q ss_pred ccccc
Q psy10487 455 SLAME 459 (610)
Q Consensus 455 l~v~~ 459 (610)
|.|..
T Consensus 277 l~V~~ 281 (292)
T 4dkd_C 277 FRVVE 281 (292)
T ss_dssp ECC--
T ss_pred EEEee
Confidence 88775
No 133
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.67 E-value=5.1e-16 Score=146.72 Aligned_cols=177 Identities=11% Similarity=0.026 Sum_probs=108.8
Q ss_pred eeeecceEeecCceEEEEEEEEecCC-----CeEEEEeCCEEe-ccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 264 TIKESMVIREAGGNVTMSCYVYGDPE-----PTILWLLNGQVL-HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 264 ~~~~~~~~v~~G~~v~l~C~~~g~P~-----p~v~W~~~g~~l-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
...+..+.+.+|++++|.|.+.+.|. +.+.|++++... ....+.... .+. .....+.|.|.+++.+|+|.|
T Consensus 6 ~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~-~~~--~~~~~~~L~I~~v~~~D~G~Y 82 (202)
T 3bp6_B 6 TAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLL-EEQ--LPLGKALFHIPSVQVRDSGQY 82 (202)
T ss_dssp ECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEEC-GGG--GGGTEEEEEECSCCGGGCEEE
T ss_pred ecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEe-ecc--ccCCeeEEEECCCCHHHCcEE
Confidence 33445678999999999999999987 899999944333 222221111 110 001235899999999999999
Q ss_pred EEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee--cccccccccCCcccc
Q psy10487 338 TCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE--HKNKRRKRKGKMKQS 415 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 415 (610)
+|.|.|..|.....+.|.|......|.+.. ..... ...+.+.|...+ .+...|.+.......
T Consensus 83 ~C~~~~~~~~~~~~~~l~V~~~~~~p~~~~----~~~~~------------g~~v~l~C~~~g~P~p~v~W~~~~~~~~~ 146 (202)
T 3bp6_B 83 RCLVICGAAWDYKYLTVKVKASYMRIDTRI----LEVPG------------TGEVQLTCQARGYPLAEVSWQNVSVPANT 146 (202)
T ss_dssp EEEEEETTEEEEEEEEEEEEBCCCCEEEEE----EECTT------------TCCEEEEEEEEEBSCCEEEETTCCSCCEE
T ss_pred EEEEEeCCCcceEEEEEEecCCCCcccEEE----EecCC------------CCeEEEEEEccccCCceEEEEeCCCCccC
Confidence 999999999888888888854332222211 00111 111233444433 334344432221111
Q ss_pred ccccccc---cceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 416 VSFNDQE---KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 416 ~~~~~~~---~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
......+ ..+.+.++..+|+|.|+|.|.|..|..+..+.+.+.+
T Consensus 147 ~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~ 193 (202)
T 3bp6_B 147 SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLS 193 (202)
T ss_dssp EEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC--
T ss_pred ceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecC
Confidence 1111122 3456678888999999999999999999888887754
No 134
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=1.7e-16 Score=181.24 Aligned_cols=177 Identities=17% Similarity=0.082 Sum_probs=109.5
Q ss_pred cEEEcCCCCCC-ccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDANFT-ALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~~l~-~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
+.++..++.++ .+|..+ ..+|++|+|++|+++...+..|. ++++|++|+|++|.+....+..|+.+++|++|+|+
T Consensus 445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 45666666666 555544 24677777777777765555665 56677777777777776666667777777777777
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCccccccCc-----------------------------------------------
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA----------------------------------------------- 146 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~----------------------------------------------- 146 (610)
+|++....+..|..+++|+.|+|++|.+.+..+
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 777765555666666666666666665542111
Q ss_pred -----------------------CcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcc
Q psy10487 147 -----------------------GQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203 (610)
Q Consensus 147 -----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 203 (610)
..|..+++|+.|+|++|++++..|..|+++++|+.|+|++|++++..+..+..++.|
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 682 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence 112334556666666666665555566666666666666666665555555566666
Q ss_pred cEEecCCCcccc
Q psy10487 204 KTLSLDGNPWCC 215 (610)
Q Consensus 204 ~~l~l~~N~~~c 215 (610)
+.|++++|.+..
T Consensus 683 ~~LdLs~N~l~g 694 (768)
T 3rgz_A 683 NILDLSSNKLDG 694 (768)
T ss_dssp CEEECCSSCCEE
T ss_pred CEEECCCCcccC
Confidence 666666666554
No 135
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.67 E-value=1.8e-16 Score=151.50 Aligned_cols=173 Identities=12% Similarity=0.041 Sum_probs=104.7
Q ss_pred eecceEeecC--ceEEEEEEEEecCCCeEEEEeC---CEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487 266 KESMVIREAG--GNVTMSCYVYGDPEPTILWLLN---GQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY 340 (610)
Q Consensus 266 ~~~~~~v~~G--~~v~l~C~~~g~P~p~v~W~~~---g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 340 (610)
.+..+.+.+| ++++|.|.+.+ |.|.++|+++ +..+..... ...+ ..+.|.|.+++.+|+|.|+|.
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~--~~~~-------~~~~l~I~~v~~~D~G~Y~C~ 82 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNR--ISWD-------SKKGFTIPSYMISYAGMVFCE 82 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSS--CEEE-------TTTEEEEEGGGTTTCSEEEEE
T ss_pred CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCc--cccc-------CCccEEEccCChhcCceEEEE
Confidence 4577888999 99999999987 8899999884 555443321 1111 123799999999999999999
Q ss_pred eecCCcceeE-EEEEEcCcccccccccc-CCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc----cccccccCCccc
Q psy10487 341 AENIRGNASG-EISLDLPEINLATTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK----NKRRKRKGKMKQ 414 (610)
Q Consensus 341 a~N~~G~~~~-~~~L~V~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 414 (610)
|.|..+.... .+.|.|.. ...|.+.. ......+..+..+ .+.|.....+ ...|.+.+....
T Consensus 83 a~n~~~~~~s~~~~l~v~~-~~~p~~~~~~~~~~~v~~G~~v------------~L~C~~~g~p~~~~~i~W~~~g~~~~ 149 (213)
T 2x1w_L 83 AKINDESYQSIMYIVVVVG-YRIYDVVLSPSHGIELSVGEKL------------VLNCTARTELNVGIDFNWEYPSSKHQ 149 (213)
T ss_dssp EC----CEECCCEEEEECB-CCEEEEEEESCSCEEEETTCCE------------EEEEEEEECTTBCCEEEEECSCSSCC
T ss_pred EEECCeeEEEEEEEEEEeC-CcccceEEcCCCCeEEcCCCCE------------EEEEEEECCCCCceEEEEEecCCccc
Confidence 9996554333 36777743 12222222 2222122222221 2334433321 123322221100
Q ss_pred cccc-------------cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 415 SVSF-------------NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 415 ~~~~-------------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
.... ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p 209 (213)
T 2x1w_L 150 HKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209 (213)
T ss_dssp SEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred eEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence 0000 1223469999999999999999999999999999999998765
No 136
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.66 E-value=1.6e-16 Score=158.85 Aligned_cols=208 Identities=14% Similarity=0.113 Sum_probs=128.4
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEe-CCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLL-NGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~-~g~~l~~~~~~~ 308 (610)
.+.+.|+|.+.+..+.. ...+......-+..+...+....+.+|+.+.|.|.+.|.|.+. +.|++ ++..+..... .
T Consensus 61 ~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~-~ 138 (289)
T 3ejj_X 61 KNTGTYRCTELEDPMAG-STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTV-Y 138 (289)
T ss_dssp GGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCC-E
T ss_pred ccCEEEEEEEeccCCcc-eeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCcc-E
Confidence 46788999987655442 2222222222222256666788899999999999999988776 99986 5655543322 1
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCeEEEEEee-cCCcceeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHH
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE-NIRGNASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVI 386 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-N~~G~~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ 386 (610)
.. ...+.|.|.+++.+|+|.|+|.|. |..|..+..+.|.|.... .+|.+...+....+..+..
T Consensus 139 ~~--------~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~------- 203 (289)
T 3ejj_X 139 FF--------SPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEA------- 203 (289)
T ss_dssp EE--------ETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSC-------
T ss_pred EE--------CCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCc-------
Confidence 11 122479999999999999999999 666667778888885322 3444444443333222221
Q ss_pred HhheeEEEEEEeee---cccccccccCCcccc-------ccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487 387 VSIGMSFCVCRAHE---HKNKRRKRKGKMKQS-------VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL 456 (610)
Q Consensus 387 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 456 (610)
+.+.|.... .+...|.+.+..-.. .........|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 204 -----~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~ 278 (289)
T 3ejj_X 204 -----AQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278 (289)
T ss_dssp -----EEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEE
T ss_pred -----EEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEE
Confidence 122333332 222233322211100 11112356899999999999999999999999999999998
Q ss_pred cccC
Q psy10487 457 AMEQ 460 (610)
Q Consensus 457 v~~~ 460 (610)
+.+.
T Consensus 279 ~~~~ 282 (289)
T 3ejj_X 279 VVES 282 (289)
T ss_dssp CC--
T ss_pred EEec
Confidence 8764
No 137
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=165.71 Aligned_cols=182 Identities=10% Similarity=0.102 Sum_probs=97.7
Q ss_pred cccCC-----CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecC
Q psy10487 256 EFACP-----PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVT 330 (610)
Q Consensus 256 ~~~c~-----P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 330 (610)
+|.|. +.+...+..+.+.+|+++.|.|.+.|.|.|.|.|++++..+..... ..... .....|.|.+++
T Consensus 39 ~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~---~~~~~----~~~~sL~I~~v~ 111 (423)
T 3qs7_E 39 DLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH---FDLQN----RGVVSMVILKMT 111 (423)
T ss_dssp -----------------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB---C---------CEEEEEESSCC
T ss_pred HcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccce---ecccc----ceEEEEEEeecC
Confidence 36672 3455666788999999999999999999999999999987654321 00011 122479999999
Q ss_pred CCCCeEEEEEeecCCcceeEEEEEEcCccccccccc-cCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccccccccc
Q psy10487 331 DLDAGEYTCYAENIRGNASGEISLDLPEINLATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRK 409 (610)
Q Consensus 331 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (610)
.+|+|.|+|.|.|..|.....+.|.|... |.+. ..+.. ...+. .. .+.|.....+.+...|.+.
T Consensus 112 ~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~---p~~~~~~p~~-~~~~~-~~----------~L~C~a~G~P~P~i~W~k~ 176 (423)
T 3qs7_E 112 ETQAGEYLLFIQSEATNYTILFTVSIRNT---LLYTLRRPYF-RKMEN-QD----------ALVCISESVPEPIVEWVLC 176 (423)
T ss_dssp SSSCSEEEEEEEC--CEEEEEEEEEEC--------CEEEEEE-EECSS-SS----------CEEEEEEESSCCEEEEEEC
T ss_pred cccCEEEEEEEEcCCCcEEEEEEEEEecC---ccccccCCcE-eccCC-ce----------EEEEEEeeecCCeEEEEEC
Confidence 99999999999999999999999988522 2221 11111 11111 11 1133333333333334332
Q ss_pred CCccccccccccccceeeee-eeeccCcceeeeecCCCcceeee-eeccccc
Q psy10487 410 GKMKQSVSFNDQEKKLLDVS-ITTTDRHTGSCEALGSQPDMELI-EQSLAME 459 (610)
Q Consensus 410 ~~~~~~~~~~~~~~~L~i~~-v~~~D~G~Y~C~A~N~~G~~~~~-~~l~v~~ 459 (610)
.................... +...|+|.|+|.|.|..|..... +.+.|..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~ 228 (423)
T 3qs7_E 177 DSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228 (423)
T ss_dssp -------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSS
T ss_pred CCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEec
Confidence 21110000000011111111 25679999999999999987653 5565554
No 138
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.66 E-value=2.6e-16 Score=159.56 Aligned_cols=206 Identities=16% Similarity=0.131 Sum_probs=128.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeee---cceEeecCceEEEEEEE------EecCCCeEEEEeCCEEe
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKE---SMVIREAGGNVTMSCYV------YGDPEPTILWLLNGQVL 301 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~---~~~~v~~G~~v~l~C~~------~g~P~p~v~W~~~g~~l 301 (610)
.+.+.|+|.+.+..+... ..+....+.-+|.+...+ ....+.+|+.+.|.|.+ .|.|.|.+.|++++..+
T Consensus 72 ~D~G~Y~C~a~n~~g~~~-~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l 150 (315)
T 1itb_B 72 EDSGHYYCVVRNSSYCLR-IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPL 150 (315)
T ss_dssp GGCSCCEECCCSSSCCCC-EECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEEC
T ss_pred hhCEEEEEEEeCCceEEE-EEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEEC
Confidence 467899999987654322 222222233455554332 24567889999999998 89999999999999988
Q ss_pred ccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee-cCCcce---eEEEEEEcCc--cccccccccCCcc-eee
Q psy10487 302 HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE-NIRGNA---SGEISLDLPE--INLATTLSKTDSW-YML 374 (610)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-N~~G~~---~~~~~L~V~~--~~~~p~~~~~~~~-~~~ 374 (610)
...... .. ...+.|.|.+++.+|+|.|+|.|. |..|.. ...+.+.+.. ...+|.+...+.. ..+
T Consensus 151 ~~~~~~-~~--------~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~ 221 (315)
T 1itb_B 151 LLDNIH-FS--------GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEV 221 (315)
T ss_dssp CCCSSS-EE--------EETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEEC
T ss_pred CCccce-Ee--------ecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEE
Confidence 654321 11 223489999999999999999999 888876 3444443321 1234444443332 122
Q ss_pred hhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCCcccc---------cc--------ccccccceeeeeeeecc-
Q psy10487 375 VLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKMKQS---------VS--------FNDQEKKLLDVSITTTD- 434 (610)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------~~--------~~~~~~~L~i~~v~~~D- 434 (610)
..+..+ .+.|...+.+ ...|.+.+..-.. .. .......|.|.+++.+|
T Consensus 222 ~~g~~v------------~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~ 289 (315)
T 1itb_B 222 DLGSQI------------QLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFY 289 (315)
T ss_dssp CSSSCE------------EEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGG
T ss_pred eCCCcE------------EEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHc
Confidence 222221 2233333322 2233322110000 00 00123479999999999
Q ss_pred CcceeeeecCCCcceeeeeecccc
Q psy10487 435 RHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 435 ~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
+|.|+|.|.|..|..+..+.|.|.
T Consensus 290 ~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 290 KHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp TSCEEEEEECTTCCEEEEEEEECC
T ss_pred CCceEEEEecCCCceeEEEEEEec
Confidence 999999999999999998888764
No 139
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=5.1e-18 Score=172.58 Aligned_cols=177 Identities=17% Similarity=0.164 Sum_probs=118.2
Q ss_pred EEEcCCCCCCcc---------CcccCCCccEEEeecCCCCC--CChhhh----cccCCCCccEEEcccCCCcccchhhh-
Q psy10487 38 SALCKDANFTAL---------PSTLDSDIQVLDLNNNKISY--LTKEAF----KSIGLLNLQRIYLKNSGIREVHRDTF- 101 (610)
Q Consensus 38 ~~~C~~~~l~~l---------P~~l~~~L~~L~L~~n~i~~--l~~~~~----~~~~l~~L~~L~L~~n~l~~i~~~~f- 101 (610)
.+.|...+|+.+ |..++..++.|+|++|.|+. ++...+ ...++.+|++|+|++|.+....+..+
T Consensus 37 ~~~~~~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEEEEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred EEEccCCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 466766666666 87666667777777777754 222221 11146778888888887775545444
Q ss_pred -cCCCCCcEEEccCCCCCCCCcccccCC-----CCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC--HHHh
Q psy10487 102 -KYLTILVEVDLSDNQIAWLHQDTFLGN-----DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH--KDAL 173 (610)
Q Consensus 102 -~~l~~L~~LdLs~n~l~~l~~~~f~~l-----~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~ 173 (610)
..+++|++|+|++|++..+ +..|..+ ++|++|+|++|.++.+.+..|.++++|+.|+|++|++.... +..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 7777788888888877777 4556555 77888888888877777777777778888888877765431 1222
Q ss_pred --hcCcccccccccccccccc---CcccccCCCcccEEecCCCcccc
Q psy10487 174 --IHLTALESLNLNGNRLKHL---SESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 174 --~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
..+++|+.|+|++|+++.+ ....+..+++|+.|++++|.+..
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 6677777788887777733 23444566777777777777654
No 140
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.66 E-value=6.2e-17 Score=176.47 Aligned_cols=201 Identities=10% Similarity=-0.013 Sum_probs=117.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeee--cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKE--SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~--~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~ 308 (610)
.+.+.|+|.+.+. ....+.... ..+|.+...+ ....+.+|+.+.|.|.+.|.|.|.|+|+|+|..+......
T Consensus 300 ~DsG~Y~C~a~N~----~~~~~~L~V-~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~- 373 (527)
T 3qs9_E 300 NDTGYYTCSSSKH----PSQSALVTI-VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG- 373 (527)
T ss_dssp GGCEEEEEEETTE----EEEEEEEEE-C--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB-
T ss_pred ccCeEEEEEEEeC----CCceEEEEE-EccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCccc-
Confidence 4678899999876 111222221 2345554433 3467788999999999999999999999999998655431
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHh
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVS 388 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (610)
.. ....|.|.+++.+|+|.|+|.|.|..|....++.|.|. .+|.+...... ..+.|.+.+
T Consensus 374 -~~--------~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~---~~P~i~~~~~~--------~~l~C~a~g 433 (527)
T 3qs9_E 374 -LD--------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR---RKPQVLAEASA--------SQASCFSDG 433 (527)
T ss_dssp -CS--------SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----CCCEEEECCCC--------E---EEEEC
T ss_pred -cc--------CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe---cCCeEEEeCCC--------CEEEEEEEE
Confidence 11 12379999999999999999999999999999999884 33444333221 112333333
Q ss_pred heeEEEEEEeeecccccccc------cCCcc--ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 389 IGMSFCVCRAHEHKNKRRKR------KGKMK--QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
.+...+.|.+......+... +.... ...........|.+.+ .+|+|.|+|.|.|..|..+..+.|.|..
T Consensus 434 ~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~--~~d~G~Y~C~A~N~~G~~~~~~~L~V~~ 510 (527)
T 3qs9_E 434 YPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE--AIKGFLVKCCAYNSLGTSCETILLNSPG 510 (527)
T ss_dssp SSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCC--SSCSCEEEEEEECSSCEEEEEEEC----
T ss_pred EcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEE--cCCCEEEEEEEEeCCCCceeEEEEecCC
Confidence 33333333222111100000 00000 0000011222344444 4599999999999999999999987654
No 141
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.66 E-value=1.3e-16 Score=159.67 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=108.8
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecC-CCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
++.+...|....+.+|+.++|.|.+.|.| .+.+.|++ +|..+............. ...+.|.|.+++.+|+|.|
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~D~G~Y 77 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIY 77 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEE----TTEEEEEECSCCGGGCEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcC----CCeEEEEEecCCCCCCEEE
Confidence 46788889999999999999999999987 69999999 777766433221111111 1235899999999999999
Q ss_pred EEEeecCCcc-eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCCc--
Q psy10487 338 TCYAENIRGN-ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGKM-- 412 (610)
Q Consensus 338 ~C~a~N~~G~-~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-- 412 (610)
+|.|.|..|. .+..+.|.|.. +|.+...+....+..+..+ .+.|..... +...|.+.+..
T Consensus 78 ~C~~~n~~g~~~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~v------------~l~C~~~~~p~~~v~W~~~~~~~~ 142 (291)
T 1qz1_A 78 KCVVTAEDGTQSEATVNVKIFQ---KLMFKNAPTPQEFKEGEDA------------VIVCDVVSSLPPTIIWKHKGRDVI 142 (291)
T ss_dssp EEEEECTTSCEEEEEEEEEEEC---CSEEEECCSSEEEETTSCE------------EECCEEECSSCCEEEEEETTSCSS
T ss_pred EEEEEcCCCCeeEEEEEEEeec---cccccCCCCcccccCCCeE------------EEEEEeccCCCCEEEEEECCEEcc
Confidence 9999999864 45677777732 3333333333333222221 122222222 22222221111
Q ss_pred --cccccccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 413 --KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 413 --~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
.........++.|.|.+++.+|+|.|+|.|.|..+.
T Consensus 143 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 180 (291)
T 1qz1_A 143 LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180 (291)
T ss_dssp TTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred cCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCC
Confidence 001111234568999999999999999999997644
No 142
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.66 E-value=5.5e-17 Score=169.88 Aligned_cols=212 Identities=17% Similarity=0.132 Sum_probs=124.8
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceee-eecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI-KESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~-~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~ 308 (610)
.+.+.|+|.+.|..+........... ...+.+.. ....+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....+..
T Consensus 73 ~D~G~Y~C~A~N~~G~~~s~~~~l~v-~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~ 151 (384)
T 3kld_A 73 QDAGTYQCIATNSFGTIVSREAKLQF-AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRF 151 (384)
T ss_dssp HHCEEEEEEEEETTEEEECCCEEEEE-EEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEE
T ss_pred ccCEEEEEEEEcCcccEEecceEEEE-ecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEE
Confidence 36789999998766532222221111 11222222 23457788999999999764 67889999999998775443322
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE---EEEEEcCc----ccccccc-ccCCcceeehhhhHH
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG---EISLDLPE----INLATTL-SKTDSWYMLVLGISV 380 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~---~~~L~V~~----~~~~p~~-~~~~~~~~~~~~~~~ 380 (610)
... ..+.|.|.+++.+|+|.|+|.|.|..|.... ...+.+.. ....|.+ ...+....+..+..+
T Consensus 152 ~~~--------~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v 223 (384)
T 3kld_A 152 VSQ--------ETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTV 223 (384)
T ss_dssp ECT--------TTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCE
T ss_pred EEc--------CCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcE
Confidence 211 1247999999999999999999999886532 12222210 0011111 111222222222211
Q ss_pred HHHHHHHhheeEEEEEEeeecccccccccCC--ccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 381 CVVSVIVSIGMSFCVCRAHEHKNKRRKRKGK--MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
. +.|.....+.+...|.+... ..........++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 224 ~----------l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~ 293 (384)
T 3kld_A 224 K----------LECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293 (384)
T ss_dssp E----------EEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred E----------EEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEe
Confidence 1 12332333333334433211 11111222345689999999999999999999999999999998887
Q ss_pred cCC
Q psy10487 459 EQP 461 (610)
Q Consensus 459 ~~p 461 (610)
..|
T Consensus 294 ~~P 296 (384)
T 3kld_A 294 AQP 296 (384)
T ss_dssp EEE
T ss_pred cCC
Confidence 643
No 143
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=151.53 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=114.9
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
..+.|...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.... .+.|.|.+++.+|+|.|+
T Consensus 17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~ 81 (218)
T 3k0w_A 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---------------TSELIFNAVHVKDAGFYV 81 (218)
T ss_dssp --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC---------------SSEEEETTCCGGGCEEEE
T ss_pred CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC---------------CCEEEEccCChhhCeEeE
Confidence 45888889999999999999999999999999999999998875432 138999999999999999
Q ss_pred EEeecCCcce-eEEEEEEcCcccc------------ccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccccc
Q psy10487 339 CYAENIRGNA-SGEISLDLPEINL------------ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKR 405 (610)
Q Consensus 339 C~a~N~~G~~-~~~~~L~V~~~~~------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (610)
|.|.|..|.. +..+.|.|..... .|.+...+....+..+.. +.+.|.....+...
T Consensus 82 C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~------------v~L~C~~~g~p~~~ 149 (218)
T 3k0w_A 82 CRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGST------------LVLQCVAVGSPIPH 149 (218)
T ss_dssp EEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCC------------EEEECEEEBSSCCE
T ss_pred EEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCc------------EEEEEEecccCCCe
Confidence 9999998865 5567777643211 123333333222222221 13344433333221
Q ss_pred ccccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee-eeeecccc
Q psy10487 406 RKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME-LIEQSLAM 458 (610)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v~ 458 (610)
..|.+.+..+. ......|.|.+++.+|+|.|+|.|.|..|... ....+.|.
T Consensus 150 -v~W~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 201 (218)
T 3k0w_A 150 -YQWFKNELPLT-HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 201 (218)
T ss_dssp -EEEEETTEECT-TCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred -EEEEECCEECC-CCCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence 23333222221 23345799999999999999999999988743 33444443
No 144
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.66 E-value=7.9e-17 Score=168.14 Aligned_cols=203 Identities=17% Similarity=0.169 Sum_probs=129.5
Q ss_pred CCCCCCCCCCCCccCCCc----ccccccc-----cccCCCceeee-ecceEeecCceEEEEEEEEecCCCeEEEEeCCEE
Q psy10487 231 LYSHPLSCTEPGMLQTKH----WDDVKAQ-----EFACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQV 300 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~----~~~v~~~-----~~~c~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~ 300 (610)
.+.+.|+|.+.+..+... ...+... ....+|.+... +....+.+|+.++|.|.+.|.|.|.+.|++++..
T Consensus 168 ~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~ 247 (382)
T 1cs6_A 168 SDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS 247 (382)
T ss_dssp GGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSC
T ss_pred ccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcc
Confidence 467889998876552110 0001110 11224555543 4577889999999999999999999999998876
Q ss_pred eccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHH
Q psy10487 301 LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISV 380 (610)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~ 380 (610)
+.... . ...+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.+...+....+..+..+
T Consensus 248 ~~~~~----~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---~p~~~~~~~~~~~~~g~~~ 312 (382)
T 1cs6_A 248 QTSKW----L--------SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA---QPDWLDVITDTEADIGSDL 312 (382)
T ss_dssp CSCCC----S--------BSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE---EEEEEECCCCEEEETTCCE
T ss_pred cccEE----e--------cCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec---CCCcccCCCccEEcCCCeE
Confidence 54311 0 1224899999999999999999999999998888888843 3333333332222222221
Q ss_pred HHHHHHHhheeEEEEEEeeecccccccccCCcc-ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 381 CVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMK-QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
. +.|.....+.+...|.+.+..- ..-.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 313 ~----------l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 313 R----------WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp E----------EECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred E----------EEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 1 1222222222333333322110 001112235689999999999999999999999999998888764
No 145
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.66 E-value=2.9e-16 Score=130.78 Aligned_cols=94 Identities=23% Similarity=0.471 Sum_probs=79.1
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
||.|...+.++.+.+|+.++|.|.+.|.|.|.|.|+|||..+......+......+ ....|.|.+++.+|+|.|+|
T Consensus 5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C 80 (100)
T 3knb_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD----DLTTLIIMDVQKQDGGLYTL 80 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECS----SEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeeccc----ceEEEEEcCCCccCCEEEEE
Confidence 67787788899999999999999999999999999999999876554333222221 23589999999999999999
Q ss_pred EeecCCcceeEEEEEEcC
Q psy10487 340 YAENIRGNASGEISLDLP 357 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~ 357 (610)
.|.|.+|.++.++.|.|.
T Consensus 81 ~a~N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 81 SLGNEFGSDSATVNIHIR 98 (100)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEECCCEEEEEEEEEEE
Confidence 999999999999999884
No 146
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.66 E-value=9.2e-16 Score=150.83 Aligned_cols=167 Identities=18% Similarity=0.163 Sum_probs=114.8
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
+|.+...+....+.+|+.++|.|.+.|.|.+ .+.|+++|..+.... +.|.|.+++.+|+|.|+
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~----------------~~l~i~~~~~~d~G~Y~ 64 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------------PSYRITSASVNDSGEYR 64 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS----------------SEEEESSCCGGGCEEEE
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC----------------CeEEEecCCcccCeEEE
Confidence 4778888888899999999999999999988 999999998876432 37999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccc
Q psy10487 339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF 418 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (610)
|.|.|..+.... .|.|... +............+. . +.+.|............|.+.+..+..
T Consensus 65 C~~~~~~~s~~~--~l~v~~~---~~~~~~~~~~~~~g~-~------------v~l~C~~~~~~p~~~v~W~~~g~~~~~ 126 (262)
T 3rjd_A 65 CQRGLSGRSDPI--QLEIHRG---WLLLQVSSRVFTEGE-P------------LALRCHAWKDKLVYNVLYYRNGKAFKF 126 (262)
T ss_dssp EEESSSCCCCCE--EEEEECS---SEEEEESCSEEETTS-C------------EEEEEEEGGGCCCEEEEEEETTEEEEE
T ss_pred EEEecCCccccE--EEEEecc---ceEecCCCeEEecCC-e------------EEEEEEccCCCCCceEEEEECCccccc
Confidence 999998776544 4444221 111111111111111 1 133444321111111233333343444
Q ss_pred cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487 419 NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ 460 (610)
Q Consensus 419 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~ 460 (610)
......|.|.+++.+|+|.|+|.|.|..|..+....+.|.+.
T Consensus 127 ~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~ 168 (262)
T 3rjd_A 127 FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL 168 (262)
T ss_dssp EEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS
T ss_pred cCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC
Confidence 445678999999999999999999999988888778777653
No 147
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.65 E-value=1.4e-16 Score=159.63 Aligned_cols=204 Identities=13% Similarity=0.136 Sum_probs=128.1
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCC-CeEEEE-eCCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPE-PTILWL-LNGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~-p~v~W~-~~g~~l~~~~~~~ 308 (610)
.+.+.|+|.+.+ +. ...+... +..+|.+...+....+.+|+.+.|.|.+.| |. |.+.|+ ++|..+....+
T Consensus 67 ~d~G~Y~C~~~n---g~-~~~~~l~-V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~-- 138 (290)
T 2o26_X 67 TRTGTYTCSNSN---GL-TSSIYVF-VRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLT-- 138 (290)
T ss_dssp GGCEEEEEEESS---SC-EEEEEEE-EECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCE--
T ss_pred HhCeEEEEEeeC---Cc-cEEEEEE-EeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCc--
Confidence 467889999887 22 1122221 123454445667788889999999999996 88 999995 67877654321
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCe-EEEEEeecCCcce-eEEEEEEcCc-cccccccccCCcceeehhhhHHHHHHH
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAG-EYTCYAENIRGNA-SGEISLDLPE-INLATTLSKTDSWYMLVLGISVCVVSV 385 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~N~~G~~-~~~~~L~V~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~ 385 (610)
... ...+.|.|.+++.+|+| .|+|.|.|..|.. +..+.|.|.. ...+|.+...+....+..+..
T Consensus 139 ~~~-------~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~------ 205 (290)
T 2o26_X 139 FVP-------NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDT------ 205 (290)
T ss_dssp EEE-------ETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCC------
T ss_pred eee-------CCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCc------
Confidence 111 11237999999999999 9999999997664 3467777742 223445544433333322222
Q ss_pred HHhheeEEEEEEeeeccc---ccccccCCcc-------cc--cc---ccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487 386 IVSIGMSFCVCRAHEHKN---KRRKRKGKMK-------QS--VS---FNDQEKKLLDVSITTTDRHTGSCEALGSQPDME 450 (610)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~--~~---~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 450 (610)
+.+.|...+.+. ..|.+.+... .. .. .......|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 206 ------v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~ 279 (290)
T 2o26_X 206 ------FTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSAN 279 (290)
T ss_dssp ------EEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEE
T ss_pred ------EEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEE
Confidence 133344333332 2333322210 00 00 123456899999999999999999999999999
Q ss_pred eeeecccccCC
Q psy10487 451 LIEQSLAMEQP 461 (610)
Q Consensus 451 ~~~~l~v~~~p 461 (610)
..+.|.|.++|
T Consensus 280 ~~~~l~V~~~P 290 (290)
T 2o26_X 280 VTTTLKVVEKG 290 (290)
T ss_dssp EEEEECC----
T ss_pred EEEEEEEEeCC
Confidence 99999887653
No 148
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.65 E-value=5.1e-17 Score=154.00 Aligned_cols=191 Identities=17% Similarity=0.113 Sum_probs=110.3
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc--ceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD--LLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
++.+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+...... ..............+.|.|.+++.+|+|.|
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y 83 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY 83 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEE
Confidence 456666778889999999999999999999999999977553211000 000000111112236899999999999999
Q ss_pred EEEeecCCcc--eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHH-HhheeEEEEEEeeeccccccccc--CCc
Q psy10487 338 TCYAENIRGN--ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI-VSIGMSFCVCRAHEHKNKRRKRK--GKM 412 (610)
Q Consensus 338 ~C~a~N~~G~--~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~ 412 (610)
+|.|.|..|. .+..+.|.|...+..+.. .....+..+..+.+.|.+ .+.+...+.|.+.+......... ...
T Consensus 84 ~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~ 160 (209)
T 1nbq_A 84 TCMVSEEGGNSYGEVKVKLIVLVPPSKPTV---NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS 160 (209)
T ss_dssp EEEEEETTSSCEECCEEECCEEBCCCCCCC---CCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCT
T ss_pred EEEEecCCCCccceEEEEEEEecCCcCCCc---ccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeee
Confidence 9999999763 345566666333222222 111112222222222222 22222233333322211100000 000
Q ss_pred cccccccccccceeeeeeeeccCcceeeeecCCCcceeeee
Q psy10487 413 KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIE 453 (610)
Q Consensus 413 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 453 (610)
............|.|.+++.+|+|.|+|.|.|..|..+.+.
T Consensus 161 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~ 201 (209)
T 1nbq_A 161 NSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN 201 (209)
T ss_dssp TCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred ccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccc
Confidence 01112223567899999999999999999999999874433
No 149
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.65 E-value=3e-17 Score=169.21 Aligned_cols=208 Identities=12% Similarity=0.148 Sum_probs=105.5
Q ss_pred CCCCCCCCCCCCccCCCccccccccccc---CCCceeeeecceEeecCceEEEEEEE-----EecCCCeEEEEeCCEEec
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA---CPPNVTIKESMVIREAGGNVTMSCYV-----YGDPEPTILWLLNGQVLH 302 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~---c~P~i~~~~~~~~v~~G~~v~l~C~~-----~g~P~p~v~W~~~g~~l~ 302 (610)
.+.+.|+|.+.+..+... ..+...... +.+.....+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+.
T Consensus 89 ~D~G~Y~C~a~n~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~ 167 (349)
T 4dep_C 89 NDTGNYTCMLRNTTYCSK-VAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ 167 (349)
T ss_dssp GGCEEEEEEEECSSCEEE-EEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC
T ss_pred hhCEEEEEEEecCCceEE-EEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC
Confidence 467889998876543221 111121111 11112223456678899999999985 789999999999999885
Q ss_pred cCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC-cce---eEEEEEEcCcccc---ccccccCCcce--e
Q psy10487 303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR-GNA---SGEISLDLPEINL---ATTLSKTDSWY--M 373 (610)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~-G~~---~~~~~L~V~~~~~---~p~~~~~~~~~--~ 373 (610)
.... .. .....|.|.+++.+|+|.|+|.|.|.. |.. +..+.|.|..... +|.+....... .
T Consensus 168 ~~~~--~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~ 237 (349)
T 4dep_C 168 NFNN--VI--------PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYE 237 (349)
T ss_dssp SCSS--EE--------EETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC---------
T ss_pred Cccc--ee--------ecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEE
Confidence 4321 11 122379999999999999999999987 554 5667777643221 33333322211 1
Q ss_pred ehhhhHHHHHHHHHhheeEEEEEEe----eecccccccccCCccc----cccc-----------cccccceeeeeeeecc
Q psy10487 374 LVLGISVCVVSVIVSIGMSFCVCRA----HEHKNKRRKRKGKMKQ----SVSF-----------NDQEKKLLDVSITTTD 434 (610)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~-----------~~~~~~L~i~~v~~~D 434 (610)
+..+..+.+ .|.... .+.+...|.+.+..-. .... ......|.|.+++.+|
T Consensus 238 v~~G~~v~l----------~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d 307 (349)
T 4dep_C 238 KEPGEELLI----------PCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSED 307 (349)
T ss_dssp -------CC----------CEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC---------
T ss_pred EecCCcEEE----------EEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHH
Confidence 222221221 222211 1112222322211100 0000 1123459999999999
Q ss_pred C-cceeeeecCCCcceeeeeeccccc
Q psy10487 435 R-HTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 435 ~-G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
+ |.|+|.|.|..|..+..+.|.|..
T Consensus 308 ~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 308 LKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp ----CEEEEECSSCEEEEECC-----
T ss_pred cCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 9 999999999999999999988865
No 150
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=160.17 Aligned_cols=210 Identities=11% Similarity=0.056 Sum_probs=125.8
Q ss_pred CCCCCCCCCCCCccCCCcccccccccc---c------CCCceeeee-cceEeecCceEEEEEEEE-ecCCCeEEEEeCCE
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEF---A------CPPNVTIKE-SMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQ 299 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~---~------c~P~i~~~~-~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~ 299 (610)
.+.+.|+|.+.+..+......+..... . .+|.+...+ ....+.+|+.+.|.|.+. |.|.|.+.|++++.
T Consensus 68 ~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~ 147 (312)
T 2y23_A 68 DDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEK 147 (312)
T ss_dssp GGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTE
T ss_pred cCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCE
Confidence 367889999887665332222221110 0 155555544 378889999999999999 89999999999999
Q ss_pred EeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc---------c-------cccc
Q psy10487 300 VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE---------I-------NLAT 363 (610)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~---------~-------~~~p 363 (610)
.+....+......... ....|.|.+++.+|+|.|+|.|.|..+.....+.+.... . ..+|
T Consensus 148 ~i~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 223 (312)
T 2y23_A 148 EIFEGPKYKMHIDRNT----GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 223 (312)
T ss_dssp EECSSSSCEEEEETTT----TEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ECeeCCcEEEEEccCC----CEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCC
Confidence 9877654332222111 123699999999999999999987655544444432100 0 0112
Q ss_pred ccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc---cccccccCCc---cccccccccccceeeeeeeeccCcc
Q psy10487 364 TLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK---NKRRKRKGKM---KQSVSFNDQEKKLLDVSITTTDRHT 437 (610)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~D~G~ 437 (610)
.+..... ..+..+.. +.+.|.....+ ...|.+.+.. ............|.|.+++.+|+|.
T Consensus 224 ~~~~~~~-~~v~~G~~------------~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~ 290 (312)
T 2y23_A 224 HFVEYLS-WEVTGECN------------VLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGI 290 (312)
T ss_dssp EEEEEEE-EEEETTTE------------EEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEE
T ss_pred ceeecce-EEEeCCCE------------EEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEE
Confidence 1111111 11111111 13344444332 2233322111 1111222334689999999999999
Q ss_pred eeeeecCCCcceeeeeeccc
Q psy10487 438 GSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 438 Y~C~A~N~~G~~~~~~~l~v 457 (610)
|+|.|.|..|..+..+.|.+
T Consensus 291 Y~C~a~N~~G~~~~~~~l~i 310 (312)
T 2y23_A 291 YEVILKDDRGKDKSRLKLVD 310 (312)
T ss_dssp EEEEEESTTCCEEEEEEECS
T ss_pred EEEEEEcCCCceeeeeEEEe
Confidence 99999999999999888865
No 151
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.65 E-value=2.7e-16 Score=144.25 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=102.0
Q ss_pred CceeeeecceEeecCceEEEEEEEEecC-CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
|.+...+....+.+|+.++|.|.+.+.| .+.+.|+++|..+..... .+.|.+++.+|+|.|+|
T Consensus 5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~----------------~~~~~~~~~~d~G~Y~C 68 (170)
T 3ry4_A 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ----------------PSYRFKANNNDSGEYTC 68 (170)
T ss_dssp CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS----------------SEEEEECCGGGCEEEEE
T ss_pred CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc----------------ceEEEecccccCeEEEE
Confidence 5666777778899999999999999987 679999999998765432 57788999999999999
Q ss_pred EeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccccc
Q psy10487 340 YAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFN 419 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (610)
.|.|..+.. .+.|.|... +.....+......+ .. +.+.|............|.+.+..+...
T Consensus 69 ~~~~~~~s~--~~~l~v~~~---~~~~~~~~~~~~~g-~~------------~~l~C~~~~~~p~~~~~W~~~g~~~~~~ 130 (170)
T 3ry4_A 69 QTGQTSLSD--PVHLTVLFE---WLVLQTPHLEFQEG-ET------------IMLRCHSWKDKPLVKVTFFQNGKSQKFS 130 (170)
T ss_dssp EETTSBCCC--CEEEEEECC---SEEEECSCSEECTT-CC------------EEEEEEEGGGCCEEEEEEEETTEEEEEE
T ss_pred EEeCCCceE--eEEEEEECC---ceEecCCCceeecC-Ce------------EEEEEECCCCCCCceEEEEECCeEcccc
Confidence 999865544 455555321 12222222111111 11 1334443222111112333333333334
Q ss_pred ccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 420 DQEKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
..+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 131 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 159 (170)
T 3ry4_A 131 HLDPTFSIPQANHSHSGDYHCTGNIGYTL 159 (170)
T ss_dssp SSCCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCCCeEEEEeccccCCEEEEEEEEeCcCc
Confidence 45668999999999999999999999986
No 152
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.65 E-value=2.4e-17 Score=189.80 Aligned_cols=201 Identities=19% Similarity=0.216 Sum_probs=138.3
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|+|.+.+..+.... .+.. .+..+|.+...+....+.+|++++|.|.+.|.|.|.+.|+++|..+....
T Consensus 316 ~D~G~Y~C~a~n~~g~~~~-~~~l-~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~----- 388 (816)
T 3dmk_A 316 EDSGKYLCVVNNSVGGESV-ETVL-TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----- 388 (816)
T ss_dssp GGCEEEEEEEECSSCEEEE-EEEE-EECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS-----
T ss_pred hHCEEEEEEEEcCCCceEE-EEEE-EEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC-----
Confidence 3567899998776654321 1111 12245666677778889999999999999999999999999998875432
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG 390 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (610)
+.|.|.+++.+|+|.|+|.|.|..|....++.+.|.....+|.+...+....+..+...
T Consensus 389 -----------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v---------- 447 (816)
T 3dmk_A 389 -----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSV---------- 447 (816)
T ss_dssp -----------SEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCE----------
T ss_pred -----------CEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCE----------
Confidence 37999999999999999999999999888888888655555555544433333222221
Q ss_pred eEEEEEEeeec--ccccccccCCcc---ccccc-------cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 391 MSFCVCRAHEH--KNKRRKRKGKMK---QSVSF-------NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 391 ~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
.+.|...+. +...|.+.+..- ..... .+....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 448 --~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 525 (816)
T 3dmk_A 448 --FLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525 (816)
T ss_dssp --EEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred --EEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEe
Confidence 223333322 223333221110 00000 0112359999999999999999999999999999999887
Q ss_pred cCC
Q psy10487 459 EQP 461 (610)
Q Consensus 459 ~~p 461 (610)
..|
T Consensus 526 ~~p 528 (816)
T 3dmk_A 526 GLP 528 (816)
T ss_dssp SSC
T ss_pred cCC
Confidence 654
No 153
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.65 E-value=4.3e-16 Score=131.46 Aligned_cols=95 Identities=26% Similarity=0.421 Sum_probs=81.4
Q ss_pred cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
..||.|...+.++.+.+|++++|.|.+.|.|.|.|.|+|||..+....+.....+.. ...|.|.+++.+|+|.|
T Consensus 11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y 84 (107)
T 3knb_B 11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGA------EHGLLLTAALPTDAGVY 84 (107)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETT------EEEEEESSCCGGGCEEE
T ss_pred CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCc------eEEEEEecCChhhCEEE
Confidence 357889888999999999999999999999999999999999998765433332222 24899999999999999
Q ss_pred EEEeecCCcceeEEEEEEcCc
Q psy10487 338 TCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~ 358 (610)
+|+|.|.+|.++.++.|.|.+
T Consensus 85 ~C~a~N~~G~~~~~~~l~V~~ 105 (107)
T 3knb_B 85 VCRARNAAGEAYAAAAVTVLE 105 (107)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCEEEEEEEEEEEc
Confidence 999999999999999998843
No 154
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.65 E-value=2.9e-16 Score=175.77 Aligned_cols=232 Identities=15% Similarity=0.161 Sum_probs=140.1
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|+|.+.+..+......+......-++.+...+....+.+|+.++|.|.+.|+|.|.+.|+++|..+...
T Consensus 174 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~------ 247 (642)
T 1e07_A 174 NDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST------ 247 (642)
T ss_pred ccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcccC------
Confidence 46688999998766543323333333333444455667778899999999999999999999999999877432
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE--EEEEEcCccccccccccCCcceeehhhhHHHHHHHHHh
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG--EISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVS 388 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~--~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (610)
+.|.|.+++.+|+|.|+|.|.|..|.... .+.|.|......|.+..... ..+..+..+.+.|.+.+
T Consensus 248 -----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~-~~~~~g~~v~l~C~~~~ 315 (642)
T 1e07_A 248 -----------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNS-NPVEDEDAVALTCEPEI 315 (642)
T ss_pred -----------CceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCc-eeEecCCcEEEEEECCC
Confidence 27999999999999999999999987644 45666644333333332221 11221111111111111
Q ss_pred heeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee-eeeecccccCCCcceeE
Q psy10487 389 IGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME-LIEQSLAMEQPPVHITI 467 (610)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v~~~pp~~i~i 467 (610)
.+ ..+.|++.+..- .....+.....++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|...|+. ..+
T Consensus 316 ~p-~~v~W~~~g~~l-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~-~~~ 386 (642)
T 1e07_A 316 QN-TTYLWWVNNQSL-------PVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDD-PTI 386 (642)
T ss_pred CC-ccEEEEECCccC-------CCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCC-Cee
Confidence 11 112222211110 0111122223457899999999999999999999999754 3466666654432 111
Q ss_pred e-----cCCCC----Cc-ccccCCCc-ccccCC
Q psy10487 468 E-----SHAVD----PQ-VSVFPPPP-EFSSNH 489 (610)
Q Consensus 468 e-----~~~~~----~l-~~~~P~pp-ef~~~~ 489 (610)
. ...++ .| +.++|+|. .|..+-
T Consensus 387 ~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g 419 (642)
T 1e07_A 387 SPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDG 419 (642)
T ss_pred cCCceEecCCCcEEEEEEcCccCCCeEEEEECC
Confidence 1 11122 22 66788776 776553
No 155
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=156.74 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=127.3
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+..... .+..... .+.+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....
T Consensus 58 ~d~G~Y~C~~~~~~~s~---~~~l~v~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~---- 128 (262)
T 3rjd_A 58 NDSGEYRCQRGLSGRSD---PIQLEIH--RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH---- 128 (262)
T ss_dssp GGCEEEEEEESSSCCCC---CEEEEEE--CSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE----
T ss_pred ccCeEEEEEEecCCccc---cEEEEEe--ccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC----
Confidence 46778999886543322 1222111 2335556667778899999999999 788999999999998875321
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI 389 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (610)
..+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+...+|.+...+......+. .
T Consensus 129 ----------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~-~---------- 187 (262)
T 3rjd_A 129 ----------WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGN-L---------- 187 (262)
T ss_dssp ----------ECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTC-C----------
T ss_pred ----------CCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCC-e----------
Confidence 2348999999999999999999999998888888888655445555444422222221 1
Q ss_pred eeEEEEEEeeeccc---ccc-cccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487 390 GMSFCVCRAHEHKN---KRR-KRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME 450 (610)
Q Consensus 390 ~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 450 (610)
+.+.|.....+. ..| ..|.+.+..+........|.|.+++.+|+|.|+|.|.|..|...
T Consensus 188 --~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~ 250 (262)
T 3rjd_A 188 --VTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVL 250 (262)
T ss_dssp --EEEEEECCCCCC-----EEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEEETTSSCE
T ss_pred --EEEEeEcccCCCCCCccEEEEEEeCCcEecccCCCceEEEEEechhhCeEEEEEEEcccCceE
Confidence 233454443322 111 23333333333334556899999999999999999999999753
No 156
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=148.79 Aligned_cols=167 Identities=17% Similarity=0.151 Sum_probs=101.9
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+. ..+.+|++++|.|.+.|.|. .+.|+|++..+......... ....+.|.|.+++.+|+|.|+|
T Consensus 5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C 75 (196)
T 2d3v_A 5 KATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLE-------PKNKARFSIPSMTEHHAGRYRC 75 (196)
T ss_dssp BCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCS-------STTEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccC-------CccccEEEeccCChhHCeEEEE
Confidence 577777776 47889999999999998876 99999999866432110000 0124589999999999999999
Q ss_pred EeecCCcce--eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc-cccccccCCcccc-
Q psy10487 340 YAENIRGNA--SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK-NKRRKRKGKMKQS- 415 (610)
Q Consensus 340 ~a~N~~G~~--~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 415 (610)
.|.|..|.. +..+.|.|.....+|.+...+.. .+..+.. +.+.|.....+ ...|.+.+.....
T Consensus 76 ~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~-~v~~G~~------------v~L~C~~~~~p~~~~W~k~g~~~~~~ 142 (196)
T 2d3v_A 76 YYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP-VVTSGEN------------VTLQCGSRLRFDRFILTEEGDHKLSW 142 (196)
T ss_dssp EEEETTEECBCCCCEEEEEECSSCCCEEEC------------------------CEEEEEESSCCSEEEEEEC---CCEE
T ss_pred EEeCCCCcCCcCccEEEEecCCCCCCeEEccCCc-cccCCCc------------EEEEEEcCCCCCEEEEEccCCccccc
Confidence 999998753 45677777543334444333221 1111111 12334333332 1122222111100
Q ss_pred -----c-cccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 416 -----V-SFNDQEKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 416 -----~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
. ......+.|.|.+++.+|+|.|+|.|.|..+.
T Consensus 143 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 181 (196)
T 2d3v_A 143 TLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181 (196)
T ss_dssp EEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred ccccccccCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence 0 00123468999999999999999999997664
No 157
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.64 E-value=2.3e-16 Score=146.13 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=105.3
Q ss_pred cceEeecCceEEEEEEEEe--cCCCeEEEEeCCEEeccCCccc-eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487 268 SMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDL-LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI 344 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 344 (610)
..+.+.+|++++|.|...+ .|.|.|.|+|++..+....... .....++..+...+.|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~ 83 (176)
T 1hng_A 4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST 83 (176)
T ss_dssp EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeC
Confidence 3467789999999995433 6778999999997664221110 111112212223457999999999999999999999
Q ss_pred Ccce--eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccc
Q psy10487 345 RGNA--SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQE 422 (610)
Q Consensus 345 ~G~~--~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (610)
.|.. +..+.|.|.+....|.+...... +.+.|...+.+.+ ...|.+.+..+. ..
T Consensus 84 ~g~~~~~~~~~l~V~~~~~~p~i~~~~~~--------------------v~L~C~~~g~p~p-~i~W~~~g~~l~---~~ 139 (176)
T 1hng_A 84 NGTRILNKALDLRILEMVSKPMIYWECSN--------------------ATLTCEVLEGTDV-ELKLYQGKEHLR---SL 139 (176)
T ss_dssp TCCEEEEEEEEEEEECCCCCCEEEEETTT--------------------TEEEEECSSCSSC-EEEEEETTEEEE---EE
T ss_pred CCCEEEEEEEEEEEeCCCCCCEEEecCCc--------------------EEEEEEecCCCCc-EEEEEECCEECC---CC
Confidence 9986 67788888543333333211110 1334443333321 123333332221 12
Q ss_pred cceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 423 KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 423 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
..+.+.+++.+|+|.|+|.|.|..|..+..+.+.+
T Consensus 140 ~~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 140 RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp SSSEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred CcEEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 23667788899999999999999999888777654
No 158
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.64 E-value=2.2e-17 Score=169.56 Aligned_cols=219 Identities=12% Similarity=0.111 Sum_probs=130.8
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCcee--eeecceEeecCceEEEEEE-----EEecCCCeEEEEeCCEEecc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVT--IKESMVIREAGGNVTMSCY-----VYGDPEPTILWLLNGQVLHN 303 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~--~~~~~~~v~~G~~v~l~C~-----~~g~P~p~v~W~~~g~~l~~ 303 (610)
.+.+.|+|.+.+..+. ....+..... .+|... .......+.+|+.+.|.|. +.|.|.|.+.|+++|..+..
T Consensus 91 ~D~G~Y~C~~~n~~g~-~~~~~~l~V~-~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~ 168 (339)
T 3o4o_C 91 EDSGTYVCTTRNASYC-DKMSIELRVF-ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK 168 (339)
T ss_dssp TCCEEEECCEEETTEE-EEEEEEEEEE-CSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCT
T ss_pred ccCEEEEEEEECCcce-EEEEEEEEEE-cCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCC
Confidence 4678899998765431 1122222211 122111 1123347789999999999 89999999999999988865
Q ss_pred CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc----ceeEEEEEEcCccc--cccccccCCcceeehhh
Q psy10487 304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG----NASGEISLDLPEIN--LATTLSKTDSWYMLVLG 377 (610)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G----~~~~~~~L~V~~~~--~~p~~~~~~~~~~~~~~ 377 (610)
.......... .+.|.|.+++.+|+|.|+|.|.|..| .....+.|.|.... .+|.+...+....+..+
T Consensus 169 ~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G 241 (339)
T 3o4o_C 169 DNEKFLSVRG-------TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLG 241 (339)
T ss_dssp TCSSEEECTT-------SSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCC
T ss_pred CCceeEEcCC-------cceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccC
Confidence 5332222111 13899999999999999999999988 45667778775332 23444444444333333
Q ss_pred hHHHHHHHH---HhheeEEEEEEeeeccccccc-c--cCCccccccccccc-----cceeeeeeeeccC-cceeeeecCC
Q psy10487 378 ISVCVVSVI---VSIGMSFCVCRAHEHKNKRRK-R--KGKMKQSVSFNDQE-----KKLLDVSITTTDR-HTGSCEALGS 445 (610)
Q Consensus 378 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~-----~~L~i~~v~~~D~-G~Y~C~A~N~ 445 (610)
..+.+.|.+ .+.+....++|.+........ . .............+ ..|.|.+++.+|+ |.|+|.|.|.
T Consensus 242 ~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~ 321 (339)
T 3o4o_C 242 SRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNT 321 (339)
T ss_dssp SCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEET
T ss_pred CCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEec
Confidence 334444444 333312233343322211100 0 00011111111111 1799999999998 9999999999
Q ss_pred Ccceeeeeecccc
Q psy10487 446 QPDMELIEQSLAM 458 (610)
Q Consensus 446 ~G~~~~~~~l~v~ 458 (610)
.|+++..+.+.+.
T Consensus 322 ~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 322 LSFQTLRTTVKEH 334 (339)
T ss_dssp TEEECCBCCCCC-
T ss_pred cCceEEEEEhhHh
Confidence 9999888777554
No 159
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=9.1e-16 Score=169.23 Aligned_cols=167 Identities=25% Similarity=0.370 Sum_probs=145.3
Q ss_pred CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487 36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~ 114 (610)
-+.+++.++.+..+|. ....+|+.|+|++|.|+.+++ |. .+++|+.|+|++|.|..++ .|..+++|++|+|++
T Consensus 45 L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LT--NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH 118 (605)
T ss_dssp CCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred CCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hc--cCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence 3567888888888873 224689999999999999886 55 6899999999999999875 589999999999999
Q ss_pred CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194 (610)
Q Consensus 115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 194 (610)
|+|..++ .|..+++|+.|+|++|.++.+ ..|..+++|+.|+|++|+|..+.+ +..+++|+.|+|++|.|..++
T Consensus 119 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~- 191 (605)
T 1m9s_A 119 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR- 191 (605)
T ss_dssp SCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-
T ss_pred CCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-
Confidence 9999874 488999999999999999988 458899999999999999998866 889999999999999999884
Q ss_pred ccccCCCcccEEecCCCccccc
Q psy10487 195 SVFFPTPNLKTLSLDGNPWCCD 216 (610)
Q Consensus 195 ~~~~~~~~L~~l~l~~N~~~c~ 216 (610)
.+..+++|+.|+|++|++...
T Consensus 192 -~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GGTTCTTCSEEECCSEEEECC
T ss_pred -HHccCCCCCEEEccCCcCcCC
Confidence 478899999999999987654
No 160
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.64 E-value=3.8e-16 Score=145.62 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=102.3
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
-+|.+...+.. .+.+|++++|.|.+.| |.+.+.|+|+|.... ...+.|.|.+++.+|+|.|+
T Consensus 7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~----------------~~~~~L~i~~v~~~D~G~Y~ 68 (184)
T 2gi7_A 7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY----------------QDQAVLFIPAMKRSLAGRYR 68 (184)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCE----------------ESSSEEEESSCCGGGCEEEE
T ss_pred CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcccc----------------CcccEEEECcCChhhCceEE
Confidence 35777777764 7899999999999988 889999999986510 12248999999999999999
Q ss_pred EEeecCCcc--eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccc-ccccccCCccc-
Q psy10487 339 CYAENIRGN--ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKN-KRRKRKGKMKQ- 414 (610)
Q Consensus 339 C~a~N~~G~--~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 414 (610)
|.|.|..|. .+..+.|.|.+...+|.+...+...... +..+ .+.|.....+. ..|.+.+....
T Consensus 69 C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~-G~~v------------~l~C~~~~~~~~~~w~k~g~~~~~ 135 (184)
T 2gi7_A 69 CSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSS-GGDV------------TLQCQTRYGFDQFALYKEGDPAPY 135 (184)
T ss_dssp EEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCC-TTCE------------EEEEECSSCCCEEEEEECCCCTTS
T ss_pred EEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecC-CCcE------------EEEEEcCCCCcEEEEEECCCcCcc
Confidence 999999874 3456777775444444444333221111 1111 22333221111 11111111000
Q ss_pred cccccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 415 SVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 415 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
.......++.|.|.+++.+|+|.|+|.|.|..+.
T Consensus 136 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~ 169 (184)
T 2gi7_A 136 KNPERWYRASFPIITVTAAHSGTYRCYSFSSRDP 169 (184)
T ss_dssp CCCCEEEEESSSEEEETTCCSEEEEEEEECTTST
T ss_pred eecCCCceEEEEEccCCccCCeEEEEEEEeCCCC
Confidence 1112245668999999999999999999997653
No 161
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=5.3e-16 Score=177.22 Aligned_cols=163 Identities=17% Similarity=0.097 Sum_probs=105.4
Q ss_pred CccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEE
Q psy10487 56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY 135 (610)
Q Consensus 56 ~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~ 135 (610)
+|++|+|++|.++...+..|. ++++|++|+|++|.+....+..|..+++|++|+|++|++....+..|..+++|+.|+
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CccEEECCCCccccccCHHHh--cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 455555555555544444444 466666666666666666666666666666666666666665566666666777777
Q ss_pred eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487 136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
|++|.+++..+..|.++++|+.|+|++|++....+..|..+++|+.|+|++|++.+..+..+..+++|+.|++++|++.+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 77776666555566666777777777777765556666666777777777777665555566666677777777777666
Q ss_pred cCCch
Q psy10487 216 DCHLR 220 (610)
Q Consensus 216 ~c~l~ 220 (610)
.+...
T Consensus 553 ~ip~~ 557 (768)
T 3rgz_A 553 TIPAA 557 (768)
T ss_dssp BCCGG
T ss_pred cCChH
Confidence 65543
No 162
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=6.6e-16 Score=148.54 Aligned_cols=129 Identities=31% Similarity=0.381 Sum_probs=80.5
Q ss_pred cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy10487 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN 137 (610)
Q Consensus 58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls 137 (610)
+.++++++.++.++.... .+|+.|+|++|.|..+.+.+|..+++|++|+|++|+|..+.+..|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC-----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 356777777777764332 356666666666666666666666666666666666666655556655556555555
Q ss_pred CccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487 138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 138 ~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
+|.++.++...|..++ +|+.|+|++|+|+.+.+..|..+++|+.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 89 GNKITELPKSLFEGLF------------------------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp SSCCCCCCTTTTTTCT------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCCccCHhHccCCC------------------------CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 5555555544444444 45555555555555555566677788888888888753
No 163
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.8e-16 Score=145.67 Aligned_cols=142 Identities=22% Similarity=0.276 Sum_probs=121.1
Q ss_pred ccCcccCCCccEEEeecCCCC--CCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccc
Q psy10487 48 ALPSTLDSDIQVLDLNNNKIS--YLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTF 125 (610)
Q Consensus 48 ~lP~~l~~~L~~L~L~~n~i~--~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f 125 (610)
.++...+.+++.|+|++|.|+ .++.. +. .+++|+.|+|++|.|..+ ..|..+++|++|+|++|++....+..+
T Consensus 17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~-~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 17 ELRNRTPAAVRELVLDNCKSNDGKIEGL-TA--EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp HHTTSCTTSCSEEECCSCBCBTTBCSSC-CG--GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred hhccCCcccCCEEECCCCCCChhhHHHH-HH--hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 344455678999999999998 66543 54 688999999999999988 678999999999999999998667778
Q ss_pred cCCCCCcEEEeeCccccccCc-CcCCCCCCccEEEccCccccccCH---HHhhcCccccccccccccccccCc
Q psy10487 126 LGNDRLKVLYLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHK---DALIHLTALESLNLNGNRLKHLSE 194 (610)
Q Consensus 126 ~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~ 194 (610)
..+++|++|+|++|.++.+.. ..|..+++|+.|+|++|.+..+.+ ..+..+++|+.|++++|.+..++.
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 889999999999999998754 578889999999999999998876 578889999999999998877764
No 164
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.63 E-value=4.4e-16 Score=159.01 Aligned_cols=210 Identities=11% Similarity=0.090 Sum_probs=129.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceee--eecceEeecC---ceEEEEEE-EEecCCCeEEEEeCCEEeccC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI--KESMVIREAG---GNVTMSCY-VYGDPEPTILWLLNGQVLHNS 304 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~--~~~~~~v~~G---~~v~l~C~-~~g~P~p~v~W~~~g~~l~~~ 304 (610)
.+.+.|.|.+.....+.....+.... ..+|.+.. .+....+.+| +.++|.|. +.|.|.|.+.|++++......
T Consensus 102 ~D~G~Y~C~~~~~~~~~~~~~~~l~V-~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~ 180 (331)
T 3u83_A 102 EDEGVYICEFATFPTGNRESQLNLTV-MAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY 180 (331)
T ss_dssp GGCEEEEEEEEEETTEEEEEEEEEEE-EBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEE
T ss_pred ccCcEEEEEEEecCCCccEEEEEEEE-ecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcccc
Confidence 46788999743332232222222222 23555533 3466777888 77999998 889999999999953221111
Q ss_pred CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccc-cCCcceeehhhhHHHHH
Q psy10487 305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLS-KTDSWYMLVLGISVCVV 383 (610)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~-~~~~~~~~~~~~~~~~~ 383 (610)
. .....++.....+.|.|..++.+|+|.|+|.|.|..|..+.++.|.|... |.+. .......+..+..
T Consensus 181 ~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~---P~~~~~~~~~~~~~~g~~---- 249 (331)
T 3u83_A 181 Q----EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE---PEVTIEGFDGNWYLQRMD---- 249 (331)
T ss_dssp E----EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEE---EEEEEECCCSCCBTTCCC----
T ss_pred c----eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecC---CeEEEecCCCceEeCCCe----
Confidence 0 11111223344568999999999999999999999999888888887432 2222 1111111111111
Q ss_pred HHHHhheeEEEEEEeeecccccccccCCcccccc--ccccccceeee-eeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487 384 SVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVS--FNDQEKKLLDV-SITTTDRHTGSCEALGSQPDMELIEQSLAMEQ 460 (610)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~-~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~ 460 (610)
+.+.|.....+......|.+.+..+. ....++.|.|. +++.+|+|.|+|.|.|..|..+..+.|.|.+.
T Consensus 250 --------~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 321 (331)
T 3u83_A 250 --------VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEA 321 (331)
T ss_dssp --------EEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC-
T ss_pred --------EEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEecc
Confidence 23344444443332123333222221 22345689999 89999999999999999999999999988764
No 165
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.63 E-value=5.9e-16 Score=168.85 Aligned_cols=207 Identities=13% Similarity=0.108 Sum_probs=121.6
Q ss_pred CCCCCCCCCCCCccCCCccccccc---ccccCCCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccCC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKA---QEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSS 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~---~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~ 305 (610)
.+.+.|+|.+.+..+.... .+.. .....+|.+........+.+|+.++|.|.+.|. |.| +|+|+++|..+....
T Consensus 188 ~d~G~Y~C~a~n~~~~~~~-~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~ 266 (523)
T 2rcj_C 188 KSHRSYSCQVTHEGSTVEK-TVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHT 266 (523)
T ss_pred CCCceEEEEEEecCccccc-ceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEe
Confidence 4778899998776543221 1111 112345666644444566899999999999987 888 899999998754322
Q ss_pred ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcccccccc-ccCCccee-ehhhhHHHHH
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTL-SKTDSWYM-LVLGISVCVV 383 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~-~~~~~~~~-~~~~~~~~~~ 383 (610)
..... ..++.+...+.|.|.+++.+| |.|+|.|.|..|.....+.|.|... |.+ ...+.... +..+..+
T Consensus 267 ~~~~~--~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~---P~~~~~~p~~~~~v~~g~~~--- 337 (523)
T 2rcj_C 267 FPAVL--QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL---PSVFLFPPKPKDTLMISRTP--- 337 (523)
T ss_pred CCcEe--cCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC---ceEEecCCCchhhcccCCce---
Confidence 21111 122233456799999999999 9999999999999877777766422 221 11221111 1112222
Q ss_pred HHHHhheeEEEEEEeeecc------cccccccCCccc----cccccc------cccceeeeeeeeccCcceeeeecCCCc
Q psy10487 384 SVIVSIGMSFCVCRAHEHK------NKRRKRKGKMKQ----SVSFND------QEKKLLDVSITTTDRHTGSCEALGSQP 447 (610)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~------~~~~L~i~~v~~~D~G~Y~C~A~N~~G 447 (610)
.+.|...+.+ ...|.+.+..-. ...... ....|.|.++..+|+|.|+|.|.|..|
T Consensus 338 ---------~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~ 408 (523)
T 2rcj_C 338 ---------EVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKAL 408 (523)
T ss_pred ---------EEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCC
Confidence 2223322211 112222111000 000011 123478888888999999999999888
Q ss_pred ceeeeeecc
Q psy10487 448 DMELIEQSL 456 (610)
Q Consensus 448 ~~~~~~~l~ 456 (610)
.......+.
T Consensus 409 ~~~~~~~~~ 417 (523)
T 2rcj_C 409 PAPIEKTIS 417 (523)
T ss_pred CCceeEEEE
Confidence 766555444
No 166
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.63 E-value=3.7e-16 Score=150.10 Aligned_cols=166 Identities=11% Similarity=0.076 Sum_probs=102.1
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeee--EEEEEecCCCCCeE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV--SITLFNVTDLDAGE 336 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~ 336 (610)
-+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+...... .... ...+ .|.|.+++.+|+|.
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~--~~~~-----~~~~~~~L~I~~v~~~D~G~ 78 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR--RLKF-----WNETDPEFVIDHMDANKAGR 78 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE--ECC---------CCCEEEECSCCGGGCEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccc--cCCC-----CcceeeEEEEcccccccCEE
Confidence 4677777776 57899999999999987 78899999998765432210 0000 1224 89999999999999
Q ss_pred EEEEeecCCcce--eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCCc
Q psy10487 337 YTCYAENIRGNA--SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKM 412 (610)
Q Consensus 337 Y~C~a~N~~G~~--~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 412 (610)
|+|.|.|..|.. +..+.|.|.+....|.+...+.... ..+..+ .+.|.....+ ...|.+.+..
T Consensus 79 Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v-~~G~~v------------~L~C~~~~~~~~~~~W~k~g~~ 145 (218)
T 1uct_A 79 YQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVL-MPGENI------------SLTCSSAHIPFDRFSLAKEGEL 145 (218)
T ss_dssp EEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEE-CTTCCC------------EEEEECSSSCCSEEEEEETTCS
T ss_pred EEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCcc-CCCCCE------------EEEEeCCCCCCCEEEEEECCCc
Confidence 999999987643 4457777755444455443333222 222221 2233111111 1112111110
Q ss_pred c-ccccccccccceeeeeeeeccCcceeeeecCCC
Q psy10487 413 K-QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQ 446 (610)
Q Consensus 413 ~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~ 446 (610)
. ........++.|.|.+++.+|+|.|+|.|.|..
T Consensus 146 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 180 (218)
T 1uct_A 146 SLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNR 180 (218)
T ss_dssp SCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred ccccccCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence 0 011122346789999999999999999999864
No 167
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.63 E-value=1e-16 Score=152.48 Aligned_cols=168 Identities=11% Similarity=0.043 Sum_probs=107.5
Q ss_pred cCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEE
Q psy10487 274 AGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352 (610)
Q Consensus 274 ~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 352 (610)
.++.+.|.|.+.|. |.|.+.|+++|..+....+.......+ ...|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~ 89 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE------QIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 89 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETT------EEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCC------EEEEEECCCCcccCEEEEEEEecCCcceEEEE
Confidence 57778899998885 689999999999987654432222111 23699999999999999999999999888888
Q ss_pred EEEcCcc------------------ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--cccccccCCc
Q psy10487 353 SLDLPEI------------------NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKM 412 (610)
Q Consensus 353 ~L~V~~~------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 412 (610)
.|.|... ..++.+...+....+..+.. +.+.|...+.+ ...|.+.+..
T Consensus 90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~------------~~l~C~~~g~p~p~v~W~~~~~~ 157 (212)
T 2r15_A 90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKA------------LNLTCNVWGDPPPEVSWLKNEKA 157 (212)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCC------------EEEEEEEECSSCCEEEEEETTEE
T ss_pred EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCe------------EEEEEEEcCCCCceEEEEECCeE
Confidence 8876320 01111222222222222221 12233333332 2333322211
Q ss_pred ---ccccccc---ccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 413 ---KQSVSFN---DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 413 ---~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
....... +....|.|.+++.+|+|.|+|.|.|..|..+....|.|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp ECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 1111111 2234899999999999999999999999998888887764
No 168
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=1.9e-15 Score=139.55 Aligned_cols=120 Identities=28% Similarity=0.489 Sum_probs=96.5
Q ss_pred cEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccc
Q psy10487 108 VEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN 187 (610)
Q Consensus 108 ~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 187 (610)
+.+++++|++..++...+ .+|+.|+|++|.++.+.+..|.++++|+.|+|++|+|+.+++..|..+.+|+.|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 567777777777765332 67777777777777777777777888888888888888887777778888888888888
Q ss_pred cccccCcccccCCCcccEEecCCCcccccCC-chhhHHHHhhcc
Q psy10487 188 RLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLKSK 230 (610)
Q Consensus 188 ~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~-l~~~~~~l~~~~ 230 (610)
+|+.++...|..+++|+.|++++|+|.|+|. +.++..|+....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~ 135 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT 135 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcc
Confidence 8888888778889999999999999999996 889999987543
No 169
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.63 E-value=3.1e-16 Score=173.43 Aligned_cols=223 Identities=17% Similarity=0.114 Sum_probs=131.7
Q ss_pred CCCCCCCCCCCCccCCCcc----cccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeE----EEEe--CCE-
Q psy10487 231 LYSHPLSCTEPGMLQTKHW----DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTI----LWLL--NGQ- 299 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~----~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v----~W~~--~g~- 299 (610)
.+.+.|+|.+.+. ++... ..+.. .+..+|.+...+....+.+|+.++|.|.+.|.|.|.+ .|++ +|.
T Consensus 300 ~d~G~Y~C~a~n~-g~~~~~~~~~~~~l-~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~ 377 (585)
T 2ocw_A 300 EDAGRYLCGAHSD-GQLQEGSPIQAWQL-FVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRC 377 (585)
T ss_pred hhCEEEEEEEEcC-CCccccCceeeEEE-EEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCC
Confidence 4667899998774 22111 12211 2234677777778888999999999999999999987 7999 887
Q ss_pred -EeccCCccceeeccCCceee---ee--eEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCccee
Q psy10487 300 -VLHNSSFDLLEEEEGDALFE---KS--VSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYM 373 (610)
Q Consensus 300 -~l~~~~~~~~~~~~~~~~~~---~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~ 373 (610)
.+............++.... .. ..|.|.+++.+|+|.|+|.| |..|.....+.|.|.+. +|.+.. +....
T Consensus 378 ~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~--~p~~~~-~~~~~ 453 (585)
T 2ocw_A 378 PLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEG--EPNLKV-PGNVT 453 (585)
T ss_pred ceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecC--cccccc-CCcee
Confidence 44322110000000000000 11 25999999999999999999 99999988999988542 222222 33333
Q ss_pred ehhhhHHHHHHHHH----hheeEEEEEEeeecccccccccCCccccccc---cccccceeeeeeeeccCcceeeeecCCC
Q psy10487 374 LVLGISVCVVSVIV----SIGMSFCVCRAHEHKNKRRKRKGKMKQSVSF---NDQEKKLLDVSITTTDRHTGSCEALGSQ 446 (610)
Q Consensus 374 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~A~N~~ 446 (610)
+..+..+.+.|.+. +.+.+.+.|.+.+.......... ....... ......|.|.+++.+|+|.|+|.|.|..
T Consensus 454 v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 532 (585)
T 2ocw_A 454 AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEG-PSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGH 532 (585)
T ss_pred EecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCC-CCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCC
Confidence 33333333333322 22222333333222111000000 0000011 1223589999999999999999999999
Q ss_pred cceeee-eecccccC
Q psy10487 447 PDMELI-EQSLAMEQ 460 (610)
Q Consensus 447 G~~~~~-~~l~v~~~ 460 (610)
|..+.. +.|.|.++
T Consensus 533 G~~~~~~~~l~V~~~ 547 (585)
T 2ocw_A 533 FYGETAAVYVAVEER 547 (585)
T ss_pred CccEEEEEEEEEEee
Confidence 977754 67777654
No 170
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.63 E-value=2.1e-17 Score=167.62 Aligned_cols=210 Identities=9% Similarity=0.014 Sum_probs=127.3
Q ss_pred cCCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEe----------cCCCeEEEEeCCE
Q psy10487 230 KLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG----------DPEPTILWLLNGQ 299 (610)
Q Consensus 230 ~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g----------~P~p~v~W~~~g~ 299 (610)
..+.+.|+|.+.+..+... ..+.... ..+|.+...+....+.+|+.+.|.|.+.| .|.|.+.|++++.
T Consensus 70 ~~d~G~Y~C~~~n~~g~~~-~~~~l~v-~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~ 147 (317)
T 2y25_A 70 KKDAGIYEVILKDDRGKDK-SRLKLVD-EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS 147 (317)
T ss_dssp STTCSCEEEEEESSSCEEE-EEECCST-HHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSS
T ss_pred cccCeEEEEEEECCCCcEE-EEEEEEE-ecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCE
Confidence 3467889998866544221 1111111 11233333344555667888888888877 7999999999998
Q ss_pred EeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcc-----------------ccc
Q psy10487 300 VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI-----------------NLA 362 (610)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~-----------------~~~ 362 (610)
.+....+....... ....|.|.+++.+|+|.|+|.|.|..|....++.+.|... ...
T Consensus 148 ~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 221 (317)
T 2y25_A 148 AIRYSDRVKTGVTG------EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 221 (317)
T ss_dssp BCCCCSSEEEEECS------SEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ECCCCCCeEEeccC------CEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCC
Confidence 88765432222111 1246999999999999999999999999988888876311 001
Q ss_pred ccccc-CCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccccccCCc---ccccccc---ccccceeeeeeeec
Q psy10487 363 TTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRRKRKGKM---KQSVSFN---DQEKKLLDVSITTT 433 (610)
Q Consensus 363 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~---~~~~~L~i~~v~~~ 433 (610)
|.+.. .+....+..+..+ .+.|...+. +...|.+.+.. ....... .....|.|.+++.+
T Consensus 222 p~~~~~~~~~~~v~~g~~~------------~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 289 (317)
T 2y25_A 222 ARVLGGLPDVVTIQEGKAL------------NLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA 289 (317)
T ss_dssp CEEEEBCCSEEEEETTSBB------------CEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCST
T ss_pred CcccccCCccEEEEcCCEE------------EEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHH
Confidence 11111 1222222222221 223333322 22233322211 1111111 22238999999999
Q ss_pred cCcceeeeecCCCcceeeeeeccccc
Q psy10487 434 DRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 434 D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
|+|.|+|.|.|..|..+..+.|.|..
T Consensus 290 d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 290 DSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp TCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred HCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 99999999999999999988887763
No 171
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=146.01 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=115.8
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+ ..+..+.+.+|+.++|.|.+.|.|.|.|.|+++|..+............. ...+.|.|.+++.+|+|.|+
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~ 92 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNT----PSASYLEVTPDSENDFGNYN 92 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEE----TTEEEEEECCCSGGGCEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecC----CCeeEEEEecCChhhCeEEE
Confidence 35666 46667889999999999999999999999999999887654322221111 11468999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccccccccCC---cceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccc
Q psy10487 339 CYAENIRGNASGEISLDLPEINLATTLSKTD---SWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQS 415 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (610)
|.|.|..|.....+.|.|...+.+|...... ....+..... ....+.++..+....+..... .|......
T Consensus 93 C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p----~~~~~~pi~~y~v~~~~~~~~---~w~~~~~~ 165 (215)
T 3mtr_A 93 CTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEP----EATGGVPILKYKAEWRAVGEE---VWHSKWYD 165 (215)
T ss_dssp EEEECSSCEEEEEEEEEECCCCCCCEEEEEEEETTEEEEEEECC----SCCCSSCEEEEEEEEEETTCC---CCEEEEEE
T ss_pred EEEEECCCceEEEEEEEECCCCCCCcceEEEEecceEEEEEecC----CccCCCceEEEEEEEEECCCC---cccccccc
Confidence 9999999999999999986555444322110 0000000000 000000111000000110000 01100000
Q ss_pred ccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 416 VSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 416 ~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
......+..|.|.++...|.|.|.|.|.|..|..+.+..+.+.
T Consensus 166 ~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~ 208 (215)
T 3mtr_A 166 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 208 (215)
T ss_dssp HHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred cccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence 1111223679999999999999999999999987776666544
No 172
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.63 E-value=2.2e-16 Score=149.81 Aligned_cols=175 Identities=13% Similarity=0.065 Sum_probs=107.9
Q ss_pred eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc------cc-eee---ccCCceeeeeeEEEEEecCCC
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF------DL-LEE---EEGDALFEKSVSITLFNVTDL 332 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~------~~-~~~---~~~~~~~~~~~~L~I~~v~~~ 332 (610)
+.+.+....+.+|++++|.|.+.+.|.+.+.|++++........ .. ... ..++......+.|.|.+++.+
T Consensus 2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~ 81 (208)
T 3r4d_A 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMK 81 (208)
T ss_dssp CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGG
T ss_pred ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccccc
Confidence 34556667889999999999998999999999987543221110 00 000 011111222358999999999
Q ss_pred CCeEEEEEeecCC-cceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc-cccccccC
Q psy10487 333 DAGEYTCYAENIR-GNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK-NKRRKRKG 410 (610)
Q Consensus 333 D~G~Y~C~a~N~~-G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 410 (610)
|+|.|+|.+.|.. +.....+.|.|......|.+...... +..+.. +.+.|.....+ ...|.+.+
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~------------v~l~C~~~~~pp~i~W~~~g 147 (208)
T 3r4d_A 82 DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDS------------VTLTCLSNDIGANIQWLFNS 147 (208)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCC------------EEEEEECSCTTCEEEEEETT
T ss_pred CCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCC------------EEEEEECCCCCCceEEEECC
Confidence 9999999999995 66777888888654444444333332 111111 12233322221 11222211
Q ss_pred C---ccccccccccccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487 411 K---MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL 451 (610)
Q Consensus 411 ~---~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 451 (610)
. ..........+..|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 148 ~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s 191 (208)
T 3r4d_A 148 QSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS 191 (208)
T ss_dssp EECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEEC
T ss_pred EeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccC
Confidence 1 1112222334478999999999999999999999998665
No 173
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.62 E-value=6.5e-16 Score=154.57 Aligned_cols=175 Identities=21% Similarity=0.266 Sum_probs=109.3
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
++|.+...+..+.+.+|+.++|.|.+.|.|. .+.|++ +|..+....+..... ++ ....|.|.+++.+|+|.|
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~-~~-----~~~~L~i~~~~~~D~G~Y 75 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK-EG-----VRSRLTIYNANIEDAGIY 75 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEE-ET-----TEEEEEECSCCGGGCEEE
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEec-CC-----CEEEEEEccCCcccCEEE
Confidence 5788999999999999999999999999885 899999 676665443321111 11 124899999999999999
Q ss_pred EEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccc
Q psy10487 338 TCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSV 416 (610)
Q Consensus 338 ~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (610)
+|.|.|..|.. ...+.|.|.. +|.+...+....+..+..+.+.|.+.+.+...+.|.+....... .....
T Consensus 76 ~C~~~n~~g~~~~~~~~l~v~~---~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------~~~~~ 146 (291)
T 2wim_A 76 RCQATDAKGQTQEATVVLEIYQ---KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT------ISDNR 146 (291)
T ss_dssp EEEEECSSSCEEEEEEEEEEEC---CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CB------CCCSS
T ss_pred EEEEecccCceEEEEEEEEecC---CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccc------cCCce
Confidence 99999999876 4577777732 23333333333222222222222222222222222222211100 00111
Q ss_pred cccccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487 417 SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDM 449 (610)
Q Consensus 417 ~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 449 (610)
.....++.|.|.+++.+|+|.|+|.|.|..+..
T Consensus 147 ~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~ 179 (291)
T 2wim_A 147 FAMLANNNLQILNINKSDEGIYRCEGRVEARGE 179 (291)
T ss_dssp EEECTTSCEEETTCCGGGCEEEEEEEEETTTTE
T ss_pred EEEccCCCEEEEecchhhCEEEEEEEEECCCCe
Confidence 112345679999999999999999999987543
No 174
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.62 E-value=4.1e-16 Score=147.10 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=103.4
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+. ..+.+|++++|.|.+.|.|. .+.|+|+|..+.......... ...+.|.|.+++.+|+|.|+|
T Consensus 5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~-------~~~~~L~i~~v~~~D~G~Y~C 75 (198)
T 1ugn_A 5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQEL-------VKKGQFPIPSITWEHTGRYRC 75 (198)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHH-------HTTTEEEESSCCGGGCEEEEE
T ss_pred CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccC-------CcccEEEECCCCHHHCeEEEE
Confidence 577777666 47889999999999999876 799999998764321110001 112489999999999999999
Q ss_pred EeecCC-c--ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-ccccccccCCcc--
Q psy10487 340 YAENIR-G--NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-KNKRRKRKGKMK-- 413 (610)
Q Consensus 340 ~a~N~~-G--~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 413 (610)
.|.|.. | ..+..+.|.|......|.+...+...... +..+ .+.|..... +...|.+.+...
T Consensus 76 ~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~-G~~v------------~L~C~~~~~~~~v~W~k~g~~~~~ 142 (198)
T 1ugn_A 76 YYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNS-GGNV------------TLQCDSQVAFDGFILCKEGEDEHP 142 (198)
T ss_dssp EEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEET-TCCE------------EEEEECSSCCSEEEEEEC------
T ss_pred EEECCCCCcccCCccEEEEEcccccCCccccCCccccCC-CCcE------------EEEEecCCCCcEEEEEECCCccCC
Confidence 999988 6 34567778775533344443333222222 2221 223332222 111222211110
Q ss_pred cccc--c---cccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 414 QSVS--F---NDQEKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 414 ~~~~--~---~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
.... . ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus 143 ~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~ 182 (198)
T 1ugn_A 143 QCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSP 182 (198)
T ss_dssp CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTST
T ss_pred ccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCC
Confidence 0000 0 112468999999999999999999998764
No 175
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.62 E-value=9.8e-17 Score=184.75 Aligned_cols=208 Identities=17% Similarity=0.170 Sum_probs=132.4
Q ss_pred CCCCCCCCCCCccCCCcccccccccccCCCceee-eecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccce
Q psy10487 232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI-KESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 232 ~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~-~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~ 309 (610)
+.+.|+|.+.+..+......+.... ..+|.+.. ......+.+|+.++|.|.+.+.|.| .+.|+++|..+........
T Consensus 591 d~G~Y~C~a~n~~g~~~~~~~~v~v-~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~ 669 (816)
T 3dmk_A 591 DQATYTCVAKNQEGYSARGSLEVQV-MVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITT 669 (816)
T ss_dssp HCEEEEEEEEESSSCEEEEEEEEEE-ECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEE
T ss_pred cCEEEEEEEEECCCceeeeeEEEEE-ecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeE
Confidence 5678999987765432222222222 23344332 3355668899999999999876665 8999999988865433221
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI 389 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (610)
.... ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.|. .+|.+...+....+..+..+.
T Consensus 670 ~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~---~~P~~~~~~~~~~v~~G~~v~-------- 733 (816)
T 3dmk_A 670 SRVG-----RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY---VPPRWILEPTDKAFAQGSDAK-------- 733 (816)
T ss_dssp EEET-----TTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE---EEEEEEECCCCEEEETTCCEE--------
T ss_pred EEcC-----CCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE---eCCceeeecccceecCCCcEE--------
Confidence 1111 123589999999999999999999999999999888884 334444444433333222211
Q ss_pred eeEEEEEEeeecccccccccCCc--------cccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 390 GMSFCVCRAHEHKNKRRKRKGKM--------KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
+.|.....+.+...|.+.... .........++.|.|.+++.+|+|.|+|.|.|..|.+..+..+...
T Consensus 734 --l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~ 808 (816)
T 3dmk_A 734 --VECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808 (816)
T ss_dssp --EECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEE
T ss_pred --EEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEe
Confidence 233333333333344332211 0000111245689999999999999999999999999887776544
No 176
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=3.8e-15 Score=153.56 Aligned_cols=169 Identities=23% Similarity=0.254 Sum_probs=127.0
Q ss_pred cEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487 37 KSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n 115 (610)
+.++..+.++..++. .-..+|+.|++++|.+..+.. +. .+.+|+.|++++|.+..+.+ +..+++|++|+|++|
T Consensus 158 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred cEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--cc--CCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence 567777777777663 223578888888888887765 44 57788888888888877755 777888888888888
Q ss_pred CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcc
Q psy10487 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195 (610)
Q Consensus 116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 195 (610)
++..+++ +..+++|+.|+|++|.++.+. .+..+++|+.|++++|++..+ ..+..+++|+.|++++|.+......
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 8877765 777788888888888877763 467778888888888888776 3467777888888888888777777
Q ss_pred cccCCCcccEEecCCCcccccC
Q psy10487 196 VFFPTPNLKTLSLDGNPWCCDC 217 (610)
Q Consensus 196 ~~~~~~~L~~l~l~~N~~~c~c 217 (610)
.+..+++|+.|++++|++....
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCG
T ss_pred HhhccccCCEEEccCCcccccc
Confidence 7777788888888888776543
No 177
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=161.13 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=110.7
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
.+|.+.. +....+.+|+.++|.|.+.|. |.|.+.|+++|..+....+.... .....|.|.+++.+|+|.|
T Consensus 6 ~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~--------~~~~~L~i~~~~~~d~G~Y 76 (317)
T 2y25_A 6 TGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--------DGICTLLITEFSKKDAGIY 76 (317)
T ss_dssp SCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------------CCEEEEETTCCSTTCSCE
T ss_pred CCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE--------CCeEEEEEccCCcccCeEE
Confidence 4577764 446889999999999999988 88999999999988754432111 1225899999999999999
Q ss_pred EEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee------------ccccc
Q psy10487 338 TCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE------------HKNKR 405 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 405 (610)
+|.|.|..|.....+.|.|... |.+..... ...+.....+.+.|.... .+...
T Consensus 77 ~C~~~n~~g~~~~~~~l~v~~~---~~~~~~~~------------~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~ 141 (317)
T 2y25_A 77 EVILKDDRGKDKSRLKLVDEAF---KELMMEVC------------KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVN 141 (317)
T ss_dssp EEEEESSSCEEEEEECCSTHHH---HHHHHHHH------------HHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEE
T ss_pred EEEEECCCCcEEEEEEEEEecC---ccccccCC------------ceecccCCCeEEEeeccccEEEEEeccCCCCcEEE
Confidence 9999999998877777666321 11100000 000000011111222111 22222
Q ss_pred ccccCCc---cccccc--cccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 406 RKRKGKM---KQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 406 ~~~~~~~---~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
|.+.+.. ...... ......|.|.+++.+|+|.|+|.|.|..|..+....+.+.
T Consensus 142 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 199 (317)
T 2y25_A 142 WSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 199 (317)
T ss_dssp EEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred EEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeee
Confidence 3222111 011111 1223359999999999999999999999998888777643
No 178
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.62 E-value=1.3e-15 Score=142.48 Aligned_cols=163 Identities=16% Similarity=0.081 Sum_probs=102.5
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+....... . .....+.|.|.+++.+|+|.|+|
T Consensus 4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~--~-----~~~~~~~L~I~~v~~~D~G~Y~C 74 (188)
T 1oll_A 4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP--P-----ERINKVKFYIPDMNSRMAGQYSC 74 (188)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS--C-----TTCCEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccccc--C-----CCcceeEEEeCcCCcccCeEEEE
Confidence 5777777766 7899999999999876 457899999998765321100 0 01234689999999999999999
Q ss_pred EeecCCcc--eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccc-
Q psy10487 340 YAENIRGN--ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSV- 416 (610)
Q Consensus 340 ~a~N~~G~--~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 416 (610)
.|.|..|. .+..+.|.|.+....|.+...+......+ ..+ ...|.....+. ...|.+.+..+
T Consensus 75 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G-~~v------------~L~C~~~~~~~--~~~w~k~g~~~~ 139 (188)
T 1oll_A 75 IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISG-EKV------------TFYCRLDTATS--MFLLLKEGRSSH 139 (188)
T ss_dssp EEEETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETT-CEE------------EEEEECSSSCS--EEEEEEESSSCE
T ss_pred EecCCCCCCCCCCceEEEecccCCCCeEEECCCCccccC-CEE------------EEEEEcCCCCC--EEEEEECCcccc
Confidence 99998664 34567777754443444443333222222 111 22332221111 01111111111
Q ss_pred ---cccccccceeeeeeeeccCcceeeeecCCC
Q psy10487 417 ---SFNDQEKKLLDVSITTTDRHTGSCEALGSQ 446 (610)
Q Consensus 417 ---~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~ 446 (610)
.....++.|.|.+++.+|+|.|+|.|.|..
T Consensus 140 ~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 140 VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp EEEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred ccccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence 122456789999999999999999999864
No 179
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=1.6e-15 Score=151.10 Aligned_cols=153 Identities=22% Similarity=0.282 Sum_probs=138.0
Q ss_pred cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEee
Q psy10487 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN 137 (610)
Q Consensus 58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls 137 (610)
..++..+..+..++.... .+|++|+|++|.+..+.+..|.++++|++|+|++|++..+.+..|.++++|++|+|+
T Consensus 10 ~~~~c~~~~l~~ip~~l~-----~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP-----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TEEECTTSCCSSCCSSSC-----TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEEecCCCccccCCCCC-----CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC
Confidence 356777778888876432 479999999999999998899999999999999999999999899999999999999
Q ss_pred CccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC-cccccCCCcccEEecCCCcccc
Q psy10487 138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS-ESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 138 ~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~N~~~c 215 (610)
+|.++.+.+..|.++++|+.|++++|++..+.+..+..+++|+.|++++|.++.+. +..+..+++|+.|++++|.+..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 99999999889999999999999999999998777899999999999999999865 6678889999999999998764
No 180
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.62 E-value=3e-15 Score=167.10 Aligned_cols=176 Identities=19% Similarity=0.298 Sum_probs=80.4
Q ss_pred cEEEcCCCCCCccCcccCC----CccEEEeecCCCCCCChhhhc-----ccCCCCccEEEcccCCCcccchhhhcCCCCC
Q psy10487 37 KSALCKDANFTALPSTLDS----DIQVLDLNNNKISYLTKEAFK-----SIGLLNLQRIYLKNSGIREVHRDTFKYLTIL 107 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l~~----~L~~L~L~~n~i~~l~~~~~~-----~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L 107 (610)
+.++..+++++.+|..+.. +|++|+|++|.|+...+..|. ...+.+|++|+|++|.+..++...|..+++|
T Consensus 380 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L 459 (636)
T 4eco_A 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459 (636)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred cEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence 3455555555555543321 455555555555443333222 0123345555555555555544444445555
Q ss_pred cEEEccCCCCCCCCcccccCCC-------CCcEEEeeCccccccCcCcC-CCCCCccEEEccCccccccCHHHhhcCccc
Q psy10487 108 VEVDLSDNQIAWLHQDTFLGND-------RLKVLYLNGNPITELRAGQF-PKLPYLKTIELQHCQIHSVHKDALIHLTAL 179 (610)
Q Consensus 108 ~~LdLs~n~l~~l~~~~f~~l~-------~L~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (610)
++|+|++|+|..++...|.... +|+.|+|++|.++.++...+ ..+++|+.|+|++|+|+.+ +..+..+++|
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~L 538 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTL 538 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSSC
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCCC
Confidence 5555555555544444333322 45555555555554433222 2445555555555555443 2334444455
Q ss_pred cccccc------cccccccCcccccCCCcccEEecCCCcc
Q psy10487 180 ESLNLN------GNRLKHLSESVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 180 ~~L~L~------~n~l~~~~~~~~~~~~~L~~l~l~~N~~ 213 (610)
+.|+|+ +|++.+..+..+..+++|+.|++++|.+
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 555442 2333333333444444445555554444
No 181
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.61 E-value=7.8e-16 Score=145.94 Aligned_cols=171 Identities=13% Similarity=0.164 Sum_probs=100.8
Q ss_pred eeeeecceE-eecCceEEEEEEEEecCCCeEEEEeCC-EEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487 263 VTIKESMVI-REAGGNVTMSCYVYGDPEPTILWLLNG-QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY 340 (610)
Q Consensus 263 i~~~~~~~~-v~~G~~v~l~C~~~g~P~p~v~W~~~g-~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 340 (610)
+.+.+.... +.+|++++|.|.+.|.|.|.+.|++.. ..+.. ... ..+ ..+.|.|.+++.+|+|.|+|.
T Consensus 3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~----~~~-~~~-----~~~~L~I~~v~~~D~G~Y~C~ 72 (202)
T 1vca_A 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG----KVT-NEG-----TTSTLTMNPVSFGNEHSYLCT 72 (202)
T ss_dssp EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSS----EEE-EET-----TEEEEEESSCCGGGCSEEEEE
T ss_pred EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccc----eEE-EcC-----CccEEEECcCCHHHCEEEEEE
Confidence 344555544 459999999999999999999999843 21110 000 011 134799999999999999999
Q ss_pred eecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccc-----ccccccCCc--c
Q psy10487 341 AENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKN-----KRRKRKGKM--K 413 (610)
Q Consensus 341 a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~ 413 (610)
|.|..|..+..+.|.|...+..+.+... ..+..+.. +...|...+.+. ..|.+.+.. .
T Consensus 73 a~n~~~~~~~~~~l~V~~~p~~~~~~~~---~~~~~G~~------------~~L~C~~~~~~p~~~~~i~W~k~~~~l~~ 137 (202)
T 1vca_A 73 ATCESRKLEKGIQVEIYSFPKDPEIHLS---GPLEAGKP------------ITVKCSVADVYPFDRLEIDLLKGDHLMKS 137 (202)
T ss_dssp EEETTEEEEEEEEEEEEBCCSCCEEEES---SCEETTSC------------EEEEEEEEEEBSGGGEEEEEEETTEEEEE
T ss_pred EEECCceEeeEEEEEEEeCCCCCEeCCc---eEEcCCCC------------EEEEEEECCcCCCCCeEEEEEeCCeECcc
Confidence 9999998888899988543332222221 11111111 123444333211 123222110 0
Q ss_pred cccc-------ccccccceeeeeeeeccCcceeeeecCCCcce-------eeeeecccc
Q psy10487 414 QSVS-------FNDQEKKLLDVSITTTDRHTGSCEALGSQPDM-------ELIEQSLAM 458 (610)
Q Consensus 414 ~~~~-------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-------~~~~~l~v~ 458 (610)
.... .......|.|..+..+|.|.|+|.|.|..|.. +....|.|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~ 196 (202)
T 1vca_A 138 QEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196 (202)
T ss_dssp EECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEE
T ss_pred cccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEe
Confidence 0000 01122345667677778899999999998863 344555555
No 182
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=3e-15 Score=163.33 Aligned_cols=137 Identities=21% Similarity=0.286 Sum_probs=97.8
Q ss_pred CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487 36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n 115 (610)
...+++.+++++.+|..++.+|++|+|++|.|+.++ . .+++|++|+|++|.|+.++. |.. +|++|+|++|
T Consensus 61 L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN 130 (571)
T ss_dssp CSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS
T ss_pred ccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC
Confidence 578999999999999888899999999999999887 2 36788888888888888765 544 7778888888
Q ss_pred CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194 (610)
Q Consensus 116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 194 (610)
+|+.++. .+++|+.|+|++|.++.++. .+++|+.|+|++|+|+.++. |. .+|+.|+|++|+|+.++.
T Consensus 131 ~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 131 QLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp CCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred cCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence 7777654 45667777777777666543 34556666666666655533 32 455555555555555444
No 183
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=2.9e-15 Score=163.51 Aligned_cols=156 Identities=20% Similarity=0.314 Sum_probs=135.7
Q ss_pred CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487 36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n 115 (610)
-+.++..+++++.+| .+..+|++|+|++|.|+.++. |. + +|++|+|++|.|+.++. .+++|++|+|++|
T Consensus 82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 82 ITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE----LPALLEYINADNN 150 (571)
T ss_dssp CSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CC--T--TCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred CCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hh--c--CCCEEECCCCcCCCCCC----cCccccEEeCCCC
Confidence 478999999999999 778899999999999999887 54 2 89999999999999875 6889999999999
Q ss_pred CCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccc-------ccccccccc
Q psy10487 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL-------ESLNLNGNR 188 (610)
Q Consensus 116 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~ 188 (610)
+|+.++. .+++|+.|+|++|.++.++. |. ++|+.|+|++|+|+.++. |.. +| +.|+|++|+
T Consensus 151 ~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 151 QLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp CCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSC
T ss_pred ccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCc
Confidence 9999875 57899999999999999766 55 899999999999998865 443 67 999999999
Q ss_pred ccccCcccccCCCcccEEecCCCcccc
Q psy10487 189 LKHLSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 189 l~~~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
|+.++...+ .+++|+.|++++|++.+
T Consensus 219 l~~lp~~l~-~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 219 ITHIPENIL-SLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCCCCGGGG-GSCTTEEEECCSSSCCH
T ss_pred ceecCHHHh-cCCCCCEEEeeCCcCCC
Confidence 999987665 49999999999999876
No 184
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=5e-16 Score=157.67 Aligned_cols=175 Identities=17% Similarity=0.106 Sum_probs=106.4
Q ss_pred CcEEEcCCCCCC-ccCccc----CCCccEEEeecCCCCCCCh----hhhcccCCCCccEEEcccCCCcccchhhhcCCCC
Q psy10487 36 KKSALCKDANFT-ALPSTL----DSDIQVLDLNNNKISYLTK----EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI 106 (610)
Q Consensus 36 ~~~~~C~~~~l~-~lP~~l----~~~L~~L~L~~n~i~~l~~----~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~ 106 (610)
-+.++..+++++ .+|..+ ..+|++|+|++|.|+.... ..+. .+++|++|+|++|.+..+.+..|+.+++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 356666666665 334333 3467777777777765322 2222 4667777777777777777777777777
Q ss_pred CcEEEccCCCCCC---CC-cccccCCCCCcEEEeeCccccccCcC---cCCCCCCccEEEccCccccccCHHHhhcC---
Q psy10487 107 LVEVDLSDNQIAW---LH-QDTFLGNDRLKVLYLNGNPITELRAG---QFPKLPYLKTIELQHCQIHSVHKDALIHL--- 176 (610)
Q Consensus 107 L~~LdLs~n~l~~---l~-~~~f~~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--- 176 (610)
|++|+|++|++.. +. ...+..+++|++|+|++|.++.+... .+..+++|+.|+|++|+|..+.+..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 7777777777643 21 12235566677777777766544321 23455667777777777666644444443
Q ss_pred ccccccccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 177 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
++|+.|+|++|+|+.++...+ ++|+.|++++|.+..
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNR 286 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCS
T ss_pred CcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCC
Confidence 466777777777766654332 466666777666653
No 185
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.61 E-value=2.4e-15 Score=159.92 Aligned_cols=126 Identities=15% Similarity=0.254 Sum_probs=85.1
Q ss_pred CCCCCCCCCCCCccCCCcc--cccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCC-eEEEEeCCEEeccCC-
Q psy10487 231 LYSHPLSCTEPGMLQTKHW--DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEP-TILWLLNGQVLHNSS- 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~--~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p-~v~W~~~g~~l~~~~- 305 (610)
.+.+.|+|.+.+....... ..+.......+|.+...+....+.+|+.++|.|.+.| .|.| .|.|+++|..+....
T Consensus 85 ~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 164 (438)
T 1qgc_4 85 DDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 164 (438)
T ss_dssp GGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE
T ss_pred cCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCce
Confidence 3678899998776532111 1222222224677766554444456889999999988 6778 899999999887652
Q ss_pred ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 356 (610)
.........++.+...+.|.|.+++.+|+|.|+|.|.|..|.....+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~ 215 (438)
T 1qgc_4 165 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 215 (438)
T ss_dssp EEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEET
T ss_pred eccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccccc
Confidence 111222223334455679999999999999999999999998655555543
No 186
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3.1e-15 Score=150.28 Aligned_cols=148 Identities=23% Similarity=0.331 Sum_probs=133.4
Q ss_pred CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV 133 (610)
Q Consensus 54 ~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~ 133 (610)
..+|+.|++++|.|+.++. +. .+++|++|+|++|.+..+.+ |..+++|++|+|++|++..++. +..+++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCE
T ss_pred cCcccEEEccCCCcccChh--Hh--cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence 3589999999999999863 55 68999999999999999876 8999999999999999998754 899999999
Q ss_pred EEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487 134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 134 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~ 213 (610)
|+|++|.++.+. .+..+++|+.|+|++|+++.+ ..+..+++|+.|++++|+++++.+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 999999999874 478899999999999999998 568899999999999999999876 78899999999999987
Q ss_pred cc
Q psy10487 214 CC 215 (610)
Q Consensus 214 ~c 215 (610)
..
T Consensus 191 ~~ 192 (291)
T 1h6t_A 191 SD 192 (291)
T ss_dssp CB
T ss_pred CC
Confidence 54
No 187
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.7e-15 Score=141.56 Aligned_cols=147 Identities=20% Similarity=0.231 Sum_probs=127.6
Q ss_pred CcEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 36 KKSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
-+.+++.+++++.+| .+ ..+|++|+|++|.++.++ .+. ++++|++|+|++|.+....+..|..+++|++|+|+
T Consensus 46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 367899999999988 44 458999999999888765 455 68999999999999998777789999999999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCcc-ccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccc
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNP-ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 191 (610)
+|++....+..|..+++|++|+|++|. ++.+. .+..+++|+.|++++|+++.+. .+..+++|+.|++++|+|.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 999998777889999999999999998 88875 4888999999999999999885 67889999999999998754
No 188
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.61 E-value=7.3e-16 Score=158.06 Aligned_cols=179 Identities=15% Similarity=0.093 Sum_probs=115.6
Q ss_pred CCceeeeecceEeecCceEEEEEEEE-------ecCCCeEEEEeCCEEeccCC--ccceeeccCCceeeeeeEEEEEecC
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVY-------GDPEPTILWLLNGQVLHNSS--FDLLEEEEGDALFEKSVSITLFNVT 330 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~-------g~P~p~v~W~~~g~~l~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~ 330 (610)
.|.+...+..+.+.+|+.++|.|.+. |.|.+.|.|++++..+.... ..... ...+.|.|.+++
T Consensus 18 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~--------~~~~~L~i~~v~ 89 (339)
T 3o4o_C 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW--------AQDGALWLLPAL 89 (339)
T ss_dssp CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEE--------EETTEEEESSBC
T ss_pred hHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEE--------eeCCeEEECCCC
Confidence 36777888899999999999999998 99999999999988742221 11111 233589999999
Q ss_pred CCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEE-----eeec--cc
Q psy10487 331 DLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCR-----AHEH--KN 403 (610)
Q Consensus 331 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~ 403 (610)
.+|+|.|+|.|.|..|.....+.|.|.............. ..+..+.. +.+.|. ..+. +.
T Consensus 90 ~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~-~~~~~g~~------------v~l~C~~~~~~~~g~p~~~ 156 (339)
T 3o4o_C 90 QEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYP-QILTLSTS------------GVLVCPDLSEFTRDKTDVK 156 (339)
T ss_dssp TTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEE-EEEETTSC------------EEEECCSCTTTCCSSSCCC
T ss_pred cccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccc-eEEECCCC------------EEEEecCCcccccCCCCce
Confidence 9999999999999999988888888854322210000000 11111111 123333 2222 22
Q ss_pred ccccccCCcc----ccccccccccceeeeeeeeccCcceeeeecCCCc----ceeeeeeccccc
Q psy10487 404 KRRKRKGKMK----QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQP----DMELIEQSLAME 459 (610)
Q Consensus 404 ~~~~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G----~~~~~~~l~v~~ 459 (610)
..|.+.+..- .........+.|.|.+++.+|+|.|+|.|.|..| .......|.|.+
T Consensus 157 v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~ 220 (339)
T 3o4o_C 157 IQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKK 220 (339)
T ss_dssp BCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEEC
T ss_pred EEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEc
Confidence 2232221110 1111222335799999999999999999999888 345566666654
No 189
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.61 E-value=1.1e-16 Score=166.04 Aligned_cols=197 Identities=11% Similarity=0.010 Sum_probs=119.7
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|+|.+.+......+ .... +...+ ...+.+|++++|.|.+.|.|.|.+.|++++..+..
T Consensus 77 ~D~G~Y~C~~~n~~~~~~l---~V~~------~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------- 139 (363)
T 1wio_A 77 EDSDTYICEVEDQKEEVQL---LVFG------LTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------- 139 (363)
T ss_dssp GGCEEEEEEETTEEEEEEE---EEEE------EEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE-------
T ss_pred HHCEEEEEEEEECCCcEEE---EEEe------CCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc-------
Confidence 4678899988776431111 1111 12222 24678999999999999999999999998754421
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHh--
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVS-- 388 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-- 388 (610)
..+.|.|.+++.+|+|.|+|.|.|..+.....+.+.|...+..+ ....+..+..+.+.|.+.+
T Consensus 140 ---------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~------~~~~~~~G~~v~l~C~~~~~~ 204 (363)
T 1wio_A 140 ---------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS------SIVYKKEGEQVEFSFPLAFTV 204 (363)
T ss_dssp ---------ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE------EEEEEETBCCEEEECCCCCCC
T ss_pred ---------cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC------CceEEecCCEEEEEEEEeccc
Confidence 22489999999999999999999998887777777774322221 1111211222222222211
Q ss_pred ---heeEEEEEEeeecccccc-cccCCccccccc------------cccccceeeeeeeeccCcceeeeecCC--Cccee
Q psy10487 389 ---IGMSFCVCRAHEHKNKRR-KRKGKMKQSVSF------------NDQEKKLLDVSITTTDRHTGSCEALGS--QPDME 450 (610)
Q Consensus 389 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------~~~~~~L~i~~v~~~D~G~Y~C~A~N~--~G~~~ 450 (610)
.+...+.|.+.+...... .........+.. .+....|.|.+++.+|+|.|+|.|.|. .|..+
T Consensus 205 ~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~ 284 (363)
T 1wio_A 205 EKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284 (363)
T ss_dssp CSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEE
T ss_pred ccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEE
Confidence 122233333322211100 000000111111 122348999999999999999999999 99998
Q ss_pred eeeeccccc
Q psy10487 451 LIEQSLAME 459 (610)
Q Consensus 451 ~~~~l~v~~ 459 (610)
..+.|.|.+
T Consensus 285 ~~~~l~V~~ 293 (363)
T 1wio_A 285 QEVNLVVMR 293 (363)
T ss_dssp EEEEEEEEE
T ss_pred EEEeEEEEE
Confidence 888888763
No 190
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.61 E-value=9e-16 Score=144.32 Aligned_cols=175 Identities=16% Similarity=0.129 Sum_probs=109.9
Q ss_pred eecceEeecCceEEEEEE-EEecCC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487 266 KESMVIREAGGNVTMSCY-VYGDPE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~-~~g~P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 343 (610)
.+..+.+.+|+.+.|.|. +.|.|. +.+.|++++..+............ ..+.|.|.+++.+|+|.|+|.|.|
T Consensus 14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~ 87 (201)
T 3s97_C 14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ------TNGNLYIANVEASDKGNYSCFVSS 87 (201)
T ss_dssp CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECT------TTCCEEESSCCGGGCEEEEEEEEE
T ss_pred CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEc------CCCeEEECcCCcccCeEEEEEEEe
Confidence 446788999999999999 899999 999999998776532221111111 124799999999999999999999
Q ss_pred CCcceeE---EEEEEcCc----cccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee--cccccccccCCc-c
Q psy10487 344 IRGNASG---EISLDLPE----INLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE--HKNKRRKRKGKM-K 413 (610)
Q Consensus 344 ~~G~~~~---~~~L~V~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~ 413 (610)
..+.... .+.+.+.. ...+|.+........+..+.. +.+.|.... .+...|.+.... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~------------~~l~C~~~g~p~p~v~W~~~~~~~~ 155 (201)
T 3s97_C 88 PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQN------------VTLECFALGNPVPDIRWRKVLEPMP 155 (201)
T ss_dssp GGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCC------------EEEEEEEEEESCCEEEEEETTBCCC
T ss_pred cCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCc------------EEEEEEccCCCCCceEEEeCCCcCC
Confidence 8776543 23333311 112222222222222222111 123333333 333334332221 1
Q ss_pred ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 414 QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 414 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
........+..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 156 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp TTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CceeecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 111223456689999999999999999999999999888777653
No 191
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.60 E-value=1.3e-15 Score=148.78 Aligned_cols=185 Identities=14% Similarity=0.098 Sum_probs=104.7
Q ss_pred eeecceEeecCceEEEEEEEEe---cCCCeEEEEeCCEEec----cC-C--------------ccceeeccCCceee---
Q psy10487 265 IKESMVIREAGGNVTMSCYVYG---DPEPTILWLLNGQVLH----NS-S--------------FDLLEEEEGDALFE--- 319 (610)
Q Consensus 265 ~~~~~~~v~~G~~v~l~C~~~g---~P~p~v~W~~~g~~l~----~~-~--------------~~~~~~~~~~~~~~--- 319 (610)
..+..+.+.+|++++|.|.+.| .|.|.|.|++++.... .. . ..........+...
T Consensus 7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 86 (250)
T 2fbo_J 7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN 86 (250)
T ss_dssp CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence 3456788999999999999998 8999999999874320 00 0 00000000000000
Q ss_pred -eeeEEEEEecCCCCCeEEEEEeecCCcce-----eEEEEEEcCcccccccccc-CCcceeehhhhHHHHHHHHHhheeE
Q psy10487 320 -KSVSITLFNVTDLDAGEYTCYAENIRGNA-----SGEISLDLPEINLATTLSK-TDSWYMLVLGISVCVVSVIVSIGMS 392 (610)
Q Consensus 320 -~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-----~~~~~L~V~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (610)
....|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|.....++.+.. .+....+..+..+.+.|.+.+.+..
T Consensus 87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p 166 (250)
T 2fbo_J 87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA 166 (250)
T ss_dssp TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC
T ss_pred CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC
Confidence 12489999999999999999999988753 5688888865432333222 2222222223333333333332222
Q ss_pred EEEEEeeecccccccccC------------Cc--ccc--ccc-cccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487 393 FCVCRAHEHKNKRRKRKG------------KM--KQS--VSF-NDQEKKLLDVSITTTDRHTGSCEALGSQPDME 450 (610)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~------------~~--~~~--~~~-~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 450 (610)
.+.|.+...... +.... .. ... ... ......|.|.+++.+|+|.|+|.|.|..|...
T Consensus 167 ~v~W~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g 240 (250)
T 2fbo_J 167 NVTWYTGPTFFE-NYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELD 240 (250)
T ss_dssp EEEEEEEEECSS-CSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGG
T ss_pred eeEEEeCCCccc-ccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccC
Confidence 333433332211 00000 00 000 000 01336899999999999999999999666443
No 192
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.60 E-value=7.2e-15 Score=141.55 Aligned_cols=174 Identities=12% Similarity=0.145 Sum_probs=99.1
Q ss_pred cceEeecCceEEEEEEEEecCCC---eEEEEeCCEEe-----------ccCCc----cceeeccCCceeeeeeEEEEEec
Q psy10487 268 SMVIREAGGNVTMSCYVYGDPEP---TILWLLNGQVL-----------HNSSF----DLLEEEEGDALFEKSVSITLFNV 329 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~~g~~l-----------~~~~~----~~~~~~~~~~~~~~~~~L~I~~v 329 (610)
..+.+.+|++++|.|.+.+.|.+ .|.|+|++... ..... .+..... .........|+|.++
T Consensus 12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~-~~~~~~~~~L~I~~v 90 (226)
T 4f80_A 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR-DGITAGKAALRIHNV 90 (226)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEEC-TTGGGTEEEEEESSC
T ss_pred CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEec-ccccCCeEEEEEeeC
Confidence 45788999999999999987765 69999976321 11000 0000000 000112458999999
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEee---ecccccc
Q psy10487 330 TDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAH---EHKNKRR 406 (610)
Q Consensus 330 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 406 (610)
+.+|+|.|+|.|.|..|.....+.+.+......+ ........+.. +.+.|... +.+...|
T Consensus 91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~g~~------------v~l~c~~~g~~P~p~i~W 153 (226)
T 4f80_A 91 TASDSGKYLCYFQDGDFYEKALVELKVAALGSDL-----HVDVKGYKDGG------------IHLECRSTGWYPQPQIQW 153 (226)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCC-----EEEEEEEETTE------------EEEEEEEEEEBSCCEEEE
T ss_pred chHHCeeEEEEEECCCcEEEEEEEEeeccceecc-----cceeeeccCCc------------eeeEEEeccCCCCCEEEE
Confidence 9999999999999999988887777663221111 11111111111 12333333 3334444
Q ss_pred cccCCcc---c-cccccccccc---eeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 407 KRKGKMK---Q-SVSFNDQEKK---LLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 407 ~~~~~~~---~-~~~~~~~~~~---L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
.+..... . .....+.++. +.+.+++.+|+|.|+|.|.|..|..+..+.+.|.+
T Consensus 154 ~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 154 SNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp ECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred EECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence 3321110 0 0111123332 33456788899999999999999999998888765
No 193
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.60 E-value=6.2e-17 Score=184.98 Aligned_cols=222 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceee
Q psy10487 232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311 (610)
Q Consensus 232 ~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~ 311 (610)
+.+.|.|.+.+..+.... .+... +..+|.+...+. ..+.+|+.+.|.|.+.|.|.|.+.|++++..+..........
T Consensus 524 d~G~Y~C~a~N~~g~~~~-~~~l~-V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~ 600 (772)
T 3v2a_R 524 VSALYKCEAVNKVGRGER-VISFH-VTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT 600 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCeEEEEEEEccccccce-eEEEE-EECCceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccc
Confidence 457899999887653321 11111 123566655544 457789999999999999999999999987664332211100
Q ss_pred -----------ccCC---ceeeeeeEEEEEecCCCCCeEEEEEeecCCccee--EEEEEEcCccccccccccCCcceeeh
Q psy10487 312 -----------EEGD---ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS--GEISLDLPEINLATTLSKTDSWYMLV 375 (610)
Q Consensus 312 -----------~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~--~~~~L~V~~~~~~p~~~~~~~~~~~~ 375 (610)
.... ........|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.. ..+|.+...+....+.
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~-~~~P~~~~~~~~~~v~ 679 (772)
T 3v2a_R 601 PVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE-RVAPTITGNLENQTTS 679 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccc-cCCCEeecCCCceEEe
Confidence 0000 0001123599999999999999999999765433 344555531 3345555555544455
Q ss_pred hhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487 376 LGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS 455 (610)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 455 (610)
.+..+.+.|.+.+.+...+.|.+.+..-. ....+.....++.|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 680 ~g~~~~l~C~~~g~P~p~v~W~k~g~~l~-------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 752 (772)
T 3v2a_R 680 IGESIEVSCTASGNPPPQIMWFKDNETLV-------EDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCEEEEEEeCccCCCeEEEEECCeECc-------CCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEE
Confidence 55556666666655544444444332211 11122233446789999999999999999999999999999999
Q ss_pred ccccCCCcc
Q psy10487 456 LAMEQPPVH 464 (610)
Q Consensus 456 ~v~~~pp~~ 464 (610)
.|.++|...
T Consensus 753 ~V~~~p~~~ 761 (772)
T 3v2a_R 753 IIEGAQEKT 761 (772)
T ss_dssp ---------
T ss_pred EEECCCCcc
Confidence 998765443
No 194
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.60 E-value=8.6e-16 Score=142.77 Aligned_cols=158 Identities=15% Similarity=0.227 Sum_probs=100.4
Q ss_pred eEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487 270 VIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN 347 (610)
Q Consensus 270 ~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 347 (610)
..+.+|+.++|.|.+.|.|.| .+.|++++..+...... .....|.|. +.+|+|.|+|.|.|.
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----------~~~~~l~i~--~~~d~G~Y~C~~~n~--- 71 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----------GQKTEFKVD--SDDQWGEYSCVFLPE--- 71 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----------CSEEEEEEC--GGGCCEEEEEEEEST---
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----------CCcEEEEEe--chhhCeEEEEEEECC---
Confidence 466889999999999998888 89999999888655421 112356665 689999999999983
Q ss_pred eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc---cccccccCCcc---------cc
Q psy10487 348 ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK---NKRRKRKGKMK---------QS 415 (610)
Q Consensus 348 ~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~ 415 (610)
....+.|.|.. +|.+...+....+..+..+ .+.|.....+ ...|.+..... ..
T Consensus 72 ~~~~~~l~V~~---~P~~~~~~~~~~~~~g~~~------------~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~ 136 (184)
T 3b5h_A 72 PMGTANIQLHG---PPRVKAVKSSEHINEGETA------------MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESR 136 (184)
T ss_dssp TSCEEEEEECC---SCCCEESCSEEEECTTSCE------------EEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGT
T ss_pred cCcEEEEEEec---CCceeecCCCcEEcCCCcE------------EEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCE
Confidence 33566777632 3344333333323222222 2233333222 12222200011 11
Q ss_pred cccc--ccccceeeeeee-eccCcceeeeecCCCcceeeeeecccc
Q psy10487 416 VSFN--DQEKKLLDVSIT-TTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 416 ~~~~--~~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
.... .....|.|.+++ .+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 137 ~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 137 FFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp EEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence 1111 223479999999 899999999999999999888877765
No 195
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.59 E-value=1.6e-16 Score=166.88 Aligned_cols=209 Identities=16% Similarity=0.198 Sum_probs=125.2
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCce-eeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNV-TIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i-~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~ 308 (610)
.+.+.|+|.+.+..+......+..... .+|.+ ........+.+|+.++|.|.+ .|.|.+.+.|++++..........
T Consensus 87 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~-~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~ 165 (404)
T 3p3y_A 87 EYEGEYQCFARNKFGTALSNRIRLQVS-KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRV 165 (404)
T ss_dssp SSCEEEEEEEECSSCEEEEEEEEEEEC-CCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSE
T ss_pred cCCEEEEEEEEcCCCeEeeeeEEEEEe-ccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcE
Confidence 467889999877654432223333222 33333 233455788999999999999 899999999999875443322211
Q ss_pred eeeccCCceeeeeeEEEEEecCCCC-CeEEEEEeecCCcceeE---EEEEEcCcc----ccccccccCC---cceeehhh
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLD-AGEYTCYAENIRGNASG---EISLDLPEI----NLATTLSKTD---SWYMLVLG 377 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~N~~G~~~~---~~~L~V~~~----~~~p~~~~~~---~~~~~~~~ 377 (610)
.. ...+.|.|.+++.+| +|.|+|.|.|..|.... .+.+.|... ..+|.+.... ....+..+
T Consensus 166 ~~--------~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G 237 (404)
T 3p3y_A 166 SQ--------GHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRG 237 (404)
T ss_dssp EE--------CTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETT
T ss_pred EE--------cCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecC
Confidence 11 122479999999999 59999999999886422 244444211 1122222211 11112222
Q ss_pred hHHHHHHHHHhheeEEEEEEeeecc--cccccccCCc--cccccccccccceeeeeeeeccCcceeeeecCCCcceeeee
Q psy10487 378 ISVCVVSVIVSIGMSFCVCRAHEHK--NKRRKRKGKM--KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIE 453 (610)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 453 (610)
..+ .+.|...+.+ ...|.+.+.. .........++.|.|.+++.+|+|.|+|.|.|..|..+...
T Consensus 238 ~~v------------~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 305 (404)
T 3p3y_A 238 MDL------------LLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTI 305 (404)
T ss_dssp SCE------------EEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred CCE------------EEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEE
Confidence 221 2223222222 1122221111 11112234466899999999999999999999999999888
Q ss_pred ecccccC
Q psy10487 454 QSLAMEQ 460 (610)
Q Consensus 454 ~l~v~~~ 460 (610)
.+.|..+
T Consensus 306 ~l~V~~~ 312 (404)
T 3p3y_A 306 SVRVKAA 312 (404)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 8887764
No 196
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.59 E-value=3.4e-15 Score=164.87 Aligned_cols=165 Identities=21% Similarity=0.251 Sum_probs=133.3
Q ss_pred CCCCCCeeCccCCCcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc
Q psy10487 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102 (610)
Q Consensus 23 ~Cp~~C~C~~~~~~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~ 102 (610)
.||..|.|... +...++|.+++++++|..++.+|+.|+|++|.|+.++. .+++|++|+|++|.|+.++.
T Consensus 30 ~~~~~~~c~~~-~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~---- 98 (622)
T 3g06_A 30 VVQKMRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV---- 98 (622)
T ss_dssp HHHHHHHHHHH-CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----
T ss_pred cCcccccccCC-CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----
Confidence 57778888764 35789999999999999999999999999999998886 36799999999999998875
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccc
Q psy10487 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL 182 (610)
Q Consensus 103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 182 (610)
.+++|++|+|++|+|..++. .+.+|+.|+|++|.++.++.. +++|+.|+|++|+|+.++. .+.+|+.|
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L 166 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKL 166 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEE
Confidence 67899999999999998875 568899999999998887652 4788899999988887742 34567777
Q ss_pred ccccccccccCcccccCCCcccEEecCCCccc
Q psy10487 183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 183 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~ 214 (610)
++++|.|+.++ ..+++|+.|++++|.+.
T Consensus 167 ~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 167 WAYNNQLTSLP----MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp ECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ECCCCCCCCCc----ccCCCCcEEECCCCCCC
Confidence 77777777665 23456677777776654
No 197
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=7.9e-16 Score=155.82 Aligned_cols=179 Identities=21% Similarity=0.274 Sum_probs=141.4
Q ss_pred cEEEcCCCCCCccCc--cc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcc-cchhhhcCCCCCcEEE
Q psy10487 37 KSALCKDANFTALPS--TL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIRE-VHRDTFKYLTILVEVD 111 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~--~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~-i~~~~f~~l~~L~~Ld 111 (610)
+.++..+++++.++. .+ ..+|++|+|++|.+..+.+..|. ++++|++|+|++|.+.. ..+..|..+++|++|+
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc--cCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 455666666666553 22 24778888888888777777776 68889999999998876 5567889999999999
Q ss_pred ccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcC-cccccccccccccc
Q psy10487 112 LSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL-TALESLNLNGNRLK 190 (610)
Q Consensus 112 Ls~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~ 190 (610)
|++|++..+.+..|..+++|+.|+|++|.++.+....|..+++|+.|+|++|++..+.+..+..+ .+|+.|+|++|.+.
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 99999999988899999999999999999999988889999999999999999999888888888 49999999999997
Q ss_pred ccCcc--cccCCCcccEEecCCCcccccC
Q psy10487 191 HLSES--VFFPTPNLKTLSLDGNPWCCDC 217 (610)
Q Consensus 191 ~~~~~--~~~~~~~L~~l~l~~N~~~c~c 217 (610)
..... ....+...+.+.+..+.+.|.-
T Consensus 262 ~~c~~~~~~~~l~~~~~~~~~~~~~~C~~ 290 (306)
T 2z66_A 262 CTCEHQSFLQWIKDQRQLLVEVERMECAT 290 (306)
T ss_dssp CSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred cccChHHHHHHHHhhhhhhccccccccCC
Confidence 65431 1112333444556667777753
No 198
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.58 E-value=9.8e-15 Score=150.44 Aligned_cols=163 Identities=26% Similarity=0.322 Sum_probs=133.4
Q ss_pred cEEEcCCC-CCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDA-NFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~-~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
+.++..++ .+..++ .+ ..+|++|++++|.+..+.. +. .+++|+.|++++|.+..+.+ +..+++|+.|+++
T Consensus 135 ~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 135 YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IA--NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207 (347)
T ss_dssp CEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred eEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hc--cCCCCCEEEccCCccccccc--ccCCCccceeecc
Confidence 56777766 333443 23 3589999999999888775 54 68899999999999988865 7889999999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 193 (610)
+|++..+.+ +..+++|+.|+|++|.++.+.. +..+++|+.|++++|.+..+ ..+..+++|+.|++++|.++.++
T Consensus 208 ~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~ 281 (347)
T 4fmz_A 208 VNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS 281 (347)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG
T ss_pred cCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh
Confidence 999988765 7888999999999999988876 78889999999999999887 35788889999999999998873
Q ss_pred cccccCCCcccEEecCCCccc
Q psy10487 194 ESVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 194 ~~~~~~~~~L~~l~l~~N~~~ 214 (610)
.+..+++|+.|++++|.+.
T Consensus 282 --~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 282 --VLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp --GGGGCTTCSEEECCSSCCC
T ss_pred --hhcCCCCCCEEECcCCcCC
Confidence 4777889999999998864
No 199
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=151.70 Aligned_cols=157 Identities=17% Similarity=0.072 Sum_probs=122.8
Q ss_pred CccEEEeecCCCCCCChhhh--cccCCCCccEEEcccCCCcccc----hhhhcCCCCCcEEEccCCCCCCCCcccccCCC
Q psy10487 56 DIQVLDLNNNKISYLTKEAF--KSIGLLNLQRIYLKNSGIREVH----RDTFKYLTILVEVDLSDNQIAWLHQDTFLGND 129 (610)
Q Consensus 56 ~L~~L~L~~n~i~~l~~~~~--~~~~l~~L~~L~L~~n~l~~i~----~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~ 129 (610)
+|++|+|++|.+....+..+ . .+.+|++|+|++|.+.... ...+..+++|++|+|++|+|..+.+..|.+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEA--TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSC--CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred ceeEEEeeCCEeccchhhhhhhc--cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 48889999999887766665 4 6888999999999888632 24456788999999999999888888888999
Q ss_pred CCcEEEeeCccccc---cCc-CcCCCCCCccEEEccCccccccCHH---HhhcCccccccccccccccccCcccccCC--
Q psy10487 130 RLKVLYLNGNPITE---LRA-GQFPKLPYLKTIELQHCQIHSVHKD---ALIHLTALESLNLNGNRLKHLSESVFFPT-- 200 (610)
Q Consensus 130 ~L~~L~Ls~N~l~~---l~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-- 200 (610)
+|++|+|++|.+.. +.. ..+..+++|+.|+|++|+|+.+... .+..+.+|+.|+|++|++....+..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999998764 322 3346788899999999998766432 35677899999999999988754444444
Q ss_pred -CcccEEecCCCccc
Q psy10487 201 -PNLKTLSLDGNPWC 214 (610)
Q Consensus 201 -~~L~~l~l~~N~~~ 214 (610)
++|+.|++++|.+.
T Consensus 250 ~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 250 SSALNSLNLSFAGLE 264 (310)
T ss_dssp CTTCCCEECCSSCCC
T ss_pred cCcCCEEECCCCCCC
Confidence 68899999998876
No 200
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.58 E-value=9.6e-15 Score=163.05 Aligned_cols=174 Identities=20% Similarity=0.307 Sum_probs=140.8
Q ss_pred cEEEcCCCCCCccCcccC--CC-ccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc-------CCCC
Q psy10487 37 KSALCKDANFTALPSTLD--SD-IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK-------YLTI 106 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l~--~~-L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~-------~l~~ 106 (610)
+.++..+++++.+|..+. .+ |++|+|++|.|+.++. .+....+.+|+.|+|++|.+....+..|. .+.+
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 567888888888887663 35 9999999999997775 44433455899999999999888777777 7789
Q ss_pred CcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCC-------CccEEEccCccccccCHHHh-hcCcc
Q psy10487 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLP-------YLKTIELQHCQIHSVHKDAL-IHLTA 178 (610)
Q Consensus 107 L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~-~~l~~ 178 (610)
|++|+|++|+|..++...|..+++|++|+|++|.++.++...+..+. +|+.|+|++|+|+.++...+ ..+++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence 99999999999998888888889999999999999988776665443 89999999999997754332 38899
Q ss_pred ccccccccccccccCcccccCCCcccEEecCCCc
Q psy10487 179 LESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212 (610)
Q Consensus 179 L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~ 212 (610)
|+.|+|++|++++++. .+..+++|+.|++++|+
T Consensus 515 L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 515 LVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp CCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCB
T ss_pred cCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCc
Confidence 9999999999998655 45578999999996654
No 201
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.57 E-value=2.7e-15 Score=140.18 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=93.6
Q ss_pred EeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEe-cCCCCCeEEEEEeecCCccee
Q psy10487 271 IREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFN-VTDLDAGEYTCYAENIRGNAS 349 (610)
Q Consensus 271 ~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~ 349 (610)
.+.+|++++|.|.+.| |. .|.|+|+|..+.... .+.|.|.+ ++.+|+|.|+|.|.|..|...
T Consensus 10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~---------------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~ 72 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKH---------------DKHLVLQDFSEVEDSGYYVCYTPASNKNTY 72 (186)
T ss_dssp EEEETTEEEEECSSCC-CT-TCEEEETTEEECSCC---------------CSEEEEESCCTTTSCEEEEEECSSCCCCCC
T ss_pred EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCC---------------CCEEEECCCCccccCEEEEEEEEeCCCcEE
Confidence 3467999999999988 54 499999999886532 12799999 999999999999999999877
Q ss_pred EEEEEEcCccccccc---------------cccCCc----cee---ehhhhHHHHHHHHHhheeEEEEEEeeeccccccc
Q psy10487 350 GEISLDLPEINLATT---------------LSKTDS----WYM---LVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRK 407 (610)
Q Consensus 350 ~~~~L~V~~~~~~p~---------------~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (610)
..+.+.|.....+.. +..... ... +..+.. +.+.|.. +.+...|.
T Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------------v~l~C~~-p~p~i~W~ 139 (186)
T 1jbj_A 73 LYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGS------------VLLTCGL-TDKTIKWL 139 (186)
T ss_dssp EEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCE------------EEEECSS-SCSCEEEE
T ss_pred EEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCe------------EEEEeeC-CCCeEEEE
Confidence 776666643222110 000000 000 001111 1223332 22333333
Q ss_pred ccCCcccccc-ccccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487 408 RKGKMKQSVS-FNDQEKKLLDVSITTTDRHTGSCEALGSQPDM 449 (610)
Q Consensus 408 ~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 449 (610)
+.+ ..+. .......|.|.+++.+|+|.|+|.|.|..|+.
T Consensus 140 k~g---~~i~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 140 KDG---SIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp ETT---EECCCSSCCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred ECC---EECcccCCCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 222 2111 11256689999999999999999999999975
No 202
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=9.5e-16 Score=165.48 Aligned_cols=177 Identities=20% Similarity=0.189 Sum_probs=149.2
Q ss_pred CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhc-CCCCCcEEEccC
Q psy10487 36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK-YLTILVEVDLSD 114 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~-~l~~L~~LdLs~ 114 (610)
-..++..++.++.++.....+|+.|+|++|.|+.+.+..|. ++++|+.|+|++|.|..+.+..|. .+++|++|+|++
T Consensus 101 L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 36788999999988876667899999999999999888887 689999999999999998888776 799999999999
Q ss_pred CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccc-ccC
Q psy10487 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK-HLS 193 (610)
Q Consensus 115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 193 (610)
|.|..++. +..+++|+.|+|++|.++.+++. |..+++|+.|+|++|.|..++ ..+..+++|+.|++++|.+. ...
T Consensus 179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp SCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCBCHHHH
T ss_pred Cccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc-hhhccCCCCCEEEcCCCCCcCcch
Confidence 99998854 44689999999999999998775 888999999999999999885 45788899999999999987 333
Q ss_pred cccccCCCcccEEecC-------CCcccccCC
Q psy10487 194 ESVFFPTPNLKTLSLD-------GNPWCCDCH 218 (610)
Q Consensus 194 ~~~~~~~~~L~~l~l~-------~N~~~c~c~ 218 (610)
+..+..++.|+.+++. .|++.|.|.
T Consensus 255 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred HHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 4456667777766664 555555553
No 203
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=7.2e-16 Score=157.03 Aligned_cols=169 Identities=20% Similarity=0.185 Sum_probs=146.2
Q ss_pred CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhh-cCCCCCcEEEccC
Q psy10487 36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF-KYLTILVEVDLSD 114 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f-~~l~~L~~LdLs~ 114 (610)
-+.++..+++++.++.....+|++|+|++|.|+.+.+..|. ++++|++|+|++|.+..+.+..| ..+++|++|+|++
T Consensus 101 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 36788899999988877778899999999999999888887 68999999999999999887777 4789999999999
Q ss_pred CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccc-ccC
Q psy10487 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK-HLS 193 (610)
Q Consensus 115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 193 (610)
|+|..++. ...+++|++|+|++|.++.+++. |..+++|+.|+|++|+|+.++ ..+..+++|+.|++++|.+. ...
T Consensus 179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp SCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCCBHHHH
T ss_pred CcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh-hHhhcCCCCCEEEccCCCccCcCH
Confidence 99998854 34589999999999999998775 888999999999999999885 45788899999999999998 555
Q ss_pred cccccCCCcccEEecCC
Q psy10487 194 ESVFFPTPNLKTLSLDG 210 (610)
Q Consensus 194 ~~~~~~~~~L~~l~l~~ 210 (610)
+..+..+++|+.+++.+
T Consensus 255 ~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhccccceEEECCC
Confidence 55677777888777663
No 204
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.57 E-value=1.8e-16 Score=162.13 Aligned_cols=172 Identities=16% Similarity=0.243 Sum_probs=45.5
Q ss_pred eecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487 266 KESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI 344 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 344 (610)
.+..+.+.+|+.++|.|.+.|. |.|.+.|+++|..+....+.. ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~----------~~~~~L~i~~v~~~D~G~Y~C~a~n~ 83 (334)
T 1ry7_B 14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVL----------VGPQRLQVLNASHEDSGAYSCRQRLT 83 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEE----------eccceEEEeecccccCEEEEEEEEeC
Confidence 4778889999999999999987 689999999998876543211 12358999999999999999999999
Q ss_pred CcceeEEEEEEcCcccc-------------------ccccccCCc----ceeehhhhHHHHHHHHHhheeEEEEEEeeec
Q psy10487 345 RGNASGEISLDLPEINL-------------------ATTLSKTDS----WYMLVLGISVCVVSVIVSIGMSFCVCRAHEH 401 (610)
Q Consensus 345 ~G~~~~~~~L~V~~~~~-------------------~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (610)
|.....+.|.|..... +|.+..... ...+..+.. +.+.|...+.
T Consensus 84 -~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~------------v~l~C~~~g~ 150 (334)
T 1ry7_B 84 -QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANT------------VRFRCPAAGN 150 (334)
T ss_dssp ------------------------------------CCCCSCCTTCCCCEEEEETTCC------------EEEECCCCCS
T ss_pred -CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCc------------EEEEEEccCC
Confidence 8888888888754321 222221111 111111111 1223332222
Q ss_pred c--cccccccCCcc------ccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487 402 K--NKRRKRKGKMK------QSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ 460 (610)
Q Consensus 402 ~--~~~~~~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~ 460 (610)
+ ...|.+.+..- ...........|.|.+++.+|+|.|+|.|.|..|..+....+.|...
T Consensus 151 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 217 (334)
T 1ry7_B 151 PTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER 217 (334)
T ss_dssp SCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecC
Confidence 2 22232211110 01112234558999999999999999999999999888888887764
No 205
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.4e-14 Score=163.57 Aligned_cols=176 Identities=17% Similarity=0.241 Sum_probs=99.2
Q ss_pred cEEEcCCCCCCccCcccCC----CccEEEeecCCCCCCChhh---hcccCCCCccEEEcccCCCcccchhhhcCCCCCcE
Q psy10487 37 KSALCKDANFTALPSTLDS----DIQVLDLNNNKISYLTKEA---FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVE 109 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l~~----~L~~L~L~~n~i~~l~~~~---~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~ 109 (610)
+.++..+++++.+|..+.. +|+.|+|++|.|....+.. +....+.+|+.|+|++|.+..++...|..+++|++
T Consensus 622 ~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701 (876)
T ss_dssp CEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred CEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence 4566667777777654421 2666666666665433221 11112345666666666666665555556666666
Q ss_pred EEccCCCCCCCCcccccCCC-------CCcEEEeeCccccccCcCcC-CCCCCccEEEccCccccccCHHHhhcCccccc
Q psy10487 110 VDLSDNQIAWLHQDTFLGND-------RLKVLYLNGNPITELRAGQF-PKLPYLKTIELQHCQIHSVHKDALIHLTALES 181 (610)
Q Consensus 110 LdLs~n~l~~l~~~~f~~l~-------~L~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (610)
|+|++|+|..++...|.... +|+.|+|++|.++.++...+ ..+++|+.|+|++|+|..+ +..+..+++|+.
T Consensus 702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~ 780 (876)
T 4ecn_A 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKA 780 (876)
T ss_dssp EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCE
T ss_pred EECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCE
Confidence 66666666665555444332 66666666666665543322 2566666666666666664 334555666666
Q ss_pred ccccc------ccccccCcccccCCCcccEEecCCCcc
Q psy10487 182 LNLNG------NRLKHLSESVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 182 L~L~~------n~l~~~~~~~~~~~~~L~~l~l~~N~~ 213 (610)
|+|++ |.+....+..+..+++|+.|++++|.+
T Consensus 781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 66644 444444444555566666666666655
No 206
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.55 E-value=2.5e-14 Score=153.75 Aligned_cols=167 Identities=23% Similarity=0.309 Sum_probs=139.8
Q ss_pred CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487 36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~ 114 (610)
-+.++..+++++.++. ....+|+.|+|++|.++.++ .+. .+++|++|++++|.+..+.+ |..+++|++|++++
T Consensus 201 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274 (466)
T ss_dssp CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred CCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhh--cCCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence 3678888888877653 34568999999999998874 455 68899999999999988865 88899999999999
Q ss_pred CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194 (610)
Q Consensus 115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 194 (610)
|++..+++ +..+++|+.|+|++|.++.+.+ +..+++|+.|+|++|++..+.+ +..+++|+.|++++|.++++.
T Consensus 275 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~- 347 (466)
T 1o6v_A 275 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS- 347 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-
T ss_pred CccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-
Confidence 99998765 8889999999999999988766 7788999999999999988865 678899999999999998873
Q ss_pred ccccCCCcccEEecCCCccccc
Q psy10487 195 SVFFPTPNLKTLSLDGNPWCCD 216 (610)
Q Consensus 195 ~~~~~~~~L~~l~l~~N~~~c~ 216 (610)
.+..+++|+.|++++|.+...
T Consensus 348 -~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 348 -SLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp -GGTTCTTCCEEECCSSCCCBC
T ss_pred -hhccCCCCCEEeCCCCccCcc
Confidence 577888999999999887644
No 207
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.55 E-value=1.1e-14 Score=142.83 Aligned_cols=201 Identities=16% Similarity=0.117 Sum_probs=101.6
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecC-----CCeEEEEeC--CEEec-
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLLN--GQVLH- 302 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-----~p~v~W~~~--g~~l~- 302 (610)
-+.+.|+|.+. |.......... ..++.+...+..+.+.+|++++|.|.+.|.| .|.|.|+|+ +..+.
T Consensus 14 ~dsg~Y~C~a~----g~~~~~~~~~~-~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~ 88 (254)
T 2c1o_A 14 GTSVKLSCKAS----GYSFTNYWMNW-LRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKR 88 (254)
T ss_dssp -----------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEE
T ss_pred CccEEEEEcCc----hhhhhhhhhhe-eeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceE
Confidence 46788999987 22222221111 2267777778889999999999999999988 489999984 32211
Q ss_pred --cCCccceeeccCCceee---eeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehh
Q psy10487 303 --NSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVL 376 (610)
Q Consensus 303 --~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~ 376 (610)
...........++.... ....|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|.....+|.+.........
T Consensus 89 ~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~-- 166 (254)
T 2c1o_A 89 LIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQ-- 166 (254)
T ss_dssp EEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHH--
T ss_pred EEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhh--
Confidence 00000000000110111 12489999999999999999999987653 22345666443333443322111000
Q ss_pred hhHHHHHHHHHhheeEEEEEEeeec-cc---ccccccCCcc-cc------cccc-----ccccceeeeeeeeccCcceee
Q psy10487 377 GISVCVVSVIVSIGMSFCVCRAHEH-KN---KRRKRKGKMK-QS------VSFN-----DQEKKLLDVSITTTDRHTGSC 440 (610)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~-~~------~~~~-----~~~~~L~i~~v~~~D~G~Y~C 440 (610)
+.+. .+...|...+. +. ..|.+.+..- .. .... .....|.|.++..+|+|.|+|
T Consensus 167 ---------~~g~-~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C 236 (254)
T 2c1o_A 167 ---------LTSG-GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTC 236 (254)
T ss_dssp ---------HHTT-EEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEE
T ss_pred ---------ccCC-cEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEE
Confidence 0111 12344444332 21 2343332210 00 0000 013468999999999999999
Q ss_pred eecCCCcc
Q psy10487 441 EALGSQPD 448 (610)
Q Consensus 441 ~A~N~~G~ 448 (610)
.|.|....
T Consensus 237 ~a~n~~~~ 244 (254)
T 2c1o_A 237 EATHKTST 244 (254)
T ss_dssp EEECTTCS
T ss_pred EEEcCCCC
Confidence 99998765
No 208
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.55 E-value=2.4e-14 Score=137.12 Aligned_cols=179 Identities=14% Similarity=0.147 Sum_probs=103.1
Q ss_pred eecceEeecCceEEEEEEEEecCC-----CeEEEEeCCEEeccCCccceee----c--cCCcee------eeeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDPE-----PTILWLLNGQVLHNSSFDLLEE----E--EGDALF------EKSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P~-----p~v~W~~~g~~l~~~~~~~~~~----~--~~~~~~------~~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.|. +.+.|++++..+.......... . .++... .....|.|.+
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 86 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD 86 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence 345667889999999999988884 4899999875442211100000 0 011000 1235899999
Q ss_pred cCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccccc
Q psy10487 329 VTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNKRR 406 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 406 (610)
++.+|+|.|+|.|.| .|.....+.|.|......+.... ......+. .+.+.|...+. +...|
T Consensus 87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~---~~~~~~g~------------~v~L~C~~~g~P~p~i~W 150 (222)
T 3sbw_C 87 VKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRI---LVVDPVTS------------EHELTCQAEGYPKAEVIW 150 (222)
T ss_dssp CCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEE---EEEETTTT------------EEEEEEEEEEBSCCEEEE
T ss_pred cccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCcee---eeeecCCC------------cEEEEEEecCCCCCeEEE
Confidence 999999999999999 67777788888853322211110 00111111 11334443333 33334
Q ss_pred ccc-CCcccc---c-cccccccceee---eeeeeccCcceeeeecCCCcceeeeeecccccC
Q psy10487 407 KRK-GKMKQS---V-SFNDQEKKLLD---VSITTTDRHTGSCEALGSQPDMELIEQSLAMEQ 460 (610)
Q Consensus 407 ~~~-~~~~~~---~-~~~~~~~~L~i---~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~ 460 (610)
.+. +..-.. . .....++.+.+ ..+..+|.|.|+|.|.|..|..+..+.+.+.+.
T Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~ 212 (222)
T 3sbw_C 151 TSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL 212 (222)
T ss_dssp EETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC
T ss_pred EECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCC
Confidence 332 111000 0 11122232332 356678999999999999999999999888754
No 209
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.55 E-value=4.3e-14 Score=151.89 Aligned_cols=164 Identities=24% Similarity=0.368 Sum_probs=116.5
Q ss_pred CcEEEcCCCCCCccCc-ccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487 36 KKSALCKDANFTALPS-TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~-~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~ 114 (610)
-+.+++.+.+++.+|. ....+|++|+|++|.|+.+++ +. ++.+|++|++++|.+..+.+ |..+++|++|+|++
T Consensus 48 l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 48 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred ccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hh--ccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 4678899999988884 234689999999999999876 65 78999999999999998876 89999999999999
Q ss_pred CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCC---------------------ccEEEccCccccccCHHHh
Q psy10487 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY---------------------LKTIELQHCQIHSVHKDAL 173 (610)
Q Consensus 115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~---------------------L~~L~L~~n~l~~~~~~~~ 173 (610)
|++..+++ |..+++|++|+|++|.+..+.. +..+++ |+.|++++|.+..+. .+
T Consensus 122 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l 195 (466)
T 1o6v_A 122 NQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--VL 195 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG--GG
T ss_pred CCCCCChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh--hh
Confidence 99998865 8899999999999998887643 444444 444555555444442 23
Q ss_pred hcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487 174 IHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 174 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~ 213 (610)
..+++|+.|++++|.+..+.+ +..+++|+.|++++|.+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc
Confidence 444455555555554444433 33344445555544443
No 210
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.4e-14 Score=159.85 Aligned_cols=148 Identities=24% Similarity=0.341 Sum_probs=134.2
Q ss_pred CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcE
Q psy10487 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV 133 (610)
Q Consensus 54 ~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~ 133 (610)
..+|+.|+|++|.|..++ .|. .+++|+.|+|++|.|..+.+ |..+++|+.|+|++|+|..++ .|..+++|+.
T Consensus 42 L~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ--GIQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT--TGG--GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCE
T ss_pred CCCCCEEECcCCCCCCCh--HHc--cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCE
Confidence 458999999999999986 355 68999999999999999876 899999999999999999876 5899999999
Q ss_pred EEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCcccccCCCcccEEecCCCcc
Q psy10487 134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 134 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~ 213 (610)
|+|++|.+..+. .+..+++|+.|+|++|+|..+ ..+..+++|+.|+|++|.|..+.+ +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 999999999874 488899999999999999988 568899999999999999998877 78899999999999987
Q ss_pred cc
Q psy10487 214 CC 215 (610)
Q Consensus 214 ~c 215 (610)
..
T Consensus 188 ~~ 189 (605)
T 1m9s_A 188 SD 189 (605)
T ss_dssp CB
T ss_pred CC
Confidence 64
No 211
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.55 E-value=4.8e-15 Score=155.14 Aligned_cols=183 Identities=15% Similarity=0.186 Sum_probs=112.5
Q ss_pred cCCCceeeeecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487 258 ACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336 (610)
Q Consensus 258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 336 (610)
..+|.+...+..+.+.+|+.++|.|.+.| .|.+.+.|+|+|..+.......... . ..+.|.|.+++.+|+|.
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~-~------~~~~L~i~~~~~~D~G~ 76 (395)
T 1bih_A 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-K------DEGSLVFLRPQASDEGH 76 (395)
T ss_dssp -CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC-T------TSCCEEESSCCGGGCEE
T ss_pred CCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEe-c------CCceEEEecCCCCCCcE
Confidence 35788888899999999999999999999 8999999999998887654311111 1 22489999999999999
Q ss_pred EEEEeecCCccee-EEEEEEcCccccccccccCCcceeehhhhHHHHHHHH-HhheeEEEEEEeeec-ccccccccCCcc
Q psy10487 337 YTCYAENIRGNAS-GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI-VSIGMSFCVCRAHEH-KNKRRKRKGKMK 413 (610)
Q Consensus 337 Y~C~a~N~~G~~~-~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 413 (610)
|+|.|.|..|... ..+.|.|..... |.+. +....+..+..+.+.|.+ .+.+...+.|.+... .... ......
T Consensus 77 Y~C~a~n~~g~~~s~~~~l~v~~~~~-p~~~--~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~-~~~~~~- 151 (395)
T 1bih_A 77 YQCFAETPAGVASSRVISFRKTYLIA-SPAK--THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPN-ADVTDF- 151 (395)
T ss_dssp EEEEEEETTEEEECCCEEEEEEEEEC-CCCE--EEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGG-GCCCCC-
T ss_pred EEEEEEeCCCeEEeEEEEEEEEEeec-CCcC--CcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcc-cccccc-
Confidence 9999999999764 345555532221 2221 111111122111111211 111222233333221 0000 000000
Q ss_pred ccccccccccceeeeeeeeccCc---ceeeeecCCCcceeee
Q psy10487 414 QSVSFNDQEKKLLDVSITTTDRH---TGSCEALGSQPDMELI 452 (610)
Q Consensus 414 ~~~~~~~~~~~L~i~~v~~~D~G---~Y~C~A~N~~G~~~~~ 452 (610)
........++.|.|.+++.+|+| .|+|.|.|..|..+..
T Consensus 152 ~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~ 193 (395)
T 1bih_A 152 DRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV 193 (395)
T ss_dssp CTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEE
T ss_pred cccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEE
Confidence 11112234568999999999999 9999999999986544
No 212
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.54 E-value=1.3e-14 Score=147.29 Aligned_cols=194 Identities=12% Similarity=0.042 Sum_probs=107.0
Q ss_pred CCCCCCCCCCCCccC----CCcccccccc--cccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC
Q psy10487 231 LYSHPLSCTEPGMLQ----TKHWDDVKAQ--EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS 304 (610)
Q Consensus 231 l~~~~~~C~a~~~l~----g~~~~~v~~~--~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~ 304 (610)
.+.+.|+|.+.+... ......+... ...-+|.+...+... +.+|++++|.|.+. .+.+.+.|++++..+...
T Consensus 84 ~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~ 161 (316)
T 3vh8_G 84 AHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPS 161 (316)
T ss_dssp GGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCE
T ss_pred ccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccc
Confidence 467889997653221 1111112211 112346666555544 88999999999995 467789999998776432
Q ss_pred CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-----eEEEEEEcCccccccccccCCcceeehhhhH
Q psy10487 305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-----SGEISLDLPEINLATTLSKTDSWYMLVLGIS 379 (610)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-----~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~ 379 (610)
....... .. ...+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+...+|.+...+......+ ..
T Consensus 162 ~~~~~~~-~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G-~~ 235 (316)
T 3vh8_G 162 RLVGQIH-DG----VSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAG-ES 235 (316)
T ss_dssp EEECEEE-TT----EEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTT-SC
T ss_pred eeeeeec-CC----CceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCC-Cc
Confidence 2111110 00 234689999999999999999999998842 5566777755444454444333222211 11
Q ss_pred HHHHHHHHhheeEEEEEEeeecccccccccCCcccccc---------ccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 380 VCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVS---------FNDQEKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
+ .+.|.... +. ....|.+.+..+. .......|.|.+++ |+|.|+|.|.|..+.
T Consensus 236 v------------~L~C~~~~-~~-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~ 297 (316)
T 3vh8_G 236 V------------TLSCSSRS-SY-DMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP 297 (316)
T ss_dssp C------------EEEEEESS-CC-SEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred E------------EEEEECCC-CC-cEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence 1 22232221 11 0111111111110 11223679999999 999999999998775
No 213
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.54 E-value=1.6e-15 Score=150.01 Aligned_cols=192 Identities=14% Similarity=0.161 Sum_probs=107.9
Q ss_pred CceeeeecceEeecCceEEEEEEEE---ecCCCeEEEEeCCEEeccCCc----------------cceeeccCCceeeee
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVY---GDPEPTILWLLNGQVLHNSSF----------------DLLEEEEGDALFEKS 321 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~---g~P~p~v~W~~~g~~l~~~~~----------------~~~~~~~~~~~~~~~ 321 (610)
+.+...+..+.+.+|++++|.|.+. +.|.+.|.|++++........ ........ .....
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~ 83 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGD--TFHND 83 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSC--TTTTB
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeec--CCCCE
Confidence 4556667788999999999999998 788899999996542211100 00000000 00122
Q ss_pred eEEEEEecCCCCCeEEEEEeecCCcce--eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHH---HhheeEEEEE
Q psy10487 322 VSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI---VSIGMSFCVC 396 (610)
Q Consensus 322 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 396 (610)
+.|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|. ...| ....+..+..+.+.|.+ .+.+...+.|
T Consensus 84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~~p------~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W 155 (268)
T 3mj6_A 84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PEEP------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNW 155 (268)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CCCC------SEEEEETTCCEEECCBCEESSSSCCCEEEE
T ss_pred EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--ccCC------CccccccCCcEEEEEEecCCCCCCccceEE
Confidence 689999999999999999999986654 445666652 1111 11222222222222222 1222223334
Q ss_pred Eeeecccccc---------------cccCCcccccc----ccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 397 RAHEHKNKRR---------------KRKGKMKQSVS----FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 397 ~~~~~~~~~~---------------~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
.+........ .........+. ....+..|.|.+++.+|+|.|+|.|.|..|..+....|.|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 235 (268)
T 3mj6_A 156 MFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235 (268)
T ss_dssp EEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEE
Confidence 3322110000 00000000111 1234668999999999999999999999999999999888
Q ss_pred ccCCC
Q psy10487 458 MEQPP 462 (610)
Q Consensus 458 ~~~pp 462 (610)
...||
T Consensus 236 ~~~~p 240 (268)
T 3mj6_A 236 VQDEF 240 (268)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 65443
No 214
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.54 E-value=1.7e-15 Score=144.28 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=103.7
Q ss_pred ceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec---cCCccceeeccCCce---eeeeeEEEEEecCCCC
Q psy10487 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH---NSSFDLLEEEEGDAL---FEKSVSITLFNVTDLD 333 (610)
Q Consensus 262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~---~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D 333 (610)
.+...+ .+.+.+|++++|.|.+.|.|.+.+.|+|. +.... ...........++.. ....+.|.|.+++.+|
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 81 (213)
T 3mj8_L 3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGD 81 (213)
T ss_dssp CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhh
Confidence 444555 78899999999999999999999999982 22111 000000000000000 0123589999999999
Q ss_pred CeEEEEEeecCCc---ceeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--c--ccc
Q psy10487 334 AGEYTCYAENIRG---NASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--K--NKR 405 (610)
Q Consensus 334 ~G~Y~C~a~N~~G---~~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~ 405 (610)
+|.|+|.|.|..| .....+.|.|.... .+|.+...+...... .+ ..+.+.|...+. + ...
T Consensus 82 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~-----------~g-~~v~l~C~~~g~~p~~~~v~ 149 (213)
T 3mj8_L 82 EADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEEL-----------KT-NQATLVCMINGFYPADVAVT 149 (213)
T ss_dssp CEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHH-----------TT-TEEEEEEEEEEEBSSCCEEE
T ss_pred CEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccc-----------cC-CcEEEEEEeeceeCCCeEEE
Confidence 9999999999998 44556777774322 333333222111111 11 112334443332 1 223
Q ss_pred ccccCCccccccc-------------cccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487 406 RKRKGKMKQSVSF-------------NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS 455 (610)
Q Consensus 406 ~~~~~~~~~~~~~-------------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 455 (610)
|.+ .+..+.. ......|.|..+..+|+|.|+|.|.|..|..+..+.+
T Consensus 150 W~k---~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~ 209 (213)
T 3mj8_L 150 WEA---DGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP 209 (213)
T ss_dssp EEE---TTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred EEc---CCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence 332 2221110 0112358888888999999999999999887766543
No 215
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.54 E-value=2.1e-15 Score=157.34 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=124.1
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceee-eecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI-KESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~-~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~ 308 (610)
.+.+.|+|.+.+..+......+.... ...|.+.. ......+.+|+.++|.|.+ .+.|.+.+.|++++..+.......
T Consensus 72 ~D~G~Y~C~a~n~~g~~~s~~~~l~v-~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~ 150 (382)
T 1cs6_A 72 KDAGSYQCVATNARGTVVSREASLRF-GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGR 150 (382)
T ss_dssp HHCEEEEEEEEETTEEEECCCEEEEE-EEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSS
T ss_pred ccCEEEEEEEEcCCcEEEecceEEEe-eccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCce
Confidence 46788999987654422111121111 12222222 2456788999999999996 578999999999987643221111
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE-----EEEEEcCc---ccccccccc-CCcceeehhhhH
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG-----EISLDLPE---INLATTLSK-TDSWYMLVLGIS 379 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-----~~~L~V~~---~~~~p~~~~-~~~~~~~~~~~~ 379 (610)
..... ..+.|.|.+++.+|+|.|+|.|.|..|.... .+.|.|.. ...+|.+.. .+....+..+..
T Consensus 151 ~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~ 224 (382)
T 1cs6_A 151 RFVSQ------TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224 (382)
T ss_dssp EEECT------TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCC
T ss_pred EEEec------CceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCe
Confidence 11111 1248999999999999999999998864332 23444321 111222222 122222222221
Q ss_pred HHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 380 VCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
+. +.|.....+.+...|.+....-. .........|.|.+++.+|+|.|+|.|.|..|..+....+.|..
T Consensus 225 v~----------l~C~~~g~p~~~i~W~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 293 (382)
T 1cs6_A 225 VT----------LECFAFGNPVPQIKWRKLDGSQT-SKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 293 (382)
T ss_dssp EE----------EECEEEEESCCEEEEEECCSCCS-CCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EE----------EEEEEccCCCCEEEEEECCcccc-cEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec
Confidence 11 12222222222333332221111 12234566899999999999999999999999988888888775
Q ss_pred CC
Q psy10487 460 QP 461 (610)
Q Consensus 460 ~p 461 (610)
+|
T Consensus 294 ~p 295 (382)
T 1cs6_A 294 QP 295 (382)
T ss_dssp EE
T ss_pred CC
Confidence 43
No 216
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=2.5e-14 Score=141.38 Aligned_cols=146 Identities=17% Similarity=0.289 Sum_probs=129.1
Q ss_pred CcEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 36 KKSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
-+.+++.+++++++| .+ ..+|+.|+|++|.|+.+++ |. ++++|++|+|++|.+..++.. .. .+|++|+|+
T Consensus 43 L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~L~ 114 (263)
T 1xeu_A 43 VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LK--DLTKLEELSVNRNRLKNLNGI--PS-ACLSRLFLD 114 (263)
T ss_dssp CSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCSCCTTC--CC-SSCCEEECC
T ss_pred CcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hc--cCCCCCEEECCCCccCCcCcc--cc-CcccEEEcc
Confidence 468999999999998 44 4689999999999999987 66 799999999999999998753 33 899999999
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccC
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 193 (610)
+|+|+.++ .|..+++|+.|+|++|.++.+. .+..+++|+.|+|++|+|..+ ..+..+++|+.|++++|.+...+
T Consensus 115 ~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 115 NNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 99999984 4899999999999999999985 588899999999999999988 56888999999999999998775
Q ss_pred cc
Q psy10487 194 ES 195 (610)
Q Consensus 194 ~~ 195 (610)
..
T Consensus 189 ~~ 190 (263)
T 1xeu_A 189 VK 190 (263)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 217
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.54 E-value=3.9e-15 Score=155.53 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=106.6
Q ss_pred CCceeeeecc-eEeecCceEEEEEEEEecCCCeEEEEe-CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCC----
Q psy10487 260 PPNVTIKESM-VIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD---- 333 (610)
Q Consensus 260 ~P~i~~~~~~-~~v~~G~~v~l~C~~~g~P~p~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D---- 333 (610)
+|.|...|.. +.+.+|+.++|.|.+.|.|.|+|.|++ +|..+.......... ..+.|.|.+++.+|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~~~~ 74 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQIS--------SDGKLVFPPFRAEDYRQE 74 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEEC--------STTEEEECCCCGGGCCHH
T ss_pred CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEc--------CCceEEecccChhhcccc
Confidence 4677777654 557899999999999999999999999 787765433222211 23489999999987
Q ss_pred --CeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhh---eeEEEEEEeeeccccccc
Q psy10487 334 --AGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSI---GMSFCVCRAHEHKNKRRK 407 (610)
Q Consensus 334 --~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 407 (610)
+|.|+|.|.|..|.. +..+.|.|.. +|.+........+..+..+.+.|.+.+. ....+.|.+....... .
T Consensus 75 ~d~G~Y~C~a~n~~g~~~s~~~~v~v~~---~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~-~ 150 (388)
T 2v5m_A 75 VHAQVYACLARNQFGSIISRDVHVRAVV---AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYF-P 150 (388)
T ss_dssp HHEEEEEEEEEETTEEEECCCEEEEEEC---CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEEC-S
T ss_pred ccCceEEEEEEccCCeEEecceEEEEcc---ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccc-c
Confidence 999999999999975 4456666532 2223222222233222222222222221 1123333332221110 0
Q ss_pred ccCCccccccccccccceeeeeeeeccC-cceeeeecCCCcc
Q psy10487 408 RKGKMKQSVSFNDQEKKLLDVSITTTDR-HTGSCEALGSQPD 448 (610)
Q Consensus 408 ~~~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~A~N~~G~ 448 (610)
....... .....++.|.|.+++.+|+ |.|+|.|.|..|.
T Consensus 151 -~~~~~~~-~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~ 190 (388)
T 2v5m_A 151 -GAEYDGK-YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG 190 (388)
T ss_dssp -SSCBTTT-EEECTTSCEEESSCCGGGGGCCEEEEEEETTTC
T ss_pred -ccCCCCc-EEEccCCcEEEecCCccccCeeEEEEeccCCCC
Confidence 0000111 1123456899999999999 9999999998643
No 218
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=3.9e-14 Score=161.76 Aligned_cols=173 Identities=17% Similarity=0.266 Sum_probs=139.9
Q ss_pred cEEEcCCCCCCccCcccC--CC-ccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchh---hhc--CCCCCc
Q psy10487 37 KSALCKDANFTALPSTLD--SD-IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD---TFK--YLTILV 108 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l~--~~-L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~---~f~--~l~~L~ 108 (610)
+.++..+++++.+|..+. .+ |+.|+|++|.|+.++ ..+......+|+.|+|++|.+....+. .+. .+.+|+
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 578889999999997664 35 999999999999877 444433445699999999998765432 122 345899
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCC-------CCccEEEccCccccccCHHHhh--cCccc
Q psy10487 109 EVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKL-------PYLKTIELQHCQIHSVHKDALI--HLTAL 179 (610)
Q Consensus 109 ~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L 179 (610)
+|+|++|+|..++...|..+++|+.|+|++|.++.++...+..+ ++|+.|+|++|+|+.++ ..+. .+++|
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~~l~~~~l~~L 755 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYL 755 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-GGGSTTTCTTC
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch-HHhhhccCCCc
Confidence 99999999999988888889999999999999998877666543 38999999999999875 4454 88999
Q ss_pred cccccccccccccCcccccCCCcccEEecCCCc
Q psy10487 180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212 (610)
Q Consensus 180 ~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~ 212 (610)
+.|+|++|++++++. .+..+++|+.|++++|+
T Consensus 756 ~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 756 SNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CEEECCSSCCSSCCC-GGGGCTTCCEEECCCCB
T ss_pred CEEEeCCCCCCccch-hhhcCCCCCEEECCCCC
Confidence 999999999999755 45688999999998865
No 219
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.54 E-value=3.1e-14 Score=121.43 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=82.1
Q ss_pred cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
..+|.|...+..+.+.+|+.++|.|.+.|.|.|.+.|+|++..+....+....... ..+.|.|.+++.+|+|.|
T Consensus 5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~Y 78 (114)
T 2cqv_A 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE------NGSKLTILAARQEHCGCY 78 (114)
T ss_dssp CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECS------SEEEEEETTCCTTTCEEE
T ss_pred CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcC------CEEEEEECCCChhcCEEE
Confidence 35788888888999999999999999999999999999999888765432222111 145899999999999999
Q ss_pred EEEeecCCcceeEEEEEEcCcccccc
Q psy10487 338 TCYAENIRGNASGEISLDLPEINLAT 363 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~~~~~p 363 (610)
+|.|.|..|.....+.|.|.+.+.+|
T Consensus 79 ~C~a~N~~g~~~~~~~l~V~~~p~~P 104 (114)
T 2cqv_A 79 TLLVENKLGSRQAQVNLTVVDKPDPP 104 (114)
T ss_dssp EEEEECSSCEEECCEEEEEECSCSCC
T ss_pred EEEEEECCCcEEEEEEEEEECCCCCC
Confidence 99999999999999999986544433
No 220
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.54 E-value=9.4e-15 Score=138.72 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=100.4
Q ss_pred eecceEeecCceEEEEEEEEecCCCe---EEEEeCCEEeccCCc------cc-eeecc--------CCceeeeeeEEEEE
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDPEPT---ILWLLNGQVLHNSSF------DL-LEEEE--------GDALFEKSVSITLF 327 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P~p~---v~W~~~g~~l~~~~~------~~-~~~~~--------~~~~~~~~~~L~I~ 327 (610)
.+..+.+.+|++++|.|.+.|.|.+. |.|+|++..+..... .. ..... ........++|.|.
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 84 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR 84 (218)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence 35667889999999999999988764 899997654332110 00 00000 00001123579999
Q ss_pred ecCCCCCeEEEEEeecCCcceeE-EEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec--ccc
Q psy10487 328 NVTDLDAGEYTCYAENIRGNASG-EISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH--KNK 404 (610)
Q Consensus 328 ~v~~~D~G~Y~C~a~N~~G~~~~-~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 404 (610)
+++.+|+|.|.|.+.|..+.... ...+.+.... . .............+. .+.+.|..... +..
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~------------~~~~~c~~~g~p~p~i 150 (218)
T 4frw_A 85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP-L-PSLNPGPALEEGQGL------------TLAASCTAEGSPAPSV 150 (218)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC-C-CEEEECSCEETTCCS------------EEEEEEEEEEBSCCEE
T ss_pred eccHHHCCceeEEEEeccCceeeeEEEEEEeeec-c-ceeeeeeeeeeeecc------------ccceeeeccCCcCceE
Confidence 99999999999999987765433 3444332111 1 111111111111111 11233333333 333
Q ss_pred cccccCCcccc---cc---ccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 405 RRKRKGKMKQS---VS---FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 405 ~~~~~~~~~~~---~~---~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
.|.+....-.. .. .......|.|..+..+|.|.|+|.|.|.+|..+....+.+
T Consensus 151 ~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v 209 (218)
T 4frw_A 151 TWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL 209 (218)
T ss_dssp EEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred EEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence 34332211110 00 0112346999999999999999999999998877665543
No 221
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.54 E-value=1.6e-14 Score=154.17 Aligned_cols=207 Identities=14% Similarity=0.157 Sum_probs=124.2
Q ss_pred CCCCCCCCCCCccCCCcccccccccccCCCcee-eeecceEeecCceEEEEEEEEecCCC---eEEEEeCCEEeccCCcc
Q psy10487 232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVT-IKESMVIREAGGNVTMSCYVYGDPEP---TILWLLNGQVLHNSSFD 307 (610)
Q Consensus 232 ~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~-~~~~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~~g~~l~~~~~~ 307 (610)
+.+ |+|.+. ...+.....+...... +|.+. ..+....+.+|+.++|.|.+.|.|+| .|.|+|++..+......
T Consensus 60 d~g-Y~C~a~-~~~~~~~~~~~l~V~~-~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~ 136 (450)
T 1z7z_I 60 DSQ-PMCYSN-CPDGQSTAKTFLTVYW-TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV 136 (450)
T ss_dssp CBC-CEEEEE-ETTEEEEEECEEEEEB-CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC
T ss_pred CCe-eEEEEe-CCCCcceeEEEEEEEe-CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc
Confidence 566 999884 3333232333333333 55554 55677889999999999999999988 99999999988654321
Q ss_pred ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee--------EEEEEEcCcc-ccccccccCCcceeehhhh
Q psy10487 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS--------GEISLDLPEI-NLATTLSKTDSWYMLVLGI 378 (610)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~--------~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~ 378 (610)
. . ...+.|.|.+++.+|+|.|+|.|.|..|... ....+.|... ..+|.+... ..+..+.
T Consensus 137 ~----~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~---~~v~~G~ 204 (450)
T 1z7z_I 137 G----E-----PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP---RVLEVDT 204 (450)
T ss_dssp T----T-----TEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC---SEEETTS
T ss_pred c----c-----ccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc---eeEEeCC
Confidence 1 1 2235899999999999999999999988543 2334444322 112222111 1111111
Q ss_pred HHHHHHHHHhheeEEEEEEeeec-c----cccccccCCccccccccccccceee---eeeeeccCc--ceeeeecCCCcc
Q psy10487 379 SVCVVSVIVSIGMSFCVCRAHEH-K----NKRRKRKGKMKQSVSFNDQEKKLLD---VSITTTDRH--TGSCEALGSQPD 448 (610)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~L~i---~~v~~~D~G--~Y~C~A~N~~G~ 448 (610)
.+.+.|...+. + ...|.+.+..-.. ........+.+ .+++.+|+| .|+|.|.|..|.
T Consensus 205 ------------~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~ 271 (450)
T 1z7z_I 205 ------------QGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS 271 (450)
T ss_dssp ------------EEEEEEEEESCTTGGGCEEEEEETTEECCC-EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEE
T ss_pred ------------cEEEEEEeeCCCCCCceEEEEeCCCEeCCc-eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCcc
Confidence 12334544433 2 2222222211111 11111112222 266889999 999999999999
Q ss_pred eeeeeecccccCCCccee
Q psy10487 449 MELIEQSLAMEQPPVHIT 466 (610)
Q Consensus 449 ~~~~~~l~v~~~pp~~i~ 466 (610)
.+..+.+.|...|+..++
T Consensus 272 ~~~~~~l~V~~~~~p~i~ 289 (450)
T 1z7z_I 272 QETLQTVTIYSFPAPNVI 289 (450)
T ss_dssp EEEEEEEEEECCCCCEEE
T ss_pred EEEEEEEEEecCCCCeEe
Confidence 999999988875554443
No 222
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.53 E-value=9.5e-14 Score=148.51 Aligned_cols=156 Identities=20% Similarity=0.234 Sum_probs=94.4
Q ss_pred CcEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 36 KKSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
-+.+++.+++++.+| .+ ..+|++|+|++|.|+.++ +. .+++|++|+|++|.+..++ |+.+++|++|+|+
T Consensus 44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114 (457)
T ss_dssp CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence 366778777777776 33 357888888888887764 44 5677788888777777763 6777777777777
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCc-cccccCHHHhhcCcccccccccccccccc
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC-QIHSVHKDALIHLTALESLNLNGNRLKHL 192 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 192 (610)
+|++..++ |..+++|++|+|++|.++.+. +..+++|+.|++++| .+..+ .+..+++|+.|++++|+++.+
T Consensus 115 ~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 115 TNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence 77777763 667777777777777776652 444445555555544 22222 133344444444444444443
Q ss_pred CcccccCCCcccEEecCCCc
Q psy10487 193 SESVFFPTPNLKTLSLDGNP 212 (610)
Q Consensus 193 ~~~~~~~~~~L~~l~l~~N~ 212 (610)
+ +..+++|+.|++++|.
T Consensus 186 ~---l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 186 D---VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp C---CTTCTTCCEEECCSSC
T ss_pred c---cccCCCCCEEECcCCc
Confidence 2 2333344444444443
No 223
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.53 E-value=1.9e-14 Score=137.00 Aligned_cols=175 Identities=16% Similarity=0.148 Sum_probs=100.2
Q ss_pred eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EEec---cCCccceeeccCCceee---eeeEEEEEecCCCCC
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QVLH---NSSFDLLEEEEGDALFE---KSVSITLFNVTDLDA 334 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~l~---~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~ 334 (610)
+...+..+.+.+|++++|.|.+.|.|.|.|.|+|++ ..+. ...........++.... ....|.|.+++.+|+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF 83 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence 444577888999999999999999999999999843 2110 00000000000110111 124899999999999
Q ss_pred eEEEEEeecCCccee-EEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-cc---ccccccc
Q psy10487 335 GEYTCYAENIRGNAS-GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-HK---NKRRKRK 409 (610)
Q Consensus 335 G~Y~C~a~N~~G~~~-~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~ 409 (610)
|.|+|.|.|..|... ..+.|.|.....+|.+......... ..+. .+.+.|...+ .+ ...|.+.
T Consensus 84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~-----------~~g~-~~~l~C~~~g~~p~~~~v~W~k~ 151 (213)
T 3d9a_L 84 GMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQ-----------LTSG-GASVVCFLNNFYPKDINVKWKID 151 (213)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHH-----------HHTT-EEEEEEEEEEEBSSCCEEEEEET
T ss_pred EEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhh-----------cCCC-cEEEEEEEeeecCCceEEEEEcC
Confidence 999999999988643 3456777543334443321111100 0111 2234454433 22 2234332
Q ss_pred CCccc-c------ccccc-----cccceeeeeeeeccCcceeeeecCCCcce
Q psy10487 410 GKMKQ-S------VSFND-----QEKKLLDVSITTTDRHTGSCEALGSQPDM 449 (610)
Q Consensus 410 ~~~~~-~------~~~~~-----~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 449 (610)
+..-. . ..... ....|.|.++..+|+|.|+|.|.|.....
T Consensus 152 g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 152 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp TEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred CCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 21100 0 00001 12379999999999999999999987664
No 224
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.2e-14 Score=133.36 Aligned_cols=133 Identities=21% Similarity=0.189 Sum_probs=117.6
Q ss_pred CCCCccEEEcccCCCc--ccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCcc
Q psy10487 79 GLLNLQRIYLKNSGIR--EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLK 156 (610)
Q Consensus 79 ~l~~L~~L~L~~n~l~--~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 156 (610)
...+|+.|+|++|.+. .+ +..|..+++|++|+|++|+|..+ ..|..+++|++|+|++|.++...+..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3578999999999998 55 45589999999999999999988 6789999999999999999996666666799999
Q ss_pred EEEccCccccccCH-HHhhcCccccccccccccccccCc---ccccCCCcccEEecCCCccc
Q psy10487 157 TIELQHCQIHSVHK-DALIHLTALESLNLNGNRLKHLSE---SVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 157 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~l~~N~~~ 214 (610)
.|+|++|+|+.+.. ..+..+++|+.|++++|.++.++. ..+..+++|+.|++.+|...
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999999853 678899999999999999999887 67889999999999988753
No 225
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.53 E-value=4.5e-15 Score=151.79 Aligned_cols=175 Identities=10% Similarity=0.058 Sum_probs=103.6
Q ss_pred eecceEeecCceEEEEEEEEec---------CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe-
Q psy10487 266 KESMVIREAGGNVTMSCYVYGD---------PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG- 335 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~---------P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G- 335 (610)
....+.+.+|+.++|.|.+.|. |.+.|.|+|++..+....+. ...+.|.|.+++.+|+|
T Consensus 35 ~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-----------~~~~~L~i~~v~~~D~Gs 103 (329)
T 3oq3_B 35 GTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-----------VKNGDLWIANYTSNDSHR 103 (329)
T ss_dssp EEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-----------EETTEEEESSCCGGGGGC
T ss_pred CcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-----------eecceEEEcCCChHhCCC
Confidence 3466778999999999999884 66899999999776543221 12348999999999999
Q ss_pred EEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe-eEEEEEEeeecccccccccCCccc
Q psy10487 336 EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG-MSFCVCRAHEHKNKRRKRKGKMKQ 414 (610)
Q Consensus 336 ~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 414 (610)
.|+|.|.|..|.......+.|.. .+|.+...........+..+.+.|.+.+.+ ...+.|.+.+... ...
T Consensus 104 ~Y~C~a~n~~g~~~~~~~~~v~~--~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l--------~~~ 173 (329)
T 3oq3_B 104 RYLCTVTTKNGDCVQGIVRSHIR--KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL--------IID 173 (329)
T ss_dssp CEEEEEECTTSCEEEEEEEEEEC--CCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEEC--------CCS
T ss_pred cEEEEEEeCCCceeeEEEEEEEc--CCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccC--------CCC
Confidence 99999999998765544333321 122221111111111111111112222222 1222222211110 001
Q ss_pred cccccccccceeeeeeeeccCcceeeeecCC--Ccceeee----eecccccCC
Q psy10487 415 SVSFNDQEKKLLDVSITTTDRHTGSCEALGS--QPDMELI----EQSLAMEQP 461 (610)
Q Consensus 415 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~--~G~~~~~----~~l~v~~~p 461 (610)
...+...++.|.|.+++.+|+|.|+|.|.|. .|..... ..|.|.+.|
T Consensus 174 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~ 226 (329)
T 3oq3_B 174 GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ 226 (329)
T ss_dssp SSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred CceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence 1112223578999999999999999999997 7655544 556565443
No 226
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.52 E-value=3.1e-14 Score=144.56 Aligned_cols=165 Identities=13% Similarity=0.070 Sum_probs=104.0
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
-+|.+...+. ..+.+|++++|.|.+.|. .+.+.|+|+|..+..... .. ...+.|.|.+++.+|+|.|+
T Consensus 23 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~--~~--------~~~~~L~I~~v~~~D~G~Y~ 90 (316)
T 3vh8_G 23 DKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH--GR--------IFQESFNMSPVTTAHAGNYT 90 (316)
T ss_dssp -CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH--HC--------CBSSCEEECSCCGGGCEEEE
T ss_pred CCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec--CC--------cceEEEEECCCCcccCeEEE
Confidence 4677777777 578899999999999988 789999999976543210 00 12348999999999999999
Q ss_pred EEeecCC-----cceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccc-ccccccCCc
Q psy10487 339 CYAENIR-----GNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKN-KRRKRKGKM 412 (610)
Q Consensus 339 C~a~N~~-----G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 412 (610)
|.|.|.. +..+..+.|.|......|.+...+......+ .. +.+.|.....+. ..|.+.+..
T Consensus 91 C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G-~~------------v~L~C~~~~~~~~~~w~k~g~~ 157 (316)
T 3vh8_G 91 CRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSG-ER------------VILQCWSDIMFEHFFLHKEGIS 157 (316)
T ss_dssp EEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETT-CC------------EEEEEEESSCCSEEEEEETTCC
T ss_pred EEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCC-Ce------------EEEEEcCCCCCcEEEEEECCCc
Confidence 9998743 2345567777755444455544433332222 11 122333321111 112111111
Q ss_pred cc------cccccccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 413 KQ------SVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 413 ~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
.. ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 199 (316)
T 3vh8_G 158 KDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTP 199 (316)
T ss_dssp SCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred cccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence 10 0111234568999999999999999999999885
No 227
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=1.2e-14 Score=130.53 Aligned_cols=127 Identities=24% Similarity=0.324 Sum_probs=89.1
Q ss_pred CCCccEEEeecCCCC--CCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCC
Q psy10487 54 DSDIQVLDLNNNKIS--YLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRL 131 (610)
Q Consensus 54 ~~~L~~L~L~~n~i~--~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L 131 (610)
+.+++.|++++|.|+ .++. .+. .+++|+.|++++|.+..+ ..|..+++|++|+|++|++....+..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTD--EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCT--TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHH-HHh--hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 456778888888776 4443 444 577778888877777777 557777777888887777777555666667777
Q ss_pred cEEEeeCccccccC-cCcCCCCCCccEEEccCccccccCH---HHhhcCccccccccc
Q psy10487 132 KVLYLNGNPITELR-AGQFPKLPYLKTIELQHCQIHSVHK---DALIHLTALESLNLN 185 (610)
Q Consensus 132 ~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~ 185 (610)
++|+|++|.++.+. ...+..+++|+.|++++|+++.+.+ ..+..+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777777653 2456677777777777777777655 456667777777664
No 228
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.52 E-value=7.9e-15 Score=136.35 Aligned_cols=167 Identities=15% Similarity=0.151 Sum_probs=104.2
Q ss_pred ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC-Cccceeec----cCCcee------eeeeEEEEEecCCCCCeEE
Q psy10487 269 MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS-SFDLLEEE----EGDALF------EKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 269 ~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~-~~~~~~~~----~~~~~~------~~~~~L~I~~v~~~D~G~Y 337 (610)
.+.+.+|++++|.|.+.+.|.+.+.|++++..+... ........ ..+... .....|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 457889999999999999999999999988632111 00000000 000000 0123699999999999999
Q ss_pred EEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccc
Q psy10487 338 TCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVS 417 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (610)
+|.|.|..| .+.|.|.....+ +......+ .. +.+.|.....+.. ...|.+.+...
T Consensus 84 ~C~~~~~~~----~~~l~V~~~~~~------~~~~v~~g-~~------------~~l~C~~~~~p~~-~v~W~~~~~~~- 138 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFGLTAN------SDTHLLQG-QS------------LTLTLESPPGSSP-SVQCRSPRGKN- 138 (184)
T ss_dssp EEEETTEEE----EEEEEEEEEEES------SCSEEETT-CC------------EEEEEECCTTCCC-EEEEECTTSCE-
T ss_pred EEEEEcCCC----cEEEEEEEecCC------CCceeecC-CC------------EEEEEEcCCCCCC-EEEEEeCCCcc-
Confidence 999999865 444555321111 11111111 11 1334444333322 12333333222
Q ss_pred ccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 418 FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 418 ~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
......|.|.+++.+|+|.|+|.|.|..|..+..+.+.|...|
T Consensus 139 -~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p 181 (184)
T 2ny1_B 139 -IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181 (184)
T ss_dssp -EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred -ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence 3456789999999999999999999999999998888887654
No 229
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.52 E-value=1.1e-13 Score=148.05 Aligned_cols=158 Identities=19% Similarity=0.262 Sum_probs=103.3
Q ss_pred CcEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC
Q psy10487 36 KKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n 115 (610)
-+.++..+++++.+|..-..+|++|+|++|.|+.++ +. ++++|++|++++|.+..++ |+.+++|++|++++|
T Consensus 66 L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 66 LTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARN 137 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTS
T ss_pred CCEEEccCCcCCeEccccCCCCCEEECcCCCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCC
Confidence 367888888888887555568999999999998874 54 6888999999999888874 788888888888888
Q ss_pred CCCCCCcccccCCCCCcEEEeeCc-cccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCc
Q psy10487 116 QIAWLHQDTFLGNDRLKVLYLNGN-PITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194 (610)
Q Consensus 116 ~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 194 (610)
+++.++ +..+++|++|++++| .+..+ .+..+++|+.|++++|+++.++ +..+++|+.|++++|.++.++
T Consensus 138 ~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~- 207 (457)
T 3bz5_A 138 TLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD- 207 (457)
T ss_dssp CCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC-
T ss_pred ccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec-
Confidence 888763 555666666666666 23222 2444555555555555555542 344445555555555544441
Q ss_pred ccccCCCcccEEecCCCcc
Q psy10487 195 SVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 195 ~~~~~~~~L~~l~l~~N~~ 213 (610)
+..+++|+.|++++|.+
T Consensus 208 --l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 208 --LNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp --CTTCTTCSEEECCSSCC
T ss_pred --cccCCCCCEEECcCCcc
Confidence 33444444444444444
No 230
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.52 E-value=2.4e-14 Score=139.64 Aligned_cols=163 Identities=16% Similarity=0.093 Sum_probs=103.4
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+.. .+.+|++++|.|.+.+ +.+.+.|+|+|..+...... ... ....+.|.|.+++.+|+|.|+|
T Consensus 7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~--~~~-----~~~~~~L~I~~v~~~DsG~Y~C 77 (242)
T 1p6f_A 7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK--PPE-----RINKVKFYIPDMNSRMAGQYSC 77 (242)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS--SCT-----TCCEEEEEECSCCGGGCEEEEE
T ss_pred CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccccccc--ccC-----CcceeEEEecCCCcccCeEEEE
Confidence 5778777776 8899999999999875 45789999999876521110 000 0234589999999999999999
Q ss_pred EeecCCcc--eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccc-
Q psy10487 340 YAENIRGN--ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSV- 416 (610)
Q Consensus 340 ~a~N~~G~--~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 416 (610)
.+.|..|. .+..+.|.|.+....|.+...+......+. . +...|....... ...|.+++..+
T Consensus 78 ~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~-~------------vtL~C~~~~~~~--~~~w~k~g~~~~ 142 (242)
T 1p6f_A 78 IYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE-K------------VTFYCRLDTATS--MFLLLKEGRSSH 142 (242)
T ss_dssp EEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTC-E------------EEEEEECTTSCS--EEEEEECSSSCE
T ss_pred EEecCCccccCCcceEEEeecccCCCceEccCCCccCCCC-c------------EEEEEecCCCCC--EEEEEECCCccC
Confidence 99987653 355677777554444554433332222221 1 122333222111 11222222211
Q ss_pred ---cccccccceeeeeeeeccCcceeeeecCCC
Q psy10487 417 ---SFNDQEKKLLDVSITTTDRHTGSCEALGSQ 446 (610)
Q Consensus 417 ---~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~ 446 (610)
........|.|.+|+.+|+|.|+|.|.|..
T Consensus 143 ~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~ 175 (242)
T 1p6f_A 143 VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN 175 (242)
T ss_dssp EEEEECSSEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred ccccCCCceEEEEeCCCccccCEEEEEEEECCC
Confidence 122455689999999999999999999864
No 231
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.6e-14 Score=133.66 Aligned_cols=131 Identities=20% Similarity=0.247 Sum_probs=81.4
Q ss_pred CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL 134 (610)
Q Consensus 55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L 134 (610)
.+++.|+|++|.|+.++. ... ..++|++|+|++|.|..+ ..|..+++|++|+|++|+|..+++..|..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~~i~~-~~~--~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCchhHH-hhh--cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 466777777777776632 221 123677777777777666 356667777777777777776665555666677777
Q ss_pred EeeCccccccCc-CcCCCCCCccEEEccCccccccCHH---HhhcCcccccccccccccc
Q psy10487 135 YLNGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHKD---ALIHLTALESLNLNGNRLK 190 (610)
Q Consensus 135 ~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~ 190 (610)
+|++|.++.++. ..+..+++|+.|++++|.+..++.. .+..+++|+.|+++.|.+.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777776666543 2455666666666666666655432 3555666666666666544
No 232
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.52 E-value=4.3e-14 Score=150.90 Aligned_cols=227 Identities=15% Similarity=0.120 Sum_probs=128.1
Q ss_pred cCCCCCCCCCCCCccCCCcc-------c--ccccccc-cCCCceeeeecceEeecCceEEEEEEEEec-C--CCeEEEEe
Q psy10487 230 KLYSHPLSCTEPGMLQTKHW-------D--DVKAQEF-ACPPNVTIKESMVIREAGGNVTMSCYVYGD-P--EPTILWLL 296 (610)
Q Consensus 230 ~l~~~~~~C~a~~~l~g~~~-------~--~v~~~~~-~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P--~p~v~W~~ 296 (610)
..+.+.|+|.+.+..+.... . .+....+ ..+|.+.. ...+.+|+.++|.|.+.|. | .+.+.|++
T Consensus 151 ~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~ 227 (450)
T 1z7z_I 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL 227 (450)
T ss_dssp SCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEE
T ss_pred cccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeC
Confidence 34688999998876542211 0 0111111 11233222 2678899999999999999 7 79999999
Q ss_pred CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe--EEEEEeecCCcceeEEEEEEcCccccccccccCCcceee
Q psy10487 297 NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG--EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYML 374 (610)
Q Consensus 297 ~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G--~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~ 374 (610)
++..+... ...... .....+.+ +++.+|+| .|+|.|.|..|.....+.|.|...+. |.+..... ...
T Consensus 228 ~~~~~~~~----~~~~~~----~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~-p~i~~~~~-~v~ 296 (450)
T 1z7z_I 228 GDQRLNPT----VTYGND----SFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA-PNVILTKP-EVS 296 (450)
T ss_dssp TTEECCCE----EEEETT----EEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCC-CEEEESCS-EEE
T ss_pred CCEeCCce----EEecCC----ceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCC-CeEecCCe-eEe
Confidence 99887652 111111 11122333 78999999 99999999999998888888854322 34432221 111
Q ss_pred hhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCc-c---ee
Q psy10487 375 VLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQP-D---ME 450 (610)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G-~---~~ 450 (610)
.+ . .+.+.|...+.+...| .+..+........|.|..+..+|+|.|+|.|.|..| . ..
T Consensus 297 ~G-~------------~v~l~C~~~p~p~i~W-----~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~ 358 (450)
T 1z7z_I 297 EG-T------------EVTVKCEAHPRAKVTL-----NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 358 (450)
T ss_dssp TT-C------------EEEEEEEC---------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEE
T ss_pred CC-C------------cEEEEEecCCCCEeEE-----CCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccc
Confidence 11 1 1234454444444444 222222233445899999999999999999998665 3 33
Q ss_pred eeeecccccCCCcc-------eeEecCCCC--Cc-ccccCCCc-ccccC
Q psy10487 451 LIEQSLAMEQPPVH-------ITIESHAVD--PQ-VSVFPPPP-EFSSN 488 (610)
Q Consensus 451 ~~~~l~v~~~pp~~-------i~ie~~~~~--~l-~~~~P~pp-ef~~~ 488 (610)
....|.|..+|... +++.....- .| +.++|+|- .|..+
T Consensus 359 ~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~ 407 (450)
T 1z7z_I 359 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD 407 (450)
T ss_dssp EEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEET
T ss_pred eeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEEC
Confidence 56677665443221 122221111 33 77787776 66633
No 233
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.52 E-value=7.1e-14 Score=154.44 Aligned_cols=201 Identities=13% Similarity=0.114 Sum_probs=121.7
Q ss_pred eecceEeecCceEEEEEEEEecCCC---eEEEEeCCEEe-----ccCCccceeeccCCceee-----eeeEEEEEecCCC
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDPEP---TILWLLNGQVL-----HNSSFDLLEEEEGDALFE-----KSVSITLFNVTDL 332 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~~g~~l-----~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~ 332 (610)
.|..+.+.+|+.++|.|.+.|.|.| .+.|+|++... ............++..+. ....|+|.+++.+
T Consensus 6 ~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~ 85 (585)
T 2ocw_A 6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD 85 (585)
T ss_pred CcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcc
Confidence 4667889999999999999998765 89999987532 111000000000000011 1247999999999
Q ss_pred CCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe-eEEEEEEeeecccccccccC-
Q psy10487 333 DAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG-MSFCVCRAHEHKNKRRKRKG- 410 (610)
Q Consensus 333 D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 410 (610)
|+|.|+|.|.|..|..+..+.|.|.. +|.+...+....+..+..+.+.|.+.+.. ...+.|++............
T Consensus 86 D~G~Y~C~~~n~~~~~~~~~~l~V~~---~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~ 162 (585)
T 2ocw_A 86 DSGRYKCGLGINSRGLSFDVSLEVSQ---GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS 162 (585)
T ss_pred cCEEEEEEcccCCCCceEEEEEEEec---CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence 99999999999999888888888843 34444444444444433333333332211 11122222221100000000
Q ss_pred -----Cccccccccccc-----cceeeeeeeeccCcceeeeecCCCcceeeeeecccccCCCcceeEec
Q psy10487 411 -----KMKQSVSFNDQE-----KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIES 469 (610)
Q Consensus 411 -----~~~~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~pp~~i~ie~ 469 (610)
.......+...+ ..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...+|..+.+..
T Consensus 163 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~ 231 (585)
T 2ocw_A 163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231 (585)
T ss_pred cccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcC
Confidence 001111111111 27999999999999999999999999999999999887776655443
No 234
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.52 E-value=5.1e-14 Score=117.57 Aligned_cols=95 Identities=22% Similarity=0.358 Sum_probs=80.1
Q ss_pred ccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487 257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336 (610)
Q Consensus 257 ~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 336 (610)
+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+....... ....|.|.+++.+|+|.
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~D~G~ 78 (103)
T 3qp3_A 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS------GVLTLEILDCHTDDSGT 78 (103)
T ss_dssp TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEET------TEEEEEECSCCGGGCEE
T ss_pred CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECC------CEEEEEEcCCCcccCEE
Confidence 346788888889999999999999999999999999999999988766542222111 12479999999999999
Q ss_pred EEEEeecCCcceeEEEEEEcC
Q psy10487 337 YTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 337 Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
|+|.|.|..|..+..+.|.|.
T Consensus 79 Y~C~a~N~~G~~~~~~~l~V~ 99 (103)
T 3qp3_A 79 YRAVCTNYKGEASDYATLDVT 99 (103)
T ss_dssp EEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEeCCCcEEEEEEEEEE
Confidence 999999999999999999884
No 235
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.51 E-value=6.3e-14 Score=116.05 Aligned_cols=93 Identities=22% Similarity=0.265 Sum_probs=78.0
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+....+.+|+.++|.|.+.|.|.|.+.|+++|..+............. ....|.|.+++.+|+|.|+|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C 79 (99)
T 1g1c_A 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED-----NVCELVIRDVTGEDSASIMV 79 (99)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEET-----TEEEEEECSCCGGGCEEEEE
T ss_pred CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCC-----CEEEEEECCCCcCCCEEEEE
Confidence 5778788888999999999999999999999999999999887655432221111 13489999999999999999
Q ss_pred EeecCCcceeEEEEEEcC
Q psy10487 340 YAENIRGNASGEISLDLP 357 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~ 357 (610)
.|.|..|.....+.|.|.
T Consensus 80 ~a~N~~g~~~~~~~l~V~ 97 (99)
T 1g1c_A 80 KAINIAGETSSHAFLLVQ 97 (99)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEECCCcEEEEEEEEEe
Confidence 999999999999998873
No 236
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.51 E-value=6.7e-14 Score=142.75 Aligned_cols=203 Identities=13% Similarity=0.134 Sum_probs=107.5
Q ss_pred CCCCCCCCCCCCccCCCc---c-ccccccccc--CCCceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeCCEEec
Q psy10487 231 LYSHPLSCTEPGMLQTKH---W-DDVKAQEFA--CPPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLH 302 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~---~-~~v~~~~~~--c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~ 302 (610)
.+.+.|+|.+.+...... . ..+...... -+|.+. .....+.+|+.++|.|.+.|.|+| .+.|+++|..+.
T Consensus 84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~--~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~ 161 (327)
T 2wng_A 84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS--GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS 161 (327)
T ss_dssp GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE--CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee--ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcc
Confidence 367889998866532210 0 111111111 123332 234667899999999999999877 899999999887
Q ss_pred cCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce---eEEEEEEcCccccccccccCCcceeehhhhH
Q psy10487 303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA---SGEISLDLPEINLATTLSKTDSWYMLVLGIS 379 (610)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~---~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~ 379 (610)
..... ......++.+...+.|.|.....+|.|.|+|.|.|..|.. ..++.+.+. ...+|.+...+.. +..+..
T Consensus 162 ~~~~~-~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~-v~~~P~i~~~~~~--~~~G~~ 237 (327)
T 2wng_A 162 DFQTN-VDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET-IRVPPTLEVTQQP--VRAENQ 237 (327)
T ss_dssp CEEEE-EECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT-BCBCCEEEEEEEC--CSSTTC
T ss_pred ccccc-cccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc-cCCCCEEEEecCC--cCCCCc
Confidence 54421 1111222334555678998888788899999999998863 334444332 1223333322221 111111
Q ss_pred HHHHHHHHhheeEEEEEEeeecc----cccccccCCccc----cccccccc------cceeeeeeeeccCcceeeeecCC
Q psy10487 380 VCVVSVIVSIGMSFCVCRAHEHK----NKRRKRKGKMKQ----SVSFNDQE------KKLLDVSITTTDRHTGSCEALGS 445 (610)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~------~~L~i~~v~~~D~G~Y~C~A~N~ 445 (610)
+.+.|...+.+ ...|.+.+..-. .......+ ..|.|..+..+|+|.|+|.|.|.
T Consensus 238 ------------v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 305 (327)
T 2wng_A 238 ------------VNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHD 305 (327)
T ss_dssp ------------CEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEET
T ss_pred ------------EEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeC
Confidence 12344433321 122322211100 00011111 34778888889999999999999
Q ss_pred Ccceee
Q psy10487 446 QPDMEL 451 (610)
Q Consensus 446 ~G~~~~ 451 (610)
+|..-.
T Consensus 306 ~~~~~s 311 (327)
T 2wng_A 306 GQPAVS 311 (327)
T ss_dssp TCCCEE
T ss_pred CCCCch
Confidence 987433
No 237
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.51 E-value=4.4e-15 Score=151.54 Aligned_cols=181 Identities=17% Similarity=0.129 Sum_probs=101.6
Q ss_pred ceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEec----cCC---cccee-eccCCceeeeeeEEEEEecCCC
Q psy10487 262 NVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLH----NSS---FDLLE-EEEGDALFEKSVSITLFNVTDL 332 (610)
Q Consensus 262 ~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~----~~~---~~~~~-~~~~~~~~~~~~~L~I~~v~~~ 332 (610)
.+...+..+.+.+|++++|.|.+.|. |.|.|.|++++.... ... ..+.. ...........+.|.|.+++.+
T Consensus 5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~ 84 (327)
T 2wng_A 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA 84 (327)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence 45556778899999999999999998 999999999875321 100 00000 0000000022358999999999
Q ss_pred CCeEEEEEeecCCcce-----eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccccc-c
Q psy10487 333 DAGEYTCYAENIRGNA-----SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKR-R 406 (610)
Q Consensus 333 D~G~Y~C~a~N~~G~~-----~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 406 (610)
|+|.|+|.|.|..|.. ...+.|.|...+..|.+.. +.. .+..+.. +.+.|...+.+... .
T Consensus 85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~-~~~-~~~~g~~------------~~l~C~~~g~p~~~~~ 150 (327)
T 2wng_A 85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG-PAA-RATPQHT------------VSFTCESHGFSPRDIT 150 (327)
T ss_dssp GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEEC-CSS-CBCTTCE------------EEEEEEEEEEBSSCCE
T ss_pred cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeec-ccc-ccCCCCE------------EEEEEEEeCccCCCcE
Confidence 9999999999987742 2346677754444444432 221 1111111 13344433332210 1
Q ss_pred cccCCcccccccc-------cc------ccceeeeeeeeccCcceeeeecCCCcce---eeeeecc
Q psy10487 407 KRKGKMKQSVSFN-------DQ------EKKLLDVSITTTDRHTGSCEALGSQPDM---ELIEQSL 456 (610)
Q Consensus 407 ~~~~~~~~~~~~~-------~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~---~~~~~l~ 456 (610)
..|.+.+..+... .. ...|.|.....+|.|.|+|.|.|..|.. +..+.+.
T Consensus 151 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~ 216 (327)
T 2wng_A 151 LKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLS 216 (327)
T ss_dssp EEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGG
T ss_pred EEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEec
Confidence 2222222211110 11 1235555555557899999999988763 4445553
No 238
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.51 E-value=4.9e-15 Score=141.39 Aligned_cols=183 Identities=10% Similarity=0.037 Sum_probs=93.7
Q ss_pred ecceEeecCceEEEEEEEEecCCCe---EEEEeCCEEeccCC-cc-------------ceeecc---CCceeeeeeEEEE
Q psy10487 267 ESMVIREAGGNVTMSCYVYGDPEPT---ILWLLNGQVLHNSS-FD-------------LLEEEE---GDALFEKSVSITL 326 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~g~P~p~---v~W~~~g~~l~~~~-~~-------------~~~~~~---~~~~~~~~~~L~I 326 (610)
+..+.+.+|++++|.|.+.|.|.+. |.|+|++..+.... .. ...... ........++|.|
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 87 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence 3456788999999999999988774 89999765432110 00 000000 0001123458999
Q ss_pred EecCCCCCeEEEEEeecCCcceeE-EEEEEcCccccccccccCCcceeeh-hhhHHHHHHHHHhheeEEEEEEeeecccc
Q psy10487 327 FNVTDLDAGEYTCYAENIRGNASG-EISLDLPEINLATTLSKTDSWYMLV-LGISVCVVSVIVSIGMSFCVCRAHEHKNK 404 (610)
Q Consensus 327 ~~v~~~D~G~Y~C~a~N~~G~~~~-~~~L~V~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (610)
.+++.+|+|.|+|.|.|..|.... ...+.+... |.....+...... .......++...+.+...+.|++......
T Consensus 88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~ 164 (225)
T 4fmk_A 88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQ---PENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEA 164 (225)
T ss_dssp CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC---CEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEE
T ss_pred ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecC---CceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCcccc
Confidence 999999999999999998876544 334444211 1111111111111 11000000000011111112221111110
Q ss_pred cccc-cCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487 405 RRKR-KGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS 455 (610)
Q Consensus 405 ~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 455 (610)
.... .....+ .....+.|.|..+..+|+|.|+|+|.|.+|..+..+.+
T Consensus 165 ~~~~~~~~~~~---~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v 213 (225)
T 4fmk_A 165 KDTQEPGIQAG---TVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPV 213 (225)
T ss_dssp EEEEEECSSTT---CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEE
T ss_pred CCcceEEecCC---CEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEE
Confidence 0000 000000 00112369999999999999999999999876654443
No 239
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.3e-13 Score=133.37 Aligned_cols=131 Identities=20% Similarity=0.210 Sum_probs=118.2
Q ss_pred CcEEEcCCCCCCccCc-cc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEc
Q psy10487 36 KKSALCKDANFTALPS-TL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDL 112 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~-~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdL 112 (610)
-+.++..+++++.++. .+ ..+|++|+|++|.|+.++...|. ++++|++|+|++|.|+.+.+..|..+++|++|+|
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD--SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc--cCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 3679999999998854 33 35899999999999999998888 7999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC
Q psy10487 113 SDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169 (610)
Q Consensus 113 s~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (610)
++|+|..++ ..+..+++|+.|+|++|.++.+....|..+++|+.|+|++|.+....
T Consensus 120 s~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 999999886 45788999999999999999999888999999999999999987653
No 240
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.51 E-value=2.1e-14 Score=147.83 Aligned_cols=191 Identities=9% Similarity=-0.040 Sum_probs=109.4
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCC-----------CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPE-----------PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLF 327 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~-----------p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~ 327 (610)
|..........+.+.+|+.+.|.|.+.|.|. |.|.|++++............ ..........+.|.|.
T Consensus 6 c~~~~~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~ 84 (349)
T 4dep_C 6 CDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFR-LPENRISKEKDVLWFR 84 (349)
T ss_dssp CEEEEECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCC-CGGGCEEEETTEEEES
T ss_pred ccccccceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCccccccccc-ccCceEeecCCEEEEc
Confidence 4333444456788999999999999997664 999999987421100000000 0001111234589999
Q ss_pred ecCCCCCeEEEEEeecCCcceeEEEEEEcCcccccc-ccccCCcceeehhhhHHHHHHHH-----HhheeEEEEEEeeec
Q psy10487 328 NVTDLDAGEYTCYAENIRGNASGEISLDLPEINLAT-TLSKTDSWYMLVLGISVCVVSVI-----VSIGMSFCVCRAHEH 401 (610)
Q Consensus 328 ~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 401 (610)
+++.+|+|.|+|.|.|..|.....+.|.|....... .....+....+..+..+.+.|.+ .+.+...+.|.+.+.
T Consensus 85 ~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~ 164 (349)
T 4dep_C 85 PTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY 164 (349)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTE
T ss_pred cCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCE
Confidence 999999999999999999998888888885422111 01111111222222211111110 111222222222211
Q ss_pred ccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCC-cce---eeeeeccccc
Q psy10487 402 KNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQ-PDM---ELIEQSLAME 459 (610)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~-G~~---~~~~~l~v~~ 459 (610)
+- .....+...+..|.|.+++.+|+|.|+|.|.|.. |.. +....+.+..
T Consensus 165 ~l---------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~ 217 (349)
T 4dep_C 165 KI---------QNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG 217 (349)
T ss_dssp EC---------CSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred EC---------CCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence 10 1112223344679999999999999999999987 553 4555555544
No 241
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.51 E-value=2.5e-14 Score=117.17 Aligned_cols=89 Identities=18% Similarity=0.319 Sum_probs=73.8
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
+|.|...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++ ..+..... .... ...+.|.|.+++.+|+|.|
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~--~~~~------~~~~~L~i~~~~~~D~G~Y 73 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL--VDAK------SSTTSIFFPSAKRADSGNY 73 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSE--EEEE------TTEEEEECTTBCGGGCEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEE--EEec------CCEEEEEECCCChhcCEEE
Confidence 567766777888999999999999999999999999999 77654321 1111 1235899999999999999
Q ss_pred EEEeecCCcceeEEEEEEc
Q psy10487 338 TCYAENIRGNASGEISLDL 356 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V 356 (610)
+|.|.|..|.++.++.|.|
T Consensus 74 ~C~a~N~~G~~~~~~~l~V 92 (93)
T 1wit_A 74 KLKVKNELGEDEAIFEVIV 92 (93)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEcCCCeEEEEEEEEE
Confidence 9999999999999998887
No 242
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.50 E-value=5.4e-15 Score=148.98 Aligned_cols=205 Identities=15% Similarity=0.106 Sum_probs=123.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceee-----eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI-----KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~-----~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~ 305 (610)
.+.+.|+|.+.+..+.. ...+... +..+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....
T Consensus 72 ~d~G~Y~C~a~n~~g~~-~~~~~l~-V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~ 149 (305)
T 2nzi_A 72 DDATVYQVRATNQGGSV-SGTASLE-VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG 149 (305)
T ss_dssp GGCSEEEEEEEETTEEE-EEEEEEE-ECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSS
T ss_pred hhCeEEEEEEEcCCCCc-cceEEEE-EecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCC
Confidence 46788999987654321 1111111 112333322 2245678899999999999999999999999998876554
Q ss_pred ccceeeccCCceeeeeeEEEEEe-cCCCCCeEEEEEeecCCcceeEEEEEEcCcccccccccc----CCcceeehhhhHH
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFN-VTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSK----TDSWYMLVLGISV 380 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~----~~~~~~~~~~~~~ 380 (610)
+....... ..+.|.|.+ ++.+|+|.|+|.|.|..|.....+.|.|...+.+|.... ......+......
T Consensus 150 ~~~~~~~~------~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~ 223 (305)
T 2nzi_A 150 HYQVIVTR------SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPA 223 (305)
T ss_dssp SCEEEECS------SEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCS
T ss_pred cEEEEEcC------CceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCc
Confidence 32222111 235899999 999999999999999999999999999865544433211 1111111000000
Q ss_pred HHHHHHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487 381 CVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS 455 (610)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 455 (610)
......+..|....+......|.. ... .....|.|.++...|.|.|.|.|.|..|..+.+...
T Consensus 224 ----~~g~~~i~~y~v~~~~~~~~~w~~---~~~-----~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~ 286 (305)
T 2nzi_A 224 ----SDGGSKITNYIVEKCATTAERWLR---VGQ-----ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPS 286 (305)
T ss_dssp ----CCSBSCEEEEEEEEEETTSCCEEE---EEE-----ESSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCC
T ss_pred ----cCCCCceeEEEEEEecCCCCccEE---Ccc-----ccCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCC
Confidence 000001112222222222222211 111 125578999999999999999999999987655443
No 243
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.50 E-value=2.2e-14 Score=148.72 Aligned_cols=191 Identities=14% Similarity=0.074 Sum_probs=119.2
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEe-----cCCCeEEEEeCCEEeccC-
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-----DPEPTILWLLNGQVLHNS- 304 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-----~P~p~v~W~~~g~~l~~~- 304 (610)
.+.+.|+|.+.+... .....+..... .+|.. +....+.+|+.+.|.|.+.| .|.|.+.|+++|..+...
T Consensus 152 ~d~G~Y~C~a~~~~~-~~~~~~~l~v~-~~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~ 226 (363)
T 1wio_A 152 QDSGTWTCTVLQNQK-KVEFKIDIVVL-AFQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSW 226 (363)
T ss_dssp GGCEECEEEEEETTE-EEEECCEECEE-CCSCS---EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCE
T ss_pred hcCCEEEEEEecCCC-eEEEEEEEEEe-cCCCC---CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceE
Confidence 467889998865422 11112222111 22322 25667889999999998887 889999999999877652
Q ss_pred ------Cccceeec-cCC--ceeee--eeEEEEEecCCCCCeEEEEEeecC--CcceeEEEEEEcCccccccccccCCcc
Q psy10487 305 ------SFDLLEEE-EGD--ALFEK--SVSITLFNVTDLDAGEYTCYAENI--RGNASGEISLDLPEINLATTLSKTDSW 371 (610)
Q Consensus 305 ------~~~~~~~~-~~~--~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~--~G~~~~~~~L~V~~~~~~p~~~~~~~~ 371 (610)
........ ..+ ..... ...|.|.+++.+|+|.|+|.|.|. .|.....+.|.|.... ..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~------g~~-- 298 (363)
T 1wio_A 227 ITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT------QLQ-- 298 (363)
T ss_dssp EEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEEC------CCS--
T ss_pred EEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEec------CCC--
Confidence 11111100 000 00001 238999999999999999999999 9999999999884211 000
Q ss_pred eeehhhhHHHHHHHHHhheeEEEEEEeeeccccc-ccccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487 372 YMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKR-RKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME 450 (610)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 450 (610)
+.+.|...+.+.+. ...|.+.+..+. ....|.|.+++.+|+|.|+|.|.|. |...
T Consensus 299 --------------------~~l~C~~~g~p~p~~~i~W~~~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~ 354 (363)
T 1wio_A 299 --------------------KNLTCEVWGPTSPKLMLSLKLENKEAK---VSKREKAVWVLNPEAGMWQCLLSDS-GQVL 354 (363)
T ss_dssp --------------------SSEEEEEESSCCTTCCEEEECSSSSCS---EEESSSEEEESSCCSEEEEEEECSS-SSCC
T ss_pred --------------------eeEEEEEccccCCCccEEEEeCCCcee---eeeeeeeeeeccccceeEEEEEecC-CeEE
Confidence 12344433332221 133444443332 3557899999999999999999974 5566
Q ss_pred eeeecccc
Q psy10487 451 LIEQSLAM 458 (610)
Q Consensus 451 ~~~~l~v~ 458 (610)
.++.+.|+
T Consensus 355 ~~~~~~V~ 362 (363)
T 1wio_A 355 LESNIKVL 362 (363)
T ss_dssp EEEEEEEC
T ss_pred EecceEec
Confidence 66666553
No 244
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.50 E-value=1.1e-14 Score=143.88 Aligned_cols=186 Identities=12% Similarity=0.062 Sum_probs=110.8
Q ss_pred CCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccC
Q psy10487 235 PLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314 (610)
Q Consensus 235 ~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~ 314 (610)
.|+|.+.+..+... ..+.......++ ..+......+.+|+.++|.|.+. |.|.++| +|..+....
T Consensus 75 ~Y~C~a~n~~~~~~-~~~~l~V~~~p~-p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~--------- 139 (265)
T 2oz4_A 75 RLTCAVILGNQSQE-TLQTVTIYSFPA-PNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG--------- 139 (265)
T ss_dssp EEEEEEEETTEEEE-EEEEEEEECCCC-CEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS---------
T ss_pred eEEEEEecCCCCcE-EEEEEEEeCCCC-ceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC---------
Confidence 59998876554321 222222222222 22335566788899999999998 9999999 777663211
Q ss_pred CceeeeeeEEEEEecCCCCCeEEEEEeecCC-ccee---EEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhe
Q psy10487 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIR-GNAS---GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIG 390 (610)
Q Consensus 315 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~-G~~~---~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (610)
..+.|.|..+..+|.|.|+|.|.|.. |... ..+.|.|...+.. .....+....+..+..+.+.|.+
T Consensus 140 -----~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~-~~~~~p~~~~v~~g~~~~l~C~~---- 209 (265)
T 2oz4_A 140 -----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL-DERDCPGNWTWPENSQQTPMCQA---- 209 (265)
T ss_dssp -----SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEEC-CGGGSCSEEEEETTCEECCCCCC----
T ss_pred -----CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCcc-ccccCCCccEEcCCCeEEEEeEC----
Confidence 12478899999999999999998644 7665 6777777433222 11222222223222222222221
Q ss_pred eEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 391 MSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
...+.+...|.+.+. .. ...+.+ ..++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus 210 ------~g~P~p~i~W~~~~~---~~---~~~g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 210 ------WGNPLPELKCLKDGT---FP---LPIGES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp ------EEESCCEEEEEETTT---EE---CCTTSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ------ccCCCCeEEEEECCc---cc---CCCCcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 222222223333222 11 111222 35888999999999999999999988887753
No 245
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.50 E-value=7.9e-14 Score=115.44 Aligned_cols=94 Identities=31% Similarity=0.459 Sum_probs=78.0
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+............+ ....|.|.+++.+|+|.|+
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~ 78 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG-----GLCRLRILAAERGDAGFYT 78 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGG-----GEEEEEESSCCGGGCEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCC-----CEEEEEEccCCcCCCEEEE
Confidence 36778888888899999999999999999999999999999887654322222111 1237999999999999999
Q ss_pred EEeecCCcceeEEEEEEcC
Q psy10487 339 CYAENIRGNASGEISLDLP 357 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~ 357 (610)
|.|.|..|.....+.|.|.
T Consensus 79 C~a~N~~g~~~~~~~l~V~ 97 (99)
T 1u2h_A 79 CKAVNEYGARQCEARLEVR 97 (99)
T ss_dssp EEEEETTEEEEEEEEEEEE
T ss_pred EEEEECCCceeEEEEEEEE
Confidence 9999999999999998884
No 246
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.50 E-value=4.9e-14 Score=133.16 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=99.0
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+. ..+.+|++++|.|.+.+ |.+.+.|+|+|..+......... ... ...+.|.|.+++.+|+|.|+|
T Consensus 8 ~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~-~~~----~~~~~l~I~~v~~~D~G~Y~C 80 (201)
T 1nkr_A 8 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEH-HDG----VSKANFSISRMTQDLAGTYRC 80 (201)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEE-ETT----EEEEEEEESSCCGGGCEEEEE
T ss_pred CCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeec-CCC----CceEEEEeccCCcccCeEEEE
Confidence 577776665 67889999999999974 78899999998765432111000 000 234689999999999999999
Q ss_pred EeecCCc-----ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccc
Q psy10487 340 YAENIRG-----NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQ 414 (610)
Q Consensus 340 ~a~N~~G-----~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (610)
.|.|..+ ..+..+.|.|.+...+|.+...+......+ .. +...|...... .+..|.+++.
T Consensus 81 ~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G-~~------------v~L~C~~~~~~--~~~~w~k~g~ 145 (201)
T 1nkr_A 81 YGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAG-EN------------VTLSCSSRSSY--DMYHLSREGE 145 (201)
T ss_dssp EEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTT-CE------------EEEEEEESSCC--SEEEEEETTC
T ss_pred eEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCC-Ce------------EEEEEeCCCCC--ceEEEEECCc
Confidence 9987532 235567777755444455544333222221 11 13344333211 1112222222
Q ss_pred cccc---------cccccceeeeeeeeccCcceeeeecCC
Q psy10487 415 SVSF---------NDQEKKLLDVSITTTDRHTGSCEALGS 445 (610)
Q Consensus 415 ~~~~---------~~~~~~L~i~~v~~~D~G~Y~C~A~N~ 445 (610)
.+.. ...+..|.|.+++ |+|.|+|.|.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 146 AHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp SSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred ccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 1110 1125689999998 999999999875
No 247
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.50 E-value=4.6e-14 Score=141.16 Aligned_cols=169 Identities=14% Similarity=0.104 Sum_probs=104.0
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|++++|.|.+.| .+.|++++..+. ... ...+.|.|.+++.+|+|.|+
T Consensus 11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~------~~~-------~~~~~L~i~~~~~~d~G~Y~ 73 (290)
T 2o26_X 11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE------MVE-------NKKNEWIQEKAEATRTGTYT 73 (290)
T ss_dssp -CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC------EEE-------ECSSEEEETTCCGGGCEEEE
T ss_pred CCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee------eec-------CCCceEEEeccCHHhCeEEE
Confidence 4677777788889999999999999988 899999987661 000 11158999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhhee-EEEEEEeeecccccccccCCcccccc
Q psy10487 339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGM-SFCVCRAHEHKNKRRKRKGKMKQSVS 417 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (610)
|.|.| |. ...+.|.|...+.. + .......+..+..+.+.|.+.+ +. ..+.|+++..... ......
T Consensus 74 C~~~n--g~-~~~~~l~V~~~~~~--~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l-------~~~~~~ 139 (290)
T 2o26_X 74 CSNSN--GL-TSSIYVFVRDPAKL--F-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSL-------PTDLTF 139 (290)
T ss_dssp EEESS--SC-EEEEEEEEECSSCC--B-CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCC-------CTTCEE
T ss_pred EEeeC--Cc-cEEEEEEEeCCCcc--c-ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCC-------CCCCce
Confidence 99999 55 66777777532221 1 2222222222222222222221 21 2233322211110 001111
Q ss_pred ccccccceeeeeeeeccCc-ceeeeecCCCcceee-eeecccc
Q psy10487 418 FNDQEKKLLDVSITTTDRH-TGSCEALGSQPDMEL-IEQSLAM 458 (610)
Q Consensus 418 ~~~~~~~L~i~~v~~~D~G-~Y~C~A~N~~G~~~~-~~~l~v~ 458 (610)
....++.|.|.+++.+|+| .|+|.|.|..|.... ...+.|.
T Consensus 140 ~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~ 182 (290)
T 2o26_X 140 VPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR 182 (290)
T ss_dssp EEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred eeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEE
Confidence 1233467999999999999 999999998665333 3455443
No 248
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=8e-14 Score=130.97 Aligned_cols=102 Identities=21% Similarity=0.317 Sum_probs=74.3
Q ss_pred EEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCcc
Q psy10487 85 RIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164 (610)
Q Consensus 85 ~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~ 164 (610)
.+++++|++..++... ..+|++|+|++|+|+.++ ..|.++++|+.|+|++|.|+.+.+..|.++++|+.|+|++|+
T Consensus 14 ~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3444444444443321 135666666666666665 456677777777777777777777778888888999999999
Q ss_pred ccccCHHHhhcCcccccccccccccc
Q psy10487 165 IHSVHKDALIHLTALESLNLNGNRLK 190 (610)
Q Consensus 165 l~~~~~~~~~~l~~L~~L~L~~n~l~ 190 (610)
|+.+.+..|..+++|+.|+|++|.|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 99998888999999999999999875
No 249
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.50 E-value=6.5e-15 Score=157.13 Aligned_cols=209 Identities=13% Similarity=0.092 Sum_probs=115.3
Q ss_pred CCCCCCCCCCCCccCCC--ccc--ccccc-cccCCCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEecc
Q psy10487 231 LYSHPLSCTEPGMLQTK--HWD--DVKAQ-EFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHN 303 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~--~~~--~v~~~-~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~ 303 (610)
.+.+.|.|.+.+..... ... .+... ....+|.+...+....+.+|+.++|.|.+.|. |.| .|.|++++..+..
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~ 168 (444)
T 1igt_B 89 EDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV 168 (444)
T ss_dssp GGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred HHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCe
Confidence 36788999887653221 001 11111 11234655544433445789999999999985 887 9999999876321
Q ss_pred CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc---------------ccccccc-cc
Q psy10487 304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE---------------INLATTL-SK 367 (610)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~---------------~~~~p~~-~~ 367 (610)
....... .. +.+...+.|.|.++..+| |.|+|.|.|..|.......+.+.+ ....|.+ ..
T Consensus 169 ~~~~~~~-~~--~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~ 244 (444)
T 1igt_B 169 HTFPAVL-QS--DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIF 244 (444)
T ss_dssp EECCCEE-ET--TEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEE
T ss_pred EecCccc-cC--CcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEec
Confidence 1111111 11 233445789999999999 999999999999876555544311 1111221 11
Q ss_pred CCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc------cccccccCCcccc----ccc------cccccceeeeeee
Q psy10487 368 TDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK------NKRRKRKGKMKQS----VSF------NDQEKKLLDVSIT 431 (610)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~------~~~~~~L~i~~v~ 431 (610)
.+.... .+.....+.+.|...+.+ ...|.+.+..-.. ... ....+.|.|.+++
T Consensus 245 ~p~~~~-----------~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 313 (444)
T 1igt_B 245 PPKIKD-----------VLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQD 313 (444)
T ss_dssp CCCHHH-----------HHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHH
T ss_pred CCchhh-----------eeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHH
Confidence 111100 011111123344433331 2334332211000 000 0123479999999
Q ss_pred eccCcceeeeecCCCcceeeeee
Q psy10487 432 TTDRHTGSCEALGSQPDMELIEQ 454 (610)
Q Consensus 432 ~~D~G~Y~C~A~N~~G~~~~~~~ 454 (610)
.+|+|.|+|.|.|..|.......
T Consensus 314 ~~d~G~Y~C~a~n~~~~~~~~~~ 336 (444)
T 1igt_B 314 WMSGKEFKCKVNNKDLPAPIERT 336 (444)
T ss_dssp HHTTCEEEEEEECTTCSSCEEEE
T ss_pred hccCCcEEEEEEcCCCCCceEEE
Confidence 99999999999999987643333
No 250
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7.1e-14 Score=116.03 Aligned_cols=91 Identities=25% Similarity=0.407 Sum_probs=77.1
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.......... ..+.|.|.+++.+|+|.|+
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~ 78 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ--------EQGTLQIKNLRISDTGTYT 78 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC--------TTCCEEEESCCTTTCCEEE
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc--------CCCEEEEccCCcccCEEEE
Confidence 47888888889999999999999999999999999999998876433222221 2248999999999999999
Q ss_pred EEeecCCcceeEEEEEEcC
Q psy10487 339 CYAENIRGNASGEISLDLP 357 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~ 357 (610)
|.|.|..|.....+.|.|.
T Consensus 79 C~a~n~~g~~~~~~~l~V~ 97 (100)
T 2edj_A 79 CVATSSSGETSWSAVLDVT 97 (100)
T ss_dssp EEEECSSCCCBCCEEEEEE
T ss_pred EEEEcCCCCEEEEEEEEEe
Confidence 9999999999999998884
No 251
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.49 E-value=1.7e-15 Score=151.47 Aligned_cols=202 Identities=12% Similarity=0.036 Sum_probs=112.7
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccC-C--Cceeeeec--ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFAC-P--PNVTIKES--MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c-~--P~i~~~~~--~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~ 305 (610)
.+.+.|+|.+.+..+...........+.- + |.+...+. .+.+.+|+.++|.|.+. .|.|.++|++++......
T Consensus 61 ~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~- 138 (289)
T 3mjg_X 61 LDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP- 138 (289)
T ss_dssp GGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC-
T ss_pred hhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc-
Confidence 36788999998766331111111111111 1 22212222 26788999999999998 788999999865211111
Q ss_pred ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEcCccccccccccCCcceeehhhhHHHHHH
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVS 384 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 384 (610)
...+... +.+ ...|+|.|+|.|.|..|... ..+.|.|... .+|.+...+....+..+..
T Consensus 139 ---~~~~~~~------~~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p~i~~~~~~~~v~~G~~----- 198 (289)
T 3mjg_X 139 ---VPYDHQR------GFS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-SSINVSVNAVQTVVRQGEN----- 198 (289)
T ss_dssp ---CCEETTT------EEE-----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-CCCCCEEEESCSEEETTSC-----
T ss_pred ---eeecCCc------Cee-----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-CCCCcEEeCCcceeEcCCC-----
Confidence 0001110 111 36799999999998887653 4466776543 3333333322222222222
Q ss_pred HHHhheeEEEEEEeeecc--cccccccCCcccc-cc---------ccccccceeeeeeeeccCcceeeeecCCCcceeee
Q psy10487 385 VIVSIGMSFCVCRAHEHK--NKRRKRKGKMKQS-VS---------FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI 452 (610)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~---------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 452 (610)
+.+.|.....+ ...|.+....... .. .......|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 199 -------v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 271 (289)
T 3mjg_X 199 -------ITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDE 271 (289)
T ss_dssp -------EEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEE
T ss_pred -------EEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeE
Confidence 13344433332 3334321111110 10 12344689999999999999999999999999999
Q ss_pred eecccccCC
Q psy10487 453 EQSLAMEQP 461 (610)
Q Consensus 453 ~~l~v~~~p 461 (610)
+.|.+...+
T Consensus 272 ~~l~v~~~~ 280 (289)
T 3mjg_X 272 KAINITVVE 280 (289)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEe
Confidence 999887643
No 252
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.49 E-value=3.3e-14 Score=133.60 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=102.2
Q ss_pred eecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccC---Ccc-c-e-eec---cCCceeeeeeEEEEEecCCCCCe
Q psy10487 266 KESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNS---SFD-L-L-EEE---EGDALFEKSVSITLFNVTDLDAG 335 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~---~~~-~-~-~~~---~~~~~~~~~~~L~I~~v~~~D~G 335 (610)
.+..+.+.+|++++|.|.+.+ .+.+.|.|++++..+... ... . . ..+ .++..+...+.|+|.+++.+|+|
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G 83 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence 356678899999999999975 556799999998655311 000 0 0 000 01111123468999999999999
Q ss_pred EEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec---ccccccccCCc
Q psy10487 336 EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH---KNKRRKRKGKM 412 (610)
Q Consensus 336 ~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 412 (610)
.|+|.|.|..|.....+.|.|.+....|.+...... ... +...+...|...+. +...|.+ .
T Consensus 84 ~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~--~~~-----------g~~~v~L~C~~~g~~p~p~i~W~~---~ 147 (193)
T 2if7_A 84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQL--FQN-----------MTCELHLTCSVEDADDNVSFRWEA---L 147 (193)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC-----C-----------SSEEEEEEEEEESCCTTCEEEEEE---T
T ss_pred eEEEEEEecCCCeEEEEEEEEEccCCCCeEecCcee--ecC-----------CCceEEEEEEEecCCCceEEEEEe---C
Confidence 999999999998777888888544333333322210 000 00012445554442 2333433 2
Q ss_pred cccccccccccceeeeeeeec-cCcceeeeecCCCcceeee
Q psy10487 413 KQSVSFNDQEKKLLDVSITTT-DRHTGSCEALGSQPDMELI 452 (610)
Q Consensus 413 ~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~A~N~~G~~~~~ 452 (610)
+..+ ..+..|.|.....+ |+|.|+|.|.|..|..+..
T Consensus 148 g~~l---~~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~ 185 (193)
T 2if7_A 148 GNTL---SSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFS 185 (193)
T ss_dssp TEEE---ESSSEEEEEECTTTCSCCEEEEEEEETTEEEEEE
T ss_pred CEEc---CCCCeEEEEeccCcCCCCcEEEEEECCCCccccc
Confidence 2221 22345777544444 8999999999999987554
No 253
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=3e-14 Score=131.74 Aligned_cols=132 Identities=23% Similarity=0.303 Sum_probs=115.2
Q ss_pred CCCCccEEEcccCCCcccchhhhcCCC-CCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccE
Q psy10487 79 GLLNLQRIYLKNSGIREVHRDTFKYLT-ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157 (610)
Q Consensus 79 ~l~~L~~L~L~~n~l~~i~~~~f~~l~-~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 157 (610)
.+.+|+.|++++|.+..++ . +..+. +|++|+|++|+|..+ ..|..+++|++|+|++|.++.+++..|..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 5789999999999999884 3 44444 999999999999988 56899999999999999999998777788999999
Q ss_pred EEccCccccccCH-HHhhcCccccccccccccccccCcc---cccCCCcccEEecCCCccc
Q psy10487 158 IELQHCQIHSVHK-DALIHLTALESLNLNGNRLKHLSES---VFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 158 L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~l~l~~N~~~ 214 (610)
|+|++|+|..++. ..+..+++|+.|++++|.+..++.. .+..+++|+.|++++|...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999988854 4788899999999999999988764 5778999999999988753
No 254
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=118.22 Aligned_cols=97 Identities=22% Similarity=0.318 Sum_probs=79.4
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
-+|.|...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+............++ ....|.|.+++.+|+|.|+
T Consensus 14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~ 89 (116)
T 2kkq_A 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT----GRVTLLIKDVNKKDAGWYT 89 (116)
T ss_dssp BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTT----CEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCC----CeEEEEECCCCcccCEEEE
Confidence 468888888999999999999999999999999999999998875332222222221 1238999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCcc
Q psy10487 339 CYAENIRGNASGEISLDLPEI 359 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~ 359 (610)
|.|.|..|.....+.|.|...
T Consensus 90 C~a~N~~G~~~~~~~l~V~~~ 110 (116)
T 2kkq_A 90 VSAVNEAGVTTCNTRLDVTAR 110 (116)
T ss_dssp EEEEETTEEEEEEEEEEEECC
T ss_pred EEEEcCCCeEEEEEEEEEeCC
Confidence 999999999999999988543
No 255
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.49 E-value=2.2e-14 Score=136.10 Aligned_cols=145 Identities=14% Similarity=0.179 Sum_probs=85.9
Q ss_pred eecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE
Q psy10487 272 REAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE 351 (610)
Q Consensus 272 v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 351 (610)
+.+|++++|.|.+ |.|.|.|+|+|..+.... ...+.|.|.+++.+|+|.|+|.+.|... . .
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~-------------~~~~~L~i~~v~~~DsG~Y~C~~~~~~s-~--~ 75 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT-------------EDKKKWNLGSNAKDPRGMYQCKGSQNKS-K--P 75 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEEE-------------SSCCCEEEEEGGGCCEEEEEEESSSSCC-C--C
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCCC-------------CCCCeEEeCCCCcCCCEEEEEEecCCCC-e--e
Confidence 3579999999998 889999999998875421 0124799999999999999999876432 2 2
Q ss_pred EEEEcCcc----------------------------ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccc
Q psy10487 352 ISLDLPEI----------------------------NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKN 403 (610)
Q Consensus 352 ~~L~V~~~----------------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (610)
+.|.|... ...+.+...+....+.+ . .+.+.|...+.+.
T Consensus 76 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G-~------------~v~L~C~g~p~p~ 142 (204)
T 1sy6_A 76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISG-T------------TVILTCPQYPGSE 142 (204)
T ss_dssp EEEEEEC------------------------------------CCCCEEEEET-T------------EEEEECSCCCSSC
T ss_pred EEEEEEEeccccccccccccccccccccccccccccccccceecCCceeeecC-C------------cEEEEcCCCCCCc
Confidence 33433200 00111111111111111 1 1233444333333
Q ss_pred ccccccCCcc----ccccccccccceeeeee-eeccCcceeeeecCCCcc
Q psy10487 404 KRRKRKGKMK----QSVSFNDQEKKLLDVSI-TTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 404 ~~~~~~~~~~----~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~A~N~~G~ 448 (610)
..|.+.+..- ........++.|.|.++ +.+|+|.|+|.|.|..|.
T Consensus 143 i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~ 192 (204)
T 1sy6_A 143 ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE 192 (204)
T ss_dssp EEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred eEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCC
Confidence 3333322110 01111224678999999 999999999999999996
No 256
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.49 E-value=1.2e-14 Score=143.08 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=102.9
Q ss_pred CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EE---eccC-CccceeeccCCcee-----eeeeEEEEEec
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QV---LHNS-SFDLLEEEEGDALF-----EKSVSITLFNV 329 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~---l~~~-~~~~~~~~~~~~~~-----~~~~~L~I~~v 329 (610)
..+...+..+.+.+|++++|.|.+.+.|.|.+.|++.. .. +... .........++... .....|+|.++
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 83 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV 83 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence 34566677889999999999999999999999999832 11 1000 00000000011000 12358999999
Q ss_pred CCCCCeEEEEEeecCCcc----eeEEEEEEcCc-----------------cccccccccCCcceeehhhhHHHHHHHHHh
Q psy10487 330 TDLDAGEYTCYAENIRGN----ASGEISLDLPE-----------------INLATTLSKTDSWYMLVLGISVCVVSVIVS 388 (610)
Q Consensus 330 ~~~D~G~Y~C~a~N~~G~----~~~~~~L~V~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (610)
+.+|+|.|.|.|.|..|. ....+.|.|.. ...++.+...+....+..+..+.+.|.+..
T Consensus 84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 163 (256)
T 3tf7_C 84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN 163 (256)
T ss_dssp CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence 999999999999998763 22345666643 223444444444444333333222222221
Q ss_pred heeEEEEEEeeec-cccccccc---------CCccccccc---cccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487 389 IGMSFCVCRAHEH-KNKRRKRK---------GKMKQSVSF---NDQEKKLLDVSITTTDRHTGSCEALGSQPDM 449 (610)
Q Consensus 389 ~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 449 (610)
. ...+.|.+... ........ ......+.. ......|.|.+++.+|+|.|+|.|.|..|..
T Consensus 164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 236 (256)
T 3tf7_C 164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQL 236 (256)
T ss_dssp C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEE
T ss_pred C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCcc
Confidence 1 11222222111 00000000 000011111 1234479999999999999999999987754
No 257
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=2.5e-14 Score=128.34 Aligned_cols=130 Identities=20% Similarity=0.186 Sum_probs=112.1
Q ss_pred CCCCccEEEcccCCCc-ccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccE
Q psy10487 79 GLLNLQRIYLKNSGIR-EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157 (610)
Q Consensus 79 ~l~~L~~L~L~~n~l~-~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 157 (610)
...+|+.|++++|.+. ...+..|..+++|++|++++|++..+ ..|..+++|++|+|++|.++...+..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3568999999999998 33345789999999999999999988 67899999999999999999865656667899999
Q ss_pred EEccCccccccC-HHHhhcCccccccccccccccccCc---ccccCCCcccEEecCC
Q psy10487 158 IELQHCQIHSVH-KDALIHLTALESLNLNGNRLKHLSE---SVFFPTPNLKTLSLDG 210 (610)
Q Consensus 158 L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~l~~ 210 (610)
|++++|+++.+. +..+..+++|+.|++++|.++.++. ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999874 3678899999999999999999887 5788889999998753
No 258
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.49 E-value=5.3e-14 Score=143.44 Aligned_cols=190 Identities=13% Similarity=0.067 Sum_probs=105.9
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEec----CCCeEEEEeCC--EEe--cc-----------CCccceeeccCCceee
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGD----PEPTILWLLNG--QVL--HN-----------SSFDLLEEEEGDALFE 319 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~----P~p~v~W~~~g--~~l--~~-----------~~~~~~~~~~~~~~~~ 319 (610)
+++.+...+..+.+.+|++++|.|.+.+. +.+.+.|++++ ... .. ....+...... ..
T Consensus 13 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~---~~ 89 (331)
T 3u83_A 13 DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRP---SF 89 (331)
T ss_dssp --------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSC---SS
T ss_pred CCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEeccc---CC
Confidence 45555566778899999999999999886 55679999954 211 00 00000110000 01
Q ss_pred eeeEEEEEecCCCCCeEEEEE-eecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEE-
Q psy10487 320 KSVSITLFNVTDLDAGEYTCY-AENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCR- 397 (610)
Q Consensus 320 ~~~~L~I~~v~~~D~G~Y~C~-a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 397 (610)
..+.|.|.+++.+|+|.|+|. +.|..|.....+.|.|...+.... ........+..+... -.+.+.|.
T Consensus 90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~-~~~~~~~~~~~g~~~---------~~~~l~C~~ 159 (331)
T 3u83_A 90 TDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWI-EGTQAVLRAKKGQDD---------KVLVATCTS 159 (331)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEE-EECSSCEEECTTCCC---------CEEEEEEEE
T ss_pred CCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCccee-ecCCCceeecCCCcc---------ceEEEEEEe
Confidence 235899999999999999998 677788888888888854322111 111222222211000 00122332
Q ss_pred ee--ecccccccccCCcccc-cccc------ccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 398 AH--EHKNKRRKRKGKMKQS-VSFN------DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 398 ~~--~~~~~~~~~~~~~~~~-~~~~------~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
.. +.+...|.+....... .... .....|.|..+..+|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus 160 ~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P 232 (331)
T 3u83_A 160 ANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEP 232 (331)
T ss_dssp EEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEE
T ss_pred cCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCC
Confidence 22 2223334332111000 0011 112346777778899999999999999998888888876543
No 259
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.49 E-value=2.6e-13 Score=133.96 Aligned_cols=160 Identities=15% Similarity=0.083 Sum_probs=103.5
Q ss_pred eEeecCceEEEEEEEEe-cCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEec---CCCCCeE--EEEEe
Q psy10487 270 VIREAGGNVTMSCYVYG-DPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV---TDLDAGE--YTCYA 341 (610)
Q Consensus 270 ~~v~~G~~v~l~C~~~g-~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v---~~~D~G~--Y~C~a 341 (610)
..+.+|+.++|.|.+.| .|.| .+.|+++|..+... ... .+ ..+.+..+ +.+|+|. |+|.|
T Consensus 13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~----~~~-~~-------~~~~~~~~~~~~~~d~g~g~Y~C~a 80 (265)
T 2oz4_A 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT----VTY-GN-------DSFSAKASVSVTAEDEGTQRLTCAV 80 (265)
T ss_dssp SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE----EEE-CS-------SEEEEEEEEEECGGGCEEEEEEEEE
T ss_pred ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce----Eee-CC-------CeEEEEeecccccccCCcceEEEEE
Confidence 36889999999999999 8887 99999999887641 111 11 24555544 7788885 99999
Q ss_pred ecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccccccc
Q psy10487 342 ENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQ 421 (610)
Q Consensus 342 ~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (610)
.|..|.....+.|.|...+. |.+..... ....+ .. +.+.|...+.+...| .+..+.....
T Consensus 81 ~n~~~~~~~~~~l~V~~~p~-p~~~~~~~-~v~~G-~~------------v~l~C~~~p~~~i~W-----~g~~~~~~~~ 140 (265)
T 2oz4_A 81 ILGNQSQETLQTVTIYSFPA-PNVILTKP-EVSEG-TE------------VTVKCEAHPRAKVTL-----NGVPAQPLGP 140 (265)
T ss_dssp EETTEEEEEEEEEEEECCCC-CEEEESCS-EEETT-CE------------EEEEEECCTTSEEEE-----SSCSSSCCSS
T ss_pred ecCCCCcEEEEEEEEeCCCC-ceeecCCc-eecCC-Cc------------EEEEEEccCCCEEEE-----CCEEccCCCC
Confidence 99999998888888854322 23332211 11111 11 233555443334444 2222333344
Q ss_pred ccceeeeeeeeccCcceeeeecCCC-ccee---eeeecccccCC
Q psy10487 422 EKKLLDVSITTTDRHTGSCEALGSQ-PDME---LIEQSLAMEQP 461 (610)
Q Consensus 422 ~~~L~i~~v~~~D~G~Y~C~A~N~~-G~~~---~~~~l~v~~~p 461 (610)
...|.|..+..+|.|.|+|.|.|.. |... ....|.|..+|
T Consensus 141 ~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p 184 (265)
T 2oz4_A 141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP 184 (265)
T ss_dssp EECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEE
T ss_pred cEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCC
Confidence 5678888888889999999998644 7765 55666665443
No 260
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.49 E-value=7.1e-14 Score=137.58 Aligned_cols=194 Identities=11% Similarity=0.060 Sum_probs=98.5
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEE---ecc-CC-ccceeec--cCCceee-----eeeEEEEEec
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQV---LHN-SS-FDLLEEE--EGDALFE-----KSVSITLFNV 329 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~---l~~-~~-~~~~~~~--~~~~~~~-----~~~~L~I~~v 329 (610)
.+..+.+.+|++++|.|.+.|.| .|.|.|+|+ +.. +.. .. ....... .++.... ....|+|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (257)
T 1f3r_B 6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL 85 (257)
T ss_dssp EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence 45566889999999999999986 789999985 221 110 00 0000000 0111111 1358999999
Q ss_pred CCCCCeEEEEEeecCCc-------c--eeEEEEEEcCccc------------cccccccCCcceeehhhhHHHHHHHHHh
Q psy10487 330 TDLDAGEYTCYAENIRG-------N--ASGEISLDLPEIN------------LATTLSKTDSWYMLVLGISVCVVSVIVS 388 (610)
Q Consensus 330 ~~~D~G~Y~C~a~N~~G-------~--~~~~~~L~V~~~~------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (610)
+.+|+|.|+|.|.|..| . ....+.|.|.... ..+.+...+....+..+..+.+.|.+.+
T Consensus 86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 165 (257)
T 1f3r_B 86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ 165 (257)
T ss_dssp CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS
T ss_pred CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC
Confidence 99999999999999865 1 1234567775432 1112222232222222222222222211
Q ss_pred heeEEEEEEeee-cccccccc------cCCccccccc--cccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 389 IGMSFCVCRAHE-HKNKRRKR------KGKMKQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 389 ~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
.+...+.|.+.. ........ .......... ......|.|.+++.+|+|.|+|.|.|..........|.|.+
T Consensus 166 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~ 245 (257)
T 1f3r_B 166 NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKA 245 (257)
T ss_dssp CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSS
T ss_pred cCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeC
Confidence 111122222211 00000000 0000011111 12334799999999999999999999752222233454544
No 261
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.49 E-value=9.8e-14 Score=115.10 Aligned_cols=94 Identities=28% Similarity=0.420 Sum_probs=78.2
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............. ....|.|.+++.+|+|.|+
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~ 78 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK-----GLHSLIFEVVRASDAGAYA 78 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETT-----TEEEEEESSCCGGGCEEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCC-----CeEEEEECCCCcccCEEEE
Confidence 35777777888899999999999999999999999999999887665433322221 1248999999999999999
Q ss_pred EEeecCCcceeEEEEEEcC
Q psy10487 339 CYAENIRGNASGEISLDLP 357 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~ 357 (610)
|.|.|..|..+.++.|.|.
T Consensus 79 C~a~n~~g~~~~~~~l~V~ 97 (100)
T 2kdg_A 79 CVAKNRAGEATFTVQLDVL 97 (100)
T ss_dssp EEEEETTEEEEEEEEEEEE
T ss_pred EEEEcCCCeEEEEEEEEEE
Confidence 9999999999999999884
No 262
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.48 E-value=1.5e-14 Score=144.51 Aligned_cols=171 Identities=17% Similarity=0.185 Sum_probs=103.8
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+..+.+.+|++++|.|.+.| .+.|++++..... .... ...+.|.|.+++.+|+|.|+|
T Consensus 4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~-----~~~~------~~~~~L~i~~~~~~d~G~Y~C 68 (289)
T 3ejj_X 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWT-----LDPE------SPGSTLTTRNATFKNTGTYRC 68 (289)
T ss_dssp CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSE-----ECCC------SSCCEEEESSCCGGGCEEEEE
T ss_pred CcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEE-----Eecc------CCccEEEEeeeccccCEEEEE
Confidence 456666677888999999999999987 4999987643211 0001 112589999999999999999
Q ss_pred EeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeeccc---ccccccCC---cc
Q psy10487 340 YAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKN---KRRKRKGK---MK 413 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~ 413 (610)
.|.|..|..+..+.|.|...+.. +...+....+..+..+ .+.|.....+. ..|.+... ..
T Consensus 69 ~~~~~~~~~~~~~~l~V~~~~~~--~~~~~~~~~v~~g~~v------------~L~C~~~~~~~~~~v~W~~~~~~~~~~ 134 (289)
T 3ejj_X 69 TELEDPMAGSTTIHLYVKDPAHS--WNLLAQEVTVVEGQEA------------VLPCLITDPALKDSVSLMREGGRQVLR 134 (289)
T ss_dssp ECCC-----CEEEEEEECCSSCS--EEESCSEEEEETTSCE------------EECEEESCGGGGGSEEEEEGGGEECCT
T ss_pred EEeccCCcceeEEEEEEeCCCcc--eecccceEEEecCCce------------EeEEEccCCCcceEEEEEecCCeecCC
Confidence 99999999888999998643322 2222222222222221 22333332222 12211100 00
Q ss_pred ccccccccccceeeeeeeeccCcceeeeec-CCCcceeeeeeccccc
Q psy10487 414 QSVSFNDQEKKLLDVSITTTDRHTGSCEAL-GSQPDMELIEQSLAME 459 (610)
Q Consensus 414 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~-N~~G~~~~~~~l~v~~ 459 (610)
........++.|.|.+++.+|+|.|+|.|. |..|..+....+.|.+
T Consensus 135 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~ 181 (289)
T 3ejj_X 135 KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR 181 (289)
T ss_dssp TCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEES
T ss_pred CccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEE
Confidence 111112345679999999999999999999 6666666667776664
No 263
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.48 E-value=1.4e-14 Score=151.39 Aligned_cols=205 Identities=14% Similarity=0.150 Sum_probs=124.7
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|.|.+.+..+.. ...+.+. +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.........
T Consensus 73 ~D~G~Y~C~a~n~~g~~-~~~~~l~-V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~ 150 (389)
T 2jll_A 73 SDSGRYDCEAASRIGGH-QKSMYLD-IEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLK 150 (389)
T ss_dssp GGCEEEEEEEECSSCEE-EEEEEEE-EEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEE
T ss_pred hhCEEEEEEEEeCCCCc-ceEEEEE-EEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEE
Confidence 46789999998766532 2222221 224566665555567889999999999999999999999999988765422221
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcccccccccc----CCcceeehhhhHHHHHHHH
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSK----TDSWYMLVLGISVCVVSVI 386 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~ 386 (610)
.... ...+.|.|.+++.+|+|.|+|.|.|..|.....+.+.|...+.+|.... ......+...... ..
T Consensus 151 ~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~----~~ 222 (389)
T 2jll_A 151 TYST----GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPD----SH 222 (389)
T ss_dssp EEEC----SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCS----CC
T ss_pred Eecc----CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCC----CC
Confidence 1111 1135899999999999999999999999998888888855544442110 0000000000000 00
Q ss_pred HhheeEEE-EEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceeeee
Q psy10487 387 VSIGMSFC-VCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIE 453 (610)
Q Consensus 387 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 453 (610)
.+.++..+ +.|++.. ... |. .+........+.|.++...|.|.|.|.|.|..|..+.+.
T Consensus 223 ~g~pi~~y~v~~~~~~-~~~---~~----~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~ 282 (389)
T 2jll_A 223 GGVPIHHYQVDVKEVA-SEI---WK----IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK 282 (389)
T ss_dssp TTSCEEEEEEEEEETT-CSC---CE----EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCC
T ss_pred CCcceEEEEEEEEECC-Ccc---cE----EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCc
Confidence 00011111 1111110 000 00 111112345789999999999999999999999765443
No 264
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.48 E-value=1.7e-14 Score=138.13 Aligned_cols=178 Identities=15% Similarity=0.146 Sum_probs=104.2
Q ss_pred ceEeecCceEEEEEEEEecCC-----CeEEEEeCCEEecc--CC---------ccceeeccCCceeeeeeEEEEEecCCC
Q psy10487 269 MVIREAGGNVTMSCYVYGDPE-----PTILWLLNGQVLHN--SS---------FDLLEEEEGDALFEKSVSITLFNVTDL 332 (610)
Q Consensus 269 ~~~v~~G~~v~l~C~~~g~P~-----p~v~W~~~g~~l~~--~~---------~~~~~~~~~~~~~~~~~~L~I~~v~~~ 332 (610)
.+.+.+|++++|.|.+.+.|. +.+.|++++..... .. ..+...... ......+.|.|.+++.+
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPD-LLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTT-TGGGTBCCEEECSCCGG
T ss_pred CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecc-cccCCeEEEEECCcccc
Confidence 456789999999999998865 78999997643210 00 000000000 00011458999999999
Q ss_pred CCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEe-e--eccccccccc
Q psy10487 333 DAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA-H--EHKNKRRKRK 409 (610)
Q Consensus 333 D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 409 (610)
|+|.|+|.+.|. +..+..+.|.|......|.+...+...... ...+.+.|.. . +.+...|.+.
T Consensus 83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~-------------G~~~~l~C~~~~g~P~~~v~W~~~ 148 (222)
T 4i0k_A 83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEPNKDLRP-------------GNMVTITCSSYQGYPEAEVFWKDG 148 (222)
T ss_dssp GCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC-----C-------------CSEEEEEEEEEEEBSCCEEEEECT
T ss_pred cCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCCCceecC-------------CceEEEEEecccccCCCeEEEEcC
Confidence 999999999986 455566677775444444443333211111 1112334443 2 2233334321
Q ss_pred C-Ccccc-c---ccccccc---ceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 410 G-KMKQS-V---SFNDQEK---KLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 410 ~-~~~~~-~---~~~~~~~---~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
. ..... . .....++ .|.|.+++.+|+|.|+|.|.|..|.....+.+.|.++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 208 (222)
T 4i0k_A 149 QGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP 208 (222)
T ss_dssp TSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred CCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence 1 10000 0 0011222 37899999999999999999999999999999887643
No 265
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=9.1e-14 Score=130.48 Aligned_cols=104 Identities=23% Similarity=0.360 Sum_probs=87.0
Q ss_pred cEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcc-cccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccC
Q psy10487 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQD-TFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162 (610)
Q Consensus 84 ~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~ 162 (610)
+.|++++|++..++...+ ..|++|+|++|+|..+.+. .|..+++|++|+|++|.++.+.+..|.++++|+.|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 455666666665554322 2678888888888888764 588899999999999999999888999999999999999
Q ss_pred ccccccCHHHhhcCcccccccccccccc
Q psy10487 163 CQIHSVHKDALIHLTALESLNLNGNRLK 190 (610)
Q Consensus 163 n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 190 (610)
|+|+.+.+..|..+++|+.|+|++|+|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 9999998888999999999999999875
No 266
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.48 E-value=8.3e-15 Score=139.97 Aligned_cols=178 Identities=12% Similarity=0.066 Sum_probs=96.9
Q ss_pred CceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCC---EE--ec-cCCccc-eeec--cCCcee---eeeeEEEEE
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNG---QV--LH-NSSFDL-LEEE--EGDALF---EKSVSITLF 327 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g---~~--l~-~~~~~~-~~~~--~~~~~~---~~~~~L~I~ 327 (610)
|.+...+ .+.+.+|++++|.|.+.+. |.+.+.|+|.. .. +. ...... .... .++... .....|.|.
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS 80 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence 3455556 7889999999999999999 99999999831 11 10 000000 0000 001000 123579999
Q ss_pred ecCCCCCeEEEEEeecCCc-----ceeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-
Q psy10487 328 NVTDLDAGEYTCYAENIRG-----NASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE- 400 (610)
Q Consensus 328 ~v~~~D~G~Y~C~a~N~~G-----~~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 400 (610)
+++.+|+|.|+|.|.|..| .....+.|.|.... .+|.+...+..... ..+ ..+.+.|...+
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~-----------~~~-~~v~L~C~~~g~ 148 (218)
T 3s96_B 81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEE-----------LKE-NKATLVCLISNF 148 (218)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHH-----------HHT-TEEEEEEEEEEE
T ss_pred cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCccc-----------ccC-CcEEEEEEECcc
Confidence 9999999999999999887 33445677774322 23333221111000 011 11233444333
Q ss_pred cc---cccccccCCccccccc-------ccccc------ceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487 401 HK---NKRRKRKGKMKQSVSF-------NDQEK------KLLDVSITTTDRHTGSCEALGSQPDMELIEQ 454 (610)
Q Consensus 401 ~~---~~~~~~~~~~~~~~~~-------~~~~~------~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 454 (610)
.+ ...|.+.+ ..+.. ...++ .|.+.....+|+|.|+|.|.|..|..+....
T Consensus 149 ~p~~~~v~W~k~g---~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~ 215 (218)
T 3s96_B 149 SPSGVTVAWKANG---TPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSLS 215 (218)
T ss_dssp BSSCCEEEEEETT---EEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEEC
T ss_pred cCCCeEEEEEECC---EECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccccc
Confidence 12 22333322 21110 01122 2555556666899999999999987766543
No 267
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.48 E-value=1.8e-14 Score=137.14 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=97.2
Q ss_pred CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEEEEecCCC
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSITLFNVTDL 332 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~ 332 (610)
|.+...+..+.+.+|++++|.|.+.|.|.|.+.|+|++ .. +............++.... ....|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECA 81 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChH
Confidence 45666678889999999999999999999999999842 11 1111000000000110111 2248999999999
Q ss_pred CCeEEEEEeecCCc---ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee---cccccc
Q psy10487 333 DAGEYTCYAENIRG---NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE---HKNKRR 406 (610)
Q Consensus 333 D~G~Y~C~a~N~~G---~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 406 (610)
|+|.|+|.|.|..| .....+.|.|.....+|.+........... +. .+...|...+ .+...|
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~-----------g~-~v~l~C~~~g~~P~~~v~W 149 (213)
T 3nl4_L 82 DAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVA-----------TG-TVTIVCVANKYFPDVTVTW 149 (213)
T ss_dssp GCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHT-----------TS-EEEEEEEEEEEBSCCEEEE
T ss_pred HCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhcc-----------CC-cEeEEEEEecccCCcEEEE
Confidence 99999999999887 334455666643333443332211111100 11 1233444333 233334
Q ss_pred cccCCcccc--------c----cccccccceeeeeeeeccCcceeeeec
Q psy10487 407 KRKGKMKQS--------V----SFNDQEKKLLDVSITTTDRHTGSCEAL 443 (610)
Q Consensus 407 ~~~~~~~~~--------~----~~~~~~~~L~i~~v~~~D~G~Y~C~A~ 443 (610)
.+.+..-.. . ........|.|..+..+|+|.|+|.|.
T Consensus 150 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 150 EVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp EETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred EeCCccCCCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 332211110 0 000112458888999999999999999
No 268
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=5.4e-14 Score=143.85 Aligned_cols=154 Identities=19% Similarity=0.312 Sum_probs=110.3
Q ss_pred CCccEEEeecCCCC--------------------CCChhhhcccC--------CCCccEEEcccCCCcccchhhhcCCCC
Q psy10487 55 SDIQVLDLNNNKIS--------------------YLTKEAFKSIG--------LLNLQRIYLKNSGIREVHRDTFKYLTI 106 (610)
Q Consensus 55 ~~L~~L~L~~n~i~--------------------~l~~~~~~~~~--------l~~L~~L~L~~n~l~~i~~~~f~~l~~ 106 (610)
.+|++|||++|+|. .|+..+|. + +.+|+.|+|.+ +++.|...+|.++.+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 46888888888888 56667776 6 88999999988 899999999999999
Q ss_pred CcEEEccCCCCCCCCcccccC-----------------------------------------------------------
Q psy10487 107 LVEVDLSDNQIAWLHQDTFLG----------------------------------------------------------- 127 (610)
Q Consensus 107 L~~LdLs~n~l~~l~~~~f~~----------------------------------------------------------- 127 (610)
|++|+|++|.+..+.+..|.+
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 999999988876655554433
Q ss_pred -------------------CCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccc-ccccccc
Q psy10487 128 -------------------NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE-SLNLNGN 187 (610)
Q Consensus 128 -------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n 187 (610)
+.+|+.|+|++|.++.+...+|.++.+|+.|+|.+| ++.+...+|.++.+|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 345666666666666666666666666666666665 6666666666666666 666666
Q ss_pred cccccCcccccCCCcccEEecCCCcc
Q psy10487 188 RLKHLSESVFFPTPNLKTLSLDGNPW 213 (610)
Q Consensus 188 ~l~~~~~~~~~~~~~L~~l~l~~N~~ 213 (610)
.++.+...+|..+.+|+.+++.+|.+
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred cceEEchhhhhCCccCCEEEeCCCcc
Confidence 56666666666666666666655543
No 269
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.47 E-value=2.2e-13 Score=113.94 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=68.2
Q ss_pred ecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEE
Q psy10487 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352 (610)
Q Consensus 273 ~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 352 (610)
..|+.+.|.|.+.|.|.|.++|+++|..+....+........ ......+.|.|.+++.+|+|.|+|.|.|..|.+++++
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 92 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT-NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI 92 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEE-CSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEec-CCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence 457789999999999999999999999988765421211111 0113456899999999999999999999999999999
Q ss_pred EEEcCc
Q psy10487 353 SLDLPE 358 (610)
Q Consensus 353 ~L~V~~ 358 (610)
.|.|.+
T Consensus 93 ~l~V~~ 98 (103)
T 1wwb_X 93 SAHFMG 98 (103)
T ss_dssp EECCSC
T ss_pred EEEECC
Confidence 999854
No 270
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.47 E-value=5.2e-14 Score=160.73 Aligned_cols=219 Identities=11% Similarity=0.028 Sum_probs=79.3
Q ss_pred CCCCCCCCCCCCccCCCccccccccccc-CCCceeeeec-ceEeecCceEEEEEEEEe--cCCCeEEEEeCCEEeccCCc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA-CPPNVTIKES-MVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSF 306 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~-c~P~i~~~~~-~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~g~~l~~~~~ 306 (610)
.+.+.|+|.+.+................ -++.+...+. ...+.+|+.++|.|.+.| .|.+.+.|++++..+.....
T Consensus 193 ~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~ 272 (772)
T 3v2a_R 193 SYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL 272 (772)
T ss_dssp TTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------C
T ss_pred hhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCcee
Confidence 3567899987643221111111111111 1244445444 468899999999999998 55678999999887654332
Q ss_pred cceeecc--CCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHH
Q psy10487 307 DLLEEEE--GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVS 384 (610)
Q Consensus 307 ~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 384 (610)
....... +.......+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.+.+.............+..+..+.+.|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C 352 (772)
T 3v2a_R 273 VNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPA 352 (772)
T ss_dssp EEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-----------------------
T ss_pred eeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEE
Confidence 1111100 00122455789999999999999999999999988888888885432111111111222333333444455
Q ss_pred HHHhheeEEEEEEeeecccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCcceee--eeeccccc
Q psy10487 385 VIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL--IEQSLAME 459 (610)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~--~~~l~v~~ 459 (610)
.+.+.+...+.|.+.+..... ... ......|.|.+++.+|+|.|+|.|.|..|.... ...+.|..
T Consensus 353 ~~~~~p~~~v~W~~~g~~l~~---------~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~ 419 (772)
T 3v2a_R 353 KYLGYPPPEIKWYKNGIPLES---------NHT-IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYV 419 (772)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEeeeCCCeEEEEECCEeCCC---------Cce-EccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEec
Confidence 444433323333222211110 001 113468999999999999999999999987654 34444543
No 271
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=8e-14 Score=117.97 Aligned_cols=100 Identities=27% Similarity=0.336 Sum_probs=80.0
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+.............+ ....|.|.+++.+|+|.|+
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~ 82 (110)
T 2dm2_A 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD----GTCSLHTTASTLDDDGNYT 82 (110)
T ss_dssp CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTT----CEEEEEESSCCTTTCSCCE
T ss_pred CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCC----cEEEEEECCCChhhCEEEE
Confidence 468888888889999999999999999999999999999988875432222222111 1237999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccc
Q psy10487 339 CYAENIRGNASGEISLDLPEINLA 362 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~ 362 (610)
|.|.|..|.....+.|.|.+...+
T Consensus 83 C~a~N~~g~~~~~~~l~V~~~~~~ 106 (110)
T 2dm2_A 83 IMAANPQGRISCTGRLMVQAVNSG 106 (110)
T ss_dssp EEEECTTCCEEECCCEEEECCSCC
T ss_pred EEEEECCCeEEEEEEEEEECCCCC
Confidence 999999999999999988654433
No 272
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.47 E-value=1.6e-13 Score=115.29 Aligned_cols=96 Identities=25% Similarity=0.402 Sum_probs=79.4
Q ss_pred cccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG 335 (610)
Q Consensus 256 ~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 335 (610)
.+..+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+....+....... ....|.|.+++.+|+|
T Consensus 9 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~D~G 82 (107)
T 3irg_B 9 DQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG------AEHGLLLTAALPTDAG 82 (107)
T ss_dssp -CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEET------TEEEEEESSCCGGGCE
T ss_pred CCCCCCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEEeCC------CEEEEEEccCCHHhCE
Confidence 3456788988889999999999999999999999999999999988765432221111 1238999999999999
Q ss_pred EEEEEeecCCcceeEEEEEEcC
Q psy10487 336 EYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 336 ~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
.|+|.|.|..|.....+.|.|.
T Consensus 83 ~Y~C~a~n~~g~~~~~~~l~V~ 104 (107)
T 3irg_B 83 VYVCRARNAAGEAYAAAAVTVL 104 (107)
T ss_dssp EEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEEEEEE
Confidence 9999999999999999999884
No 273
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.47 E-value=1.7e-13 Score=130.22 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=96.4
Q ss_pred ecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEe---ccCCccceeeccCCceee---eeeEEEEEecCCCCCeEEE
Q psy10487 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVL---HNSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l---~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~ 338 (610)
|..+.+.+|++++|.|.+.|.|.|.|.|+++ |..+ ............++.... ....|.|.+++.+|+|.|+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF 86 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence 7778899999999999999999999999984 2221 000000000000110111 1248999999999999999
Q ss_pred EEeecCCccee-EEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c---cccccccCCcc
Q psy10487 339 CYAENIRGNAS-GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K---NKRRKRKGKMK 413 (610)
Q Consensus 339 C~a~N~~G~~~-~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~ 413 (610)
|.|.|..|... ..+.|.|.....+|.+...+..... ..+. .+...|...+. + ...|.+.+..-
T Consensus 87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~-----------~~g~-~v~l~C~~~g~~p~~~~v~W~k~g~~~ 154 (210)
T 1lk3_L 87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQ-----------LATG-GASVVCLMNNFYPRDISVKWKIDGTER 154 (210)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHH-----------HTTT-EEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhh-----------ccCC-cEEEEEEEEeEeCCceEEEEEeCCccC
Confidence 99999887543 3446666543333433322211100 0111 12334444331 2 22343322210
Q ss_pred c-c------cccccc-----ccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 414 Q-S------VSFNDQ-----EKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 414 ~-~------~~~~~~-----~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
. . .....+ ...|.|..+..+|+|.|+|.|.|....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 155 RDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp CTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred CCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence 0 0 000111 126889999999999999999997664
No 274
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=1.6e-13 Score=141.57 Aligned_cols=152 Identities=16% Similarity=0.217 Sum_probs=131.6
Q ss_pred cEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCC-CCCCcccccCCCCCcE-EE
Q psy10487 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI-AWLHQDTFLGNDRLKV-LY 135 (610)
Q Consensus 58 ~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l-~~l~~~~f~~l~~L~~-L~ 135 (610)
++++.++++++.++.... .+|++|+|++|+|+.+++++|.++++|++|+|++|++ +.++...|.++++|+. +.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~-----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP-----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCSCCTTCC-----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCccCcCcC-----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 468899999999986543 4899999999999999999999999999999999998 4577888999998775 66
Q ss_pred eeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccc-ccccccCcccccCCC-cccEEecCCCcc
Q psy10487 136 LNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNG-NRLKHLSESVFFPTP-NLKTLSLDGNPW 213 (610)
Q Consensus 136 Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~-~L~~l~l~~N~~ 213 (610)
+.+|+++.+.+..|..+++|+.|++++|+|..+.+..+....++..|++.+ +.+..++...|..+. .++.|++++|.+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 778999999999999999999999999999999877776777788888865 688888887777764 578899999987
Q ss_pred c
Q psy10487 214 C 214 (610)
Q Consensus 214 ~ 214 (610)
.
T Consensus 167 ~ 167 (350)
T 4ay9_X 167 Q 167 (350)
T ss_dssp C
T ss_pred c
Confidence 5
No 275
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.46 E-value=2.5e-13 Score=112.30 Aligned_cols=93 Identities=20% Similarity=0.399 Sum_probs=77.6
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+....+.......+ ...|.|.+++.+|+|.|+
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~d~G~Y~ 78 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKG------GFFLEIHKTDTSDSGLYT 78 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETT------EEEEEECSCCGGGCEEEE
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCC------EEEEEECCCCcccCEEEE
Confidence 35778888888999999999999999999999999999999887654322221111 237999999999999999
Q ss_pred EEeecCCcceeEEEEEEcC
Q psy10487 339 CYAENIRGNASGEISLDLP 357 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~ 357 (610)
|.|.|..|.....+.|.|.
T Consensus 79 C~a~n~~g~~~~~~~l~V~ 97 (99)
T 3puc_A 79 CTVKNSAGSVSSSCKLTIK 97 (99)
T ss_dssp EEEEETTEEEEEEEEEEEE
T ss_pred EEEEeCCCcEeEEEEEEEE
Confidence 9999999999999998874
No 276
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.46 E-value=4.8e-15 Score=150.18 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=100.0
Q ss_pred cceEeecCceEEEEEEEEecC-CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487 268 SMVIREAGGNVTMSCYVYGDP-EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG 346 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 346 (610)
..+.+.+|+.+.|.|.+.|.| .|.+.|+|++..+...... ........+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~------~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 86 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQ------ASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY 86 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCT------TSSSEECSSBEECTTCCGGGCSCCEECCCSSSC
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCcccccc------CCcEeccCCeEEECCCChhhCEEEEEEEeCCce
Confidence 356788999999999999988 8899999998653221110 000112234899999999999999999999999
Q ss_pred ceeEEEEEEcCccccccccccCCc---ceeehhhhHHHHHHHH------HhheeEEEEEEeeecccccccccCCcccccc
Q psy10487 347 NASGEISLDLPEINLATTLSKTDS---WYMLVLGISVCVVSVI------VSIGMSFCVCRAHEHKNKRRKRKGKMKQSVS 417 (610)
Q Consensus 347 ~~~~~~~L~V~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (610)
.....+.+.+. ..+|.+...+. ...+..+..+.+.|.+ .+.+...+.|.+...+. ......
T Consensus 87 ~~~~~~~v~v~--~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l--------~~~~~~ 156 (315)
T 1itb_B 87 CLRIKISAKFV--ENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPL--------LLDNIH 156 (315)
T ss_dssp CCCEECCCEEE--CCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEEC--------CCCSSS
T ss_pred EEEEEEEEEEe--CCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEEC--------CCccce
Confidence 87776666652 22222211111 1111111111111111 11121122222211110 001112
Q ss_pred ccccccceeeeeeeeccCcceeeeec-CCCccee
Q psy10487 418 FNDQEKKLLDVSITTTDRHTGSCEAL-GSQPDME 450 (610)
Q Consensus 418 ~~~~~~~L~i~~v~~~D~G~Y~C~A~-N~~G~~~ 450 (610)
....++.|.|.+++.+|+|.|+|.|. |..|...
T Consensus 157 ~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~ 190 (315)
T 1itb_B 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY 190 (315)
T ss_dssp EEEETTEEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred EeecCceEEEEeceehhCcEEEEEEEcCCCCcEE
Confidence 33456689999999999999999999 7888763
No 277
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.46 E-value=2e-13 Score=113.00 Aligned_cols=94 Identities=22% Similarity=0.464 Sum_probs=76.1
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+............. ...+.|.|.+++.+|+|.|+|
T Consensus 5 pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C 80 (100)
T 3irg_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT----DDLTTLIIMDVQKQDGGLYTL 80 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEEC----SSEEEEEESSCCGGGCEEEEE
T ss_pred CCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEec----CCEEEEEEeecCcccCEEEEE
Confidence 5677777788899999999999999999999999999999886433222211111 113589999999999999999
Q ss_pred EeecCCcceeEEEEEEcC
Q psy10487 340 YAENIRGNASGEISLDLP 357 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~ 357 (610)
.|.|..|..+..+.|.|.
T Consensus 81 ~a~n~~g~~~~~~~l~V~ 98 (100)
T 3irg_A 81 SLGNEFGSDSATVNIHIR 98 (100)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCcEEEEEEEEEE
Confidence 999999999999998874
No 278
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.46 E-value=3.3e-13 Score=143.47 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=116.0
Q ss_pred CCCCCCCCCCCCccCCCcccccccccc---cCCCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccCC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSS 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~ 305 (610)
.+.+.|.|.+.+... ..-........ .-+|.+...+....+.+|+.++|.|.+.|. |.| .|.|++++..+....
T Consensus 88 ~D~G~Y~C~~~~~~~-~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~ 166 (434)
T 1igy_B 88 DDSAVYYCVREGEVP-YWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT 166 (434)
T ss_dssp GGCSEECCCCSSSSC-CCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEE
T ss_pred HHCEEEEEEEEcccc-ccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEe
Confidence 477899999876421 11111111111 134666544434456789999999999987 777 999999987532111
Q ss_pred ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcc---------cccccc-ccCCcceeeh
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI---------NLATTL-SKTDSWYMLV 375 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~---------~~~p~~-~~~~~~~~~~ 375 (610)
.. ..... +.+...+.|.|.+++.+| |.|+|.|.|..|.......+.+... ...|.+ ...+...
T Consensus 167 ~~-~~~~~--~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~--- 239 (434)
T 1igy_B 167 FP-AVLQS--DLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPK--- 239 (434)
T ss_dssp CC-CEECS--SCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHH---
T ss_pred cC-ceecC--CcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChH---
Confidence 10 01111 233445789999999999 9999999999998655555543210 000111 1111100
Q ss_pred hhhHHHHHHHHHhheeEEEEEEeeecc---cccccccCCcccccc---------cc----ccccceeeeeeeeccCccee
Q psy10487 376 LGISVCVVSVIVSIGMSFCVCRAHEHK---NKRRKRKGKMKQSVS---------FN----DQEKKLLDVSITTTDRHTGS 439 (610)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~----~~~~~L~i~~v~~~D~G~Y~ 439 (610)
..+.....+.+.|...+.+ ......|.+.+..+. .. .....|.|.++..+|+|.|+
T Consensus 240 --------~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 311 (434)
T 1igy_B 240 --------DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFK 311 (434)
T ss_dssp --------HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCB
T ss_pred --------HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEE
Confidence 0011122224455544432 111223333222211 00 12346899999999999999
Q ss_pred eeecCCCcceeeeee
Q psy10487 440 CEALGSQPDMELIEQ 454 (610)
Q Consensus 440 C~A~N~~G~~~~~~~ 454 (610)
|.|.|..|.......
T Consensus 312 C~a~n~~~~~~~~~~ 326 (434)
T 1igy_B 312 CRVNSAAFPAPIEKT 326 (434)
T ss_dssp CCBCCSSCSSCCCCC
T ss_pred EEEECCCCCCceeEE
Confidence 999999997544333
No 279
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.46 E-value=1.1e-13 Score=120.61 Aligned_cols=111 Identities=28% Similarity=0.574 Sum_probs=89.9
Q ss_pred CCCCCCeeCccCCCcEEEcCCCCCC--ccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhh
Q psy10487 23 DCPDTCRCKWTLGKKSALCKDANFT--ALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100 (610)
Q Consensus 23 ~Cp~~C~C~~~~~~~~~~C~~~~l~--~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~ 100 (610)
+||..|.|. ...|+|++++|+ ++|..++.+++.|+|++|+|+.++.+.|. .+.+|+.
T Consensus 1 ~CP~~C~C~----~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~--------------- 59 (130)
T 3rfe_A 1 PCPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLD--ALPALRT--------------- 59 (130)
T ss_dssp CCCTTCEEE----TTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGG--GCTTCCE---------------
T ss_pred CcCCCCEEc----CCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhh--hccccCE---------------
Confidence 599999997 369999999999 99988888888888888877777655544 2222221
Q ss_pred hcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccc
Q psy10487 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE 180 (610)
Q Consensus 101 f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (610)
T Consensus 60 -------------------------------------------------------------------------------- 59 (130)
T 3rfe_A 60 -------------------------------------------------------------------------------- 59 (130)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCcccccCCCcccEEecCCCcccccCCchhhHHHHhhcc--CCCCCCCCCCCCccCCCccccccccccc
Q psy10487 181 SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSK--LYSHPLSCTEPGMLQTKHWDDVKAQEFA 258 (610)
Q Consensus 181 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~l~~~~--l~~~~~~C~a~~~l~g~~~~~v~~~~~~ 258 (610)
|+|.+|+|.|||.+.||..|+.... .....++|..|..+.|+.+.++...++.
T Consensus 60 -------------------------L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~l~ 114 (130)
T 3rfe_A 60 -------------------------AHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELR 114 (130)
T ss_dssp -------------------------EECCSSCCBCSGGGHHHHHHHHTSSCSGGGTTCBCCBSTTTTTCBGGGCCHHHHH
T ss_pred -------------------------EEecCCCeeccCccHHHHHHHHhCcccccccCcEeCcChHHcCCCcccCCHHHhh
Confidence 4788999999999999999998653 3456789999999999999999988887
Q ss_pred C
Q psy10487 259 C 259 (610)
Q Consensus 259 c 259 (610)
|
T Consensus 115 c 115 (130)
T 3rfe_A 115 A 115 (130)
T ss_dssp H
T ss_pred C
Confidence 4
No 280
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.7e-14 Score=119.12 Aligned_cols=93 Identities=24% Similarity=0.410 Sum_probs=78.1
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+......... ...+.|.|.+++.+|+|.|+
T Consensus 7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~ 78 (118)
T 2eo9_A 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQ--------LENGVLQIRYAKLGDTGRYT 78 (118)
T ss_dssp CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEE--------EETTEEEEESCCGGGCCCEE
T ss_pred CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEE--------ccCCEEEEccCCcCCCEEEE
Confidence 5788888888899999999999999999999999999999887643322211 22348999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCcc
Q psy10487 339 CYAENIRGNASGEISLDLPEI 359 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~ 359 (610)
|.|.|..|.....+.|.|.+.
T Consensus 79 C~a~n~~g~~~~~~~l~V~~~ 99 (118)
T 2eo9_A 79 CIASTPSGEATWSAYIEVQEF 99 (118)
T ss_dssp EEEECSSCEEEEECCEEEECC
T ss_pred EEEEcCCCcEEEEEEEEEEeC
Confidence 999999999998888888543
No 281
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.45 E-value=2.8e-13 Score=138.04 Aligned_cols=178 Identities=18% Similarity=0.156 Sum_probs=101.6
Q ss_pred CCCceeeeecceEeecC--ceEEEEEEEEec-C-CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487 259 CPPNVTIKESMVIREAG--GNVTMSCYVYGD-P-EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G--~~v~l~C~~~g~-P-~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 334 (610)
.+|.+.+.+.......| +.++|.|.+.|. | .+.|+|+|+|..+............ ++.+...+.|.|..+..+|+
T Consensus 6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~-~g~~~~~s~l~i~~~~~~d~ 84 (323)
T 2wqr_A 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQE-GELASTQSELTLSQKHWLSD 84 (323)
T ss_dssp CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEE-TTEEEEEEEEEEEHHHHHTT
T ss_pred CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCcc-CCcEEEEEEEEEcHHHcCCC
Confidence 35777766544333344 699999999986 4 4799999999988754321111111 23344556899999888999
Q ss_pred eEEEEEeecCCcceeEEEEEEcCcccccccc-ccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec---c---ccccc
Q psy10487 335 GEYTCYAENIRGNASGEISLDLPEINLATTL-SKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH---K---NKRRK 407 (610)
Q Consensus 335 G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~ 407 (610)
|.|+|+|.|..|.....+.+.+......|.+ ...+.... +..+. .+.+.|...+. + ...|.
T Consensus 85 g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~-----------v~~G~-~v~L~C~~~g~~P~p~~~~i~W~ 152 (323)
T 2wqr_A 85 RTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFD-----------LFIRK-SPTITCLVVDLAPSKGTVQLTWS 152 (323)
T ss_dssp CCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHH-----------HHTSS-CCEEEEEEEEECCCSSCCEEEEE
T ss_pred CcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHH-----------hccCC-eEEEEEEEeccCCCCCceEEEEE
Confidence 9999999999887665544322111112211 11121111 11111 12334443332 1 23343
Q ss_pred ccC-Ccccc-cc-----cc---ccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487 408 RKG-KMKQS-VS-----FN---DQEKKLLDVSITTTDRHTGSCEALGSQPDM 449 (610)
Q Consensus 408 ~~~-~~~~~-~~-----~~---~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 449 (610)
+.. ..... .. .. ...+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus 153 k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~ 204 (323)
T 2wqr_A 153 RASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR 204 (323)
T ss_dssp ETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred ECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCC
Confidence 321 10000 00 00 123469999999999999999999987543
No 282
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.45 E-value=5.6e-13 Score=134.96 Aligned_cols=182 Identities=14% Similarity=0.079 Sum_probs=100.8
Q ss_pred eeeeecceEeecCceEEEEEEEEecCCC-----eEEEEeCCEEeccCC------------ccceeeccCCceeeeeeEEE
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDPEP-----TILWLLNGQVLHNSS------------FDLLEEEEGDALFEKSVSIT 325 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p-----~v~W~~~g~~l~~~~------------~~~~~~~~~~~~~~~~~~L~ 325 (610)
+...|..+.+..|++++|.|.+.+.|.+ .|.|+|++....... .+..............++|+
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~ 82 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence 3445677888999999999999998876 489999875322100 00000000000112335799
Q ss_pred EEecCCCCCeEEEEEee-cCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEee---ec
Q psy10487 326 LFNVTDLDAGEYTCYAE-NIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAH---EH 401 (610)
Q Consensus 326 I~~v~~~D~G~Y~C~a~-N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 401 (610)
|.+++.+|+|.|+|.|. +..|..+..+.|.|... |..........+..... ....|... +.
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~---P~~~~~~~~~~~~~~~~------------~~~~C~~~~~~P~ 147 (313)
T 4fqp_A 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK---PQNTAEVQKVQLTGEPV------------PMARCVSTGGRPP 147 (313)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBC---CEEEEEECCBCCCSSCE------------EEEEEEEEEEBSC
T ss_pred ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccC---CcceecccceEeecCce------------EEEEEEccCccCC
Confidence 99999999999999885 45667777888877432 22221111111111111 12222221 22
Q ss_pred ccccccccCCcccc--cccc------ccccceeeeeeeeccCcceeeeecCCCcceee--eeeccccc
Q psy10487 402 KNKRRKRKGKMKQS--VSFN------DQEKKLLDVSITTTDRHTGSCEALGSQPDMEL--IEQSLAME 459 (610)
Q Consensus 402 ~~~~~~~~~~~~~~--~~~~------~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~--~~~l~v~~ 459 (610)
+...|.+....-.. .... .....|.|..+..+|.|.|+|.|.|..|.... ...|.|..
T Consensus 148 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~ 215 (313)
T 4fqp_A 148 AQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY 215 (313)
T ss_dssp CEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCE
T ss_pred cEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeeccccc
Confidence 22223222111000 0000 11234778888888999999999998776544 34555544
No 283
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.45 E-value=1.2e-13 Score=127.18 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=95.9
Q ss_pred cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee-ec--cCCcee-eeeeEEEEEecCCCCCeEEEEEeec
Q psy10487 268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE-EE--EGDALF-EKSVSITLFNVTDLDAGEYTCYAEN 343 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~-~~--~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N 343 (610)
..+.+.+|++++|.|.+.+ |.+.|.|++++..+......... .. .++..+ ...+.|+|.+++.+|+|.|+|.|.|
T Consensus 3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n 81 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81 (171)
T ss_dssp EEEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred cEEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence 3567889999999999854 89999999988755332111110 00 011011 1346899999999999999999999
Q ss_pred CCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccccccccc
Q psy10487 344 IRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEK 423 (610)
Q Consensus 344 ~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (610)
..| ...+.|.|.+....|.+...... . ...|.....+.+ ...|.+.+..+.. ..
T Consensus 82 ~~~--~~~~~L~V~~~~~~p~i~~~~~~--------~------------~L~C~~~~~p~p-~i~W~~~~~~l~~-~~-- 135 (171)
T 1ccz_A 82 ITD--TMKFFLYVLEMVSKPMIYWECSN--------A------------TLTCEVLEGTDV-ELKLYQGKEHLRS-LR-- 135 (171)
T ss_dssp CCS--CEEEEEEEECCCCCCEEEEETTT--------T------------EEEEECSSCSSC-EEEEEETTEEEEE-ES--
T ss_pred CCC--cEEEEEEEECcCCCCEEEEecCC--------c------------EEEEEeCCCCCc-EEEEEECCEECcC-Cc--
Confidence 988 67777877544333333221110 0 123433332221 1223222222211 11
Q ss_pred ceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487 424 KLLDVSITTTDRHTGSCEALGSQPDMELIEQSL 456 (610)
Q Consensus 424 ~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 456 (610)
.+.+......|.|.|+|+|.|..|..+..+.+.
T Consensus 136 ~~~l~~~~~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 136 QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp SSEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred ceEEEEeccCCCceEEEEEEcccCcccceeEEe
Confidence 122222235688999999999999987766653
No 284
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.45 E-value=2.2e-14 Score=143.42 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=103.3
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.|...+..+.+.+|++++|.|.+.|. +.|++++.... ..... ...+.|.|.+++.+|+|.|+
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~------~~~~~-----~~~~~L~i~~~~~~d~G~Y~ 67 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHW------TLYSD-----GSSSILSTNNATFQNTGTYR 67 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSC------EECCB-----TTEEEEEESSCCGGGCSCEE
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCce------EEecc-----CceEEEEEcccccccCEEEE
Confidence 36888888888999999999999999884 99997653211 01001 12358999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-c--ccccccccCC---c
Q psy10487 339 CYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-H--KNKRRKRKGK---M 412 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~---~ 412 (610)
|.|.|..|..+..+.|.|...... +...+....+..+..+ .+.|.... . +...|.+... .
T Consensus 68 C~~~n~~~~~~~~~~l~V~~~~~~--~~~~~~~~~v~~g~~v------------~l~C~~~~~~~~~~v~W~~~~~~~~~ 133 (292)
T 4dkd_C 68 CTEPGDPLGGSAAIHLYVKDPARP--WNVLAQEVVVFEDQDA------------LLPCLLTDPVLEAGVSLVRVRGRPLM 133 (292)
T ss_dssp ECCCC----CCEEECCEECCSSCC--EEESCSEEEEETTSCE------------ECCEEESSGGGGSSEEEEEGGGCCCC
T ss_pred EEEccCCCCcceEEEEEEcCcccc--ccccCCeEEEcCCCcE------------EEeeeCCCCCcceeEEEEecCCCccc
Confidence 999999998888998888643222 1212222222222221 11222221 1 1112211100 0
Q ss_pred cccccccccccceeeeeeeeccCcceeeeecCCCcceee-eeeccccc
Q psy10487 413 KQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL-IEQSLAME 459 (610)
Q Consensus 413 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~~ 459 (610)
.........++.|.|.+++.+|+|.|+|.|.|..|.... ...|.|..
T Consensus 134 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 181 (292)
T 4dkd_C 134 RHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK 181 (292)
T ss_dssp SSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred cCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence 111111233445999999999999999999998886543 55665554
No 285
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.45 E-value=2.6e-13 Score=116.85 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=76.1
Q ss_pred CceeeeecceEeecCceEEEEEEEEec---CCCeEEEEeCCEE-ecc--CCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQV-LHN--SSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~---P~p~v~W~~~g~~-l~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 334 (610)
|.|...|..+.+.+|++++|.|.+.|. |.|.|.|+|++.. +.. ..+.+......+........|+|.+++.+|+
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 556777889999999999999999875 8999999997421 111 1111110000000112356999999999999
Q ss_pred eEEEEEeecCCcceeEEEEEEcCc-cccccccc
Q psy10487 335 GEYTCYAENIRGNASGEISLDLPE-INLATTLS 366 (610)
Q Consensus 335 G~Y~C~a~N~~G~~~~~~~L~V~~-~~~~p~~~ 366 (610)
|.|+|+|.|..|..++++.|.|.+ +...|.+.
T Consensus 88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~~~ 120 (126)
T 2dav_A 88 GNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120 (126)
T ss_dssp EEEEEEEECSSCEEEECCEEEEECCCCSCCCCC
T ss_pred EEEEEEEEeCCCcEEEEEEEEEEecCCCCCeEE
Confidence 999999999999999999999976 44444443
No 286
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.45 E-value=3.2e-13 Score=116.12 Aligned_cols=86 Identities=29% Similarity=0.375 Sum_probs=69.2
Q ss_pred cCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCC-ceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEE
Q psy10487 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD-ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352 (610)
Q Consensus 274 ~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 352 (610)
.+..+.|.|.+.|+|.|+|+|+|||..+....+.+....... ......+.|.|.+++..|+|.|+|+|.|.+|.+++++
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~ 93 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence 567899999999999999999999999987765433322210 0012357899999999999999999999999999999
Q ss_pred EEEcCcc
Q psy10487 353 SLDLPEI 359 (610)
Q Consensus 353 ~L~V~~~ 359 (610)
.|.|...
T Consensus 94 ~l~v~~~ 100 (126)
T 1he7_A 94 MAAFMDN 100 (126)
T ss_dssp EECCCSC
T ss_pred EEEEEcC
Confidence 9988543
No 287
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.45 E-value=3e-13 Score=133.02 Aligned_cols=163 Identities=12% Similarity=0.079 Sum_probs=98.5
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+......... .. ....+.|.|.+++.+|+|.|+|
T Consensus 7 kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~-~~----~~~~~~L~I~~v~~~DsG~Y~C 79 (257)
T 1b6u_A 7 KPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEH-HD----GVSKANFSIGPMMQDLAGTYRC 79 (257)
T ss_dssp CCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBC-CT----TCEEEEEEECSCCTTTCEEEEE
T ss_pred CCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeec-cC----CCceEEEEeecCCcccCEEEEE
Confidence 566766665 67889999999999975 57899999988654321110000 00 0234689999999999999999
Q ss_pred EeecCCc-----ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCccc
Q psy10487 340 YAENIRG-----NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQ 414 (610)
Q Consensus 340 ~a~N~~G-----~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (610)
.|.|..+ ..+..+.|.|.+....|.+...+......+ .. +...|.....+. +..|.+++.
T Consensus 80 ~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G-~~------------vtL~C~~~~~~~--~~~w~k~g~ 144 (257)
T 1b6u_A 80 YGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAG-ES------------VTLSCSSRSSYD--MYHLSREGE 144 (257)
T ss_dssp EEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTT-CE------------EEEEEECSSCCS--EEEEEETTS
T ss_pred eEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCC-CE------------EEEEEeCCCCCc--EEEEEECCc
Confidence 9987532 235667788865555555544443222111 11 123333322211 111222211
Q ss_pred ccc---------ccccccceeeeeeeeccCcceeeeecCCC
Q psy10487 415 SVS---------FNDQEKKLLDVSITTTDRHTGSCEALGSQ 446 (610)
Q Consensus 415 ~~~---------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~ 446 (610)
.+. ....+..|.|.+|+ |+|.|+|.|.|..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~ 183 (257)
T 1b6u_A 145 AHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRD 183 (257)
T ss_dssp SCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSS
T ss_pred ccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCC
Confidence 111 01235689999998 9999999999864
No 288
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.1e-14 Score=118.63 Aligned_cols=99 Identities=27% Similarity=0.375 Sum_probs=81.4
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............. ....|.|.+++.+|+|.|+
T Consensus 8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~ 82 (110)
T 2dm3_A 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN-----GVHSLIIEPVTSRDAGIYT 82 (110)
T ss_dssp CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTT-----SCEEEEESSCCGGGCSBBC
T ss_pred CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecC-----CeEEEEEeeCCcccCEEEE
Confidence 47888888899999999999999999999999999999998877654332222211 1248999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccc
Q psy10487 339 CYAENIRGNASGEISLDLPEINLA 362 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~ 362 (610)
|.|.|..|..+..+.|.|...+.+
T Consensus 83 C~a~n~~g~~~~~~~l~V~~~p~~ 106 (110)
T 2dm3_A 83 CIATNRAGQNSFSLELVVAAKESG 106 (110)
T ss_dssp EEEECSSCEEEECCEEEEECCCCS
T ss_pred EEEECCCCEEEEEEEEEEeCCCCC
Confidence 999999999999999998654443
No 289
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=7.2e-13 Score=141.55 Aligned_cols=164 Identities=21% Similarity=0.288 Sum_probs=122.5
Q ss_pred cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhh--hccc-----------C-CCCccEEEcccCCCcccchhhhc
Q psy10487 37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEA--FKSI-----------G-LLNLQRIYLKNSGIREVHRDTFK 102 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~--~~~~-----------~-l~~L~~L~L~~n~l~~i~~~~f~ 102 (610)
+.+++.+++++.+|. ++.++++|+|++|.++.++... ++.+ . ..+|++|++++|.+..++ +|+
T Consensus 74 ~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp--~~~ 150 (454)
T 1jl5_A 74 HELELNNLGLSSLPE-LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP--ELQ 150 (454)
T ss_dssp SEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC--CCT
T ss_pred CEEEecCCccccCCC-CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc--ccC
Confidence 455555555555553 4455555555555554443211 0000 1 258999999999999976 499
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccc
Q psy10487 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESL 182 (610)
Q Consensus 103 ~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 182 (610)
.+++|++|++++|++..++.. ..+|++|+|++|.++.++ .|.++++|+.|++++|+++.++. ...+|+.|
T Consensus 151 ~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L 220 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD----LPLSLESI 220 (454)
T ss_dssp TCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEE
T ss_pred CCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC----CcCcccEE
Confidence 999999999999999987642 358999999999999975 48899999999999999988643 23589999
Q ss_pred ccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487 183 NLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 183 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
++++|.++.++. +..+++|+.|++++|.+..
T Consensus 221 ~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 221 VAGNNILEELPE--LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp ECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS
T ss_pred ECcCCcCCcccc--cCCCCCCCEEECCCCcCCc
Confidence 999999998773 7788999999999998764
No 290
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.45 E-value=1e-13 Score=128.90 Aligned_cols=165 Identities=12% Similarity=0.083 Sum_probs=99.2
Q ss_pred ecceEeecCceEEEEEEEE--ecCCCeEEEEe--CCEEeccCCccce-eeccCCceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487 267 ESMVIREAGGNVTMSCYVY--GDPEPTILWLL--NGQVLHNSSFDLL-EEEEGDALFEKSVSITLFNVTDLDAGEYTCYA 341 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~--g~P~p~v~W~~--~g~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 341 (610)
...+...+|++++|.|... +.|.+.|.|++ ++..+........ ....++..+..+++|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~ 85 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence 3456788999999999543 35678999999 8877632211100 01112222234469999999999999999999
Q ss_pred ecCCccee--EEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccccc
Q psy10487 342 ENIRGNAS--GEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFN 419 (610)
Q Consensus 342 ~N~~G~~~--~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (610)
.|..|... ..+.|.|.+....|.+..... . +...|.....+.. ...|.+.+..+ .
T Consensus 86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~--------~------------v~L~C~~~~~p~~-~~~W~~~g~~l--~ 142 (182)
T 1hnf_A 86 YDTKGKNVLEKIFDLKIQERVSKPKISWTCI--------N------------TTLTCEVMNGTDP-ELNLYQDGKHL--K 142 (182)
T ss_dssp EETTSCEEEEEEEEEEEECCCCCCEEEEETT--------T------------TEEEEECSSCSSC-EEEEEESSCEE--E
T ss_pred EeCCCceeEEEEEEEEEcCcCCCCEEEEccC--------c------------EEEEeEccCCCCC-EEEEEECCEEC--C
Confidence 99998753 567787754433443332111 0 1334443333221 12333333322 1
Q ss_pred ccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487 420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS 455 (610)
Q Consensus 420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 455 (610)
.....+.+ ....+|+|.|+|+|.|..|.......+
T Consensus 143 ~~~~~i~~-~~~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 143 LSQRVITH-KWTTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp EESSCEEE-ECCSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred CCCcEEEE-ecccCCCcEEEEEEEeCCCCcEEccee
Confidence 12222322 334679999999999999987775544
No 291
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=7.7e-13 Score=141.33 Aligned_cols=158 Identities=22% Similarity=0.278 Sum_probs=130.1
Q ss_pred cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCC
Q psy10487 37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~ 116 (610)
+.+++.+++++.+| .++.+|++|+|++|.|+.++ .|. ++++|++|++++|.+..++. ...+|++|++++|+
T Consensus 114 ~~L~l~~n~l~~l~-~~~~~L~~L~L~~n~l~~lp--~~~--~l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 114 KSLLVDNNNLKALS-DLPPLLEYLGVSNNQLEKLP--ELQ--NSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQ 184 (454)
T ss_dssp CEEECCSSCCSCCC-SCCTTCCEEECCSSCCSSCC--CCT--TCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC
T ss_pred cEEECCCCccCccc-CCCCCCCEEECcCCCCCCCc--ccC--CCCCCCEEECCCCcCcccCC----CcccccEEECcCCc
Confidence 45666666666665 34568888999999888877 366 78999999999999998763 23589999999999
Q ss_pred CCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccccccccccccccCccc
Q psy10487 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESV 196 (610)
Q Consensus 117 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 196 (610)
+..++ .|.++++|+.|++++|.++.++.. ..+|+.|++++|++..++ .+..+++|+.|++++|++++++.
T Consensus 185 l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~-- 254 (454)
T 1jl5_A 185 LEELP--ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD-- 254 (454)
T ss_dssp CSSCC--CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS--
T ss_pred CCcCc--cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc--
Confidence 99986 489999999999999999987542 258999999999999875 38899999999999999998765
Q ss_pred ccCCCcccEEecCCCcccc
Q psy10487 197 FFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 197 ~~~~~~L~~l~l~~N~~~c 215 (610)
.+.+|+.|++++|.+..
T Consensus 255 --~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 255 --LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp --CCTTCCEEECCSSCCSC
T ss_pred --cccccCEEECCCCcccc
Confidence 24689999999998753
No 292
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.45 E-value=5.5e-14 Score=135.97 Aligned_cols=178 Identities=13% Similarity=0.113 Sum_probs=100.0
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EE---eccCCccceeeccCCcee---eeeeEEEEEecCC
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QV---LHNSSFDLLEEEEGDALF---EKSVSITLFNVTD 331 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~ 331 (610)
.+.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|.. .. +............++... .....|.|.+++.
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 103 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 103 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence 455666678889999999999999999999999999832 11 110000000000011011 1245899999999
Q ss_pred CCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec----ccccc
Q psy10487 332 LDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH----KNKRR 406 (610)
Q Consensus 332 ~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 406 (610)
+|+|.|+|.|.|..|.. ...+.|.|.....+|.+.......... .+.. +...|...+. +...|
T Consensus 104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~-----------~g~~-v~l~C~~~~~~p~~~~v~W 171 (237)
T 3sob_L 104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQL-----------KSGT-ASVVCLLNNFYPREAKVQW 171 (237)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHH-----------HHTE-EEEEEEEEEEBSSCCEEEE
T ss_pred hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhc-----------cCCc-eEEEEEEcccCCCceEEEE
Confidence 99999999999987642 334566664333344433221111100 1111 2334443331 23334
Q ss_pred cccCCcccc------cccccc------ccceeeeeeeeccCcceeeeecCCCcce
Q psy10487 407 KRKGKMKQS------VSFNDQ------EKKLLDVSITTTDRHTGSCEALGSQPDM 449 (610)
Q Consensus 407 ~~~~~~~~~------~~~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 449 (610)
.+.+..-.. ...... ...|.+..+..+|.|.|+|.|.|.....
T Consensus 172 ~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 226 (237)
T 3sob_L 172 KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 226 (237)
T ss_dssp EETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred EECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence 332211110 000111 2346677777789999999999987653
No 293
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.44 E-value=8.8e-13 Score=145.65 Aligned_cols=160 Identities=21% Similarity=0.233 Sum_probs=95.2
Q ss_pred cEEEcCCCCCCccCcccCCCccEEEeecCCCCCCChhhhcc---------------cCCCCccEEEcccCCCcccchhhh
Q psy10487 37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKS---------------IGLLNLQRIYLKNSGIREVHRDTF 101 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l~~~~~~~---------------~~l~~L~~L~L~~n~l~~i~~~~f 101 (610)
+.++..+++++.+|..+ .+|++|+|++|.|+.++.. +.. ..+++|+.|+|++|.|..++.
T Consensus 124 ~~L~L~~N~l~~lp~~l-~~L~~L~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~--- 198 (622)
T 3g06_A 124 CKLWIFGNQLTSLPVLP-PGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT--- 198 (622)
T ss_dssp CEEECCSSCCSCCCCCC-TTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---
T ss_pred CEEECCCCCCCcCCCCC-CCCCEEECcCCcCCCcCCc-cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC---
Confidence 44555555555555432 4566666666666554421 100 011334444444444443332
Q ss_pred cCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCccccc
Q psy10487 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES 181 (610)
Q Consensus 102 ~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (610)
.+.+|+.|++++|+|..++. .+++|+.|+|++|.++.++ ..+++|+.|+|++|+|+.++. .+.+|+.
T Consensus 199 -~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~ 265 (622)
T 3g06_A 199 -LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLS 265 (622)
T ss_dssp -CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCE
T ss_pred -ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcE
Confidence 12344444444444444432 2366777777777777765 345778888888888887754 4577888
Q ss_pred cccccccccccCcccccCCCcccEEecCCCcccc
Q psy10487 182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC 215 (610)
Q Consensus 182 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~N~~~c 215 (610)
|+|++|+|+.++. .+..+++|+.|++++|++..
T Consensus 266 L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 266 LSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp EECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCH
T ss_pred EeCCCCCCCcCCH-HHhhccccCEEEecCCCCCC
Confidence 8888888887754 46778888888888888764
No 294
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.2e-13 Score=114.53 Aligned_cols=96 Identities=21% Similarity=0.368 Sum_probs=76.0
Q ss_pred cccCCCceeee---ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCC
Q psy10487 256 EFACPPNVTIK---ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332 (610)
Q Consensus 256 ~~~c~P~i~~~---~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 332 (610)
+...+|.+... +..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... +...... ...+.|.|.+++.+
T Consensus 17 ~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~~~------~~~~~L~i~~~~~~ 89 (118)
T 2e7c_A 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRTS------DFDTVFFVRQAARS 89 (118)
T ss_dssp CCSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCS-SCEEEEC------SSEEEEEESSCCTT
T ss_pred eeccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCC-cEEEEEC------CCeEEEEECCCChh
Confidence 33456777543 46788899999999999999999999999999988632 2111111 12347999999999
Q ss_pred CCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487 333 DAGEYTCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 333 D~G~Y~C~a~N~~G~~~~~~~L~V~~ 358 (610)
|+|.|+|.|.|..|..+..+.|.|.+
T Consensus 90 D~G~Y~C~a~N~~G~~~~~~~l~V~~ 115 (118)
T 2e7c_A 90 DSGEYELSVQIENMKDTATIRIRVVE 115 (118)
T ss_dssp TCEEEEEEEECSSCEECCEEEEEEEC
T ss_pred cCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 99999999999999999999998843
No 295
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=1.8e-13 Score=139.89 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=97.8
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCcc-EEEccCccccccCHHHhhcCcccccc
Q psy10487 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLK-TIELQHCQIHSVHKDALIHLTALESL 182 (610)
Q Consensus 104 l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L 182 (610)
+.+|++|+|++|++..++...|.++.+|+.|+|.+| ++.+...+|.++.+|+ .|++.+ +++.+...+|.++.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999999999999999999999999998 9999999999999999 999998 8999999999999999999
Q ss_pred ccccccccccCcccccCCCcccEEec
Q psy10487 183 NLNGNRLKHLSESVFFPTPNLKTLSL 208 (610)
Q Consensus 183 ~L~~n~l~~~~~~~~~~~~~L~~l~l 208 (610)
+++.|.++.+...+|..+++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999999999999999998863
No 296
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.44 E-value=5.4e-14 Score=133.83 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=68.3
Q ss_pred CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC---EE--eccCCccceeeccCCcee---eeeeEEEEEecCCC
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG---QV--LHNSSFDLLEEEEGDALF---EKSVSITLFNVTDL 332 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g---~~--l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~ 332 (610)
|.+...+..+.+.+|++++|.|.+.|.|.+.+.|+|.. .. +............++... .....|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE 81 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence 45666678889999999999999999999999999832 11 110000000000001011 12348999999999
Q ss_pred CCeEEEEEeecCCcc-eeEEEEEEcCccccccccc
Q psy10487 333 DAGEYTCYAENIRGN-ASGEISLDLPEINLATTLS 366 (610)
Q Consensus 333 D~G~Y~C~a~N~~G~-~~~~~~L~V~~~~~~p~~~ 366 (610)
|+|.|+|.|.|..|. ....+.|.|.....+|.+.
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~ 116 (213)
T 3r06_A 82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVS 116 (213)
T ss_dssp GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEE
T ss_pred cCEEEEEecccCCceEEcCCceEEEeccCCCceee
Confidence 999999999998764 3345667774444444443
No 297
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.44 E-value=1.1e-13 Score=116.48 Aligned_cols=94 Identities=26% Similarity=0.416 Sum_probs=68.5
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.......... ..+.|.|.+++.+|+|.|+
T Consensus 9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~ 80 (108)
T 3kvq_A 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--------GNRNLTIRRVRKEDEGLYT 80 (108)
T ss_dssp --CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET--------TTTEEEECSCCGGGCEEEE
T ss_pred CCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC--------CCcEEEEeecCcccCEEEE
Confidence 46788888888999999999999999999999999999998876544322111 1248999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccc
Q psy10487 339 CYAENIRGNASGEISLDLPEIN 360 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~ 360 (610)
|.|.|..|.....+.|.|...+
T Consensus 81 C~a~n~~g~~~~~~~l~V~~~~ 102 (108)
T 3kvq_A 81 CQACSVLGCAKVEAFFIIEGAQ 102 (108)
T ss_dssp EEEC----CEEEEEEEEEEC--
T ss_pred EEEEeCCCceEEEEEEEEeCCC
Confidence 9999999999999999985443
No 298
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.43 E-value=3.3e-13 Score=131.68 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=59.0
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEe--c--cCC--ccceee--ccCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVL--H--NSS--FDLLEE--EEGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l--~--~~~--~~~~~~--~~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.| .+.|.|+|+. ... . ... ...... ..++.... ...+|+|.+
T Consensus 8 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 87 (247)
T 2ghw_B 8 QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNS 87 (247)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECc
Confidence 34568899999999999999987 6889999842 111 0 000 000000 00010111 134799999
Q ss_pred cCCCCCeEEEEEeecCCcc--eeEEEEEEcCc
Q psy10487 329 VTDLDAGEYTCYAENIRGN--ASGEISLDLPE 358 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G~--~~~~~~L~V~~ 358 (610)
++.+|+|.|+|.|.|..+. ....+.|.|..
T Consensus 88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~ 119 (247)
T 2ghw_B 88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSS 119 (247)
T ss_dssp CCGGGCEEEEEEEEETTEEEEECCCEEEEECS
T ss_pred CCHHHCEEEEEeeeccCCccccCCceEEEEec
Confidence 9999999999999998443 23445677753
No 299
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.43 E-value=1.6e-13 Score=134.09 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=96.9
Q ss_pred ecceEeecCceEEEEEEEEecCCCe-----EEEEeCCEEeccC-------CccceeeccCC-----ceeeeeeEEEEEec
Q psy10487 267 ESMVIREAGGNVTMSCYVYGDPEPT-----ILWLLNGQVLHNS-------SFDLLEEEEGD-----ALFEKSVSITLFNV 329 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~g~P~p~-----v~W~~~g~~l~~~-------~~~~~~~~~~~-----~~~~~~~~L~I~~v 329 (610)
+..+.+.+|++++|.|.+.|.|.+. |.|++++...... ........... ........|.|.++
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v 89 (248)
T 3pv7_A 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI 89 (248)
T ss_dssp TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence 4566888999999999999999886 9999963221100 00000000000 00012346999999
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee---cc-ccc
Q psy10487 330 TDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE---HK-NKR 405 (610)
Q Consensus 330 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~ 405 (610)
+.+|+|.|+|.+.|..|.....+.|.|.. +|.+...+......+. .. ...|...+ .+ ...
T Consensus 90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~---~P~v~~~~~~~~~~~~-----------~~--~L~C~~~g~~P~pi~v~ 153 (248)
T 3pv7_A 90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVA---SPASRLLLDQVGMKEN-----------ED--KYMCESSGFYPEAINIT 153 (248)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEB---CCEEEEECC-------------------C--EEEEEEEEEBSSCCEEE
T ss_pred CHHHCeEEEEEEEeCCccceeEEEEEEec---CCceEEecCCccccCC-----------Cc--EEEEEEccEECCCeEEE
Confidence 99999999999999999888888888853 3333222221111111 11 12333332 22 233
Q ss_pred ccccCCcc------------cccccc-----ccccceeeeeeeeccCcceeeeecCCCcceee--eeeccc
Q psy10487 406 RKRKGKMK------------QSVSFN-----DQEKKLLDVSITTTDRHTGSCEALGSQPDMEL--IEQSLA 457 (610)
Q Consensus 406 ~~~~~~~~------------~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~--~~~l~v 457 (610)
|.+.+..- ...... .....|.+.....+|.|.|+|.|.|..+.... ...|.|
T Consensus 154 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 154 WEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp EEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred EEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 33322100 000000 11235777778888999999999999887433 444444
No 300
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=136.84 Aligned_cols=180 Identities=15% Similarity=0.096 Sum_probs=98.6
Q ss_pred cceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccC------CccceeeccCCce------eeeeeEEEEEecCCCCC
Q psy10487 268 SMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNS------SFDLLEEEEGDAL------FEKSVSITLFNVTDLDA 334 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~------~~~~~~~~~~~~~------~~~~~~L~I~~v~~~D~ 334 (610)
..+++.+|++++|.|.+.+. |.+.|.|+|++...... ...........+. ....++|.|.+++.+|+
T Consensus 7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 86 (308)
T 4fom_A 7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS 86 (308)
T ss_dssp CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence 35678899999999998754 55679999964322110 0000000000000 01235799999999999
Q ss_pred eEEEEEeecC-CcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEe---eecccccccccC
Q psy10487 335 GEYTCYAENI-RGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA---HEHKNKRRKRKG 410 (610)
Q Consensus 335 G~Y~C~a~N~-~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 410 (610)
|.|+|.|.|. .|.....+.+.+......+.+..... .....+. .+.+.|.. .+.+...|.+..
T Consensus 87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~------------~~~l~C~~~~g~P~~~i~W~~~~ 153 (308)
T 4fom_A 87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDS-LIDGGNE------------TVAAICIAATGKPVAHIDWEGDL 153 (308)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSC-CCTTCSC------------EEEEEEEEEEEBSCCEEEECCCS
T ss_pred EEEEEEEeeCCCcceeeeeEEEeeeccccccccccce-eEEcCCc------------eEEEEEEecCCcCCceEEEEECC
Confidence 9999999886 56667777776643322222222111 1111110 11233332 222333333322
Q ss_pred Cccccc--c----ccccccceeeeeeeeccCcceeeeecCCCcceeee--eecccccC
Q psy10487 411 KMKQSV--S----FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI--EQSLAMEQ 460 (610)
Q Consensus 411 ~~~~~~--~----~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~--~~l~v~~~ 460 (610)
..-... . .......|.|..+..+|.|.|+|.|.|..|..... ..|.|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~ 211 (308)
T 4fom_A 154 GEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYA 211 (308)
T ss_dssp SBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEE
T ss_pred cccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecC
Confidence 111100 0 01122368889999999999999999988765444 44545443
No 301
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.43 E-value=7.5e-13 Score=126.57 Aligned_cols=178 Identities=12% Similarity=0.140 Sum_probs=96.7
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEecc----C--Cccceeec--cCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLHN----S--SFDLLEEE--EGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~~----~--~~~~~~~~--~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.| .+.+.|+|+ +..+.. . ........ .++.... ..+.|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 45667889999999999999876 789999996 332210 0 00000000 0111111 135899999
Q ss_pred cCCCCCeEEEEEeecCCcc----eeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee---
Q psy10487 329 VTDLDAGEYTCYAENIRGN----ASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE--- 400 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G~----~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 400 (610)
++.+|+|.|+|.|.|..|. ....+.|.|... ..+|.+........+..+. .+.+.|...+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~------------~v~L~C~~~g~~P 153 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNS------------MVTLGCLVKGYFP 153 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSS------------EEEEEEEEEEEBS
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCC------------eEEEEEEcccccC
Confidence 9999999999999998742 223566777542 1223332211111111111 1233444433
Q ss_pred cc-cccccccCCccccccc----c----ccccceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487 401 HK-NKRRKRKGKMKQSVSF----N----DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL 456 (610)
Q Consensus 401 ~~-~~~~~~~~~~~~~~~~----~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 456 (610)
.+ ...|.+.+........ . .....|.| .....|.|.|+|.|.|..|.......+.
T Consensus 154 ~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i-~~~~~d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 154 EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV-PSSPRPSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp SCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEE-ESSSTTTSCCEEEEEEGGGTEEEEEECC
T ss_pred CCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEE-ecccCCCCEEEEEEEeCCCCccEEEecC
Confidence 33 3344433321000000 0 01125667 4444477999999999998866655543
No 302
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=5.9e-14 Score=145.59 Aligned_cols=160 Identities=19% Similarity=0.274 Sum_probs=103.7
Q ss_pred CCCccEEEeecCCCCCCCh----hhhcccCCC-CccEEEcccCCCcccchhhhcCC-----CCCcEEEccCCCCCCCCcc
Q psy10487 54 DSDIQVLDLNNNKISYLTK----EAFKSIGLL-NLQRIYLKNSGIREVHRDTFKYL-----TILVEVDLSDNQIAWLHQD 123 (610)
Q Consensus 54 ~~~L~~L~L~~n~i~~l~~----~~~~~~~l~-~L~~L~L~~n~l~~i~~~~f~~l-----~~L~~LdLs~n~l~~l~~~ 123 (610)
+.+|++|+|++|.|+.+.. ..|. +++ +|++|+|++|.|.......|..+ ++|++|+|++|+|......
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 4467777777777777776 5555 566 77777777777777666666554 7777777777777766654
Q ss_pred c----ccCC-CCCcEEEeeCccccccCcCc----CCC-CCCccEEEccCccccccCHHH----hhcCc-ccccccccccc
Q psy10487 124 T----FLGN-DRLKVLYLNGNPITELRAGQ----FPK-LPYLKTIELQHCQIHSVHKDA----LIHLT-ALESLNLNGNR 188 (610)
Q Consensus 124 ~----f~~l-~~L~~L~Ls~N~l~~l~~~~----~~~-l~~L~~L~L~~n~l~~~~~~~----~~~l~-~L~~L~L~~n~ 188 (610)
. |..+ ++|+.|+|++|.++...... +.. ..+|+.|+|++|+|....... +..+. +|+.|+|++|+
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 3 3333 67777777777777665433 223 247777777777777544332 33444 77777777777
Q ss_pred ccccCccc----ccCC-CcccEEecCCCcccc
Q psy10487 189 LKHLSESV----FFPT-PNLKTLSLDGNPWCC 215 (610)
Q Consensus 189 l~~~~~~~----~~~~-~~L~~l~l~~N~~~c 215 (610)
++...... +..+ ++|+.|++++|.+.-
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 77665432 2233 477777777777653
No 303
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.43 E-value=3.1e-14 Score=135.34 Aligned_cols=177 Identities=12% Similarity=0.057 Sum_probs=98.8
Q ss_pred eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec---cCCccceeeccCCce---eeeeeEEEEEecCCCCC
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH---NSSFDLLEEEEGDAL---FEKSVSITLFNVTDLDA 334 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~---~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~ 334 (610)
+...+ .+.+.+|++++|.|.+. |.+.+.|+++ +..+. ...........++.. ......|.|.+++.+|+
T Consensus 4 v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 80 (211)
T 3tv3_L 4 LTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE 80 (211)
T ss_dssp CBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred EEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC
Confidence 33444 77889999999999998 9999999993 22211 000000000000000 01235899999999999
Q ss_pred eEEEEEeecCCc--ceeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec----cccccc
Q psy10487 335 GEYTCYAENIRG--NASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH----KNKRRK 407 (610)
Q Consensus 335 G~Y~C~a~N~~G--~~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 407 (610)
|.|+|.|.|..| .....+.|.|.... .+|.+...+...... .+. .+.+.|...+. +...|.
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~-----------~g~-~v~l~C~~~g~~p~~~~v~W~ 148 (211)
T 3tv3_L 81 AVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEEL-----------QAN-KATLVCLISDFYPGAVTVAWK 148 (211)
T ss_dssp EEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHH-----------HTT-CEEEEEEEEEEBSSCCEEEEE
T ss_pred EEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhh-----------cCC-CeEEEEEeeeecCCCeEEEEE
Confidence 999999999988 45566777775322 233333222111111 111 11333433331 122333
Q ss_pred ccCCcccc-----ccccc------cccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487 408 RKGKMKQS-----VSFND------QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ 454 (610)
Q Consensus 408 ~~~~~~~~-----~~~~~------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 454 (610)
+.+..-.. ..... ....|.|..+..+|+|.|+|.|.|..|..+..+.
T Consensus 149 k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 149 ADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp ETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred ECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 22211000 00001 1135777888888999999999999987766554
No 304
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=113.23 Aligned_cols=90 Identities=28% Similarity=0.444 Sum_probs=76.1
Q ss_pred cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
..+|.+...+....+.+|++++|.|.+.|.|.|.+.|++++..+..... ... ...+.|.|.+++.+|+|.|
T Consensus 9 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~------~~~~~L~i~~v~~~D~G~Y 79 (99)
T 2yr3_A 9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCE------AGVAELHIQDALPEDHGTY 79 (99)
T ss_dssp CEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCC---EEE------TTEEEEEECSCCTTCCBCE
T ss_pred ccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccce---Eee------CCeEEEEECCCChhhCEEE
Confidence 3578888888899999999999999999999999999999987764432 111 1235899999999999999
Q ss_pred EEEeecCCcceeEEEEEEc
Q psy10487 338 TCYAENIRGNASGEISLDL 356 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V 356 (610)
+|.|.|..|..+.++.|.|
T Consensus 80 ~C~a~N~~g~~~~~~~l~V 98 (99)
T 2yr3_A 80 TCLAENALGQVSCSAWVTV 98 (99)
T ss_dssp EEEEECSSCEEEEECCEEE
T ss_pred EEEEEECCCeEEEEEEEEE
Confidence 9999999999988888876
No 305
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.43 E-value=1.5e-13 Score=115.59 Aligned_cols=95 Identities=25% Similarity=0.434 Sum_probs=79.7
Q ss_pred ccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487 257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336 (610)
Q Consensus 257 ~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 336 (610)
...+|.|...+..+.+.+|++++|.|.+.|.|.|.+.|+++|..+....+....... ..+.|.|.+++.+|+|.
T Consensus 11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~ 84 (106)
T 1nct_A 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK------YKSTFEISSVQASDEGN 84 (106)
T ss_dssp SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECS------SEEEEEECCCCSSCCSE
T ss_pred CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECC------CEEEEEECcCCchhCEE
Confidence 345788888999999999999999999999999999999999887655432222111 13589999999999999
Q ss_pred EEEEeecCCcceeEEEEEEcC
Q psy10487 337 YTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 337 Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
|+|.|.|..|..+.++.|.|.
T Consensus 85 Y~C~a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 85 YSVVVENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp EEECCBCSSCBCCEEEEEEEC
T ss_pred EEEEEEeCCCeEEEEEEEEEE
Confidence 999999999999999999873
No 306
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.43 E-value=8.3e-13 Score=108.85 Aligned_cols=90 Identities=24% Similarity=0.357 Sum_probs=74.0
Q ss_pred eeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEe
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA 341 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 341 (610)
+...+..+.+.+|++++|.|.+.|. |.|.+.|++++..+....+.......+ ...|.|.+++.+|+|.|+|.|
T Consensus 4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~------~~~L~i~~v~~~D~G~Y~C~a 77 (97)
T 2bk8_A 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDG------VAILYVKDITKLDDGTYRCKV 77 (97)
T ss_dssp EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETT------EEEEEECSCCGGGCEEEEEEE
T ss_pred eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCC------eEEEEEecCChhhCeEEEEEE
Confidence 3445678889999999999999997 999999999999887654432222111 248999999999999999999
Q ss_pred ecCCcceeEEEEEEcCc
Q psy10487 342 ENIRGNASGEISLDLPE 358 (610)
Q Consensus 342 ~N~~G~~~~~~~L~V~~ 358 (610)
.|..|....++.|.|.+
T Consensus 78 ~n~~g~~~~~~~l~V~~ 94 (97)
T 2bk8_A 78 VNDYGEDSSYAELFVKG 94 (97)
T ss_dssp ECSSCEEEEEEEEEETT
T ss_pred ECCCCeEeEEEEEEEEe
Confidence 99999999999999854
No 307
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=4.7e-14 Score=146.34 Aligned_cols=180 Identities=17% Similarity=0.220 Sum_probs=137.7
Q ss_pred CcEEEcCCCCCCccCc-----c---cCCCccEEEeecCCCCCCChhhhccc--C-CCCccEEEcccCCCcccchhhh---
Q psy10487 36 KKSALCKDANFTALPS-----T---LDSDIQVLDLNNNKISYLTKEAFKSI--G-LLNLQRIYLKNSGIREVHRDTF--- 101 (610)
Q Consensus 36 ~~~~~C~~~~l~~lP~-----~---l~~~L~~L~L~~n~i~~l~~~~~~~~--~-l~~L~~L~L~~n~l~~i~~~~f--- 101 (610)
-+.++.++++++.++. . ++.+|++|+|++|.|+......|..+ . ..+|++|+|++|.+.......|
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 3678889998888774 1 23489999999999998887776521 1 2899999999999998776644
Q ss_pred -cCC-CCCcEEEccCCCCCCCCcccc----cC-CCCCcEEEeeCccccccCcC----cCCCCC-CccEEEccCccccccC
Q psy10487 102 -KYL-TILVEVDLSDNQIAWLHQDTF----LG-NDRLKVLYLNGNPITELRAG----QFPKLP-YLKTIELQHCQIHSVH 169 (610)
Q Consensus 102 -~~l-~~L~~LdLs~n~l~~l~~~~f----~~-l~~L~~L~Ls~N~l~~l~~~----~~~~l~-~L~~L~L~~n~l~~~~ 169 (610)
..+ ++|++|+|++|+|.......| .. ..+|++|+|++|.++..... .+..++ +|+.|+|++|+|+...
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 444 899999999999998877554 33 36999999999999864432 233444 9999999999999887
Q ss_pred HHHhh----cC-ccccccccccccccccCcc----cccC-CCcccEEecCCCcccc
Q psy10487 170 KDALI----HL-TALESLNLNGNRLKHLSES----VFFP-TPNLKTLSLDGNPWCC 215 (610)
Q Consensus 170 ~~~~~----~l-~~L~~L~L~~n~l~~~~~~----~~~~-~~~L~~l~l~~N~~~c 215 (610)
...+. .+ .+|+.|+|++|.|...... .+.. .++|+.|++++|.+..
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 75544 44 5999999999999874322 2323 4589999999998754
No 308
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.42 E-value=1e-13 Score=136.05 Aligned_cols=186 Identities=13% Similarity=0.095 Sum_probs=99.7
Q ss_pred eeeeecceEeecCceEEEEEEEEecC--CCeEEEEe--CCEEeccC------C--ccceeeccCCceee-----eeeEEE
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDP--EPTILWLL--NGQVLHNS------S--FDLLEEEEGDALFE-----KSVSIT 325 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~--~g~~l~~~------~--~~~~~~~~~~~~~~-----~~~~L~ 325 (610)
+...+..+.+.+|++++|.|.+.|.+ .+.+.|+| .+..+..- . ........++.... ....|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 34566778899999999999999854 78999998 22211100 0 00000000111111 123599
Q ss_pred EEecCCCCCeEEEEEeecCCcce-eEEEEEEcCcc------------ccccccccCCcceeehhhhHHHHHHHHHhheeE
Q psy10487 326 LFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEI------------NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMS 392 (610)
Q Consensus 326 I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (610)
|.+++.+|+|.|+|.|.|..+.. ...+.|.|... ...+.+...+....+..+..+.+.|.+.+....
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~ 163 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR 163 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence 99999999999999999977654 34566777531 123344444443444333333333332222221
Q ss_pred ----EEEEEeeec-ccccccc------cCCccccccc--cccccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 393 ----FCVCRAHEH-KNKRRKR------KGKMKQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 393 ----~~~~~~~~~-~~~~~~~------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
.+.|.+... ....... .......... ......|.|.+++.+|+|.|.|.|.|..+.
T Consensus 164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~ 232 (253)
T 3uzq_A 164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPW 232 (253)
T ss_dssp TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCc
Confidence 222222110 0000000 0000011111 122346999999999999999999996543
No 309
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.42 E-value=9.3e-14 Score=133.72 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=69.5
Q ss_pred eecceEeecCceEEEEEEEEecCC-CeEEEEeCCEE-----ecc----CC-ccceee-ccC---CceeeeeeEEEEEecC
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDPE-PTILWLLNGQV-----LHN----SS-FDLLEE-EEG---DALFEKSVSITLFNVT 330 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P~-p~v~W~~~g~~-----l~~----~~-~~~~~~-~~~---~~~~~~~~~L~I~~v~ 330 (610)
.+..+.+.+|+.+.|.|.+.+.|. +.+.|++++.. +.. .. ...... ..+ .......+.|.|.+++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~ 85 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ 85 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence 456778899999999999999995 89999985432 110 00 000000 000 0001122469999999
Q ss_pred CCCCeEEEEEeecCC-cceeEEEEEEcCccccccccccCC
Q psy10487 331 DLDAGEYTCYAENIR-GNASGEISLDLPEINLATTLSKTD 369 (610)
Q Consensus 331 ~~D~G~Y~C~a~N~~-G~~~~~~~L~V~~~~~~p~~~~~~ 369 (610)
.+|+|.|+|.|.|.. |.....+.|.|...+..|.+...+
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~ 125 (231)
T 2pet_A 86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNK 125 (231)
T ss_dssp GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECC
T ss_pred cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCC
Confidence 999999999999997 788888888886554444444433
No 310
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.42 E-value=4.9e-13 Score=133.03 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=65.8
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCE-----EeccCCccceeeccCCceee---eeeEEEEEecCC
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ-----VLHNSSFDLLEEEEGDALFE---KSVSITLFNVTD 331 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~-----~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~ 331 (610)
.+.+...+..+.+.+|++++|.|.+.+.|.|.+.|++++. .+............++.... ....|+|.+++.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 4667777888999999999999999999999999998542 11110000000000111111 123899999999
Q ss_pred CCCeEEEEEeecCCcc-eeEEEEEEcCc
Q psy10487 332 LDAGEYTCYAENIRGN-ASGEISLDLPE 358 (610)
Q Consensus 332 ~D~G~Y~C~a~N~~G~-~~~~~~L~V~~ 358 (610)
+|+|.|+|.|.|..+. ....+.|.|..
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~ 119 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKG 119 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC--
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEec
Confidence 9999999999998765 33345677643
No 311
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.42 E-value=1.4e-13 Score=135.35 Aligned_cols=195 Identities=13% Similarity=0.093 Sum_probs=99.8
Q ss_pred eeecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEec---c-C--Cccceee--ccCCceee-----eeeEEEEE
Q psy10487 265 IKESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLH---N-S--SFDLLEE--EEGDALFE-----KSVSITLF 327 (610)
Q Consensus 265 ~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~---~-~--~~~~~~~--~~~~~~~~-----~~~~L~I~ 327 (610)
..+..+.+.+|++++|.|.+.|.| .+.|.|+|+ +..+. . . ....... ..++.... ....|+|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS 84 (256)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence 345678899999999999999886 689999994 22211 0 0 0000000 00111111 13589999
Q ss_pred ecCCCCCeEEEEEeecCCcc-----eeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeE-----EEEEE
Q psy10487 328 NVTDLDAGEYTCYAENIRGN-----ASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMS-----FCVCR 397 (610)
Q Consensus 328 ~v~~~D~G~Y~C~a~N~~G~-----~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 397 (610)
+++.+|+|.|+|.|.|..|. ....+.|.|.. .+.+...+....+..+..+.+.|.+.+.+.. .+.|.
T Consensus 85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~---~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~ 161 (256)
T 1nqb_A 85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS---DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWY 161 (256)
T ss_dssp SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC---CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEE
T ss_pred cCChhhCEEEEEEEeeccCccceeEEcCceeeeecc---cccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEE
Confidence 99999999999999999773 22346676642 2233333333333322222222221111111 12222
Q ss_pred eee-ccccccc------ccCCcccccc--ccccccceeeeeeeeccCcceeeeecCCCccee-eeeecccccCCC
Q psy10487 398 AHE-HKNKRRK------RKGKMKQSVS--FNDQEKKLLDVSITTTDRHTGSCEALGSQPDME-LIEQSLAMEQPP 462 (610)
Q Consensus 398 ~~~-~~~~~~~------~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v~~~pp 462 (610)
+.. ....... .......... .......|.|.+++.+|+|.|+|.|.|..+... .-..|.|..++|
T Consensus 162 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~~ 236 (256)
T 1nqb_A 162 LQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAAA 236 (256)
T ss_dssp EECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC---
T ss_pred EECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECCCC
Confidence 210 0000000 0000001111 112334799999999999999999999643322 223455554433
No 312
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.42 E-value=3e-13 Score=111.20 Aligned_cols=87 Identities=20% Similarity=0.363 Sum_probs=73.6
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
-+|.+...+....+.+|+.++|.|.+.|.| |.+.|+++|..+....+. . ...+.|.|.+++.+|+|.|+
T Consensus 8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~--~--------~~~~~L~i~~~~~~D~G~Y~ 76 (95)
T 2ckn_A 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRT--R--------ITGEEVEVRDSIPADSGLYA 76 (95)
T ss_dssp CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSE--E--------ECSSEEEESSCCGGGSEEEE
T ss_pred CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCE--E--------EeCCEEEECCCChHHCEEEE
Confidence 356777778888999999999999999998 899999999887654431 1 11348999999999999999
Q ss_pred EEeecCCcceeEEEEEEc
Q psy10487 339 CYAENIRGNASGEISLDL 356 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V 356 (610)
|.|.|..|.....+.|.|
T Consensus 77 C~a~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 77 CVTSSPSGSDTTYFSVNV 94 (95)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEeccCCCcEEEEEEEEE
Confidence 999999999998888876
No 313
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.41 E-value=4.5e-13 Score=126.22 Aligned_cols=171 Identities=14% Similarity=0.177 Sum_probs=97.3
Q ss_pred ceEeecCceEEEEEEEE----ecCCCeEEEEeCCEEeccCCccceeec---cCCce--eeeeeEEEEEecCCCCCeEEEE
Q psy10487 269 MVIREAGGNVTMSCYVY----GDPEPTILWLLNGQVLHNSSFDLLEEE---EGDAL--FEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 269 ~~~v~~G~~v~l~C~~~----g~P~p~v~W~~~g~~l~~~~~~~~~~~---~~~~~--~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
.+.+.+|++++|.|.+. |.|.+.+.|++++..+........... .++.. ....+.|.|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 46788999999999995 568899999999987632111000000 00000 0112489999999999999999
Q ss_pred EeecCCcce-----eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEe---eecccccccccCC
Q psy10487 340 YAENIRGNA-----SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRA---HEHKNKRRKRKGK 411 (610)
Q Consensus 340 ~a~N~~G~~-----~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 411 (610)
.|.|..|.. ...+.|.|......|.+..... ..+. .+.+.|.. .+.+...|.+.+.
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~----~~g~------------~~~l~C~~~~g~P~p~i~W~k~g~ 146 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEI----PTSN------------IRRIICSTSGGFPEPHLSWLENGE 146 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEEC----SSTT------------EEEEEEEEEEESSCEEEEEEESSC
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceEeccC----CCCC------------eEEEEEecCCccCCCEEEEEECCE
Confidence 999988765 3567777744322222221100 0000 11334443 2333334433221
Q ss_pred cccc---ccccccc-ccee---eeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487 412 MKQS---VSFNDQE-KKLL---DVSITTTDRHTGSCEALGSQPDMELIEQS 455 (610)
Q Consensus 412 ~~~~---~~~~~~~-~~L~---i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 455 (610)
.-.. ....+.+ +.+. +..+..+|.|.|+|.|.|..|..+..+..
T Consensus 147 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 147 ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred ECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 1110 0011122 2222 24556679999999999999987776553
No 314
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.41 E-value=1.3e-12 Score=138.62 Aligned_cols=181 Identities=17% Similarity=0.124 Sum_probs=103.4
Q ss_pred eeeeecceEeecCceEEEEEEEEecCCC----eEEEEeCC--EEe---ccCCccceeeccCCceee---eeeEEEEEecC
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDPEP----TILWLLNG--QVL---HNSSFDLLEEEEGDALFE---KSVSITLFNVT 330 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p----~v~W~~~g--~~l---~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~ 330 (610)
+...+..+.+.+|++++|.|.+.|.|.| .|.|++++ ..+ ............++.... ....|.|.+++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (438)
T 1qgc_4 4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE 83 (438)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence 4556778889999999999999998874 89999963 221 100000000000110001 13589999999
Q ss_pred CCCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-cc---ccc
Q psy10487 331 DLDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-HK---NKR 405 (610)
Q Consensus 331 ~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~ 405 (610)
.+|+|.|+|.|.|..|.. ...+.|.|.....+|.+......... +.+. .+.+.|...+ .+ ...
T Consensus 84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~-----------~~g~-~~~l~C~~~g~~p~~~~v~ 151 (438)
T 1qgc_4 84 ADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQ-----------LTSG-GASVVCFLNNFYPKDINVK 151 (438)
T ss_dssp GGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHH-----------HHTT-EEEEEEEEEEEBSSCEEEE
T ss_pred CcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhh-----------ccCC-ceEEEEEEccccCCCcEEE
Confidence 999999999999998753 44566666433334433321111000 0111 1234454433 22 233
Q ss_pred ccccCCcc-cc------ccccc-----cccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487 406 RKRKGKMK-QS------VSFND-----QEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS 455 (610)
Q Consensus 406 ~~~~~~~~-~~------~~~~~-----~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 455 (610)
|.+.+..- .. ..... ....|.|.+++.+|+|.|+|.|.|..|.......+
T Consensus 152 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~ 213 (438)
T 1qgc_4 152 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 213 (438)
T ss_dssp EEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEE
T ss_pred EEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccc
Confidence 43322110 00 00001 12478999999999999999999998885444443
No 315
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.41 E-value=3.8e-13 Score=135.66 Aligned_cols=168 Identities=13% Similarity=0.074 Sum_probs=100.9
Q ss_pred cceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487 268 SMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG 346 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 346 (610)
..+.+.+|+.++|.|.+. |.|.|.+.|+|++..+....+....... ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~~~n~~g 82 (312)
T 2y23_A 9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKG------NKTKMTFKDLGMDDLGIYSCDVTDTDG 82 (312)
T ss_dssp CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEET------TEEEEEESSCCGGGCEEEEEEESSSCC
T ss_pred eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeC------CEEEEEECcCCccCCEEEEEEEEeCCC
Confidence 346778999999999885 6899999999999998765432222211 124899999999999999999999998
Q ss_pred ceeEEEEEEcCcccc---------ccccccCCc-ceeehhhhHHHHHHHHHhheeEEEEEEee---ecccccccccCCc-
Q psy10487 347 NASGEISLDLPEINL---------ATTLSKTDS-WYMLVLGISVCVVSVIVSIGMSFCVCRAH---EHKNKRRKRKGKM- 412 (610)
Q Consensus 347 ~~~~~~~L~V~~~~~---------~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~- 412 (610)
... ++.+.|.+... .|.+..... ...+..+.. +.+.|... +.+...|.+.+..
T Consensus 83 ~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~------------v~l~C~~~~~~p~~~v~W~~~~~~i 149 (312)
T 2y23_A 83 IAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQ------------VRFWMQAEKLSGNAKVNYIFNEKEI 149 (312)
T ss_dssp CCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSC------------EEEEEEESCCCSSCEEEEEETTEEE
T ss_pred cEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCC------------EEEEEEEEeCCCCCEEEEEECCEEC
Confidence 654 56666632110 222222111 222222111 12233332 2222233222111
Q ss_pred --ccccccc----ccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487 413 --KQSVSFN----DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ 454 (610)
Q Consensus 413 --~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 454 (610)
....... .....|.|.+++.+|+|.|+|.|.|..+.......
T Consensus 150 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 197 (312)
T 2y23_A 150 FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVV 197 (312)
T ss_dssp CSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEE
T ss_pred eeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEE
Confidence 0111111 11234999999999999999999886655544333
No 316
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.41 E-value=8.6e-13 Score=111.27 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=72.1
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCC---CeEEEEeCCEEeccCCc-cceeecc--CCceeeeeeEEEEEecCCCC
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPE---PTILWLLNGQVLHNSSF-DLLEEEE--GDALFEKSVSITLFNVTDLD 333 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~---p~v~W~~~g~~l~~~~~-~~~~~~~--~~~~~~~~~~L~I~~v~~~D 333 (610)
.|.+...|..+.+.+|++++|.|.+.|.|. |.|.|+|++........ ....... ........+.|.|.+++.+|
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 366777788899999999999999999998 99999998732221110 0011000 00001235689999999999
Q ss_pred CeEEEEEeecCCcceeEEEEEEcC
Q psy10487 334 AGEYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 334 ~G~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
+|.|+|.|.|..|.+++++.|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999883
No 317
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.41 E-value=8.6e-13 Score=129.26 Aligned_cols=177 Identities=16% Similarity=0.151 Sum_probs=99.4
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecC-----CCeEEEEeCC--EEe---ccCCccceeeccCCceee---eeeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLLNG--QVL---HNSSFDLLEEEEGDALFE---KSVSITL 326 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-----~p~v~W~~~g--~~l---~~~~~~~~~~~~~~~~~~---~~~~L~I 326 (610)
.+.+...+..+.+.+|++++|.|.+.|.| .+.|.|+|++ ..+ ............++.... ....|+|
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 113 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI 113 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence 45566667888999999999999999988 6899999954 111 100000000000111111 1238999
Q ss_pred EecCCCCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c--
Q psy10487 327 FNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K-- 402 (610)
Q Consensus 327 ~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 402 (610)
.+++.+|+|.|+|.|.|..+.. ...+.|.|.....+|.+...+..... ..+. .+...|...+. +
T Consensus 114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~-----------~~g~-~v~L~C~~~g~~p~~ 181 (252)
T 3bkj_L 114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQ-----------LTSG-GASVVCFLNNFYPKD 181 (252)
T ss_dssp SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHH-----------HHHT-EEEEEEEEEEEBSSC
T ss_pred CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhh-----------cCCC-cEEEEEEEeeEeCCC
Confidence 9999999999999999987643 23456766443333333321111000 0111 12344544432 2
Q ss_pred -cccccccCCccc-c-c----cccccc------cceeeeeeeeccCcceeeeecCCCcc
Q psy10487 403 -NKRRKRKGKMKQ-S-V----SFNDQE------KKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 403 -~~~~~~~~~~~~-~-~----~~~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
...|.+.+..-. . . .....+ ..|.|..+..+|+|.|+|.|.|....
T Consensus 182 ~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 182 INVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp CEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred cEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 133443322100 0 0 001112 24888888888999999999997654
No 318
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.40 E-value=1.3e-12 Score=124.12 Aligned_cols=169 Identities=14% Similarity=0.172 Sum_probs=95.2
Q ss_pred eecceEeecCceEEEEEEEEec-------CCCeEEEEeCCEEe------ccCCcc--ceeeccCCcee-----eeeeEEE
Q psy10487 266 KESMVIREAGGNVTMSCYVYGD-------PEPTILWLLNGQVL------HNSSFD--LLEEEEGDALF-----EKSVSIT 325 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~-------P~p~v~W~~~g~~l------~~~~~~--~~~~~~~~~~~-----~~~~~L~ 325 (610)
.+..+.+.+|++++|.|.+.+. +.+.+.|+|++... ...... ......++..+ ....+|.
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 85 (214)
T 2zg1_A 6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS 85 (214)
T ss_dssp CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence 4667889999999999999864 67899999986521 100000 00000000000 1134799
Q ss_pred EEecCCCCCeEEEEEeecCCcce----eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-
Q psy10487 326 LFNVTDLDAGEYTCYAENIRGNA----SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE- 400 (610)
Q Consensus 326 I~~v~~~D~G~Y~C~a~N~~G~~----~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 400 (610)
|.+++.+|+|.|+|.+.|..+.. ...+.|.|......|.+..... +..+.. +...|...+
T Consensus 86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~---~~~G~~------------v~L~C~~~~~ 150 (214)
T 2zg1_A 86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEP---LESGRP------------TRLSCSLPGS 150 (214)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CC---CCTTCC------------EEEEEECTTC
T ss_pred EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCcc---ccCCCe------------EEEEEEeccC
Confidence 99999999999999999987432 2467777755443444432111 111111 133444322
Q ss_pred -----cccccccccCCccccccccccccceeeeeeeeccCcceeeeecCCCccee
Q psy10487 401 -----HKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDME 450 (610)
Q Consensus 401 -----~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 450 (610)
.+...|.+....... ........|.|..+..+|.|.|+|.|.|..|...
T Consensus 151 ~~~~p~p~v~W~~~~~~~~~-~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~ 204 (214)
T 2zg1_A 151 CEAGPPLTFSWTGNALSPLD-PETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVT 204 (214)
T ss_dssp CSCSSCCEEEEESSTTSSSC-SSCCCSSEEEECCCTTCCSCEEEEEEECC----C
T ss_pred CCCCCCceEEEeCCCCccCC-CCceeEEEEEEecccHHcCcEEEEEEEeCCCCcc
Confidence 222333332211100 1113456799999988899999999999865533
No 319
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.40 E-value=3.7e-14 Score=134.91 Aligned_cols=173 Identities=12% Similarity=0.061 Sum_probs=92.9
Q ss_pred ecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec---cCCccceeeccCCceee---eeeEEEEEecCCCCCeEEE
Q psy10487 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH---NSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~---~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~ 338 (610)
+..+.+.+|++++|.|.+.+.|.|.+.|+++ |..+. ...........++.... ....|.|.+++.+|+|.|+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 6778899999999999999999999999984 33221 00000000000110111 2248999999999999999
Q ss_pred EEeecCCc-c--eeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec----ccccccccC
Q psy10487 339 CYAENIRG-N--ASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH----KNKRRKRKG 410 (610)
Q Consensus 339 C~a~N~~G-~--~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 410 (610)
|.|.|..+ . ....+.|.|... ..+|.+...........+.. +...|...+. +...|.+.+
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~------------v~L~C~~~g~~p~~~~v~W~k~g 153 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNK------------ATLVCLVNDFYPGSATVTWKANG 153 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTE------------ECCCEEEEEEBSSCCEEEEEETT
T ss_pred EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCc------------eEEEEEEEeeECCccEEEEEECC
Confidence 99997322 2 123345555322 12333332221111111111 1222322221 122333221
Q ss_pred Cccc-ccc----c-----cccccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487 411 KMKQ-SVS----F-----NDQEKKLLDVSITTTDRHTGSCEALGSQPDMEL 451 (610)
Q Consensus 411 ~~~~-~~~----~-----~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 451 (610)
..-. ... . ....+.|.|.++..+|+|.|+|.|.|..+..+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (212)
T 1nfd_E 154 ATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK 204 (212)
T ss_dssp EEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred eEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence 1100 000 0 011246899999999999999999998876433
No 320
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=5.1e-14 Score=147.41 Aligned_cols=134 Identities=21% Similarity=0.214 Sum_probs=58.6
Q ss_pred CCccEEEeecCCCCCCC----hhhhcccCCCCccEEEcccCCCcccchhhhc----CC---------CCCcEEEccCCCC
Q psy10487 55 SDIQVLDLNNNKISYLT----KEAFKSIGLLNLQRIYLKNSGIREVHRDTFK----YL---------TILVEVDLSDNQI 117 (610)
Q Consensus 55 ~~L~~L~L~~n~i~~l~----~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~----~l---------~~L~~LdLs~n~l 117 (610)
.+|++|+|++|.|.... ...+. .+++|++|+|++|.+.......|. .+ ++|++|+|++|+|
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHH--hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 35566666666555421 12233 345555555555555433222222 12 4555555555555
Q ss_pred CCCCc----ccccCCCCCcEEEeeCccccc-----cCcCcCCCCCCccEEEccCcccc----ccCHHHhhcCcccccccc
Q psy10487 118 AWLHQ----DTFLGNDRLKVLYLNGNPITE-----LRAGQFPKLPYLKTIELQHCQIH----SVHKDALIHLTALESLNL 184 (610)
Q Consensus 118 ~~l~~----~~f~~l~~L~~L~Ls~N~l~~-----l~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L 184 (610)
..... ..|..+++|+.|+|++|.++. +.+..+..+++|+.|+|++|.|+ ...+..+..+++|+.|+|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 42111 123344455555555554441 11223344445555555555442 111233444444455555
Q ss_pred cccccc
Q psy10487 185 NGNRLK 190 (610)
Q Consensus 185 ~~n~l~ 190 (610)
++|.+.
T Consensus 252 ~~n~i~ 257 (386)
T 2ca6_A 252 NDCLLS 257 (386)
T ss_dssp TTCCCC
T ss_pred CCCCCc
Confidence 544444
No 321
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.40 E-value=1.2e-12 Score=117.97 Aligned_cols=96 Identities=24% Similarity=0.365 Sum_probs=80.0
Q ss_pred cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
..+|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|+|++..+....+........ ..+.|.|.+++..|+|.|
T Consensus 39 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y 113 (154)
T 1fhg_A 39 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEE-----GNCSLTISEVCGDDDAKY 113 (154)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTT-----CEEEEEESSCCGGGCEEE
T ss_pred CCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCC-----CeEEEEECCCChhcCEEE
Confidence 357888888888999999999999999999999999999999887654432222111 135899999999999999
Q ss_pred EEEeecCCcceeEEEEEEcCc
Q psy10487 338 TCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~ 358 (610)
+|.|.|..|.....+.|.|..
T Consensus 114 ~C~a~N~~G~~~~~~~l~V~~ 134 (154)
T 1fhg_A 114 TCKAVNSLGEATCTAELLVET 134 (154)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCeEEEEEEEEEeC
Confidence 999999999999999998843
No 322
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=1.2e-13 Score=141.49 Aligned_cols=132 Identities=21% Similarity=0.185 Sum_probs=55.0
Q ss_pred CCCccEEEcccCCCcccchhhhcCCCCCcEEEccCC-CCCCC-CcccccCCCCCcEEEeeCc-ccccc-CcCcCCCCC-C
Q psy10487 80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN-QIAWL-HQDTFLGNDRLKVLYLNGN-PITEL-RAGQFPKLP-Y 154 (610)
Q Consensus 80 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n-~l~~l-~~~~f~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~-~ 154 (610)
+++|++|+|++|.+....+..|..+++|++|+|++| .++.. .+..+.++++|++|+|++| .++.. ....+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 444455555444444433344444444555555444 33321 1222344444555555444 44431 111233344 4
Q ss_pred ccEEEccCcc--cc-ccCHHHhhcCcccccccccccc-ccccCcccccCCCcccEEecCCC
Q psy10487 155 LKTIELQHCQ--IH-SVHKDALIHLTALESLNLNGNR-LKHLSESVFFPTPNLKTLSLDGN 211 (610)
Q Consensus 155 L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~l~l~~N 211 (610)
|+.|+|++|. ++ ...+..+.++++|+.|++++|. ++......+..+++|+.|++++|
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4555554442 22 1112233344445555555444 33222223344444555555444
No 323
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.39 E-value=2.5e-13 Score=132.80 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=63.7
Q ss_pred CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--E---EeccCCccceeeccCCcee---eeeeEEEEEecCCC
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--Q---VLHNSSFDLLEEEEGDALF---EKSVSITLFNVTDL 332 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~---~l~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~ 332 (610)
..+...+..+.+.+|++++|.|.+.|.|.|.+.|+|.. . .+............++... .....|.|.+++.+
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 45556677888999999999999999999999999843 1 1110000000000000000 11237999999999
Q ss_pred CCeEEEEEeecCCcce-eEEEEEEcCc
Q psy10487 333 DAGEYTCYAENIRGNA-SGEISLDLPE 358 (610)
Q Consensus 333 D~G~Y~C~a~N~~G~~-~~~~~L~V~~ 358 (610)
|+|.|+|.|.|..+.. ...+.|.|..
T Consensus 85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~ 111 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTFGGGTKLEIRR 111 (250)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred hCEEEEEEEeeCCCceECCCEEEEEEC
Confidence 9999999999987653 3345566643
No 324
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.39 E-value=2.3e-13 Score=138.60 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=74.3
Q ss_pred CCCCCCCCCCCccCCCccccccc--ccccCCCcee-eeecceEeecCceEEEEEEEEec-CCC---eEEEEeCC-EEecc
Q psy10487 232 YSHPLSCTEPGMLQTKHWDDVKA--QEFACPPNVT-IKESMVIREAGGNVTMSCYVYGD-PEP---TILWLLNG-QVLHN 303 (610)
Q Consensus 232 ~~~~~~C~a~~~l~g~~~~~v~~--~~~~c~P~i~-~~~~~~~v~~G~~v~l~C~~~g~-P~p---~v~W~~~g-~~l~~ 303 (610)
+.+.|+|.+.+...... ..+.. ......|.+. ..+....+.+|+.++|.|.+.|. |.| .|.|++++ ..+..
T Consensus 83 d~g~Y~C~a~n~~~~~~-~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~ 161 (323)
T 2wqr_A 83 SDRTYTCQVTYQGHTFE-DSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH 161 (323)
T ss_dssp TTCCEEEEEEETTEEEE-EEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCC
T ss_pred CCCcEEEEEEeCCCCcc-eeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccc
Confidence 67889999876543211 11111 1111234443 34455567889999999999986 567 89999965 43332
Q ss_pred CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487 304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354 (610)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 354 (610)
... ......++.+...+.|.|.+++.+|+|.|+|.|.|..+.......+
T Consensus 162 ~~~--~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v 210 (323)
T 2wqr_A 162 STR--KEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRST 210 (323)
T ss_dssp CCC--EEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEE
T ss_pred ccC--CCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEE
Confidence 211 1111112223456789999999999999999999987544333333
No 325
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.38 E-value=1.3e-12 Score=106.94 Aligned_cols=87 Identities=21% Similarity=0.109 Sum_probs=68.9
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.|...+.++.+.+|++++|.|.+.+ |.|.+.|+|||..+....+.....+.. ...|.|.+++.+|+|.|+|
T Consensus 5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~------~~~L~I~~v~~~D~G~Y~C 77 (93)
T 1waa_A 5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGK------KHILILHNCQLGMTGEVSF 77 (93)
T ss_dssp CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETT------EEEEEECSCCGGGCEEEEE
T ss_pred CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECC------EEEEEECCCChhhCEEEEE
Confidence 577888889999999999999999987 568999999999987665433222111 2489999999999999999
Q ss_pred EeecCCcceeEEEEEEcC
Q psy10487 340 YAENIRGNASGEISLDLP 357 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~ 357 (610)
.|.|. ..++.|.|.
T Consensus 78 ~a~n~----~~sa~L~V~ 91 (93)
T 1waa_A 78 QAANT----KSAANLKVK 91 (93)
T ss_dssp EETTE----EEEEEEEEE
T ss_pred EECCC----cEEEEEEEE
Confidence 99884 456667663
No 326
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.38 E-value=1.2e-13 Score=134.03 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=94.4
Q ss_pred eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec---c-CCccceeec--cCCcee----eeeeEEEEEecC
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH---N-SSFDLLEEE--EGDALF----EKSVSITLFNVT 330 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~---~-~~~~~~~~~--~~~~~~----~~~~~L~I~~v~ 330 (610)
+...+..+.+.+|++++|.|. .+.|.|.|.|+|+ +.... . ......... .++... .....|+|.+++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT 81 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence 455677889999999999999 8899999999995 21110 0 000000000 001001 113489999999
Q ss_pred CCCCeEEEEEeecCCcce-----eEEEEEEcCcccc---------ccccccCCcceeehhhhHHHHHHHHHhheeEEEEE
Q psy10487 331 DLDAGEYTCYAENIRGNA-----SGEISLDLPEINL---------ATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVC 396 (610)
Q Consensus 331 ~~D~G~Y~C~a~N~~G~~-----~~~~~L~V~~~~~---------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (610)
.+|+|.|+|.|.|..|.. ...+.|.|..... .+.+...+....+..+..+.+.|.+.+.+...+.|
T Consensus 82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W 161 (238)
T 2p1y_A 82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW 161 (238)
T ss_dssp GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence 999999999999987631 1234565533221 01233333333333333322222222222222233
Q ss_pred Eeeec-ccccccc---c---CCccccccc----cccccceeeeeeeeccCcceeeeecCCC
Q psy10487 397 RAHEH-KNKRRKR---K---GKMKQSVSF----NDQEKKLLDVSITTTDRHTGSCEALGSQ 446 (610)
Q Consensus 397 ~~~~~-~~~~~~~---~---~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~A~N~~ 446 (610)
.+... ....+.. . ......+.. ......|.|.+++.+|+|.|+|.|.|..
T Consensus 162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 22211 0000000 0 000111111 1224579999999999999999999974
No 327
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=6.1e-13 Score=110.53 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=72.2
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.|...+.++.+.+|+.++|.|.+ .|.|.+.|+|+|..+....+........ ...|.|.+++.+|+|.|+|
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~------~~~L~I~~v~~~D~G~Y~C 78 (100)
T 2yuz_A 7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGR------IHKLVIANALTEDEGDYVF 78 (100)
T ss_dssp CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSS------EEEEEESSCCGGGCSEEEE
T ss_pred CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCC------EEEEEECCCChhhCEEEEE
Confidence 5777778889999999999999999 8999999999999987665433322211 2479999999999999999
Q ss_pred EeecCCcceeEEEEEEcCc
Q psy10487 340 YAENIRGNASGEISLDLPE 358 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~~ 358 (610)
.|.|. ..+.++.|.|.+
T Consensus 79 ~a~N~--~~~~~a~L~V~~ 95 (100)
T 2yuz_A 79 APDAY--NVTLPAKVHVIS 95 (100)
T ss_dssp EESSS--CCCEEEEEEEEC
T ss_pred EEcCC--CeeEEEEEEEeC
Confidence 99998 556777777743
No 328
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.38 E-value=8e-14 Score=133.62 Aligned_cols=90 Identities=14% Similarity=0.202 Sum_probs=64.9
Q ss_pred cCCCceeeeecceE--eecCceEEEEEEEEec---CC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCC
Q psy10487 258 ACPPNVTIKESMVI--REAGGNVTMSCYVYGD---PE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTD 331 (610)
Q Consensus 258 ~c~P~i~~~~~~~~--v~~G~~v~l~C~~~g~---P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 331 (610)
..+|.+...+.... +.+|++++|.|.+.|. |. +.|.|+|++..+...... ......++.+...+.|.|.+++.
T Consensus 7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~ 85 (218)
T 2rgs_A 7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ-THREDYNSTIRVVSTLPIQHQDW 85 (218)
T ss_dssp --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEE-EEEETTTTEEEEEEEEECCHHHH
T ss_pred CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccc-cccccCCCeEEEEEEEEEcHHHc
Confidence 45677777665544 7899999999999988 44 799999999877543211 11111122334557899999999
Q ss_pred CCCeEEEEEeecCCcce
Q psy10487 332 LDAGEYTCYAENIRGNA 348 (610)
Q Consensus 332 ~D~G~Y~C~a~N~~G~~ 348 (610)
+|+|.|+|.|.|..+..
T Consensus 86 ~D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 86 MSGKEFKCKVNNKDLPS 102 (218)
T ss_dssp HTTCCEEEEEEETTCSS
T ss_pred CCCCeEEEEEECCcCCC
Confidence 99999999999998764
No 329
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.38 E-value=1.6e-12 Score=127.63 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=99.6
Q ss_pred CCceeeeecceEeecCceEEEEEEEEe--cCCCeEEEEeC--CEEec---cCC-c-cc-eeec--cCCceee-----eee
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLN--GQVLH---NSS-F-DL-LEEE--EGDALFE-----KSV 322 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~--g~~l~---~~~-~-~~-~~~~--~~~~~~~-----~~~ 322 (610)
+|.+...+..+.+.+|++++|.|.+.+ .|.+.+.|++. +.... ... . .. .... .++.... ...
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 85 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA 85 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence 456667788999999999999999998 47889999973 21110 000 0 00 0000 0011111 124
Q ss_pred EEEEEecCCCCCeEEEEEeecC------------CcceeEEEEEEcCcccc------------ccccccCCcceeehhhh
Q psy10487 323 SITLFNVTDLDAGEYTCYAENI------------RGNASGEISLDLPEINL------------ATTLSKTDSWYMLVLGI 378 (610)
Q Consensus 323 ~L~I~~v~~~D~G~Y~C~a~N~------------~G~~~~~~~L~V~~~~~------------~p~~~~~~~~~~~~~~~ 378 (610)
.|+|.+++.+|+|.|.|.|.|. .+.....+.|.|..... ++.+...+....+..+.
T Consensus 86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 165 (256)
T 3juy_B 86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE 165 (256)
T ss_dssp EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence 7999999999999999999997 33444556777754322 23333334333333333
Q ss_pred HHHHHHHHHhhee-EEEEEEeee-ccccccccc------CCcccccc--ccccccceeeeeeeeccCcceeeeecCCCc
Q psy10487 379 SVCVVSVIVSIGM-SFCVCRAHE-HKNKRRKRK------GKMKQSVS--FNDQEKKLLDVSITTTDRHTGSCEALGSQP 447 (610)
Q Consensus 379 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~------~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G 447 (610)
.+.+.|.+.+... ..+.|.+.. ......... ........ .......|.|.+++.+|+|.|.|.|.|..+
T Consensus 166 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 166 RATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp CEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred CEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 3222222111111 112222111 000000000 00001111 112234699999999999999999999544
No 330
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.38 E-value=5.5e-13 Score=117.77 Aligned_cols=86 Identities=20% Similarity=0.324 Sum_probs=66.6
Q ss_pred ecceEeecCceEEEEEEEEecCCCeEEEEeCCE----------------------------EeccCCccceeeccCCcee
Q psy10487 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ----------------------------VLHNSSFDLLEEEEGDALF 318 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~----------------------------~l~~~~~~~~~~~~~~~~~ 318 (610)
+..+.+.+|++++|.|.+.|.|.|.|+|+|++. .+............+
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~~---- 100 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK---- 100 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET----
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeCC----
Confidence 567889999999999999999999999999882 221111111111000
Q ss_pred eeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 319 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
..+.|.|.+++.+|+|.|+|+|.|.+|.+..++.|.|.
T Consensus 101 -~~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 101 -DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp -TEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred -CEEEEEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 12479999999999999999999999999999999873
No 331
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.38 E-value=3.7e-12 Score=125.04 Aligned_cols=183 Identities=13% Similarity=0.082 Sum_probs=94.0
Q ss_pred eeeecceEeecCceEEEEEEEEec--CCCeEEEEeCC--EE--ec----cCCccceee--ccCCceee-----eeeEEEE
Q psy10487 264 TIKESMVIREAGGNVTMSCYVYGD--PEPTILWLLNG--QV--LH----NSSFDLLEE--EEGDALFE-----KSVSITL 326 (610)
Q Consensus 264 ~~~~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g--~~--l~----~~~~~~~~~--~~~~~~~~-----~~~~L~I 326 (610)
...+..+.+.+|++++|.|.+.|. |.+.+.|+|.. .. .. .... .... ..++.... ....|+|
T Consensus 12 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~L~I 90 (257)
T 3gkz_A 12 LQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGS-TYYNPSLKSRISITRDTSKNQVYLQL 90 (257)
T ss_dssp EEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCC-EEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred EECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCc-EEecccccccEEEEEecCCceEEEEE
Confidence 345677789999999999999984 57899999832 11 11 0000 0000 00111111 1237999
Q ss_pred EecCCCCCeEEEEEeecCC----cceeEEEEEEcCcc-----------ccccccccCCcceeehhhhHHHHHHHHHhhee
Q psy10487 327 FNVTDLDAGEYTCYAENIR----GNASGEISLDLPEI-----------NLATTLSKTDSWYMLVLGISVCVVSVIVSIGM 391 (610)
Q Consensus 327 ~~v~~~D~G~Y~C~a~N~~----G~~~~~~~L~V~~~-----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (610)
.+++.+|+|.|+|.|.|.. +.....+.|.|... ...+.+...+....+..+..+.+.|.+.+...
T Consensus 91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~ 170 (257)
T 3gkz_A 91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVS 170 (257)
T ss_dssp CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCC
T ss_pred CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCcc
Confidence 9999999999999999973 22334566777543 12234444444333333333222221111111
Q ss_pred E-EEEEEeee-cccccccc------cCCccccccc--cccccceeeeeeeeccCcceeeeecCCCc
Q psy10487 392 S-FCVCRAHE-HKNKRRKR------KGKMKQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQP 447 (610)
Q Consensus 392 ~-~~~~~~~~-~~~~~~~~------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G 447 (610)
. .+.|.+.. ........ .......+.. ......|.|.+++.+|+|.|.|.|.|...
T Consensus 171 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 236 (257)
T 3gkz_A 171 SSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFP 236 (257)
T ss_dssp GGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred ceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCc
Confidence 1 11221110 00000000 0000011111 11233699999999999999999998543
No 332
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.37 E-value=7.4e-13 Score=109.77 Aligned_cols=84 Identities=27% Similarity=0.404 Sum_probs=68.3
Q ss_pred cceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487 268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN 347 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 347 (610)
..+.+.+|+.++|.|.+.|.|.|.+.|++++..+............ ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 90 (100)
T 3caf_A 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKGNYTCVVENEYGS 90 (100)
T ss_dssp CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE-----GGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEe-----cCeEEEEEccCCcCCCEEEEEEEEeCCCE
Confidence 4567889999999999999999999999999988765432111110 11248999999999999999999999999
Q ss_pred eeEEEEEEc
Q psy10487 348 ASGEISLDL 356 (610)
Q Consensus 348 ~~~~~~L~V 356 (610)
...++.|.|
T Consensus 91 ~~~~~~l~V 99 (100)
T 3caf_A 91 INHTYHLDV 99 (100)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999988876
No 333
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.37 E-value=9e-13 Score=105.53 Aligned_cols=80 Identities=23% Similarity=0.360 Sum_probs=63.9
Q ss_pred ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG 346 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 346 (610)
...+.+.+|++++|.|.+.| |.|.|.|+|||..+....+.....+.. ...|.|.+++.+|+|.|+|.|.|
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~n--- 72 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGA------RQVLRVQGARSGDAGEYLCDAPQ--- 72 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSS------CEEEEESSCSSTTCEEEEEECTT---
T ss_pred CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCC------eEEEEecCCCCcccEEEEEEECC---
Confidence 35678899999999999976 999999999999998776544433322 23799999999999999999855
Q ss_pred ceeEEEEEEcC
Q psy10487 347 NASGEISLDLP 357 (610)
Q Consensus 347 ~~~~~~~L~V~ 357 (610)
.+.++.|.|.
T Consensus 73 -~~~~a~l~V~ 82 (84)
T 2lu7_A 73 -DSRIFLVSVE 82 (84)
T ss_dssp -TCEEEEEEEC
T ss_pred -EEEEEEEEEE
Confidence 4566777774
No 334
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=106.06 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=71.4
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
++.+...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... +.|.|.+++.+|+|.|+|
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---------------~~L~i~~v~~~d~G~Y~C 67 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------------KLYMVPYVDLEHQGTYWC 67 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS---------------SEEEESSCCGGGCEEEEE
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC---------------CeEEECCCCHHhCEEEEE
Confidence 46677778888999999999999999999999999999988765431 389999999999999999
Q ss_pred EeecCCccee-EEEEEEcCc
Q psy10487 340 YAENIRGNAS-GEISLDLPE 358 (610)
Q Consensus 340 ~a~N~~G~~~-~~~~L~V~~ 358 (610)
.|.|..|... ..+.|.|.+
T Consensus 68 ~a~n~~g~~~s~~~~l~V~~ 87 (91)
T 3bfo_A 68 HVYNDRDSQDSKKVEIIIDE 87 (91)
T ss_dssp EEECSSCEEECCCEEEEEC-
T ss_pred EEEcCCCCEEeeeEEEEEeh
Confidence 9999999754 567777743
No 335
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.37 E-value=3.9e-13 Score=132.06 Aligned_cols=182 Identities=17% Similarity=0.174 Sum_probs=94.6
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEeccC------Ccccee--eccCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLHNS------SFDLLE--EEEGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~~~------~~~~~~--~~~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.| .+.+.|++. +..+..- ...... ...++.... ....|+|.+
T Consensus 8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 87 (256)
T 3umt_A 8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS 87 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence 34456789999999999999876 789999973 2211100 000000 000111111 123699999
Q ss_pred cCCCCCeEEEEEeecC----CcceeEEEEEEcCccc-------------cccccccCCcceeehhhhHHHHHHHHHhhee
Q psy10487 329 VTDLDAGEYTCYAENI----RGNASGEISLDLPEIN-------------LATTLSKTDSWYMLVLGISVCVVSVIVSIGM 391 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~----~G~~~~~~~L~V~~~~-------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (610)
++.+|+|.|.|.|.|. .+.....+.|.|.+.. ..+.+...+....+..+..+.+.|.+.+.+.
T Consensus 88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~ 167 (256)
T 3umt_A 88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG 167 (256)
T ss_dssp CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT
T ss_pred CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC
Confidence 9999999999999998 3444556677775320 1334444444333333333222222111111
Q ss_pred EEEEEEeee-ccccccc------ccCCcccccc--ccccccceeeeeeeeccCcceeeeecCCCc
Q psy10487 392 SFCVCRAHE-HKNKRRK------RKGKMKQSVS--FNDQEKKLLDVSITTTDRHTGSCEALGSQP 447 (610)
Q Consensus 392 ~~~~~~~~~-~~~~~~~------~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G 447 (610)
..+.|.+.. ....... .......... .......|.|.+++.+|+|.|.|.|.|..+
T Consensus 168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 232 (256)
T 3umt_A 168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSP 232 (256)
T ss_dssp TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSS
T ss_pred cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCC
Confidence 111222211 0000000 0000001111 112233699999999999999999999644
No 336
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.37 E-value=5.1e-13 Score=128.99 Aligned_cols=177 Identities=16% Similarity=0.186 Sum_probs=82.0
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EEe---ccCCccceeeccCCce---eeeeeEEEEEecCC
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QVL---HNSSFDLLEEEEGDAL---FEKSVSITLFNVTD 331 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~l---~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~ 331 (610)
.+.+...+..+.+.+|++++|.|.+.|.|.+.+.|++++ ..+ ............++.. ......|.|.+++.
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 102 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS 102 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence 455666678888999999999999999999999999843 211 1000000000000000 11234899999999
Q ss_pred CCCeEEEEEeecCCcce-eEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-cc---ccc
Q psy10487 332 LDAGEYTCYAENIRGNA-SGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-KN---KRR 406 (610)
Q Consensus 332 ~D~G~Y~C~a~N~~G~~-~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~ 406 (610)
+|+|.|+|.|.|..+.. ...+.|.|.....+|.+...+..... ..+. .+...|...+. +. ..|
T Consensus 103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~-----------~~g~-~v~L~C~~~g~~p~~~~v~W 170 (233)
T 3bqu_C 103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQ-----------LTSG-GASVVCFLNNFYPKDINVKW 170 (233)
T ss_dssp CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHH-----------HHTT-EEEEEEEEEEEBSSCEEEEE
T ss_pred HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHh-----------hcCC-ceEEEEEEccccCCceEEEE
Confidence 99999999999987643 22344555433333333321111000 0111 12334444332 21 233
Q ss_pred cccCCcc-cc-c----ccccc------ccceeeeeeeeccCcceeeeecCCCcc
Q psy10487 407 KRKGKMK-QS-V----SFNDQ------EKKLLDVSITTTDRHTGSCEALGSQPD 448 (610)
Q Consensus 407 ~~~~~~~-~~-~----~~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~ 448 (610)
.+.+..- .. . ..... ...|.|..+..+|+|.|+|.|.|....
T Consensus 171 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 171 KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp EEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred EECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 3322110 00 0 00011 235777778888999999999997554
No 337
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.36 E-value=2.1e-12 Score=123.07 Aligned_cols=171 Identities=12% Similarity=0.082 Sum_probs=92.9
Q ss_pred ecceEeecCceEEEEEEEE-ecC-CCeEEEEeCC--EEec---cCCccceeeccCCceee---eeeEEEEEecCCCCCeE
Q psy10487 267 ESMVIREAGGNVTMSCYVY-GDP-EPTILWLLNG--QVLH---NSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAGE 336 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~-g~P-~p~v~W~~~g--~~l~---~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~ 336 (610)
|..+.+.+|++++|.|.+. +.+ .+.|.|++++ ..+. ...........++.... ....|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 5667889999999999964 443 6899999943 2111 00000000000110111 13489999999999999
Q ss_pred EEEEeecCCc--ceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c---cccccccC
Q psy10487 337 YTCYAENIRG--NASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K---NKRRKRKG 410 (610)
Q Consensus 337 Y~C~a~N~~G--~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~ 410 (610)
|+|.|.|..| .....+.|.|.....+|.+......... +.+. .+...|...+. + ...|.+.+
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~-----------~~g~-~v~L~C~~~g~~P~~~~v~W~k~g 154 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQ-----------LKSG-TASVVCLLNNFYPREAKVQWKVDN 154 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHH-----------HHTT-EEEEEEEEEEEBSSCCEEEEEETT
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhh-----------ccCC-cEEEEEEEEeEcCCceEEEEEECC
Confidence 9999999987 2233456666433334433321111000 0111 12344544432 2 23343332
Q ss_pred Cccc-c-c----cccccc------cceeeeeeeeccCcceeeeecCCCcce
Q psy10487 411 KMKQ-S-V----SFNDQE------KKLLDVSITTTDRHTGSCEALGSQPDM 449 (610)
Q Consensus 411 ~~~~-~-~----~~~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 449 (610)
..-. . . .....+ ..|.|..+..+|+|.|+|.|.|.....
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (216)
T 2xzc_L 155 ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205 (216)
T ss_dssp EECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred eecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence 2110 0 0 001111 257888888889999999999987653
No 338
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.36 E-value=1.7e-13 Score=146.15 Aligned_cols=120 Identities=13% Similarity=0.200 Sum_probs=78.6
Q ss_pred CCCCCCCCCccCCCcc-ccccc---------------ccccCCCceeeeecc-eE-eecCceEEEEEEEEecC----CCe
Q psy10487 234 HPLSCTEPGMLQTKHW-DDVKA---------------QEFACPPNVTIKESM-VI-REAGGNVTMSCYVYGDP----EPT 291 (610)
Q Consensus 234 ~~~~C~a~~~l~g~~~-~~v~~---------------~~~~c~P~i~~~~~~-~~-v~~G~~v~l~C~~~g~P----~p~ 291 (610)
+.|+|.+.+..+.... ..+.. .....+|.+...+.. .. +.+|+.++|.|.+.|.| .+.
T Consensus 196 g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~ 275 (444)
T 1igt_B 196 QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQ 275 (444)
T ss_dssp SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCE
T ss_pred CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeE
Confidence 8899998776654211 11111 112235665343332 22 58899999999999984 369
Q ss_pred EEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEE
Q psy10487 292 ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354 (610)
Q Consensus 292 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 354 (610)
|+|++++..+........... .++.+...+.|.|.+++.+|+|.|+|.|.|..|....+..+
T Consensus 276 v~W~k~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v 337 (444)
T 1igt_B 276 ISWFVNNVEVHTAQTQTHRED-YNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTI 337 (444)
T ss_dssp EEEEETTEECSSTTCBCCEEE-CSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEE
T ss_pred EEEEECCccccCcccccceeC-CCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEE
Confidence 999999988764432211111 11123456789999999999999999999999977444444
No 339
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.36 E-value=1.6e-12 Score=123.42 Aligned_cols=173 Identities=12% Similarity=0.096 Sum_probs=94.9
Q ss_pred ecceEeecCceEEEEEEEEecC---CCeEEEEeCC--EEec---cCCccceeeccCCceee---eeeEEEEEecCCCCCe
Q psy10487 267 ESMVIREAGGNVTMSCYVYGDP---EPTILWLLNG--QVLH---NSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAG 335 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~g~P---~p~v~W~~~g--~~l~---~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G 335 (610)
+..+.+.+|++++|.|.+.|.| .|.|.|++++ ..+. ...........++.... ....|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 86 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA 86 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence 7778899999999999999988 5899999852 2221 00000000000110111 1248999999999999
Q ss_pred EEEEEeecCCcce-eEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc----ccccccc
Q psy10487 336 EYTCYAENIRGNA-SGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK----NKRRKRK 409 (610)
Q Consensus 336 ~Y~C~a~N~~G~~-~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 409 (610)
.|+|.|.|..|.. ...+.|.|.... .+|.+...+..... ..+. .+...|...+.+ ...|.+.
T Consensus 87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~-----------~~g~-~v~L~C~~~g~~p~~~~v~W~k~ 154 (212)
T 1q0x_L 87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEE-----------LSTA-KATLVCTITDFYPGVVTVDWKVD 154 (212)
T ss_dssp EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHH-----------HTTT-EEEEEEEEEEEBSSCCEEEEEET
T ss_pred EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHH-----------ccCC-cEEEEEEEEEEeCCCeEEEEEEC
Confidence 9999999988743 234566663221 23333221111000 0111 123344443321 2234332
Q ss_pred CCcc-ccc----ccccc------ccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487 410 GKMK-QSV----SFNDQ------EKKLLDVSITTTDRHTGSCEALGSQPDMEL 451 (610)
Q Consensus 410 ~~~~-~~~----~~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 451 (610)
+..- ... ..... ...|.|..+..+|+|.|+|.|.|.....+.
T Consensus 155 g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 207 (212)
T 1q0x_L 155 GTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK 207 (212)
T ss_dssp TEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred CEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence 2110 000 00111 125777788888999999999998765443
No 340
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.36 E-value=9.7e-14 Score=148.60 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCCccC------C--C--cc-cccccccc---cCCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEE
Q psy10487 231 LYSHPLSCTEPGMLQ------T--K--HW-DDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILW 294 (610)
Q Consensus 231 l~~~~~~C~a~~~l~------g--~--~~-~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W 294 (610)
.|.+.|.|.+.+..+ + . .+ ........ ..+|.+...+....+.+|+.++|.|.+.|. |. |.|.|
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W 168 (457)
T 1hzh_H 89 ADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 168 (457)
T ss_dssp GGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEE
T ss_pred ccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEE
Confidence 467889998876542 0 0 01 11111111 124666555545557899999999999987 75 89999
Q ss_pred EeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487 295 LLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 295 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 356 (610)
++++..+......... ..++.+...+.|.|.++..+| |.|+|.|.|..|.......+.+
T Consensus 169 ~k~~~~~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~ 227 (457)
T 1hzh_H 169 NSGALTSGVHTFPAVL--QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEP 227 (457)
T ss_dssp TTTTBCTTEEEEEEEE--CTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred EeCCEeccceEcCceE--CCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecc
Confidence 9998654322111111 122233445689999999999 9999999998887665555544
No 341
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.36 E-value=4.8e-12 Score=130.03 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=98.2
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEecc------CCccceeec--cCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLHN------SSFDLLEEE--EGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~~------~~~~~~~~~--~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.+ .+.|.|+|+ +..+.. ......... .++..+. ..+.|+|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (344)
T 1za6_B 6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS 85 (344)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence 45567889999999999999874 689999996 332210 000000000 0111111 135899999
Q ss_pred cCCCCCeEEEEEeecCCcceeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c---c
Q psy10487 329 VTDLDAGEYTCYAENIRGNASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K---N 403 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~ 403 (610)
++.+|+|.|+|.|.|..+.....+.|.|... ..+|.+...+....+..+ ..+.+.|...+. + .
T Consensus 86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g------------~~v~L~C~~~g~~P~~~~ 153 (344)
T 1za6_B 86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSG------------GTAALGCLVKDYFPEPVT 153 (344)
T ss_dssp CCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSS------------SEEEEEEEEEEEBSSCCC
T ss_pred CCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCC------------CcEEEEEEEeeEECCCeE
Confidence 9999999999999997766666677877532 223332211111111111 112344544433 2 3
Q ss_pred ccccccCCccccc---cccc------cccceeeeeeeeccCcceeeeecCCCcceeeee
Q psy10487 404 KRRKRKGKMKQSV---SFND------QEKKLLDVSITTTDRHTGSCEALGSQPDMELIE 453 (610)
Q Consensus 404 ~~~~~~~~~~~~~---~~~~------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 453 (610)
..|.+.+...... .... ....|.|.++..+| |.|+|.|.|..|......
T Consensus 154 v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~ 211 (344)
T 1za6_B 154 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK 211 (344)
T ss_dssp EEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEE
T ss_pred EEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceE
Confidence 3344333210000 0001 12267888888778 999999999998754433
No 342
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.36 E-value=3.2e-12 Score=123.90 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=64.3
Q ss_pred ceeeeecceEeecCceEEEEEEEEecC----CCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEEEEec
Q psy10487 262 NVTIKESMVIREAGGNVTMSCYVYGDP----EPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSITLFNV 329 (610)
Q Consensus 262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P----~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~I~~v 329 (610)
.+...+..+.+.+|++++|.|.+.|.| .|.|.|+|+. .. +............++.... ....|.|.++
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV 82 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence 355667788999999999999999998 8899999952 21 1110000000000111111 1237999999
Q ss_pred CCCCCeEEEEEeecCCcc-eeEEEEEEcCc
Q psy10487 330 TDLDAGEYTCYAENIRGN-ASGEISLDLPE 358 (610)
Q Consensus 330 ~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~ 358 (610)
+.+|+|.|+|.|.|..|. ....+.|.|..
T Consensus 83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~ 112 (240)
T 1moe_A 83 EADDVATYYCQQTNEDPYTFGGGTKLEIKG 112 (240)
T ss_dssp CGGGCEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred ChhhCEEEEEEEccCCceeecCCEEEEEec
Confidence 999999999999998775 34456677754
No 343
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=111.75 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=72.6
Q ss_pred CCceeeeecceEeecCceEEEEEEEEec---CCCeEEEEeCCE-EeccC-Cccceeec-cCCceeeeeeEEEEEecCCCC
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQ-VLHNS-SFDLLEEE-EGDALFEKSVSITLFNVTDLD 333 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~---P~p~v~W~~~g~-~l~~~-~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D 333 (610)
.+.+...|..+.+.+|++++|.|.+.|. |.|.|.|+|+.. .+... .....+.. ..+........|+|.+++.+|
T Consensus 12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 91 (118)
T 2edn_A 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD 91 (118)
T ss_dssp SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence 3556667888999999999999999885 799999999742 22211 11111110 011111235799999999999
Q ss_pred CeEEEEEeecCCcceeEEEEEEcCc
Q psy10487 334 AGEYTCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 334 ~G~Y~C~a~N~~G~~~~~~~L~V~~ 358 (610)
+|.|+|+|.|..|..++.+.|.|.+
T Consensus 92 ~G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 92 RGYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp CSCEEEEEECSSCEEEEEECCEEEC
T ss_pred CEEEEEEEEEcCCcEEEEEEEEEEc
Confidence 9999999999999999999999853
No 344
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.36 E-value=2e-12 Score=129.04 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=60.9
Q ss_pred eeeecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEec---c-C--Cccceee--ccCCceee-----eeeEEEE
Q psy10487 264 TIKESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVLH---N-S--SFDLLEE--EEGDALFE-----KSVSITL 326 (610)
Q Consensus 264 ~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l~---~-~--~~~~~~~--~~~~~~~~-----~~~~L~I 326 (610)
...|..+.+.+|++++|.|.+.|.| .+.+.|+|++ ..+. . . ....... ..++.... ....|+|
T Consensus 30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 109 (282)
T 1qok_A 30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL 109 (282)
T ss_dssp EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence 3456678899999999999999885 6899999953 1110 0 0 0000000 00111111 1358999
Q ss_pred EecCCCCCeEEEEEeecCCcc-----eeEEEEEEcCc
Q psy10487 327 FNVTDLDAGEYTCYAENIRGN-----ASGEISLDLPE 358 (610)
Q Consensus 327 ~~v~~~D~G~Y~C~a~N~~G~-----~~~~~~L~V~~ 358 (610)
.+++.+|+|.|.|.|.|..|. ....+.|.|..
T Consensus 110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~ 146 (282)
T 1qok_A 110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSS 146 (282)
T ss_dssp CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC
T ss_pred CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEec
Confidence 999999999999999999872 12344666643
No 345
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.35 E-value=9.4e-13 Score=125.09 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=72.9
Q ss_pred CCceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
+|.+.... ...+.+|+.++|.|.+.|. |.|.|.|+|+|..+....+. .. . .....|.|.+++.+|+|.|+
T Consensus 117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~--~~--~----~~~~~L~I~~v~~~D~G~Y~ 187 (207)
T 3rbs_A 117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH--DF--K----DGICTLLITEFSKKDAGIYE 187 (207)
T ss_dssp SSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC--CC--S----SEEEEEEETTCCGGGCEEEE
T ss_pred CCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce--Ec--C----CCEEEEEECCCCcccCEEEE
Confidence 56666555 4788999999999999999 99999999999998765431 11 1 12347999999999999999
Q ss_pred EEeecCCcceeEEEEEEc
Q psy10487 339 CYAENIRGNASGEISLDL 356 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V 356 (610)
|.|.|..|.+.+++.|.+
T Consensus 188 C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 188 VILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp EEEEETTEEEEEEEEECC
T ss_pred EEEEcCCCEEEEEEEEec
Confidence 999999999999998876
No 346
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.35 E-value=4e-13 Score=132.26 Aligned_cols=186 Identities=17% Similarity=0.159 Sum_probs=90.8
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEE---eccCC--ccceeeccC---Cce-----eeeeeEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQV---LHNSS--FDLLEEEEG---DAL-----FEKSVSI 324 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~---l~~~~--~~~~~~~~~---~~~-----~~~~~~L 324 (610)
+|.+...+..+.+.+|++++|.|.+.+.|.+.+.|++. +.. +.... ........+ +.. ......|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 35666777889999999999999999999999999982 211 11000 000000000 000 0123479
Q ss_pred EEEecCCCCCeEEEEEeecCCc---ceeEEEEEEcCcccc--------------ccccccCCcceeehhhhHHHHHHHHH
Q psy10487 325 TLFNVTDLDAGEYTCYAENIRG---NASGEISLDLPEINL--------------ATTLSKTDSWYMLVLGISVCVVSVIV 387 (610)
Q Consensus 325 ~I~~v~~~D~G~Y~C~a~N~~G---~~~~~~~L~V~~~~~--------------~p~~~~~~~~~~~~~~~~~~~~~~~~ 387 (610)
.|.+++.+|+|.|.|.|.|..| .....+.|.|..... .+.+...+....+..+..+.+.|.+.
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~ 161 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE 161 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence 9999999999999999999877 334456666643211 22334444434433333333333222
Q ss_pred hh-eeEEEEEEeeec-cccccccc------CCccccccc----cccccceeeeeeeeccCcceeeeecCC
Q psy10487 388 SI-GMSFCVCRAHEH-KNKRRKRK------GKMKQSVSF----NDQEKKLLDVSITTTDRHTGSCEALGS 445 (610)
Q Consensus 388 ~~-~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~A~N~ 445 (610)
.. ....+.|.+... ........ ......+.. ......|.|.+++.+|+|.|.|.|.+.
T Consensus 162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 21 122223322211 11000000 000111111 123456999999999999999999864
No 347
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=5e-13 Score=150.93 Aligned_cols=169 Identities=17% Similarity=0.089 Sum_probs=89.0
Q ss_pred EEEcCCCCCCccCcccCCCccEEEeecCCCCCC---------ChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCc
Q psy10487 38 SALCKDANFTALPSTLDSDIQVLDLNNNKISYL---------TKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILV 108 (610)
Q Consensus 38 ~~~C~~~~l~~lP~~l~~~L~~L~L~~n~i~~l---------~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~ 108 (610)
.++...+++..+|.. .++.++|+.|.|..+ .+..|. .+.+|+.|+|++|.|..++...| .+.+|+
T Consensus 177 ~l~L~~n~~~~~~~~---~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~ 250 (727)
T 4b8c_D 177 KIELFANGKDEANQA---LLQHKKLSQYSIDEDDDIENRMVMPKDSKY--DDQLWHALDLSNLQIFNISANIF-KYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCS
T ss_pred eEEeeCCCCCcchhh---HhhcCccCcccccCccccccceecChhhhc--cCCCCcEEECCCCCCCCCChhhc-CCCCCC
Confidence 344444444444432 234444444444432 244454 56777777777777777665544 677777
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccc
Q psy10487 109 EVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNR 188 (610)
Q Consensus 109 ~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 188 (610)
+|+|++|+|+.++ ..|.++++|++|+|++|.|+.+ +..|..|++|+.|+|++|.|..++. .|..+.+|+.|+|++|.
T Consensus 251 ~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 251 RLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSC
T ss_pred EEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCc
Confidence 7777777777654 4567777777777777777766 3456777777777777777776643 37777777777777777
Q ss_pred ccccCcccccCCCc-ccEEecCCCcccc
Q psy10487 189 LKHLSESVFFPTPN-LKTLSLDGNPWCC 215 (610)
Q Consensus 189 l~~~~~~~~~~~~~-L~~l~l~~N~~~c 215 (610)
|++..+..+..+.. +..+++.+|.+..
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccC
Confidence 77665554433211 1235566666554
No 348
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.35 E-value=6.5e-14 Score=134.22 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=101.7
Q ss_pred ecceEeecCceEEEEEEEEe-cCCCe----EEEEeCCEEeccCC----ccceeeccCCcee--------eeeeEEEEEec
Q psy10487 267 ESMVIREAGGNVTMSCYVYG-DPEPT----ILWLLNGQVLHNSS----FDLLEEEEGDALF--------EKSVSITLFNV 329 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~g-~P~p~----v~W~~~g~~l~~~~----~~~~~~~~~~~~~--------~~~~~L~I~~v 329 (610)
+..+.+.+|++++|.|.+.+ .+.+. |.|++++....... ....+...++..+ ...+.|.|.++
T Consensus 6 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v 85 (221)
T 3eow_R 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGL 85 (221)
T ss_dssp CCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCS
T ss_pred CCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccC
Confidence 44567889999999999954 55554 99999864221100 0000000111111 12458999999
Q ss_pred CCCCCeEEEEEeecCC-cceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEee---eccccc
Q psy10487 330 TDLDAGEYTCYAENIR-GNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAH---EHKNKR 405 (610)
Q Consensus 330 ~~~D~G~Y~C~a~N~~-G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 405 (610)
+.+|+|.|+|.+.|.. |.....+.|.|.. +|.+..........+... ..+.|... +.+...
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~---~P~~~~~~~~~~~~g~~~------------~~l~C~~~~g~P~p~v~ 150 (221)
T 3eow_R 86 RVEDEGSYTCLFVTFPQGSRSVDIWLRVLA---KPQNTAEVQKVQLTGEPV------------PMARCVSTGGRPPAQIT 150 (221)
T ss_dssp SCCCCSCBEEEEEESSSCSCEEECCCCCCC---CCEEEEEEECCCCCSSSC------------CEEEEEEESCSSCCCEE
T ss_pred ChHHCeEEEEEEEeCCCCceEEEEEEEEEE---CCCceeecCCcccCCceE------------EEEEEECCCccCCCeeE
Confidence 9999999999999987 7788888888754 222221111111111111 01334322 233333
Q ss_pred ccccCCcccc--c------cccccccceeeeeeeeccCcceeeeecCCCcceeeeeeccccc
Q psy10487 406 RKRKGKMKQS--V------SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 406 ~~~~~~~~~~--~------~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
|.+....... . ........|.|..+..+|.|.|+|.|.|.++.......+....
T Consensus 151 W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v~~~~ 212 (221)
T 3eow_R 151 WHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTV 212 (221)
T ss_dssp EECSSSCCCCCEEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEECCCC
T ss_pred EEeCCCCCCccceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEEEEEE
Confidence 4322111100 0 0011234688899999999999999999998766666655443
No 349
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.35 E-value=3.2e-12 Score=121.33 Aligned_cols=173 Identities=12% Similarity=0.087 Sum_probs=92.5
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEec---c-CCcc-ceee--ccCCceee-----eeeEEEEEec
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLH---N-SSFD-LLEE--EEGDALFE-----KSVSITLFNV 329 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~---~-~~~~-~~~~--~~~~~~~~-----~~~~L~I~~v 329 (610)
.+..+.+.+|++++|.|.+.|.| .+.+.|+|+ +.... . .... .... ..++..+. ....|+|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 85 (210)
T 3d9a_H 6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV 85 (210)
T ss_dssp EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence 46667889999999999999876 489999985 22211 0 0000 0000 00111111 1248999999
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c---cc
Q psy10487 330 TDLDAGEYTCYAENIRGNASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K---NK 404 (610)
Q Consensus 330 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~ 404 (610)
+.+|+|.|+|.|.|.. .....+.|.|... ..+|.+...+....+..+. .+...|...+. + ..
T Consensus 86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~------------~v~L~C~~~g~~P~p~~v 152 (210)
T 3d9a_H 86 TTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNS------------MVTLGCLVKGYFPEPVTV 152 (210)
T ss_dssp CGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSS------------EEEEEEEEEEEBSSCCEE
T ss_pred CcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCC------------cEEEEEEEeeEecCCcEE
Confidence 9999999999999964 2223355666421 2223322111101111111 11334444333 2 33
Q ss_pred cccccCCccc-----ccc---ccccccceeeeeeeeccCcceeeeecCCCcceeee
Q psy10487 405 RRKRKGKMKQ-----SVS---FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELI 452 (610)
Q Consensus 405 ~~~~~~~~~~-----~~~---~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~ 452 (610)
.|.+.+.... ... .......|.|..+..+| |.|+|.|.|..|.....
T Consensus 153 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 153 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp EEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred EEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence 3433322100 000 00112357777777656 99999999999986553
No 350
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.35 E-value=1.3e-12 Score=140.69 Aligned_cols=124 Identities=19% Similarity=0.310 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCCccCCC----cc-cccccccc---cCCCceeeeecceEeecCceEEEEEEEEec-CC-C-eEEEEeCCE
Q psy10487 231 LYSHPLSCTEPGMLQTK----HW-DDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-P-TILWLLNGQ 299 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~----~~-~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p-~v~W~~~g~ 299 (610)
.+.+.|.|.+.+..+.. .+ ..+..... .-+|.+...+. ..+.+|+.++|.|.+.|. |. | .|.|++++.
T Consensus 90 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~ 168 (475)
T 1iga_A 90 EDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQ 168 (475)
T ss_pred hhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEEEEcCCCc
Confidence 36778999887654210 00 11111111 12455544332 223689999999999997 66 5 999999875
Q ss_pred EeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEc
Q psy10487 300 VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDL 356 (610)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V 356 (610)
....... .......++.+...+.|.|..+...|+|.|+|.|.|..|.. ...+.+.|
T Consensus 169 ~~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V 225 (475)
T 1iga_A 169 GVTARNF-PPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPV 225 (475)
T ss_pred ccceEeC-CceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEeccc
Confidence 3221111 01110122234455689999999999999999999998742 33444444
No 351
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.35 E-value=1.5e-12 Score=120.81 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=94.9
Q ss_pred cceEeecCceEEEEEEEEe-cCCCeEEEEeC-CEEeccCCcc-ce-ee-cc--CCcee-eeeeEEEEEecCCCCCeEEEE
Q psy10487 268 SMVIREAGGNVTMSCYVYG-DPEPTILWLLN-GQVLHNSSFD-LL-EE-EE--GDALF-EKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~-g~~l~~~~~~-~~-~~-~~--~~~~~-~~~~~L~I~~v~~~D~G~Y~C 339 (610)
..+.+.+|++++|.|.+.+ .+.+.|.|+|+ +..+...... .. .. .. ++..+ ...+.|+|.+++.+|+|.|+|
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C 86 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence 4567899999999999854 45789999994 4333211110 00 01 11 11111 234689999999999999999
Q ss_pred EeecCCcceeEEEEEEcCccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecccccccccCCcccccccc
Q psy10487 340 YAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFN 419 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (610)
.+.+.. .....+.|.|.+....|.+..... . +...|.....+.. ...|.+.+..+. .
T Consensus 87 ~v~~~~-~~~~~~~L~V~~~~~~P~i~~~~~--------~------------v~L~C~~~~gp~p-~i~W~~~~~~l~-~ 143 (180)
T 2dru_A 87 RMLHET-EDQWKITMEVYEMVSKPMIYWECS--------N------------ATLTCEVLEGTDV-ELKLYQGKEHLR-S 143 (180)
T ss_dssp EEESSS-EEEEEEEEEEECCCCCCEEEEEGG--------G------------TEEEEECSSCTTC-EEEEEETTEEEE-E
T ss_pred EEEcCC-eEEEEEEEEEECCCCCCEEEecCC--------C------------EEEEEEeCCCCCC-EEEEEECCeECc-C
Confidence 998876 667788888855433333322110 0 1334443111221 122332222222 1
Q ss_pred ccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487 420 DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS 455 (610)
Q Consensus 420 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 455 (610)
..+..|.+. . .+|+|.|+|.|.|..|..+....+
T Consensus 144 ~~~~~l~~~-~-~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 144 LRQKTMSYQ-W-TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp ESSSEEEEE-C-SCCSSCEEEEEEETTEEEEEEECC
T ss_pred CCCCEEEEE-E-hhcCccEEEEEecCcCccccceeE
Confidence 223344442 2 679999999999999987665443
No 352
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.34 E-value=3.6e-13 Score=130.09 Aligned_cols=192 Identities=14% Similarity=0.044 Sum_probs=94.7
Q ss_pred CceeeeecceEeecCceEEEEEEEEecCC-C-eEEEEeCC--EEe---ccCCccceeeccCCceee---eeeEEEEEecC
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGDPE-P-TILWLLNG--QVL---HNSSFDLLEEEEGDALFE---KSVSITLFNVT 330 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~-p-~v~W~~~g--~~l---~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~ 330 (610)
+.+.. +..+.+.+|++++|.|.+.|.+. + .+.|+|++ ..+ ............++.... ....|.|.+++
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 99 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR 99 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence 33344 66778899999999999998654 4 79999853 211 100000000000110111 23489999999
Q ss_pred CCCCeEEEEEeecCCcc---eeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhh-ee-EEEEEEeeecccc
Q psy10487 331 DLDAGEYTCYAENIRGN---ASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSI-GM-SFCVCRAHEHKNK 404 (610)
Q Consensus 331 ~~D~G~Y~C~a~N~~G~---~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 404 (610)
.+|+|.|+|.|.|..|. ....+.|.|.... .+|.+...+.......+..+.+.|.+.+. +. ..+.|++.++.-.
T Consensus 100 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~ 179 (234)
T 2j6e_L 100 SEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVK 179 (234)
T ss_dssp STTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECC
T ss_pred HHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECC
Confidence 99999999999999882 2334556663221 23333221111111111111111211111 11 1122222111100
Q ss_pred cccccCC-ccccccccccccceeeeeeeeccCcceeeeecCCCcceeeee
Q psy10487 405 RRKRKGK-MKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIE 453 (610)
Q Consensus 405 ~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 453 (610)
....... ....-........|.|..+..+|+|.|+|.|.|..+..+.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 229 (234)
T 2j6e_L 180 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 229 (234)
T ss_dssp SSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred CCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence 0000000 000000001123588888888999999999999887754433
No 353
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=5.6e-13 Score=136.52 Aligned_cols=173 Identities=20% Similarity=0.166 Sum_probs=129.4
Q ss_pred cEEEcCCCCCCc--cCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccC-CCccc-chhhhcCCCCCcEE
Q psy10487 37 KSALCKDANFTA--LPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS-GIREV-HRDTFKYLTILVEV 110 (610)
Q Consensus 37 ~~~~C~~~~l~~--lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n-~l~~i-~~~~f~~l~~L~~L 110 (610)
+.++..++.++. +|..+ ..+|++|+|++|.++......+. .+++|++|+|++| .++.. .+..+..+++|++|
T Consensus 96 ~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 455555555542 44322 24788888888877655555666 6899999999999 67753 34557889999999
Q ss_pred EccCC-CCCCC-CcccccCCC-CCcEEEeeCcc--ccc-cCcCcCCCCCCccEEEccCcc-ccccCHHHhhcCccccccc
Q psy10487 111 DLSDN-QIAWL-HQDTFLGND-RLKVLYLNGNP--ITE-LRAGQFPKLPYLKTIELQHCQ-IHSVHKDALIHLTALESLN 183 (610)
Q Consensus 111 dLs~n-~l~~l-~~~~f~~l~-~L~~L~Ls~N~--l~~-l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 183 (610)
+|++| +++.. .+..+..++ +|++|+|++|. ++. ..+..+..+++|+.|+|++|. ++......+..+++|+.|+
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 99999 88864 245577888 99999999994 442 112345678999999999999 7766667888999999999
Q ss_pred ccccc-ccccCcccccCCCcccEEecCCC
Q psy10487 184 LNGNR-LKHLSESVFFPTPNLKTLSLDGN 211 (610)
Q Consensus 184 L~~n~-l~~~~~~~~~~~~~L~~l~l~~N 211 (610)
+++|. +.......+..+++|+.|++.+|
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99995 33222235778899999999998
No 354
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.34 E-value=2.4e-12 Score=125.49 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=62.8
Q ss_pred ceeeeecceEeecCceEEEEEEEEecC-----CCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEEEEe
Q psy10487 262 NVTIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSITLFN 328 (610)
Q Consensus 262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P-----~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~I~~ 328 (610)
.+...+..+.+.+|++++|.|.+.|.| .+.+.|+++. .. +............++.... ....|.|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 82 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR 82 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence 355567788999999999999999988 6899999842 21 1100000000000110111 124899999
Q ss_pred cCCCCCeEEEEEeecCCcc-eeEEEEEEcCc
Q psy10487 329 VTDLDAGEYTCYAENIRGN-ASGEISLDLPE 358 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~ 358 (610)
++.+|+|.|.|.|.|..+. ....+.|.|..
T Consensus 83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~ 113 (247)
T 1svz_A 83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKG 113 (247)
T ss_dssp CCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred CCHHHCEEEEEEEccCCccEECCCEEEEEEC
Confidence 9999999999999998764 23345677643
No 355
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.34 E-value=3.3e-12 Score=124.38 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=63.4
Q ss_pred ceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEEEEecCCCC
Q psy10487 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSITLFNVTDLD 333 (610)
Q Consensus 262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D 333 (610)
.+...+..+.+.+|++++|.|.+.|.|.|.+.|+++. .. +............++.... ....|+|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence 4556678889999999999999999999999999842 11 1100000000000111111 13489999999999
Q ss_pred CeEEEEEeecCCcce-eEEEEEEcCc
Q psy10487 334 AGEYTCYAENIRGNA-SGEISLDLPE 358 (610)
Q Consensus 334 ~G~Y~C~a~N~~G~~-~~~~~L~V~~ 358 (610)
+|.|.|.|.|..+.. ...+.|.|..
T Consensus 83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~ 108 (242)
T 2znx_A 83 FGMYFCQQSNSXPYTFGGGTKLEITG 108 (242)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred CEEEEEeEecCCceEECCCEEEEEcC
Confidence 999999999986542 2345666643
No 356
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=8.4e-13 Score=149.13 Aligned_cols=134 Identities=24% Similarity=0.246 Sum_probs=114.3
Q ss_pred CCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEE
Q psy10487 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL 134 (610)
Q Consensus 55 ~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L 134 (610)
..|+.|+|++|.|..++...| ++.+|++|+|++|.|+.++ ..|.++.+|++|+|++|+|+.+ +..|.++.+|++|
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~---~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L 298 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIF---KYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYF 298 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGG---GCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEE
T ss_pred CCCcEEECCCCCCCCCChhhc---CCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEE
Confidence 579999999999999998887 4899999999999999775 6789999999999999999987 4668999999999
Q ss_pred EeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCc-cccccccccccccccCc
Q psy10487 135 YLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT-ALESLNLNGNRLKHLSE 194 (610)
Q Consensus 135 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~ 194 (610)
+|++|.|+.++.. |..|++|+.|+|++|.|....+..+..+. .+..|+|++|.++...+
T Consensus 299 ~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 299 YFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp ECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 9999999988664 99999999999999999988777765542 22346777777765443
No 357
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.33 E-value=5.6e-12 Score=121.49 Aligned_cols=183 Identities=13% Similarity=0.047 Sum_probs=99.3
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEec----cC--Cccceeec--cCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVLH----NS--SFDLLEEE--EGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l~----~~--~~~~~~~~--~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.| .+.|.|+|++ ..+. .. ........ .++..+. ....|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (227)
T 1mju_H 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (227)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence 35667889999999999999887 7899999853 2110 00 00000000 1111111 235899999
Q ss_pred cCCCCCeEEEEEeecCCcc-eeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c---
Q psy10487 329 VTDLDAGEYTCYAENIRGN-ASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K--- 402 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 402 (610)
++.+|+|.|.|.+.|..+. ....+.|.|... ..+|.+........+.. +. .+...|...+. +
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~-----------g~-~v~L~C~~~g~~P~p~ 153 (227)
T 1mju_H 86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTS-----------GS-SVTLGCLVKGYFPEPV 153 (227)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------------------CEEEEEEEEEEBSSCC
T ss_pred CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccC-----------CC-cEEEEEEeecEeCCCe
Confidence 9999999999999997542 223456777531 12232221110000000 11 11334444332 2
Q ss_pred cccccccCCccc-----ccc---ccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccccCC
Q psy10487 403 NKRRKRKGKMKQ-----SVS---FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQP 461 (610)
Q Consensus 403 ~~~~~~~~~~~~-----~~~---~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~p 461 (610)
...|.+.+.... .+. .......|.|..+..+| |.|+|.|.|..+.......+.+.++|
T Consensus 154 ~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p 219 (227)
T 1mju_H 154 TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT 219 (227)
T ss_dssp EEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-
T ss_pred EEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCC
Confidence 333433322100 000 00122357777777667 99999999988877777777666544
No 358
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.33 E-value=5e-13 Score=139.86 Aligned_cols=181 Identities=24% Similarity=0.280 Sum_probs=90.0
Q ss_pred cEEEcCCCCCCc-----cCccc--CCCccEEEeecCCCCCCChhhhccc--CC---------CCccEEEcccCCCcccc-
Q psy10487 37 KSALCKDANFTA-----LPSTL--DSDIQVLDLNNNKISYLTKEAFKSI--GL---------LNLQRIYLKNSGIREVH- 97 (610)
Q Consensus 37 ~~~~C~~~~l~~-----lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~--~l---------~~L~~L~L~~n~l~~i~- 97 (610)
+.++..++.++. +|..+ ..+|++|+|++|.|+......+... .+ ++|++|+|++|.+....
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 445555555544 33322 2356666666666543332222210 11 45666666666654211
Q ss_pred h---hhhcCCCCCcEEEccCCCCCC-----CCcccccCCCCCcEEEeeCcccc----ccCcCcCCCCCCccEEEccCccc
Q psy10487 98 R---DTFKYLTILVEVDLSDNQIAW-----LHQDTFLGNDRLKVLYLNGNPIT----ELRAGQFPKLPYLKTIELQHCQI 165 (610)
Q Consensus 98 ~---~~f~~l~~L~~LdLs~n~l~~-----l~~~~f~~l~~L~~L~Ls~N~l~----~l~~~~~~~l~~L~~L~L~~n~l 165 (610)
+ ..|..+++|++|+|++|+|.. +.+..|..+++|+.|+|++|.++ ...+..+..+++|+.|+|++|+|
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 1 244555566666666666552 22224555566666666666653 11122445556666666666665
Q ss_pred cccC----HHHhhc--Cccccccccccccccc-----cCcccccCCCcccEEecCCCcccccC
Q psy10487 166 HSVH----KDALIH--LTALESLNLNGNRLKH-----LSESVFFPTPNLKTLSLDGNPWCCDC 217 (610)
Q Consensus 166 ~~~~----~~~~~~--l~~L~~L~L~~n~l~~-----~~~~~~~~~~~L~~l~l~~N~~~c~c 217 (610)
.... +..+.. +++|+.|+|++|.++. ++...+..+++|+.|++++|++....
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5441 222322 5566666666666655 33333244556666666666665444
No 359
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.33 E-value=2.9e-12 Score=124.84 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=62.1
Q ss_pred ceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC----------------CEEeccCCc-cceeeccCCceeeeeeEE
Q psy10487 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN----------------GQVLHNSSF-DLLEEEEGDALFEKSVSI 324 (610)
Q Consensus 262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~----------------g~~l~~~~~-~~~~~~~~~~~~~~~~~L 324 (610)
.+...+..+.+.+|++++|.|.+.+.|.+.|.|+|. +........ .+...... ......|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L 79 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA---SLTLSTL 79 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE---ETTEEEE
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec---CCCEEEE
Confidence 455667788999999999999999999999999982 111111100 00000000 0113489
Q ss_pred EEEecCCCCCeEEEEEeecCCc----ceeEEEEEEcC
Q psy10487 325 TLFNVTDLDAGEYTCYAENIRG----NASGEISLDLP 357 (610)
Q Consensus 325 ~I~~v~~~D~G~Y~C~a~N~~G----~~~~~~~L~V~ 357 (610)
.|.+++.+|+|.|+|.|.|..+ .....+.|.|.
T Consensus 80 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~ 116 (246)
T 4dzb_B 80 TVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVL 116 (246)
T ss_dssp EECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEE
T ss_pred EECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEe
Confidence 9999999999999999998765 22344566664
No 360
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.32 E-value=8.1e-12 Score=119.65 Aligned_cols=177 Identities=9% Similarity=0.058 Sum_probs=96.4
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EE---ecc-CCc----cceeec--cCCceee-----eeeEEEE
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QV---LHN-SSF----DLLEEE--EGDALFE-----KSVSITL 326 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~---l~~-~~~----~~~~~~--~~~~~~~-----~~~~L~I 326 (610)
.+..+.+.+|++++|.|.+.|.| .+.+.|+++. .. +.. ... ...... .++.... ....|+|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (222)
T 1q9r_B 6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM 85 (222)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence 45567889999999999999876 7899999842 21 100 000 000000 0111111 1358999
Q ss_pred EecCCCCCeEEEEEeecCCc-----ceeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee
Q psy10487 327 FNVTDLDAGEYTCYAENIRG-----NASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE 400 (610)
Q Consensus 327 ~~v~~~D~G~Y~C~a~N~~G-----~~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (610)
.+++.+|+|.|.|.+.|..| .....+.|.|... ..+|.+...........+.. +...|...+
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~------------v~L~C~~~g 153 (222)
T 1q9r_B 86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSM------------VTLGCLVKG 153 (222)
T ss_dssp CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSE------------EEEEEEEEE
T ss_pred CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCc------------EEEEEEEcc
Confidence 99999999999999999775 2223456666432 12233322111101111111 133444433
Q ss_pred ---cc-cccccccCCcccc--ccc--c----ccccceeeeeeeeccCcceeeeecCCCcceeeeeec
Q psy10487 401 ---HK-NKRRKRKGKMKQS--VSF--N----DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQS 455 (610)
Q Consensus 401 ---~~-~~~~~~~~~~~~~--~~~--~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 455 (610)
.+ ...|.+.+..-.. ... . .....|.|..+..+| |.|+|.|.|..|.......+
T Consensus 154 ~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 154 YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 219 (222)
T ss_dssp EBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred EECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence 22 3334333221000 000 0 112357787777789 99999999999986665544
No 361
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.32 E-value=5.4e-12 Score=120.67 Aligned_cols=176 Identities=17% Similarity=0.171 Sum_probs=96.0
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EE---ec-cCC--cc--ceeec--cCCceee-----eeeEEEE
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QV---LH-NSS--FD--LLEEE--EGDALFE-----KSVSITL 326 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~---l~-~~~--~~--~~~~~--~~~~~~~-----~~~~L~I 326 (610)
.+..+.+.+|++++|.|.+.|.| .+.+.|+|++ .. +. ... .. ..... .++.... ....|+|
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (220)
T 1pz5_B 6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence 46677899999999999999877 7899999853 21 11 000 00 00000 0111111 1248999
Q ss_pred EecCCCCCeEEEEEeecCCcce---eEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-
Q psy10487 327 FNVTDLDAGEYTCYAENIRGNA---SGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH- 401 (610)
Q Consensus 327 ~~v~~~D~G~Y~C~a~N~~G~~---~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 401 (610)
.+++.+|+|.|.|.+.|..|.. ...+.|.|... ..+|.+...+.......+.. +...|...+.
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~------------v~L~C~~~g~~ 153 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSS------------VTLGCLVKGYF 153 (220)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSS------------EEEEEEEEEEB
T ss_pred ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCc------------EEEEEEEEEEe
Confidence 9999999999999999986532 23466666432 12333322111111111111 1334443333
Q ss_pred --c-cccccccCCccc--ccc------ccccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487 402 --K-NKRRKRKGKMKQ--SVS------FNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ 454 (610)
Q Consensus 402 --~-~~~~~~~~~~~~--~~~------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 454 (610)
+ ...|.+...... ... .......|.|..+..+| |.|+|.|.|..|..+....
T Consensus 154 P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 154 PEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp SSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred CCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence 3 334443322100 000 00123457777776655 9999999999998666443
No 362
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=1.2e-14 Score=137.29 Aligned_cols=108 Identities=25% Similarity=0.299 Sum_probs=58.8
Q ss_pred CCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEE
Q psy10487 79 GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI 158 (610)
Q Consensus 79 ~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 158 (610)
.+++|++|+|++|.+..++ .|..+++|++|+|++|+|..++. .+..+++|+.|+|++|.++.++ .+..+++|+.|
T Consensus 46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L 120 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVL 120 (198)
T ss_dssp HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEE
T ss_pred cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEE
Confidence 3555666666666555543 45555566666666665555432 3444455566666666555543 24455555555
Q ss_pred EccCccccccCH-HHhhcCccccccccccccccc
Q psy10487 159 ELQHCQIHSVHK-DALIHLTALESLNLNGNRLKH 191 (610)
Q Consensus 159 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 191 (610)
+|++|+|..+.. ..+..+++|+.|++++|.+..
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 555555555432 344555555555555555543
No 363
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.31 E-value=2.8e-12 Score=119.63 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=89.1
Q ss_pred CCCCCCCCCCCCccCCCcc-cccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHW-DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~-~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+..+.... ..+.......+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+........
T Consensus 73 ~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~ 152 (194)
T 2a38_A 73 ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQI 152 (194)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEE
T ss_pred ccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEE
Confidence 3677899988655432211 112222222467777777788899999999999999999999999999998876543222
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 356 (610)
..... ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 153 ~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 153 SQEGD------LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp EEETT------EEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEcCC------EEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 11111 237999999999999999999999999999998887
No 364
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.31 E-value=2.3e-13 Score=139.93 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCCccCCCcccccccccc---cCCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEeccCC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHNSS 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~~~ 305 (610)
.+.+.|.|.+.+... ........... .-+|.+...+....+.+|+.++|.|.+.|. |. |.|.|++++..+....
T Consensus 89 ~D~G~Y~C~~~n~~~-~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~ 167 (344)
T 1za6_B 89 EDTAVYFCTRSLNMA-YWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT 167 (344)
T ss_dssp GGCEEEEEEETTTTC-EECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEE
T ss_pred ccCEEEEEEEecCcc-eecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeE
Confidence 477889998876321 11111111111 134556554444456789999999999997 65 7999999987643221
Q ss_pred ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 353 (610)
..... ..++.+...+.|.|.+++.+| |.|+|.|.|..|.......
T Consensus 168 ~~~~~--~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~ 212 (344)
T 1za6_B 168 FPAVL--QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK 212 (344)
T ss_dssp CCCEE--CTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEE
T ss_pred CCCeE--CCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEe
Confidence 11111 112233455689999998888 9999999999987544433
No 365
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.30 E-value=4.8e-12 Score=124.12 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=58.6
Q ss_pred ecceEeecCceEEEEEEEEec--CCCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEEEEecCCCCCeE
Q psy10487 267 ESMVIREAGGNVTMSCYVYGD--PEPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSITLFNVTDLDAGE 336 (610)
Q Consensus 267 ~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D~G~ 336 (610)
+..+.+.+|++++|.|.+.+. |.+.+.|+|.. .. +............++.... ....|.|.+++.+|+|.
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~ 88 (256)
T 3ux9_B 9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD 88 (256)
T ss_dssp CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence 445788999999999999987 88999999842 11 1100000000000110111 12479999999999999
Q ss_pred EEEEeecCCcc---eeEEEEEEcCc
Q psy10487 337 YTCYAENIRGN---ASGEISLDLPE 358 (610)
Q Consensus 337 Y~C~a~N~~G~---~~~~~~L~V~~ 358 (610)
|.|.|.|..|. ....+.|.|..
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~l~V~~ 113 (256)
T 3ux9_B 89 YYCQVRDNNENEWVFGGGTKLTVLG 113 (256)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEC-
T ss_pred EEEEEEECCCCceEECCCEEEEEEC
Confidence 99999997653 23456677754
No 366
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.30 E-value=4.4e-13 Score=127.29 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=60.6
Q ss_pred Cceeee-ecceE-eecCceEEEEEEEEecC---C-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487 261 PNVTIK-ESMVI-REAGGNVTMSCYVYGDP---E-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334 (610)
Q Consensus 261 P~i~~~-~~~~~-v~~G~~v~l~C~~~g~P---~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 334 (610)
|.+... |.... +.+|++++|.|.+.|.| . +.|.|+|++..+......... ...++.+...+.|.|.+++.+|+
T Consensus 2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~ 80 (207)
T 2vol_A 2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPRE-EQFNSTFRSVSELPIMHQDWLNG 80 (207)
T ss_dssp CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCC-EETTTEEEEEEEEECCHHHHHTT
T ss_pred CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCc-CcCCCcEEEEEEEEEehhHcCCC
Confidence 344443 34334 78999999999999985 2 489999999776532211000 01112334456899999999999
Q ss_pred eEEEEEeecCCcce
Q psy10487 335 GEYTCYAENIRGNA 348 (610)
Q Consensus 335 G~Y~C~a~N~~G~~ 348 (610)
|.|+|.|.|..|..
T Consensus 81 G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 81 KEFKCRVNSAAFPA 94 (207)
T ss_dssp CCEEEEEECTTCSS
T ss_pred CEEEEEEEccCCCC
Confidence 99999999998865
No 367
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.30 E-value=3.3e-12 Score=103.90 Aligned_cols=86 Identities=22% Similarity=0.379 Sum_probs=63.4
Q ss_pred CCceeeeecce--EeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 260 PPNVTIKESMV--IREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 260 ~P~i~~~~~~~--~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
||.+.....+. .+.+|+.++|.|.+.+ |.|.+.|+|||..+..+.+.....+.+ ...|.|.+++.+|+|.|
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~------~~~L~I~~v~~~D~G~Y 76 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGP------HRRLVLPATQPSDGGEF 76 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETT------EEEEEESSCCGGGCSEE
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCC------eEEEEeCCCChhhcEEE
Confidence 44454444444 4468999999999966 999999999999998766544333222 23799999999999999
Q ss_pred EEEeecCCcceeEEEEEEc
Q psy10487 338 TCYAENIRGNASGEISLDL 356 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V 356 (610)
+|.|.|. +.++.|+|
T Consensus 77 ~C~a~n~----~~~~~ltV 91 (91)
T 2lvc_A 77 QCVAGDE----CAYFTVTI 91 (91)
T ss_dssp EEECSSC----EEEEEEEC
T ss_pred EEEEcce----EEEEEEEC
Confidence 9999774 45555554
No 368
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.30 E-value=1.2e-11 Score=105.92 Aligned_cols=81 Identities=27% Similarity=0.327 Sum_probs=65.2
Q ss_pred ceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEE
Q psy10487 276 GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355 (610)
Q Consensus 276 ~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 355 (610)
+...|.|.+.|.|.|.+.|+|+|..+.............. ....+.|.|.+++.+|+|.|+|.|.|..|.+.+++.|.
T Consensus 21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 98 (118)
T 1wwc_A 21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG--EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98 (118)
T ss_dssp CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECS--SEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccC--ccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEE
Confidence 5678899999999999999999999877654332221111 12456899999999999999999999999999999998
Q ss_pred cCc
Q psy10487 356 LPE 358 (610)
Q Consensus 356 V~~ 358 (610)
|..
T Consensus 99 v~~ 101 (118)
T 1wwc_A 99 FLK 101 (118)
T ss_dssp CSC
T ss_pred Ecc
Confidence 854
No 369
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.30 E-value=9.4e-12 Score=103.78 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=68.2
Q ss_pred CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc-ceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD-LLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+.+...+..+.+.+|++++|.|.+.| |.|.+.|+|++..+...... +....++ ....|.|.+++.+|+|.|+|
T Consensus 8 ~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C 81 (103)
T 1x44_A 8 IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG-----KKHILIIEGATKADAAEYSV 81 (103)
T ss_dssp CCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEET-----TEEEEEEEEECTTTCSEEEE
T ss_pred ceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcC-----CEEEEEECCCCcccCEEEEE
Confidence 34666778889999999999999988 77999999999988766521 1111111 12589999999999999999
Q ss_pred EeecCCcceeEEEEEEcCcc
Q psy10487 340 YAENIRGNASGEISLDLPEI 359 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~~~ 359 (610)
.|.| ....+.|.|.+.
T Consensus 82 ~a~n----~~~~~~l~V~~~ 97 (103)
T 1x44_A 82 MTTG----GQSSAKLSVDLK 97 (103)
T ss_dssp EETT----EEEEEEEEEECC
T ss_pred EECC----CcEEEEEEEeCC
Confidence 9998 466777777443
No 370
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.30 E-value=9.5e-12 Score=104.82 Aligned_cols=97 Identities=22% Similarity=0.397 Sum_probs=73.9
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecC--CCeEEEEeCCEEeccCCccc--eeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP--EPTILWLLNGQVLHNSSFDL--LEEEEGDALFEKSVSITLFNVTDLDAG 335 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g~~l~~~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G 335 (610)
+|.+...+....+.+|++++|.|.+.|.| .|.+.|++++..+....... .............+.|.|.+++.+|+|
T Consensus 10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 89 (112)
T 3so5_A 10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEG 89 (112)
T ss_dssp SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCE
T ss_pred CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCC
Confidence 68888888889999999999999999654 58999999999886543211 011111111233579999999999999
Q ss_pred EEEEEeecCCcc-eeEEEEEEc
Q psy10487 336 EYTCYAENIRGN-ASGEISLDL 356 (610)
Q Consensus 336 ~Y~C~a~N~~G~-~~~~~~L~V 356 (610)
.|+|.|.|..|. .+..+.|.|
T Consensus 90 ~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 90 XYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp EEEEEEEETTEEEECCCEEEEE
T ss_pred eEEEEEEeCCCcEEEeEEEEEe
Confidence 999999999998 457777776
No 371
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.29 E-value=6.5e-12 Score=117.04 Aligned_cols=119 Identities=23% Similarity=0.309 Sum_probs=88.3
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEeccCCc-c
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHNSSF-D 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~~~~~-~ 307 (610)
.+.+.|+|.+.+. +.....+... +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+..... .
T Consensus 66 ~d~G~Y~C~~~n~--~~~~~~~~l~-V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~ 142 (190)
T 2wv3_A 66 EDSGEYHCVYHFV--SAPKANATIE-VKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG 142 (190)
T ss_dssp GGCEEEEEEEEET--TEEEEEEEEE-EECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTS
T ss_pred ccCEEEEEEEEeC--CcccccEEEE-EecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCC
Confidence 4678899998766 3222222222 2357888888888889999999999999999999999999 7777643211 1
Q ss_pred ceeeccCCceeeeeeEEEEEecC-CCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487 308 LLEEEEGDALFEKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~L~V 356 (610)
....... ...+.|.|.+++ .+|+|.|+|.|.|..|....++.|.|
T Consensus 143 ~~~~~~~----~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V 188 (190)
T 2wv3_A 143 RFFIINK----ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188 (190)
T ss_dssp CEEEEEC----SSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEE
T ss_pred eEEEecC----CCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEE
Confidence 1111111 112489999999 79999999999999999999988887
No 372
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=5.7e-12 Score=138.04 Aligned_cols=148 Identities=18% Similarity=0.268 Sum_probs=120.0
Q ss_pred CccEEE-eecCCCCCCChhhh-----cccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCC
Q psy10487 56 DIQVLD-LNNNKISYLTKEAF-----KSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGND 129 (610)
Q Consensus 56 ~L~~L~-L~~n~i~~l~~~~~-----~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~ 129 (610)
+|+.|+ ++.|.+..+....+ ..+....|+.|+|++|.|+.++. |+.+++|++|+|++|+|..++ ..|.+++
T Consensus 410 ~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~ 486 (567)
T 1dce_A 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALP-PALAALR 486 (567)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCC-GGGGGCT
T ss_pred hcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccc-hhhhcCC
Confidence 577777 66665544433211 11123368999999999999864 999999999999999999886 4799999
Q ss_pred CCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccC-HHHhhcCccccccccccccccccCcc---cccCCCcccE
Q psy10487 130 RLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTALESLNLNGNRLKHLSES---VFFPTPNLKT 205 (610)
Q Consensus 130 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~ 205 (610)
+|+.|+|++|.++.++ .|..+++|+.|+|++|+|+.+. +..|..+++|+.|+|++|.++++++. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 9999999999999986 6899999999999999999997 88899999999999999999988653 2334778888
Q ss_pred Eec
Q psy10487 206 LSL 208 (610)
Q Consensus 206 l~l 208 (610)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 764
No 373
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.29 E-value=2.2e-12 Score=119.70 Aligned_cols=118 Identities=23% Similarity=0.386 Sum_probs=84.5
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeec--ceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKES--MVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~--~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~ 308 (610)
.+.+.|+|.+.+...+.............+|.+...+. ...+.+|+.++|.|.+.|.|.|.+.|+++|..+.......
T Consensus 67 ~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~ 146 (189)
T 2v5t_A 67 SDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI 146 (189)
T ss_dssp GGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEE
T ss_pred hHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEE
Confidence 36678999876655432211111111223455544332 4567789999999999999999999999999887654321
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 356 (610)
... ..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 147 ~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 186 (189)
T 2v5t_A 147 LKG--------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186 (189)
T ss_dssp EET--------TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred Eec--------CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEE
Confidence 111 1248999999999999999999999999998888877
No 374
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6.3e-12 Score=104.77 Aligned_cols=91 Identities=22% Similarity=0.313 Sum_probs=72.1
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|++++|.|.+.| |.|.+.|+|++..+....+..... ++ ....|.|.+++.+|+|.|+
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~-~~-----~~~~L~I~~v~~~D~G~Y~ 79 (103)
T 2edf_A 7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVC-EG-----TMAMLVIRGASLKDAGEYT 79 (103)
T ss_dssp CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEE-ET-----TEEEEEESSCCTTTCSEEE
T ss_pred CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEE-CC-----CEEEEEECCCCcccCEEEE
Confidence 4677888888899999999999999998 889999999998886654322221 11 1247999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccc
Q psy10487 339 CYAENIRGNASGEISLDLPEIN 360 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~ 360 (610)
|.|.| ...++.|.|.+.+
T Consensus 80 C~a~n----~~~~~~l~V~~~p 97 (103)
T 2edf_A 80 CEVEA----SKSTASLHVEEKA 97 (103)
T ss_dssp EECSS----CEEEEEEEECCCS
T ss_pred EEEcc----CCcEEEEEEeCCC
Confidence 99999 4677888885443
No 375
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.28 E-value=5.4e-12 Score=107.87 Aligned_cols=96 Identities=28% Similarity=0.436 Sum_probs=71.5
Q ss_pred cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc----ceeeccCCceeeeeeEEEEEecCCCC
Q psy10487 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD----LLEEEEGDALFEKSVSITLFNVTDLD 333 (610)
Q Consensus 258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D 333 (610)
..+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+...... .....++. .....+.+.+++.+|
T Consensus 7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~v~~~D 83 (117)
T 2v9t_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS---LFFLRIVHGRKSRPD 83 (117)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSC---EEESSCCCBTTBCSS
T ss_pred cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCc---EEEEEEEeCCCCcCc
Confidence 45788888888999999999999999999999999999999988654311 11111111 111123334668999
Q ss_pred CeEEEEEeecCCcceeE-EEEEEc
Q psy10487 334 AGEYTCYAENIRGNASG-EISLDL 356 (610)
Q Consensus 334 ~G~Y~C~a~N~~G~~~~-~~~L~V 356 (610)
+|.|+|.|.|..|.+.+ .+.|.+
T Consensus 84 ~G~Y~C~a~N~~G~~~s~~~~l~~ 107 (117)
T 2v9t_A 84 EGVYVCVARNYLGEAVSHDASLEV 107 (117)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEE
T ss_pred CEEEEEEEEeCccceEeeeEEEEh
Confidence 99999999999998754 667766
No 376
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.28 E-value=7.1e-13 Score=114.43 Aligned_cols=98 Identities=20% Similarity=0.311 Sum_probs=77.4
Q ss_pred cCCCceeeeecceEeecCceEEEEEEEEecCCCe-EEEEeCCEEeccCCccceee--ccCCceeeeeeEEEEEecCCCCC
Q psy10487 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEE--EEGDALFEKSVSITLFNVTDLDA 334 (610)
Q Consensus 258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~-v~W~~~g~~l~~~~~~~~~~--~~~~~~~~~~~~L~I~~v~~~D~ 334 (610)
..+|.+.. +....+.+|+.+.|.|.+.|.|.|. |.|++++..+.......... ...+. ...+.|.|.+++.+|.
T Consensus 12 ~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~ 88 (122)
T 2cry_A 12 NGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE--GVISTLTISNIVRADF 88 (122)
T ss_dssp CSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETT--EEEEEEECTTCCHHHH
T ss_pred ecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCC--ceEEEEEEcCCChhhC
Confidence 46788887 8888999999999999999999997 99999998887531111111 11000 1245899999999999
Q ss_pred -eEEEEEeecCCcceeEEEEEEcCc
Q psy10487 335 -GEYTCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 335 -G~Y~C~a~N~~G~~~~~~~L~V~~ 358 (610)
|.|+|.|.|..|.+...+.|.|.+
T Consensus 89 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 113 (122)
T 2cry_A 89 QTIYNCTAWNSFGSDTEIIRLKEQG 113 (122)
T ss_dssp HSCEEEEEECSSCEEEEEECCCCSC
T ss_pred CceEEEEEECCCCeEEEEEEEEECC
Confidence 999999999999999999998854
No 377
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=5.8e-12 Score=105.18 Aligned_cols=87 Identities=16% Similarity=0.315 Sum_probs=67.4
Q ss_pred CCceeeeecc---eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487 260 PPNVTIKESM---VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336 (610)
Q Consensus 260 ~P~i~~~~~~---~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 336 (610)
+|.+...+.. +.+.+|++++|.|.+.|.|.| +.|+|++..+....+....... ....|.|.+++.+|+|.
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~ 79 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDG------RKHRLILPEAKVQDSGE 79 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEET------TEEEEEESSCCTTTCEE
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCC------CEEEEEECCCChhhCEE
Confidence 5666666666 788999999999999999999 9999999988765433222111 12479999999999999
Q ss_pred EEEEeecCCcceeEEEEEEcC
Q psy10487 337 YTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 337 Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
|+|.|.|..+ .+.|.|.
T Consensus 80 Y~C~a~n~~~----~~~l~V~ 96 (104)
T 2e6p_A 80 FECRTEGVSA----FFGVTVQ 96 (104)
T ss_dssp EEEECSSCCC----CEEEEEE
T ss_pred EEEEECCceE----EEEEEEc
Confidence 9999999854 4555553
No 378
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.28 E-value=4.5e-12 Score=120.45 Aligned_cols=122 Identities=23% Similarity=0.345 Sum_probs=89.5
Q ss_pred CCCCCCCCCCCCccCCCccccccccccc------CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA------CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS 304 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~------c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~ 304 (610)
.+.+.|+|.+.+..+......+...... ..|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+...
T Consensus 75 ~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~ 154 (212)
T 2yd1_A 75 RDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS 154 (212)
T ss_dssp TTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTT
T ss_pred CcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccC
Confidence 4678899998776554222222222211 1267777777888999999999999999999999999999988754
Q ss_pred CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE-EEEEcCcccc
Q psy10487 305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE-ISLDLPEINL 361 (610)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~-~~L~V~~~~~ 361 (610)
.... . ...+.|.|.+++.+|+|.|+|.|.|..|..... +.|.|.+...
T Consensus 155 ~~~~-~--------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~ 203 (212)
T 2yd1_A 155 NPRY-S--------LKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV 203 (212)
T ss_dssp STTE-E--------EETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred CCeE-E--------ccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence 3221 1 223489999999999999999999999998764 8888865433
No 379
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=7.6e-12 Score=137.02 Aligned_cols=171 Identities=19% Similarity=0.251 Sum_probs=128.5
Q ss_pred cCCCCCCccCcccC--CCccEEEeecCC-------------CCCCChhhhcccCCCCccEEE-cccCCCcccchhh----
Q psy10487 41 CKDANFTALPSTLD--SDIQVLDLNNNK-------------ISYLTKEAFKSIGLLNLQRIY-LKNSGIREVHRDT---- 100 (610)
Q Consensus 41 C~~~~l~~lP~~l~--~~L~~L~L~~n~-------------i~~l~~~~~~~~~l~~L~~L~-L~~n~l~~i~~~~---- 100 (610)
+++++|+.+|..+. .+|+.|++++|. +....+..+. ++.+|+.|+ ++.|.+..+....
T Consensus 356 Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~--~l~~L~~L~~l~~n~~~~L~~l~l~~n 433 (567)
T 1dce_A 356 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ--YFSTLKAVDPMRAAYLDDLRSKFLLEN 433 (567)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH--HHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred CChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH--HHHhcccCcchhhcccchhhhhhhhcc
Confidence 34455566665553 356666665543 3333444444 466777777 5555433322111
Q ss_pred -hcC--CCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCc
Q psy10487 101 -FKY--LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177 (610)
Q Consensus 101 -f~~--l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (610)
+.. ...|+.|+|++|+|+.++. |..+++|+.|+|++|.++.++. .|..+++|+.|+|++|+|+.++ .|..++
T Consensus 434 ~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~ 508 (567)
T 1dce_A 434 SVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLP 508 (567)
T ss_dssp HHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCS
T ss_pred cccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCCC
Confidence 111 1258999999999999864 9999999999999999997754 7899999999999999999984 789999
Q ss_pred cccccccccccccccC-cccccCCCcccEEecCCCcccccCC
Q psy10487 178 ALESLNLNGNRLKHLS-ESVFFPTPNLKTLSLDGNPWCCDCH 218 (610)
Q Consensus 178 ~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~N~~~c~c~ 218 (610)
+|+.|+|++|+|+++. +..+..+++|+.|++++|++.....
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999999999999996 7788899999999999999876644
No 380
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.27 E-value=9.4e-12 Score=124.11 Aligned_cols=127 Identities=13% Similarity=0.179 Sum_probs=90.8
Q ss_pred CCCCCCCCCCCCccCCCccccccccccc-CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA-CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~-c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+.........+...... -+|.+...+....+.+|+.++|.|.+.|+|.|.+.|++++...........
T Consensus 151 ~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~ 230 (289)
T 3mjg_X 151 FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230 (289)
T ss_dssp CCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEE
T ss_pred ccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccc
Confidence 4678999998655443332222222211 467788887778899999999999999999999999987765433221111
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 358 (610)
..... ......+.|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 231 ~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~ 278 (289)
T 3mjg_X 231 DFLLD-MPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278 (289)
T ss_dssp EESCT-TTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred cccCC-cceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence 11000 0113457999999999999999999999999999999999843
No 381
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.9e-12 Score=104.22 Aligned_cols=83 Identities=18% Similarity=0.353 Sum_probs=68.6
Q ss_pred eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR 345 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 345 (610)
.+..+.+.+|+.++|.|.+.|.| |.+.|+|++..+....+.. . ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~--~--------~~~~L~i~~v~~~D~G~Y~C~a~n~~ 77 (99)
T 2cr3_A 9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTR--I--------TGEEVEVQDSVPADSGLYACVTSSPS 77 (99)
T ss_dssp CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEE--E--------CSSEEEETTCCTTTCEEEEEEEEETT
T ss_pred CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEE--E--------ECCEEEEccCCHHHCEEEEEEEEeCC
Confidence 45667788999999999999987 8999999998775543211 1 12489999999999999999999999
Q ss_pred cceeEEEEEEcCcc
Q psy10487 346 GNASGEISLDLPEI 359 (610)
Q Consensus 346 G~~~~~~~L~V~~~ 359 (610)
|.....+.|.|.+.
T Consensus 78 g~~~~~~~l~V~~~ 91 (99)
T 2cr3_A 78 GSDTTYFSVNVSDA 91 (99)
T ss_dssp EEEEEEEEECBCSC
T ss_pred ceEEEEEEEEEecC
Confidence 99999999988543
No 382
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.27 E-value=1.7e-12 Score=128.32 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=64.5
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecC------CCeEEEEeC--CEE---eccCCccceeeccCCceee---eeeEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP------EPTILWLLN--GQV---LHNSSFDLLEEEEGDALFE---KSVSIT 325 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P------~p~v~W~~~--g~~---l~~~~~~~~~~~~~~~~~~---~~~~L~ 325 (610)
.+.+...+..+.+.+|++++|.|.+.+.| .+.+.|++. +.. +............++.... ....|+
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~ 84 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT 84 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence 46677778889999999999999999988 789999984 221 1100000000000111111 135899
Q ss_pred EEecCCCCCeEEEEEeecCCcc-eeEEEEEEcC
Q psy10487 326 LFNVTDLDAGEYTCYAENIRGN-ASGEISLDLP 357 (610)
Q Consensus 326 I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~ 357 (610)
|.+++.+|+|.|.|.|.|..+. ....+.|.|.
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~ 117 (264)
T 2gjj_A 85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIK 117 (264)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEE
T ss_pred ECCCCHHHCEEEEEEEecCCccEecCCEEEEEE
Confidence 9999999999999999998653 2234566664
No 383
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.27 E-value=1e-12 Score=124.64 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=57.2
Q ss_pred CceeeeecceEe--ecCceEEEEEEEEecCC----CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487 261 PNVTIKESMVIR--EAGGNVTMSCYVYGDPE----PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334 (610)
Q Consensus 261 P~i~~~~~~~~v--~~G~~v~l~C~~~g~P~----p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 334 (610)
|.+...+....+ .+|++++|.|.+.|.|+ +.|.|+|++..+.......... ..++.+...+.|.|......|+
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~-~~~g~~~~~~~l~i~~~d~~d~ 80 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE-QYNSTYRVVSVLTVLHQDWLNG 80 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEE-CTTSCEEEEEEEECCHHHHHTT
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCcee-ccCCcEEEEEEEEEEHHHccCC
Confidence 455555444433 68999999999999863 4999999998775432111111 1111222233444444444559
Q ss_pred eEEEEEeecCCcceeEEEEE
Q psy10487 335 GEYTCYAENIRGNASGEISL 354 (610)
Q Consensus 335 G~Y~C~a~N~~G~~~~~~~L 354 (610)
|.|+|.|.|..|....+..+
T Consensus 81 g~Y~C~a~n~~~~~~~~~~v 100 (207)
T 1l6x_A 81 KEYKCKVSNKALPAPIEKTI 100 (207)
T ss_dssp CCEEEEEECTTSSSCEEEEE
T ss_pred ceEEEEEEcCcCCcceEEEe
Confidence 99999999998875333333
No 384
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.26 E-value=2.9e-12 Score=121.29 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC--ccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS--FDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~--~~~ 308 (610)
.+.+.|+|.+.+..+... ..+... +..||.+...+....+.+|+.++|.|.+.|.|.|.|.|++++..+.... ..+
T Consensus 79 ~D~G~Y~C~a~n~~g~~~-~~~~l~-V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r 156 (203)
T 4fa8_A 79 SHDGNYLCRMKLGETEVT-KQEHLS-VVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG 156 (203)
T ss_dssp GGCEEEEEEEEETTEEEE-EEEEEE-EEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------C
T ss_pred HHCeEEEEEEEcCCCcEE-EEEEEE-ecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccce
Confidence 478899999877554322 222222 2346777777888889999999999999999999999999776543221 111
Q ss_pred e-eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE
Q psy10487 309 L-EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE 351 (610)
Q Consensus 309 ~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 351 (610)
. ...++. ...+.|.+++.+|+|.|+|+|.|.+|.+...
T Consensus 157 ~~~~~~g~-----l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 157 VMKEKDGS-----LSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp CEECTTSC-----EEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred EEEeCCCC-----EEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 1 111221 1245667999999999999999999998764
No 385
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.26 E-value=1.1e-11 Score=102.14 Aligned_cols=87 Identities=25% Similarity=0.362 Sum_probs=68.2
Q ss_pred CCceeee-ecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 260 PPNVTIK-ESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 260 ~P~i~~~-~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
+|.+... +..+.+.+|++++|.|.+. |.|.|.+.|++++....... .....+.|.|.+++.+|+|.|
T Consensus 9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~-----------~~~~~~~L~i~~v~~~D~G~Y 77 (98)
T 1gl4_B 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-----------AMDFNGILTIRNVQPSDAGTY 77 (98)
T ss_dssp CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-----------EEEETTEEEECSCCGGGCEEE
T ss_pred CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce-----------eecCCCEEEEeCCChhhCEEE
Confidence 3444443 4667889999999999998 68999999999754332211 112335899999999999999
Q ss_pred EEEeecCCcceeEEEEEEcC
Q psy10487 338 TCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~ 357 (610)
+|.|.|..|.....+.|.|.
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~ 97 (98)
T 1gl4_B 78 VCTGSNMFAMDQGTATLHVQ 97 (98)
T ss_dssp EEEEECSSCEEEEEEEEEEC
T ss_pred EEEecCCCCccccEEEEEEe
Confidence 99999999999999988873
No 386
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.26 E-value=8.1e-12 Score=118.26 Aligned_cols=88 Identities=25% Similarity=0.488 Sum_probs=72.5
Q ss_pred eeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC
Q psy10487 265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI 344 (610)
Q Consensus 265 ~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 344 (610)
..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+.......+ ..+.|.|.+++.+|+|.|+|.|.|.
T Consensus 122 ~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~N~ 196 (212)
T 2r15_A 122 GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAG-----RTAYFTINGVSTADSGKYGLVVKNK 196 (212)
T ss_dssp BCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETT-----TEEEEEESSCCGGGCEEEEEEEEET
T ss_pred cCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCC-----CEEEEEEcCcchHHCeEEEEEEEcC
Confidence 34566788999999999999999999999999999987665433222211 1258999999999999999999999
Q ss_pred CcceeEEEEEEcC
Q psy10487 345 RGNASGEISLDLP 357 (610)
Q Consensus 345 ~G~~~~~~~L~V~ 357 (610)
.|....++.|.|.
T Consensus 197 ~g~~~~~~~l~V~ 209 (212)
T 2r15_A 197 YGSETSDFTVSVF 209 (212)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEE
Confidence 9999999888873
No 387
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.25 E-value=3e-11 Score=116.11 Aligned_cols=172 Identities=12% Similarity=0.051 Sum_probs=92.7
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEec---c-CC--ccceee--ccCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVLH---N-SS--FDLLEE--EEGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l~---~-~~--~~~~~~--~~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.| .+.+.|+|.. ..+. . .. ...... ..++.... ....|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (225)
T 1op3_H 6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK 85 (225)
T ss_dssp EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence 45567899999999999999887 7899999842 2111 0 00 000000 00111111 135899999
Q ss_pred cCCCCCeEEEEEeecCCc-----c---eeEEEEEEcCcc-cccccccc-CCcceeehhhhHHHHHHHHHhheeEEEEEEe
Q psy10487 329 VTDLDAGEYTCYAENIRG-----N---ASGEISLDLPEI-NLATTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFCVCRA 398 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G-----~---~~~~~~L~V~~~-~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (610)
++.+|+|.|.|.+.|..| . ....+.|.|... ..+|.+.. .+......+ . .+...|..
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g-~------------~v~L~C~~ 152 (225)
T 1op3_H 86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSG-G------------TAALGCLV 152 (225)
T ss_dssp CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCC-C------------EEEEEEEE
T ss_pred CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCC-C------------cEEEEEEE
Confidence 999999999999999875 2 123456776431 12233221 111111111 1 11334444
Q ss_pred eec-c---cccccccCCccc--ccc-cccc------ccceeeeeeeeccCcceeeeecCCCcceee
Q psy10487 399 HEH-K---NKRRKRKGKMKQ--SVS-FNDQ------EKKLLDVSITTTDRHTGSCEALGSQPDMEL 451 (610)
Q Consensus 399 ~~~-~---~~~~~~~~~~~~--~~~-~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 451 (610)
.+. + ...|.+.+.... ... .... ...|.|..+..+| |.|+|.|.|..+....
T Consensus 153 ~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~ 217 (225)
T 1op3_H 153 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV 217 (225)
T ss_dssp EEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEE
T ss_pred EeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccE
Confidence 332 2 233433322100 000 0011 1246777777678 9999999997775443
No 388
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.25 E-value=7e-11 Score=112.47 Aligned_cols=179 Identities=12% Similarity=0.096 Sum_probs=94.4
Q ss_pred eeecceEeecCceEEEEEEEEec--CCCeEEEEeCC--EEec----cCCccc-ee--eccCCcee---eeeeEEEEEecC
Q psy10487 265 IKESMVIREAGGNVTMSCYVYGD--PEPTILWLLNG--QVLH----NSSFDL-LE--EEEGDALF---EKSVSITLFNVT 330 (610)
Q Consensus 265 ~~~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g--~~l~----~~~~~~-~~--~~~~~~~~---~~~~~L~I~~v~ 330 (610)
..+..+.+.+|++++|.|.+.|. +.+.+.|+|.. .... ...... .. ...++... .....|.|.+++
T Consensus 4 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (215)
T 3nl4_H 4 EESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPT 83 (215)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCC
T ss_pred EcCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCC
Confidence 35667889999999999999874 46789999732 1110 000000 00 00011111 122469999999
Q ss_pred CCCCeEEEEEeecCCcc----eeEEEEEEcCc-cccccccc-cCCcceeehhhhHHHHHHHHHhheeEEEEEEeeecc--
Q psy10487 331 DLDAGEYTCYAENIRGN----ASGEISLDLPE-INLATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHK-- 402 (610)
Q Consensus 331 ~~D~G~Y~C~a~N~~G~----~~~~~~L~V~~-~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (610)
.+|+|.|.|.+.|..+. ....+.|.|.. ...+|.+. ..+......+ .. +...|...+.+
T Consensus 84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g-~~------------v~l~C~~~~~~p~ 150 (215)
T 3nl4_H 84 TEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPS-ST------------VTLGCLVKGYLPE 150 (215)
T ss_dssp GGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC---C------------EEEEEEEEEEBSS
T ss_pred cccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCC-Cc------------EEEEEEEeeeeCC
Confidence 99999999999998663 33445666642 22333333 1111111111 11 13344433322
Q ss_pred c--ccccccCCcccc---ccccccccceee---eeeeeccCcceeeeecCCCcceeeeeeccc
Q psy10487 403 N--KRRKRKGKMKQS---VSFNDQEKKLLD---VSITTTDRHTGSCEALGSQPDMELIEQSLA 457 (610)
Q Consensus 403 ~--~~~~~~~~~~~~---~~~~~~~~~L~i---~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 457 (610)
. ..|.+.+..... ......++.+.+ ..+...| |.|+|.|.|..|.......+.+
T Consensus 151 ~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~~~~~~l~~ 212 (215)
T 3nl4_H 151 PVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPATNTKVDKTVAP 212 (215)
T ss_dssp CCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEECC----CCEEEEEEGGGTEEEEEECCS
T ss_pred CeEEEEeeCCEECCeEecCceECCCCCEEEEEEEEEeccC-CEEEEEEEeCCCCcceEEecCC
Confidence 1 123332211000 011223455555 5677778 9999999999998776665543
No 389
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.25 E-value=1.6e-11 Score=105.64 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=65.8
Q ss_pred cceEeecCceEEEEEEEEec--CCCeEEEEeCCEEeccC---CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee
Q psy10487 268 SMVIREAGGNVTMSCYVYGD--PEPTILWLLNGQVLHNS---SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE 342 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g~~l~~~---~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 342 (610)
..+.+.+|++++|.|.+.|. |.+.+.|++++..+... ........ +.......+.|.|.+++.+|+|.|+|.|.
T Consensus 16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 94 (122)
T 3s35_X 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS-GSEMKKFLSTLTIDGVTRSDQGLYTCAAS 94 (122)
T ss_dssp SCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEE-ETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeecccccc-CCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence 34588999999999999994 45789999988744311 00000000 01111345689999999999999999999
Q ss_pred cCCcceeEEEEEEcCc
Q psy10487 343 NIRGNASGEISLDLPE 358 (610)
Q Consensus 343 N~~G~~~~~~~L~V~~ 358 (610)
|..|...+.+.|.|.+
T Consensus 95 n~~g~~~~~~~l~V~~ 110 (122)
T 3s35_X 95 SGLMTKKNSTFVRVHE 110 (122)
T ss_dssp CSSCEEEEEEEEEEEE
T ss_pred cCCCceEEEEEEEEec
Confidence 9999999999999843
No 390
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.25 E-value=4.3e-11 Score=99.12 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=70.6
Q ss_pred CCCceeeeecc-eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 259 CPPNVTIKESM-VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 259 c~P~i~~~~~~-~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
.+|.+...+.. ..+.+|++++|.|.+. .|.|.+.|+|++..+....+..... .+ ....|.|.+++.+|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~-~~-----~~~~L~I~~~~~~D~G~Y 78 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEH-KG-----CQRILFINNCQMTDDSEY 78 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEE-ET-----TEEEEEEEEECTTTCCEE
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEe-cC-----CEEEEEEcCCCcCcCEEE
Confidence 46788777766 6788999999999998 7999999999998887654322221 11 123799999999999999
Q ss_pred EEEeecCCcceeEEEEEEcCc
Q psy10487 338 TCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~ 358 (610)
+|.| |....++.|.|.+
T Consensus 79 ~C~a----g~~~~~~~l~V~~ 95 (100)
T 2yuv_A 79 YVTA----GDEKCSTELFVRS 95 (100)
T ss_dssp EEEE----TTEEEEEEEEECC
T ss_pred EEEE----CCceEEEEEEEec
Confidence 9999 7788888898854
No 391
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.25 E-value=1.4e-11 Score=101.01 Aligned_cols=82 Identities=15% Similarity=0.281 Sum_probs=67.9
Q ss_pred eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCC
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIR 345 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 345 (610)
.+....+.+|++++|.|.+.| .|.+.|+++|..+....+.. ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~----------~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 74 (95)
T 4hwu_A 7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTV----------LIGEYLQIKGATPRDSGLYACTAARTV 74 (95)
T ss_dssp -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEE----------EETTEEEECSCCGGGCEEEEEEEECSS
T ss_pred CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEE----------EeCCEEEECcCCcccCEEEEEEEccCC
Confidence 456778899999999999987 58999999999886554311 123489999999999999999999999
Q ss_pred cceeEEEEEEcCcc
Q psy10487 346 GNASGEISLDLPEI 359 (610)
Q Consensus 346 G~~~~~~~L~V~~~ 359 (610)
|.....+.|.|.+.
T Consensus 75 g~~~~~~~l~V~~~ 88 (95)
T 4hwu_A 75 DSETWIFMVNVTDA 88 (95)
T ss_dssp CEEEEEEEEEECCC
T ss_pred CcEEEEEEEEEeCC
Confidence 99999999998543
No 392
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.24 E-value=1e-11 Score=119.98 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=66.0
Q ss_pred CCcee-eeecceEeecCceEEEEEEEEec-CC-C-eEEEEeCCEEe-ccCCccceeeccCCceeeeeeEEEEEecCCCCC
Q psy10487 260 PPNVT-IKESMVIREAGGNVTMSCYVYGD-PE-P-TILWLLNGQVL-HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334 (610)
Q Consensus 260 ~P~i~-~~~~~~~v~~G~~v~l~C~~~g~-P~-p-~v~W~~~g~~l-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 334 (610)
+|.+. ..+....+.+|+.++|.|.+.|. |. | .|+|+++|..+ ..... ......++.+...+.|+|.+++.+|+
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~--~~~~~~~g~~~~~s~L~I~~~~~~D~ 89 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPM--VLQEHFNGTYSASSAVPVSTQDWLSG 89 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCC--EEEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccc--cceECCCCcEEEEEEEEecchhccCC
Confidence 45554 34566677899999999999985 64 5 99999999876 32211 11112223334567899999999999
Q ss_pred eEEEEEeecCCcceeEEEEE
Q psy10487 335 GEYTCYAENIRGNASGEISL 354 (610)
Q Consensus 335 G~Y~C~a~N~~G~~~~~~~L 354 (610)
|.|+|.|.|..+.......+
T Consensus 90 g~Y~C~~~~~~~~~~~~~~v 109 (231)
T 2w59_A 90 ERFTCTVQHEELPLPLSKSV 109 (231)
T ss_dssp CCEEEEEECTTCSSCEEEEE
T ss_pred CEEEEEEEcCCCCCceEEEE
Confidence 99999999988764444444
No 393
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=7.6e-12 Score=104.95 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=70.4
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|+.++|.|.+.|.|.| +.|+|++..+....+........ ...|.|.+++.+|+|.|+
T Consensus 7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~ 79 (106)
T 2dlt_A 7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGR------FHKLVIDDVRPEDEGDYT 79 (106)
T ss_dssp CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETT------EEEEEESSCCTTTCSCEE
T ss_pred CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCC------EEEEEECCCCcCCCEEEE
Confidence 56888888899999999999999999999988 99999999887655432221111 248999999999999999
Q ss_pred EEeecCCcceeEEEEEEc
Q psy10487 339 CYAENIRGNASGEISLDL 356 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V 356 (610)
|.|.|. ..+..+.|.|
T Consensus 80 C~a~n~--~~~~~~~l~V 95 (106)
T 2dlt_A 80 FVPDGY--ALSLSAKLNF 95 (106)
T ss_dssp EEEETS--CCCCCBCEEE
T ss_pred EEEccC--CceEEEEEEE
Confidence 999998 4444555555
No 394
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.24 E-value=4.6e-12 Score=127.06 Aligned_cols=181 Identities=14% Similarity=0.136 Sum_probs=95.2
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEe---cc-C--Cccceee--ccCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVL---HN-S--SFDLLEE--EEGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l---~~-~--~~~~~~~--~~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.| .+.+.|++.. ..+ .. . ....... ..++.... ....|+|.+
T Consensus 28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 107 (291)
T 2gki_A 28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS 107 (291)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence 45578899999999999999887 6899999942 111 00 0 0000000 00111111 135899999
Q ss_pred cCCCCCeEEEEEeecCC-cc----eeEEEEEEcCcc-------------ccccccccCCcceeehhhhHHHHHHHHHhhe
Q psy10487 329 VTDLDAGEYTCYAENIR-GN----ASGEISLDLPEI-------------NLATTLSKTDSWYMLVLGISVCVVSVIVSIG 390 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~-G~----~~~~~~L~V~~~-------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (610)
++.+|+|.|.|.+.|.. |. ....+.|.|... ...+.+...+....+..+..+.+.|.+.+..
T Consensus 108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 187 (291)
T 2gki_A 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL 187 (291)
T ss_dssp CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence 99999999999999975 21 112346776541 0122233334333333333333333322222
Q ss_pred eE------EEEEEeee-ccccccccc------CCccccccc--cccccceeeeeeeeccCcceeeeecCCC
Q psy10487 391 MS------FCVCRAHE-HKNKRRKRK------GKMKQSVSF--NDQEKKLLDVSITTTDRHTGSCEALGSQ 446 (610)
Q Consensus 391 ~~------~~~~~~~~-~~~~~~~~~------~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~A~N~~ 446 (610)
.. .+.|.+.. ......... ......... ......|.|.+++.+|+|.|+|.|.|..
T Consensus 188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 21 22222221 010000000 000111111 1223479999999999999999999953
No 395
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.24 E-value=2.6e-11 Score=116.78 Aligned_cols=176 Identities=11% Similarity=0.089 Sum_probs=94.0
Q ss_pred eecceEeecCceEEEEEEEEecCC----CeEEEEeC--CEEe---c-cCC-ccceeec--cCCceee-----eeeEEEEE
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDPE----PTILWLLN--GQVL---H-NSS-FDLLEEE--EGDALFE-----KSVSITLF 327 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P~----p~v~W~~~--g~~l---~-~~~-~~~~~~~--~~~~~~~-----~~~~L~I~ 327 (610)
.+..+.+.+|++++|.|.+.|.|. +.+.|+|. +..+ . ... ....... .++..+. ....|.|.
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 85 (228)
T 3bae_H 6 ESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT 85 (228)
T ss_dssp EECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred CCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence 356778999999999999999875 89999984 2211 1 000 0000000 0111111 13689999
Q ss_pred ecCCCCCeEEEEEeecCCc------c---eeEEEEEEcCcc-ccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEE
Q psy10487 328 NVTDLDAGEYTCYAENIRG------N---ASGEISLDLPEI-NLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCR 397 (610)
Q Consensus 328 ~v~~~D~G~Y~C~a~N~~G------~---~~~~~~L~V~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (610)
+++.+|+|.|.|.+.|..| . ....+.|.|... ..+|.+........+. .+ ..+...|.
T Consensus 86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~-----------~g-~~~~l~C~ 153 (228)
T 3bae_H 86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDT-----------TG-SSVTLGCL 153 (228)
T ss_dssp SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC----------------CC-SEEEEEEE
T ss_pred CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEeccccccc-----------CC-CCEEEEEE
Confidence 9999999999999999875 1 123467777531 1223222111000000 01 11233444
Q ss_pred eeec-c---cccccccCCcccccc---c-c----ccccceeeeeeeeccCcceeeeecCCCcceeeeee
Q psy10487 398 AHEH-K---NKRRKRKGKMKQSVS---F-N----DQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQ 454 (610)
Q Consensus 398 ~~~~-~---~~~~~~~~~~~~~~~---~-~----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 454 (610)
..+. + ...|.+......... . . .....|.|..+..+| |.|+|.|.|..|.......
T Consensus 154 ~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~ 221 (228)
T 3bae_H 154 VKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK 221 (228)
T ss_dssp EEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred EccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence 4332 2 233433322100000 0 0 112346776666645 9999999999987655443
No 396
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Probab=99.23 E-value=1.4e-11 Score=108.59 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=69.2
Q ss_pred cccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc--------cceeeccCCceeeeeeEEEEE
Q psy10487 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF--------DLLEEEEGDALFEKSVSITLF 327 (610)
Q Consensus 256 ~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~--------~~~~~~~~~~~~~~~~~L~I~ 327 (610)
...++|.+...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+..... ...... ........+.|.|.
T Consensus 17 ~~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~ 95 (137)
T 3qr2_A 17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIH-ATYHQHAASTISID 95 (137)
T ss_dssp ----CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEE-EEESSSEEEEEEEC
T ss_pred CCCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEe-cccccccceEEEEC
Confidence 345789999999999999999999999999999999999998765532210 000000 00001234699999
Q ss_pred ecCCCCCeEEEEEeecCCcceeE
Q psy10487 328 NVTDLDAGEYTCYAENIRGNASG 350 (610)
Q Consensus 328 ~v~~~D~G~Y~C~a~N~~G~~~~ 350 (610)
+++.+|+|.|+|.|.|..|....
T Consensus 96 ~v~~~D~G~Y~C~a~N~~G~~~~ 118 (137)
T 3qr2_A 96 TLVEEDTGTYECRASNDPDRNHL 118 (137)
T ss_dssp SCCGGGCEEEEEEEECCTTSSSC
T ss_pred CCCcccCEEEEEEEEecCCccce
Confidence 99999999999999999998643
No 397
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.23 E-value=8.5e-12 Score=116.85 Aligned_cols=117 Identities=24% Similarity=0.361 Sum_probs=86.5
Q ss_pred CCCCCCCCCCCCccCCCccc--cccccc------ccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEec
Q psy10487 231 LYSHPLSCTEPGMLQTKHWD--DVKAQE------FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLH 302 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~--~v~~~~------~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~ 302 (610)
.+.+.|+|.+.+........ .+.... ...+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.
T Consensus 76 ~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~ 155 (201)
T 3s97_C 76 SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP 155 (201)
T ss_dssp GGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCC
T ss_pred ccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCC
Confidence 36678999887654433221 111111 1134666666668889999999999999999999999999998765
Q ss_pred cCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487 303 NSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
.... ... ..+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 156 ~~~~--~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 156 STAE--IST--------SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp TTCE--EET--------TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred Ccee--ecC--------CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 4321 111 12489999999999999999999999999999998873
No 398
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.23 E-value=1.6e-12 Score=126.50 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=62.7
Q ss_pred CCceeeeecceE--eecCceEEEEEEEEec---CCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCC
Q psy10487 260 PPNVTIKESMVI--REAGGNVTMSCYVYGD---PEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333 (610)
Q Consensus 260 ~P~i~~~~~~~~--v~~G~~v~l~C~~~g~---P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 333 (610)
+|.+...+.... +.+|++++|.|.+.|. |.| .|.|++++..+.......... ..++.+...+.|.|.+++.+|
T Consensus 15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~~~~s~L~I~~~~~~D 93 (239)
T 1i1c_A 15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEK-QSNSTLRSVSELPIVERDWLN 93 (239)
T ss_dssp --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEE-CTTSCEEEEEEEECCHHHHHT
T ss_pred CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceE-cCCCcEEEEEEEEEEhhHccC
Confidence 455555544444 7799999999999987 877 899999887664321111111 111233455789999999999
Q ss_pred CeEEEEEeecCCcceeE
Q psy10487 334 AGEYTCYAENIRGNASG 350 (610)
Q Consensus 334 ~G~Y~C~a~N~~G~~~~ 350 (610)
+|.|+|.|.|..|....
T Consensus 94 ~g~Y~C~~~~~~~~~~~ 110 (239)
T 1i1c_A 94 GKTFKCKVNSGAFPAPI 110 (239)
T ss_dssp TCCEEEEEECSSSSSCE
T ss_pred CCeEEEEEecccCCCCc
Confidence 99999999999886533
No 399
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.23 E-value=2.1e-11 Score=118.57 Aligned_cols=95 Identities=16% Similarity=0.276 Sum_probs=61.0
Q ss_pred eeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEec----cCCcccee-eccCCceee----eeeEEEEEecCC
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLH----NSSFDLLE-EEEGDALFE----KSVSITLFNVTD 331 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~----~~~~~~~~-~~~~~~~~~----~~~~L~I~~v~~ 331 (610)
+...+..+.+.+|++++|.|.+.+.|.+.+.|+|. +.... ........ ...++.... ....|.|.+++.
T Consensus 4 v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~ 83 (245)
T 3nfj_J 4 IHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLL 83 (245)
T ss_dssp EEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCCG
T ss_pred eeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCCh
Confidence 45567788999999999999999999999999982 21110 00000000 000111111 134899999999
Q ss_pred CCCeEEEEEeecCCc------ceeEEEEEEcC
Q psy10487 332 LDAGEYTCYAENIRG------NASGEISLDLP 357 (610)
Q Consensus 332 ~D~G~Y~C~a~N~~G------~~~~~~~L~V~ 357 (610)
+|+|.|+|.|.|..| .....+.|.|.
T Consensus 84 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~ 115 (245)
T 3nfj_J 84 SDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVV 115 (245)
T ss_dssp GGCEEEEEEEECCTTTSSCCCEECCCEEEEEE
T ss_pred hhCEEEEEEEeeccCCCceeEEECCCeEEEEE
Confidence 999999999999433 22334566664
No 400
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.23 E-value=1.5e-11 Score=113.74 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=86.1
Q ss_pred cCCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecC-CCeEEEEe---CCEEecc-C
Q psy10487 230 KLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLL---NGQVLHN-S 304 (610)
Q Consensus 230 ~l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-~p~v~W~~---~g~~l~~-~ 304 (610)
..+.+.|+|.+.+... ..+. ..+..+|.+...+....+.+|+.++|.|.+.|.| .|.+.|++ ++..+.. .
T Consensus 58 ~~d~G~Y~C~~~n~~~----~~~~-l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~ 132 (184)
T 3b5h_A 58 DDQWGEYSCVFLPEPM----GTAN-IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG 132 (184)
T ss_dssp GGCCEEEEEEEESTTS----CEEE-EEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTT
T ss_pred hhhCeEEEEEEECCcC----cEEE-EEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecC
Confidence 4477889999876222 1111 1224678888877778899999999999999999 89999999 5544332 2
Q ss_pred CccceeeccCCceeeeeeEEEEEecC-CCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487 305 SFDLLEEEEGDALFEKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
...+...... ...+.|.|.+++ .+|+|.|+|.|.|..|.....+.|.|.
T Consensus 133 ~~~~~~~~~~----~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 133 SESRFFVSSS----QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp GGGTEEEEEE----TTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCEEEEEec----CCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence 1111111110 112489999999 999999999999999999999999884
No 401
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.23 E-value=1e-10 Score=111.96 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=93.2
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EE---ecc-CC--ccceeec--cCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QV---LHN-SS--FDLLEEE--EGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~---l~~-~~--~~~~~~~--~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.| .+.+.|+|.. .. +.. .. ....... .++.... ....|+|.+
T Consensus 6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (220)
T 2fbj_H 6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence 45568899999999999999876 6889999842 21 110 00 0000000 0111111 235899999
Q ss_pred cCCCCCeEEEEEeecCCcc---eeEEEEEEcCccc-cccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeeec-c-
Q psy10487 329 VTDLDAGEYTCYAENIRGN---ASGEISLDLPEIN-LATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-K- 402 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G~---~~~~~~L~V~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 402 (610)
++.+|+|.|.|.+.|..+. ....+.|.|.... .+|.+...+......+ .. +...|...+. +
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g-~~------------v~L~C~~~g~~P~ 152 (220)
T 2fbj_H 86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSS-DP------------VIIGCLIHDYFPS 152 (220)
T ss_dssp CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCC-SS------------EEEEEEEEEEBSC
T ss_pred CChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCC-Cc------------EEEEEEEEeEECC
Confidence 9999999999999998653 2234577775321 2333322211111111 11 1223333322 2
Q ss_pred ---cccccccCCccccccc---cccc------cceeeeeeeeccCcceeeeecCCCccee
Q psy10487 403 ---NKRRKRKGKMKQSVSF---NDQE------KKLLDVSITTTDRHTGSCEALGSQPDME 450 (610)
Q Consensus 403 ---~~~~~~~~~~~~~~~~---~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~~~ 450 (610)
...|.+.+..-..... ...+ ..|.|......|.|.|+|.|.|..|..+
T Consensus 153 ~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 153 GTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp CCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred CcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 2233332211000000 0111 2467777777799999999999998755
No 402
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.23 E-value=2.7e-11 Score=101.57 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=71.0
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCE-EeccCCccceeeccCCcee----eeeeEEEEEecCCCC
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ-VLHNSSFDLLEEEEGDALF----EKSVSITLFNVTDLD 333 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~-~l~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D 333 (610)
.+|.+...+..+.+.+|++++|.|.+.+.|.|.+.|++++. .+...... ....++... ...+.|.|.+++.+|
T Consensus 5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~L~I~~v~~~D 82 (108)
T 3m45_A 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKK--ALRDNRIELVRASWHELSISVSDVSLSD 82 (108)
T ss_dssp ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEE--CSCCTTEEEEEESSSEEEEEECSCCGGG
T ss_pred cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCc--ccccCcEEEeecCCCcEEEEECCCChhH
Confidence 45777778889999999999999999999999999999876 33221110 000011010 034689999999999
Q ss_pred CeEEEEEeecCCcceeEEEEEEcC
Q psy10487 334 AGEYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 334 ~G~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
+|.|+|.|.| .|..+..+.|.|.
T Consensus 83 ~G~Y~C~~~n-~~~~~~~~~L~V~ 105 (108)
T 3m45_A 83 EGQYTCSLFT-MPVKTSKAYLTVL 105 (108)
T ss_dssp CEEEEEEECS-SSCEEEEEEEEEE
T ss_pred CeEEEEEEEc-CCCcEEEEEEEEE
Confidence 9999999999 8888889988884
No 403
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.6e-12 Score=104.19 Aligned_cols=82 Identities=26% Similarity=0.466 Sum_probs=68.5
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
+|.+...+....+.+|+.++|.|.+.|.|.|.+.|+|++..+.... .+.|.|.+++.+|+|.|+|
T Consensus 10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C 74 (96)
T 2ens_A 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------------SPVLILPEIGPQDQGTYSC 74 (96)
T ss_dssp SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC---------------CSEEEEESCCTTTCEEEEC
T ss_pred CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC---------------CCEEEECCCCcccCEEEEE
Confidence 5777888888889999999999999999999999999988765432 1389999999999999999
Q ss_pred EeecCCcce--eEEEEEEc
Q psy10487 340 YAENIRGNA--SGEISLDL 356 (610)
Q Consensus 340 ~a~N~~G~~--~~~~~L~V 356 (610)
.|.|..|.. +..+.|.|
T Consensus 75 ~a~n~~~~~~~s~~~~v~V 93 (96)
T 2ens_A 75 VATHSSHGPQESRAVSISI 93 (96)
T ss_dssp EECCSSCCCEECCCEEEEE
T ss_pred EEEeCCCCcEEEEEEEEEE
Confidence 999976643 44566665
No 404
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.22 E-value=8.8e-12 Score=115.86 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|+|.+.+..+......+.. .+..+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.........
T Consensus 68 ~d~G~Y~C~~~~~~g~~~~~~~~l-~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~ 146 (189)
T 2v44_A 68 EDAGIYRCQATDAKGQTQEATVVL-EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA 146 (189)
T ss_dssp GGCEEEEEEEECTTSCEEEEEEEE-EEECCCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEE
T ss_pred ccCeEEEEEEEeCCCCcEEEEEEE-EEecCCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEE
Confidence 467889999877654332222222 2235677766677788999999999999999999999999999887643221111
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 356 (610)
.. ..+.|.|.+++.+|+|.|+|.|.|..|.......+.|
T Consensus 147 ~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v 185 (189)
T 2v44_A 147 ML-------ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185 (189)
T ss_dssp EC-------TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEE
T ss_pred Ee-------cCCcEEEEEcCcccCeEEEEEEEccccCceeeeeEEE
Confidence 11 2248999999999999999999999977654444433
No 405
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.22 E-value=2.8e-11 Score=99.21 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=68.1
Q ss_pred CceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEE
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCY 340 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 340 (610)
|.|...+..+.+.+|++++|.|.+ +.|.|.+.|++++..+....+...... + ....|.|.+++.+|+|.|+|.
T Consensus 9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~-~-----~~~~L~I~~v~~~D~G~Y~C~ 81 (95)
T 2k1m_A 9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATE-G-----TRHTLTVREVGPADQGSYAVI 81 (95)
T ss_dssp CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEE-T-----TEEEEEESSCCTTCCSEEEEE
T ss_pred CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEc-C-----CEEEEEEcCCCcccCEEEEEE
Confidence 556666788899999999999999 889999999999998876543222211 1 124799999999999999999
Q ss_pred eecCCcceeEEEEEEcC
Q psy10487 341 AENIRGNASGEISLDLP 357 (610)
Q Consensus 341 a~N~~G~~~~~~~L~V~ 357 (610)
| |.....+.|.|.
T Consensus 82 a----g~~~~~~~l~V~ 94 (95)
T 2k1m_A 82 A----GSSKVKFDLKVI 94 (95)
T ss_dssp E----TTEEEEEEEEEE
T ss_pred E----CCceEEEEEEEe
Confidence 9 667777888773
No 406
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.3e-13 Score=129.99 Aligned_cols=131 Identities=23% Similarity=0.308 Sum_probs=108.3
Q ss_pred ccEEEcccC--CCcccchhhhcCCCCCcEEEccCCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEc
Q psy10487 83 LQRIYLKNS--GIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160 (610)
Q Consensus 83 L~~L~L~~n--~l~~i~~~~f~~l~~L~~LdLs~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 160 (610)
|+.+.+.++ .+..++ ..|..+++|++|+|++|+|..++ .|.++++|++|+|++|.++.++. .+..+++|+.|+|
T Consensus 25 l~~~~l~~~~~~l~~l~-~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCH-HHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhh-HHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEEC
Confidence 444444433 344443 37899999999999999999976 78899999999999999997754 4556789999999
Q ss_pred cCccccccCHHHhhcCccccccccccccccccCc-ccccCCCcccEEecCCCcccccCCc
Q psy10487 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHL 219 (610)
Q Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~l~l~~N~~~c~c~l 219 (610)
++|+|+.++ .+..+++|+.|++++|+++.++. ..+..+++|+.|++++|++.+.|..
T Consensus 101 ~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 101 SYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred cCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 999999874 58889999999999999998765 5678899999999999999887654
No 407
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.22 E-value=1.8e-11 Score=116.49 Aligned_cols=128 Identities=15% Similarity=0.141 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCCccCCCccccccccccc-CCCceeeeec-ceEeecCceEEEEEEEEecCC--CeEEEEeCCEEeccCCc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA-CPPNVTIKES-MVIREAGGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSF 306 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~-c~P~i~~~~~-~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~ 306 (610)
.+.+.|+|.+.+.........+...... -+|.+...+. .+.+.+|++++|.|.+.|.|. +.+.|++++..+.....
T Consensus 74 ~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~ 153 (213)
T 2x1w_L 74 SYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL 153 (213)
T ss_dssp TTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEE
T ss_pred hcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEE
Confidence 4678999998763322222112222211 2344555544 448899999999999999654 57999999876432211
Q ss_pred -c-ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487 307 -D-LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 307 -~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 358 (610)
. ..............+.|.|.+++.+|+|.|+|.|.|..|..++++.|.|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~ 207 (213)
T 2x1w_L 154 VNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207 (213)
T ss_dssp EEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred eccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence 0 000000000023346899999999999999999999999999999999843
No 408
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.22 E-value=2.2e-11 Score=112.35 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|.|.+.+..+......+.. .+..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+.....
T Consensus 70 ~d~G~Y~C~~~~~~~~~~~~~~~l-~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~--- 145 (182)
T 1rhf_A 70 SDAGRYWCQVEDGGETEISQPVWL-TVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP--- 145 (182)
T ss_dssp GGCEEEEEEESSCTTCEECCCEEE-EEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---
T ss_pred ccCeEEEEEEEcCCCcEEEEEEEE-EEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---
Confidence 467789999877643322222222 23357888888888899999999999999999999 9999999988754321
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEc
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDL 356 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V 356 (610)
..+.|.|.++ +|+|.|+|.|.|..|... .++.|.|
T Consensus 146 ----------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 146 ----------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp ----------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ----------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 2358999988 589999999999999885 4788776
No 409
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.22 E-value=3.1e-11 Score=129.78 Aligned_cols=103 Identities=12% Similarity=0.134 Sum_probs=65.3
Q ss_pred CCceeee-ecceEeecCceEEEEEEEEecCC---CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPE---PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG 335 (610)
Q Consensus 260 ~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~---p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 335 (610)
+|.+... +....+.+|+.++|.|.+.|.++ +.|+| ++..+.......... ..++.+...+.|.|.+++.+|+|
T Consensus 246 ~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~-~~~g~~~~~~~L~I~~~~~~d~G 322 (475)
T 1iga_A 246 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPER-DLCGCYSVSSVLPGCAEPWNHGK 322 (475)
T ss_pred CcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceE-CCCCCEEEEEEEEEchHHhccCC
Confidence 4555333 33334589999999999998754 69999 444433221111111 11122345678999999999999
Q ss_pred EEEEEeecCCcceeEEEEEEcCcccccccc
Q psy10487 336 EYTCYAENIRGNASGEISLDLPEINLATTL 365 (610)
Q Consensus 336 ~Y~C~a~N~~G~~~~~~~L~V~~~~~~p~~ 365 (610)
.|+|.|.|..|.......+.+.....+|.+
T Consensus 323 ~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v 352 (475)
T 1iga_A 323 TFTCTAAYPESKTPLTATLSKSGNTFRPEV 352 (475)
T ss_pred cEEEEEEcCCCCCceEEEeecCCCCCCCeE
Confidence 999999999998765555544322334433
No 410
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=103.68 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=69.9
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCC-CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPE-PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
++.|...+.++.+.+|++++|.|.+.|.|. +.+.|+|+|..+....+.....+.. ...|.|.+++.+|+|.|+
T Consensus 8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~------~~~L~I~~v~~~D~G~Y~ 81 (104)
T 2eny_A 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGR------KYILVVREAAPSDAGEVV 81 (104)
T ss_dssp CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETT------EEEEEECSCCTTTCSCEE
T ss_pred CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCC------EEEEEECCCCHHHCEEEE
Confidence 456777778899999999999999999885 4899999999887655432222111 248999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCcc
Q psy10487 339 CYAENIRGNASGEISLDLPEI 359 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~ 359 (610)
|.|.| ...++.|.|.+.
T Consensus 82 C~a~~----~~~~a~L~V~~~ 98 (104)
T 2eny_A 82 FSVRG----LTSKASLIVRER 98 (104)
T ss_dssp EEETT----EEEEECEEEECC
T ss_pred EEECC----eeEEEEEEEeCC
Confidence 99855 567788888543
No 411
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.22 E-value=3.8e-11 Score=119.62 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=52.5
Q ss_pred eeeeecceEeecCceEEEEEEEEec--CCCeEEEEeCC--EEec----cC-C-ccceee--ccCCceee-----eeeEEE
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGD--PEPTILWLLNG--QVLH----NS-S-FDLLEE--EEGDALFE-----KSVSIT 325 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g--~~l~----~~-~-~~~~~~--~~~~~~~~-----~~~~L~ 325 (610)
+.. +..+.+.+|++++|.|.+.+. +.+.+.|++.. .... .. . ...... ..++.... ....|.
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (280)
T 3fku_X 4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD 82 (280)
T ss_dssp EEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred EEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence 444 677889999999999999886 66899999732 1110 00 0 000000 00111111 124899
Q ss_pred EEecCCCCCeEEEEEeecC
Q psy10487 326 LFNVTDLDAGEYTCYAENI 344 (610)
Q Consensus 326 I~~v~~~D~G~Y~C~a~N~ 344 (610)
|.+++.+|+|.|.|.+.|.
T Consensus 83 I~~v~~~DsG~Y~C~~~~~ 101 (280)
T 3fku_X 83 LRSLRSEDTAVYYCARSPS 101 (280)
T ss_dssp ECSCCSTTCEECCEEECSS
T ss_pred ECCCChhhCEEEEEEEecC
Confidence 9999999999999999997
No 412
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.21 E-value=9e-12 Score=115.93 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=86.5
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|.|.+.+..++.....+... +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........
T Consensus 72 ~d~G~Y~C~~~~~~~~~~~~~~~l~-v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~ 150 (191)
T 1epf_A 72 DDAGIYKCVVTAEDGTQSEATVNVK-IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI 150 (191)
T ss_dssp GGCEEEEEEEEETTTEEEEEEEEEE-EECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEE
T ss_pred ccCEEEEEEEEcCCCcceEEEEEEE-eecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEE
Confidence 4678899988776543322222222 235677877788888999999999999999999999999999988654332222
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 356 (610)
.. ..+.|.|.+++.+|+|.|+|.|.|..|.......+.|
T Consensus 151 ~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 151 VL-------SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp EC-------TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred Ee-------cCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 21 1237999999999999999999999976554444433
No 413
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.21 E-value=6.4e-12 Score=118.87 Aligned_cols=118 Identities=21% Similarity=0.318 Sum_probs=87.4
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|.|.+.+..+......+......-++.+...+....+.+|+.++|.|.+ .|.|.|.+.|++++..+.......
T Consensus 82 ~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~- 160 (212)
T 2v9r_A 82 PDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI- 160 (212)
T ss_dssp CSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTE-
T ss_pred ccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceE-
Confidence 467789998876543322222222222235556666677889999999999999 999999999999999887544211
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE-EEEEEcC
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG-EISLDLP 357 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~L~V~ 357 (610)
. ...+.|.|.+++.+|+|.|+|.|.|..|.... .+.|.|.
T Consensus 161 ~--------~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~ 201 (212)
T 2v9r_A 161 T--------IRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL 201 (212)
T ss_dssp E--------EETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred E--------ccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE
Confidence 1 22348999999999999999999999998755 4888884
No 414
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.21 E-value=9.8e-11 Score=99.28 Aligned_cols=90 Identities=18% Similarity=0.307 Sum_probs=70.9
Q ss_pred cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
..+|.+...+....+.+|++++|.|.+.|. |.+.|+|++..+....+.....+.. ...|.|.+++.+|+|.|
T Consensus 17 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y 88 (113)
T 2edh_A 17 ALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGA------RCELQIRGLVAEDAGEY 88 (113)
T ss_dssp CSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETT------EEEEEECSCCSTTCEEE
T ss_pred cCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCC------EEEEEECCCChhhCEEE
Confidence 346788888888999999999999999775 7899999999887554322221111 23799999999999999
Q ss_pred EEEeecCCcceeEEEEEEcCcc
Q psy10487 338 TCYAENIRGNASGEISLDLPEI 359 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~~~ 359 (610)
+|.| |.....+.|.|.+.
T Consensus 89 ~C~a----~~~~~~~~l~V~~~ 106 (113)
T 2edh_A 89 LCMC----GKERTSAMLTVRAM 106 (113)
T ss_dssp EEEE----TTEEEEEEEEECCC
T ss_pred EEEe----CCCCEEEEEEEeCC
Confidence 9999 77888889988543
No 415
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.5e-11 Score=102.54 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=71.7
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 339 (610)
++.+...+.++.+.+|++++|.|.+.|.|.|.+.|+|+|..+....+.......+. ...|.|.+++.+|+|.|+|
T Consensus 13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C 87 (115)
T 2cr6_A 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGG-----YHVLTLRQLALKDSGTIYF 87 (115)
T ss_dssp CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTT-----BCCBEECSCCTTTCEEEEE
T ss_pred CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCC-----EEEEEEcCCChhhCEEEEE
Confidence 34677777889999999999999999999999999999998876654333212111 2379999999999999999
Q ss_pred EeecCCcceeEEEEEEcCc
Q psy10487 340 YAENIRGNASGEISLDLPE 358 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~~ 358 (610)
. +|.....+.|.|.+
T Consensus 88 ~----~g~~~~~~~L~V~~ 102 (115)
T 2cr6_A 88 E----AGDQRASAALRVTE 102 (115)
T ss_dssp E----ETTEECCEEEEEEC
T ss_pred E----ECCeeEEEEEEEEC
Confidence 9 46777778888853
No 416
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=3.7e-11 Score=100.00 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=72.9
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|++++|.|. .|.|.|.+.|++++..+....+..... ++ ....|.|.+++.+|+|.|+
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~-~~-----~~~~L~I~~v~~~D~G~Y~ 79 (103)
T 2dku_A 7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQ-EG-----LTLRLTISALEKADSDTYT 79 (103)
T ss_dssp CCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEE-ET-----TEEEEEEESCCTTTCSEEE
T ss_pred CCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEe-CC-----CEEEEEECCCCcccCEEEE
Confidence 4678888888999999999999999 589999999999998887654322211 11 1238999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCccccc
Q psy10487 339 CYAENIRGNASGEISLDLPEINLA 362 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~~ 362 (610)
|. .|.....+.|.|.+.+.+
T Consensus 80 C~----~g~~~~~~~l~V~~~p~~ 99 (103)
T 2dku_A 80 CD----IGQAQSRAQLLVQGRRSG 99 (103)
T ss_dssp EE----CSSCBCCEEEEEECSCCC
T ss_pred EE----eCCceEEEEEEEeCccCC
Confidence 98 677777888888654443
No 417
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.20 E-value=1.4e-11 Score=115.22 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=84.6
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCc-----eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPN-----VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~-----i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~ 305 (610)
.+.+.|+|.+.+..+.. ...+.... ..+|. +...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....
T Consensus 72 ~d~G~Y~C~~~n~~g~~-~~~~~l~V-~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~ 149 (197)
T 2j8h_A 72 DDATVYQVRATNQGGSV-SGTASLEV-EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG 149 (197)
T ss_dssp GGCSEEEEEEEETTEEE-EEEEEEEE-EEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSS
T ss_pred HhCEEEEEEEEECCCce-eEEEEEEE-cCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCC
Confidence 36778999886653321 11111111 11222 2223355678899999999999999999999999999887554
Q ss_pred ccceeeccCCceeeeeeEEEEEe-cCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFN-VTDLDAGEYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
+....... ..+.|.|.+ ++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 150 ~~~~~~~~------~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 150 HYQVIVTR------SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp SCEEEECS------SEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CEEEEEcC------CceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 33222211 235899999 99999999999999999999999998873
No 418
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.20 E-value=8.1e-11 Score=123.23 Aligned_cols=166 Identities=16% Similarity=0.292 Sum_probs=125.2
Q ss_pred cEEEcCCCCCCccCccc---CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEcc
Q psy10487 37 KSALCKDANFTALPSTL---DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l---~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs 113 (610)
..+...+ .++.|+... ..+|+.++|.+|.++.++..+|. ..+|+.+.|.+ ++..|...+|.++.+|+.|+|.
T Consensus 160 ~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 160 QEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC
T ss_pred eEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeCC-chheehhhHhhCCCCCCEEecC
Confidence 3444443 566665432 24788999988889888888886 46888888874 4888888888888888888888
Q ss_pred CCCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCcccc-----ccCHHHhhcCcccccccccccc
Q psy10487 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH-----SVHKDALIHLTALESLNLNGNR 188 (610)
Q Consensus 114 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~ 188 (610)
.| +..+...+|.+ .+|+.+.| .+.++.+...+|.++.+|+.+++.+|.+. .+...+|.++.+|+.++|. +.
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~ 310 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES 310 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred CC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence 64 77777778877 67888888 45577777778888888888888776655 5667778888888888887 44
Q ss_pred ccccCcccccCCCcccEEecCCC
Q psy10487 189 LKHLSESVFFPTPNLKTLSLDGN 211 (610)
Q Consensus 189 l~~~~~~~~~~~~~L~~l~l~~N 211 (610)
++.+...+|..+.+|+.+.+..|
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT
T ss_pred eEEEhhhhhcCCCCccEEEECcc
Confidence 77777778877778888777654
No 419
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.19 E-value=7.1e-11 Score=114.80 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=60.7
Q ss_pred CceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--------------CCEEeccCCc--cceeeccCCceeeeeeEE
Q psy10487 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--------------NGQVLHNSSF--DLLEEEEGDALFEKSVSI 324 (610)
Q Consensus 261 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--------------~g~~l~~~~~--~~~~~~~~~~~~~~~~~L 324 (610)
+.+...+..+.+.+|++++|.| ..+.|.+.+.|+| ++........ .+....... .....|
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~sL 78 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPD---GSYFTL 78 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCT---TSCEEE
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEecc---CceEEE
Confidence 4556677888999999999999 7788999999998 1111111100 000000000 113489
Q ss_pred EEEecCCCCCeEEEEEeecC----CcceeEEEEEEcC
Q psy10487 325 TLFNVTDLDAGEYTCYAENI----RGNASGEISLDLP 357 (610)
Q Consensus 325 ~I~~v~~~D~G~Y~C~a~N~----~G~~~~~~~L~V~ 357 (610)
.|.+++.+|+|.|.|.+.+. .+.....+.|.|.
T Consensus 79 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~ 115 (245)
T 4ei6_B 79 KIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVL 115 (245)
T ss_dssp EECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEE
T ss_pred EECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEe
Confidence 99999999999999999963 2333445566664
No 420
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.19 E-value=5.6e-11 Score=112.09 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=62.9
Q ss_pred ceEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487 269 MVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG 346 (610)
Q Consensus 269 ~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 346 (610)
.+.+.+|++++|.|.+ |.|.| .|.|++.+..+ .. ... ...++.|.|.+++.+|+|.|.|.|.|..|
T Consensus 16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~--~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 83 (210)
T 1gsm_A 16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GA--VQS------DTGRSVLTVRNASLSAAGTRVCVGSCGGR 83 (210)
T ss_dssp EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CC--EEE------ESSEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred ceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---Cc--EEe------cCCccEEEECccCcccCceEEEEEEeCCC
Confidence 3688999999999999 99998 99999954333 11 111 12346899999999999999999999999
Q ss_pred ceeEEEEEEcCc
Q psy10487 347 NASGEISLDLPE 358 (610)
Q Consensus 347 ~~~~~~~L~V~~ 358 (610)
...+.+.|.|..
T Consensus 84 ~~~~~~~ltV~~ 95 (210)
T 1gsm_A 84 TFQHTVQLLVYA 95 (210)
T ss_dssp EEEEEEEEEEEB
T ss_pred ceEEEEEEEEEe
Confidence 988899999843
No 421
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.19 E-value=2.1e-11 Score=114.02 Aligned_cols=112 Identities=18% Similarity=0.225 Sum_probs=86.3
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|.|.+.+..+......+.. .+..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+......
T Consensus 78 ~d~G~Y~C~~~~~~~~~~~~~~~l-~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-- 154 (195)
T 2c5d_C 78 SDTGQYQCLVFLGHQTFVSQPGYV-GLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-- 154 (195)
T ss_dssp TTCEEEEEEEEETTEEEECCCEEE-EECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--
T ss_pred cCCcEEEEEEEeCCCceecccEEE-EEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--
Confidence 467789998876543222121222 23456888888888899999999999999999999 99999999887654421
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEc
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDL 356 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V 356 (610)
...+.|.|.+++ |+|.|+|.|.|..|... ..+.|.|
T Consensus 155 ---------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 155 ---------GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp ---------SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ---------CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 123589999987 89999999999999985 7888887
No 422
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=7.8e-12 Score=103.87 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=67.4
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc--c-eeeccCCceeeeeeEEEEEecCCCCCe
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD--L-LEEEEGDALFEKSVSITLFNVTDLDAG 335 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~--~-~~~~~~~~~~~~~~~L~I~~v~~~D~G 335 (610)
-+|.+...+..+.+.+|+.++|.|.+.|.| |.+.|+|+|..+...... + .....+ ....|.|.+++.+|+|
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G 80 (101)
T 2edk_A 7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDG-----KRHILIFSDVVQEDRG 80 (101)
T ss_dssp CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECS-----SEEEEECSSCCGGGCS
T ss_pred CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECC-----CEEEEEECCCChhhCE
Confidence 357777778889999999999999999999 999999999988765421 1 111111 1247999999999999
Q ss_pred EEEEEeecCCcceeEEEEEEc
Q psy10487 336 EYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 336 ~Y~C~a~N~~G~~~~~~~L~V 356 (610)
.|+|.|.| ...++.|.|
T Consensus 81 ~Y~C~a~n----~~~~~~l~V 97 (101)
T 2edk_A 81 RYQVITNG----GQCEAELIV 97 (101)
T ss_dssp BEEEECSS----CEECCBEEE
T ss_pred EEEEEEcC----CcEEEEEEE
Confidence 99999998 334445555
No 423
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.19 E-value=2.2e-11 Score=116.28 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCccCCCccccccccccc--------------CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA--------------CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL 296 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~--------------c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~ 296 (610)
.+.+.|+|.+.+..+......+...... -+|.+...+....+.+|+.++|.|.+.|.|.|.+.|++
T Consensus 75 ~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~ 154 (218)
T 3k0w_A 75 KDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK 154 (218)
T ss_dssp GGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEE
T ss_pred hhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEE
Confidence 3567889988765443211111111111 12677777788899999999999999999999999999
Q ss_pred CCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-eeEEEEEEcCc
Q psy10487 297 NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLDLPE 358 (610)
Q Consensus 297 ~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~ 358 (610)
++..+..... +.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus 155 ~~~~~~~~~~---------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 155 NELPLTHETK---------------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp TTEECTTCCS---------------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred CCEECCCCCC---------------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 9988765431 37999999999999999999999987 56688888854
No 424
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.19 E-value=2.2e-13 Score=144.74 Aligned_cols=115 Identities=14% Similarity=0.238 Sum_probs=73.9
Q ss_pred CCCCCCCCCccCCCcc-cccccccccC-----C----CceeeeecceE--eecCceEEEEEEEEecC----CCeEEEEeC
Q psy10487 234 HPLSCTEPGMLQTKHW-DDVKAQEFAC-----P----PNVTIKESMVI--REAGGNVTMSCYVYGDP----EPTILWLLN 297 (610)
Q Consensus 234 ~~~~C~a~~~l~g~~~-~~v~~~~~~c-----~----P~i~~~~~~~~--v~~G~~v~l~C~~~g~P----~p~v~W~~~ 297 (610)
+.|+|.+.+..+.... ..+......| + |.+...+.... +.+|+.++|.|.+.|.| .+.|+|+++
T Consensus 192 g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~ 271 (434)
T 1igy_B 192 ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVD 271 (434)
T ss_dssp SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSS
T ss_pred CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeC
Confidence 8899998877654321 1221111011 0 45544443222 78999999999999984 358999999
Q ss_pred CEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee
Q psy10487 298 GQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349 (610)
Q Consensus 298 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 349 (610)
+..+......... ...++.+...+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 272 ~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 322 (434)
T 1igy_B 272 NVEVHTAQTQPRE-EQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAP 322 (434)
T ss_dssp SCCBCCCSCCCCC-CCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSC
T ss_pred CcccCCcccCcce-eCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCc
Confidence 9876543211111 11111223346899999999999999999999999753
No 425
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.18 E-value=1.3e-12 Score=139.78 Aligned_cols=176 Identities=16% Similarity=0.161 Sum_probs=104.9
Q ss_pred cEEEcCCCCCCccCc-cc-------CCCccEEEeecCCCCCCC----hhhhcccCCCCccEEEcccCCCcccc-----hh
Q psy10487 37 KSALCKDANFTALPS-TL-------DSDIQVLDLNNNKISYLT----KEAFKSIGLLNLQRIYLKNSGIREVH-----RD 99 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~-~l-------~~~L~~L~L~~n~i~~l~----~~~~~~~~l~~L~~L~L~~n~l~~i~-----~~ 99 (610)
+.++..++.+..... .+ ..+|++|+|++|.++... ...+. .+++|++|+|++|.+.... +.
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA--SKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH--hCCCccEEeccCCcCChHHHHHHHHH
Confidence 567777776654321 12 237888888888777643 23333 4677888888888776543 22
Q ss_pred hhcCCCCCcEEEccCCCCCCCC----cccccCCCCCcEEEeeCccccccCcCcC-----CCCCCccEEEccCccccccC-
Q psy10487 100 TFKYLTILVEVDLSDNQIAWLH----QDTFLGNDRLKVLYLNGNPITELRAGQF-----PKLPYLKTIELQHCQIHSVH- 169 (610)
Q Consensus 100 ~f~~l~~L~~LdLs~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-----~~l~~L~~L~L~~n~l~~~~- 169 (610)
.+..+++|++|+|++|+++... +..+..+++|++|+|++|.+.......+ ...++|+.|+|++|.++...
T Consensus 251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence 3345777888888888777632 3345557777778887777764322111 22356777777777766542
Q ss_pred ---HHHhhcCccccccccccccccccCccccc-----CCCcccEEecCCCccc
Q psy10487 170 ---KDALIHLTALESLNLNGNRLKHLSESVFF-----PTPNLKTLSLDGNPWC 214 (610)
Q Consensus 170 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~l~l~~N~~~ 214 (610)
+..+..+++|+.|++++|.+.......+. ..++|+.|++++|.+.
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 23445556777777777766554322221 1456667777666543
No 426
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.18 E-value=1.4e-11 Score=117.06 Aligned_cols=121 Identities=17% Similarity=0.291 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCCccCCCcccccccccc------cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEF------ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS 304 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~------~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~ 304 (610)
.+.+.|+|.+.+..+.. ...+..... ...|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...
T Consensus 74 ~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~ 152 (212)
T 2yd6_A 74 RDEAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTS 152 (212)
T ss_dssp TTCEEEEEEEEETTEEE-EEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC---
T ss_pred CCCeEEEEEEEcCCCcE-EEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCc
Confidence 46778999887655431 111111111 12366777777788899999999999999999999999999988754
Q ss_pred Ccc-ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEc
Q psy10487 305 SFD-LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDL 356 (610)
Q Consensus 305 ~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V 356 (610)
... ....... ...+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 153 ~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~ 202 (212)
T 2yd6_A 153 NNNGRIKQLRS----ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202 (212)
T ss_dssp ---CCEEEEEE----TTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCceEEEEec----CCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEE
Confidence 321 1111000 1136899999999999999999999999874 4566666
No 427
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.18 E-value=1e-11 Score=117.32 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCCccCCCc-ccccccccccCCCceeeeecceEeecCceEEEEEE-EEecCCCeEEEEeCCE-EeccCCcc
Q psy10487 231 LYSHPLSCTEPGMLQTKH-WDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCY-VYGDPEPTILWLLNGQ-VLHNSSFD 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~-~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~-~~g~P~p~v~W~~~g~-~l~~~~~~ 307 (610)
.+.+.|+|.+.+..+... ...+.. .+..+|.+...+....+.+|+.++|.|. +.|.|.|.+.|++++. .+......
T Consensus 75 ~D~G~Y~C~~~~~~g~~~~~~~~~l-~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~ 153 (212)
T 1f97_A 75 KDNGEYTCMVSEEGGQNYGEVSIHL-TVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKK 153 (212)
T ss_dssp GGCEEEEEEEEETTSSSEEEEEEEE-EEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----
T ss_pred ccCeEEEEEEEccCCCcccEEEEEE-EEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccc
Confidence 467789998866543111 111221 2235666666666678899999999999 7999999999999999 77654432
Q ss_pred ceeeccCCcee-eeeeEEEEEecCCCCCeEEEEEeecCCcce--eEEEEEEcCc
Q psy10487 308 LLEEEEGDALF-EKSVSITLFNVTDLDAGEYTCYAENIRGNA--SGEISLDLPE 358 (610)
Q Consensus 308 ~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~--~~~~~L~V~~ 358 (610)
........... ...+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred cccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 11111110000 123589999999999999999999999988 5677777743
No 428
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=1.2e-11 Score=115.03 Aligned_cols=117 Identities=25% Similarity=0.330 Sum_probs=87.7
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|.|.+.+..+......+ ...+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....... .
T Consensus 72 ~d~G~Y~C~~~~~~~~~~~~~~-~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~-~ 149 (192)
T 2iep_A 72 SDDGIYCCTANNGVGGAVESCG-ALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIA-V 149 (192)
T ss_dssp GGCEEEEEEEECSSSCCEEEEE-EEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEE-E
T ss_pred ccCeEEEEEEEcCCCceeEeEE-EEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEE-E
Confidence 4677899988765543222111 1222346777777778889999999999999999999999999999887554311 1
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-eEEEEEEcC
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLP 357 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~ 357 (610)
...+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 150 --------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 189 (192)
T 2iep_A 150 --------LESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189 (192)
T ss_dssp --------CTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred --------ecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence 112479999999999999999999999987 456777773
No 429
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.18 E-value=9.7e-12 Score=122.98 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=63.8
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecC-----CCeEEEEeCC--EE---eccCCccceeeccCCceee---eeeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLLNG--QV---LHNSSFDLLEEEEGDALFE---KSVSIT 325 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P-----~p~v~W~~~g--~~---l~~~~~~~~~~~~~~~~~~---~~~~L~ 325 (610)
+.+.+...+..+.+.+|++++|.|.+.+.| .+.+.|++.. .. +............++.... ....|+
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~ 93 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK 93 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence 456777778889999999999999999887 5899999842 21 1100000000000111111 134899
Q ss_pred EEecCCCCCeEEEEEeecCCcc-eeEEEEEEcC
Q psy10487 326 LFNVTDLDAGEYTCYAENIRGN-ASGEISLDLP 357 (610)
Q Consensus 326 I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~ 357 (610)
|.+++.+|+|.|.|.|.|..+. ....+.|.|.
T Consensus 94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~ 126 (268)
T 1x9q_A 94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIK 126 (268)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEC--
T ss_pred ECCCChhHCEEEEEEEecCCCceEcCCEEEEEc
Confidence 9999999999999999998653 2234556654
No 430
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.17 E-value=1.5e-10 Score=111.07 Aligned_cols=92 Identities=11% Similarity=0.169 Sum_probs=58.7
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EE---ecc-CC--ccceeec--cCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QV---LHN-SS--FDLLEEE--EGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~---l~~-~~--~~~~~~~--~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.+.+ .+.+.|+|.. .. +.. .. ....... .++.... ....|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (223)
T 1dee_B 6 ESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS 85 (223)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred cCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence 34677899999999999999876 5889999842 21 110 00 0000000 1111111 135899999
Q ss_pred cCCCCCeEEEEEeecCCc------ceeEEEEEEcC
Q psy10487 329 VTDLDAGEYTCYAENIRG------NASGEISLDLP 357 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G------~~~~~~~L~V~ 357 (610)
++.+|+|.|.|.+.|..| .....+.|.|.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~ 120 (223)
T 1dee_B 86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVS 120 (223)
T ss_dssp CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEEC
T ss_pred CCHHHCEEEEEEEeccccCcccceeecCcEEEEEc
Confidence 999999999999999764 11234577775
No 431
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.17 E-value=5.1e-12 Score=135.27 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=104.1
Q ss_pred EEEcCCCCCCccCcc--c--CCCccEEEeecCCCCCCC----hhhhcccCCCCccEEEcccCCCcccchhhh-cCCC---
Q psy10487 38 SALCKDANFTALPST--L--DSDIQVLDLNNNKISYLT----KEAFKSIGLLNLQRIYLKNSGIREVHRDTF-KYLT--- 105 (610)
Q Consensus 38 ~~~C~~~~l~~lP~~--l--~~~L~~L~L~~n~i~~l~----~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f-~~l~--- 105 (610)
.++....+++..+.. + .++|++|+|++|.|+... ...+. .+++|++|+|++|.+.......+ ..+.
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 345555555543311 1 246777777777766432 22333 46777777777777765443333 3344
Q ss_pred -CCcEEEccCCCCCCCC----cccccCCCCCcEEEeeCccccccCcC-----cCCCCCCccEEEccCccccccC----HH
Q psy10487 106 -ILVEVDLSDNQIAWLH----QDTFLGNDRLKVLYLNGNPITELRAG-----QFPKLPYLKTIELQHCQIHSVH----KD 171 (610)
Q Consensus 106 -~L~~LdLs~n~l~~l~----~~~f~~l~~L~~L~Ls~N~l~~l~~~-----~~~~l~~L~~L~L~~n~l~~~~----~~ 171 (610)
+|++|+|++|+|.... +..|..+++|++|+|++|.++..... .+...++|+.|+|++|+++... +.
T Consensus 85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 5777777777776432 45667777777777777776643221 1223456777777777777643 33
Q ss_pred HhhcCccccccccccccccccCccccc-----CCCcccEEecCCCccc
Q psy10487 172 ALIHLTALESLNLNGNRLKHLSESVFF-----PTPNLKTLSLDGNPWC 214 (610)
Q Consensus 172 ~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~l~l~~N~~~ 214 (610)
.+..+++|+.|++++|.+.......+. ..++|+.|++++|.+.
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 455567777777777776654332221 2446777777777654
No 432
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.17 E-value=1.2e-11 Score=117.60 Aligned_cols=125 Identities=17% Similarity=0.264 Sum_probs=87.2
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+..+......+......-+|.+...+....+.+|+.++|.|.+ .|.|.|.+.|++++..+........
T Consensus 79 ~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~ 158 (217)
T 2vr9_A 79 QDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSF 158 (217)
T ss_dssp BCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC--
T ss_pred ccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCccccccc
Confidence 467889998876544322222222222235666667778889999999999999 8999999999999998874332110
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 356 (610)
. ..........+.|.|.+++.+|+|.|+|.|.|..|....++.+.+
T Consensus 159 ~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv 204 (217)
T 2vr9_A 159 G-ASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204 (217)
T ss_dssp --CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred c-cCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence 0 111111223358999999999999999999999999877655444
No 433
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.17 E-value=2.1e-10 Score=122.62 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=98.3
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEE---ecc---CCccceeec--cCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQV---LHN---SSFDLLEEE--EGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~---l~~---~~~~~~~~~--~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.| .+.+.|+|. +.. +.. ......... .++.... ..+.|.|.+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (457)
T 1hzh_H 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (457)
T ss_dssp ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence 45567889999999999999987 789999984 321 100 000000000 0111111 125899999
Q ss_pred cCCCCCeEEEEEeecCCc------------ceeEEEEEEcCcc-cccccccc-CCcceeehhhhHHHHHHHHHhheeEEE
Q psy10487 329 VTDLDAGEYTCYAENIRG------------NASGEISLDLPEI-NLATTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFC 394 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G------------~~~~~~~L~V~~~-~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (610)
++.+|+|.|+|.|.|..| .....+.|.|... ..+|.+.. .+......+ .. +.+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g-~~------------v~L 152 (457)
T 1hzh_H 86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSG-GT------------AAL 152 (457)
T ss_dssp CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTT-CC------------EEE
T ss_pred CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCC-Cc------------EEE
Confidence 999999999999999876 2334556776432 12232221 111111111 11 133
Q ss_pred EEEeeec-c---cccccccCCccc--cc-cccccc------cceeeeeeeeccCcceeeeecCCCcceeeeeecc
Q psy10487 395 VCRAHEH-K---NKRRKRKGKMKQ--SV-SFNDQE------KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSL 456 (610)
Q Consensus 395 ~~~~~~~-~---~~~~~~~~~~~~--~~-~~~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 456 (610)
.|...+. + ...|.+...... .. .....+ ..|.|.++..+| |.|+|.|.|..|.......+.
T Consensus 153 ~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~ 226 (457)
T 1hzh_H 153 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAE 226 (457)
T ss_dssp EEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECC
T ss_pred EEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEec
Confidence 4444333 2 223433221100 00 000111 268888888889 999999999988766555544
No 434
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.17 E-value=2.9e-11 Score=133.38 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=69.4
Q ss_pred cceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCc--cc-eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeec
Q psy10487 268 SMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSF--DL-LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343 (610)
Q Consensus 268 ~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~--~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 343 (610)
..+.+.+|++++|.|.+ .|.|.|.|.|++++..+..... .. .....++......++|.|.+++.+|+|.|+|++.|
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n 453 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN 453 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence 34678899999999999 8999999999998653211100 00 00001111222335899999999999999999999
Q ss_pred CCcce-eEEEEEEcCcccccccccc
Q psy10487 344 IRGNA-SGEISLDLPEINLATTLSK 367 (610)
Q Consensus 344 ~~G~~-~~~~~L~V~~~~~~p~~~~ 367 (610)
..|.. ...+.|.|...+..|.+..
T Consensus 454 ~~~~~~~~~~~l~V~~~~~~p~i~~ 478 (581)
T 3o3u_N 454 RNGKETKSNYRVRVYQIPGKPEIVD 478 (581)
T ss_dssp TTSCEEEEEEEEEEEBCCCCCEEES
T ss_pred CCCceeEEEEEEEEEcCCCCCEEEc
Confidence 99987 7788998865444444443
No 435
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.16 E-value=6.4e-11 Score=116.89 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=61.3
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec---cCCccceeecc----CCcee----eeeeEEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH---NSSFDLLEEEE----GDALF----EKSVSITL 326 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~---~~~~~~~~~~~----~~~~~----~~~~~L~I 326 (610)
.+.+...+..+.+.+|++++|.|.+. .+.+.+.|+| .+.... ........... ++... ...+.|+|
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 35566667788999999999999986 6889999998 222110 00000000000 11111 11458999
Q ss_pred EecCCCCCeEEEEEeecC--CcceeEEEEEEcC
Q psy10487 327 FNVTDLDAGEYTCYAENI--RGNASGEISLDLP 357 (610)
Q Consensus 327 ~~v~~~D~G~Y~C~a~N~--~G~~~~~~~L~V~ 357 (610)
.+++.+|+|.|+|.+.|. .+.....+.|.|.
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~ 137 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVL 137 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEE
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEe
Confidence 999999999999999984 3344445566664
No 436
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.16 E-value=2.3e-10 Score=112.62 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=59.9
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEec----cC--Cccceee--ccCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVLH----NS--SFDLLEE--EEGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l~----~~--~~~~~~~--~~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.| .+.|.|+|+. ..+. .. ....... ..++.... ....|+|.+
T Consensus 12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 91 (261)
T 2xqy_G 12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS 91 (261)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence 35677899999999999999887 6899999852 2111 00 0000000 01111111 135899999
Q ss_pred cCCCCCeEEEEEeecCCcc---eeEEEEEEcCc
Q psy10487 329 VTDLDAGEYTCYAENIRGN---ASGEISLDLPE 358 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G~---~~~~~~L~V~~ 358 (610)
++.+|+|.|.|.+.|..+. ....+.|.|..
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~ 124 (261)
T 2xqy_G 92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSS 124 (261)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred CCcccCeEEEEEEecCCCcceEECCCEEEEEcc
Confidence 9999999999999997541 22345777753
No 437
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.15 E-value=8.4e-11 Score=98.23 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=65.5
Q ss_pred CCCceeeeecc-eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 259 CPPNVTIKESM-VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 259 c~P~i~~~~~~-~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
.+|.|...+.. +.+.+|+.++|.|.+ +.|.|.+.|+|+|..+...........++. ...|.|.+++.+|+|.|
T Consensus 14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y 87 (104)
T 1pd6_A 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA-----KRTLTISQCSLADDAAY 87 (104)
T ss_dssp TTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETT-----EEEEEECSCSSSSCEEE
T ss_pred CCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCC-----EEEEEECCCCcccCEEE
Confidence 45777666655 789999999999999 899999999999998876521111111111 23899999999999999
Q ss_pred EEEeecCCcceeEEEEEEc
Q psy10487 338 TCYAENIRGNASGEISLDL 356 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V 356 (610)
+|.|.| ...++.|.|
T Consensus 88 ~C~a~~----~~~~~~l~V 102 (104)
T 1pd6_A 88 QCVVGG----EKCSTELFV 102 (104)
T ss_dssp EEEETT----EEECCEEEE
T ss_pred EEEECC----CcEEEEEEE
Confidence 999944 445556655
No 438
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.15 E-value=1.5e-11 Score=116.27 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=81.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCE--EeccCCcc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQ--VLHNSSFD 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~--~l~~~~~~ 307 (610)
.+.+.|.|.+.+..+. ....+... +..+|.+...+....+.+|+.++|.|.+ .|.|.|.+.|++++. .+....
T Consensus 94 ~D~G~Y~C~~~~~~~~-~~~~~~l~-V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~-- 169 (214)
T 3jz7_A 94 SDIGTYQCKVKKAPGV-ANKKFLLT-VLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPW-- 169 (214)
T ss_dssp GGCEEEEEEEEETTEE-EEEEEEEE-EECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGG--
T ss_pred hhCeEEEEEEEeCCCc-cccEEEEE-EEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccc--
Confidence 4678899988654332 12222222 2345665555555568899999999999 899999999999543 332211
Q ss_pred ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
... ...+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 170 ~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 170 LAE--------MTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211 (214)
T ss_dssp GGG--------TTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred eec--------cCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence 111 112489999999999999999999999999999999884
No 439
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-10 Score=97.37 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=68.4
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCC----------ccceeeccCCceeeeeeEEEEEec
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS----------FDLLEEEEGDALFEKSVSITLFNV 329 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~----------~~~~~~~~~~~~~~~~~~L~I~~v 329 (610)
+|.|...+.++.+.+|+.++|.|.+.+ .|.+.|+|||..+..+. +..+ ..++. ...|+|.++
T Consensus 8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i-~~~g~-----~~~L~I~~v 79 (112)
T 2e6q_A 8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRI-EQKGL-----QHRLILHAV 79 (112)
T ss_dssp CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEE-CCBTT-----EEEEEEESC
T ss_pred CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEE-EeCCc-----EEEEEECCC
Confidence 467778889999999999999999998 78899999999998765 2111 11111 238999999
Q ss_pred CCCCCeEEEEEeecCCcceeEEEEEEcCcc
Q psy10487 330 TDLDAGEYTCYAENIRGNASGEISLDLPEI 359 (610)
Q Consensus 330 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~ 359 (610)
+.+|+|.|+|..-+ ....++.|.|.+.
T Consensus 80 ~~~D~G~Y~~~~~~---~~~ssA~L~V~~~ 106 (112)
T 2e6q_A 80 KHQDSGALVGFSCP---GVQDSAALTIQES 106 (112)
T ss_dssp CSTTCSEEEEEEET---TEEEEEEEEEECS
T ss_pred CHHHCccEEEEEEC---CeeEEEEEEEeCC
Confidence 99999999774433 4567888888543
No 440
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.15 E-value=2.7e-10 Score=108.93 Aligned_cols=170 Identities=11% Similarity=0.093 Sum_probs=90.4
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeC--CEEec----cCC----ccceee--ccCCceee-----eeeEEEE
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLN--GQVLH----NSS----FDLLEE--EEGDALFE-----KSVSITL 326 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~--g~~l~----~~~----~~~~~~--~~~~~~~~-----~~~~L~I 326 (610)
.+..+.+.+|++++|.|.+.+.+ .+.+.|++. +.... ... ...... ..++.... ....|.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 85 (221)
T 3m8o_H 6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM 85 (221)
T ss_dssp EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence 45567899999999999999844 688999973 21110 000 000000 00111111 1236999
Q ss_pred EecCCCCCeEEEEEeecCC--cceeEEEEEEcCc-cccccccc-cCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-c
Q psy10487 327 FNVTDLDAGEYTCYAENIR--GNASGEISLDLPE-INLATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-H 401 (610)
Q Consensus 327 ~~v~~~D~G~Y~C~a~N~~--G~~~~~~~L~V~~-~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 401 (610)
.+++.+|+|.|.|.+.|.. ......+.|.|.. ....|.+. ..+... ..+. . +...|...+ .
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~-~------------v~L~C~~~~~~ 151 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDG-N------------VVIACLVQGFF 151 (221)
T ss_dssp CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTT-E------------EEEEEEEEEEB
T ss_pred CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCC-C------------EEEEEEEEeeE
Confidence 9999999999999999974 2234445666642 22333332 111111 1111 1 123343333 2
Q ss_pred cc-ccccccCCcccccc-------c-c-----ccccceeeeeeeeccCcceeeeecCCCcce
Q psy10487 402 KN-KRRKRKGKMKQSVS-------F-N-----DQEKKLLDVSITTTDRHTGSCEALGSQPDM 449 (610)
Q Consensus 402 ~~-~~~~~~~~~~~~~~-------~-~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 449 (610)
+. .....|.+.+..+. . . .....|.|..+...|.|.|+|.|.|..|..
T Consensus 152 P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 152 PQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp SSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred CCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 21 11122222222110 0 0 111247777777789999999999988764
No 441
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.15 E-value=5.9e-11 Score=116.62 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=53.7
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEec----cCC--ccceee--ccCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVLH----NSS--FDLLEE--EEGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l~----~~~--~~~~~~--~~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.|.+ .+.+.|++.. ..+. ... ...... ..++..+. ....|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (257)
T 3bn9_D 6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS 85 (257)
T ss_dssp EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence 45567889999999999999876 6889999842 2110 000 000000 01111111 135899999
Q ss_pred cCCCCCeEEEEEeecCCc
Q psy10487 329 VTDLDAGEYTCYAENIRG 346 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~G 346 (610)
++.+|+|.|.|.+.|..|
T Consensus 86 v~~~DsG~Y~C~~~~~~g 103 (257)
T 3bn9_D 86 LRAEDTAVYYCARPYLTY 103 (257)
T ss_dssp CCGGGCEEEEEEEECCSS
T ss_pred CChhhCEEEEEEEecCCC
Confidence 999999999999999875
No 442
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.14 E-value=2.7e-11 Score=117.88 Aligned_cols=84 Identities=17% Similarity=0.286 Sum_probs=55.5
Q ss_pred ceeeeecceEeecCceEEEEEEEEec--CCCeEEEEeCC--EE---ec-cCCccceee----ccCCceee-----eeeEE
Q psy10487 262 NVTIKESMVIREAGGNVTMSCYVYGD--PEPTILWLLNG--QV---LH-NSSFDLLEE----EEGDALFE-----KSVSI 324 (610)
Q Consensus 262 ~i~~~~~~~~v~~G~~v~l~C~~~g~--P~p~v~W~~~g--~~---l~-~~~~~~~~~----~~~~~~~~-----~~~~L 324 (610)
.+...+..+.+.+|++++|.|.+.+. +.+.+.|+|.. .. +. ......... ..++.... ....|
T Consensus 3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (242)
T 1hxm_B 3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL 82 (242)
T ss_dssp EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence 34556778889999999999999986 67899999842 21 11 000000000 01111111 24589
Q ss_pred EEEecCCCCCeEEEEEeecCC
Q psy10487 325 TLFNVTDLDAGEYTCYAENIR 345 (610)
Q Consensus 325 ~I~~v~~~D~G~Y~C~a~N~~ 345 (610)
+|.+++.+|+|.|.|.+.|..
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~ 103 (242)
T 1hxm_B 83 TIHNVEKQDIATYYCALWEAQ 103 (242)
T ss_dssp EECSCCGGGCEEEEEEEEEEC
T ss_pred EECCCCcccCEEEEEeeecCC
Confidence 999999999999999999863
No 443
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.14 E-value=8.6e-11 Score=113.87 Aligned_cols=91 Identities=13% Similarity=0.239 Sum_probs=58.5
Q ss_pred ceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--C------------EEeccCCc-cce-eeccCCceeeeeeEEE
Q psy10487 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--G------------QVLHNSSF-DLL-EEEEGDALFEKSVSIT 325 (610)
Q Consensus 262 ~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g------------~~l~~~~~-~~~-~~~~~~~~~~~~~~L~ 325 (610)
.+...+..+.+.+|++++|.|.+.+ |.+.+.|+|. + ........ .+. ..... .....|.
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~sL~ 78 (240)
T 3q5y_A 4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFD----DYHSEMN 78 (240)
T ss_dssp CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECT----TSCEEEE
T ss_pred ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCC----CCEEEEE
Confidence 4556677889999999999999876 8889999982 1 11111000 000 00000 1235899
Q ss_pred EEecCCCCCeEEEEEeecC---CcceeEEEEEEcC
Q psy10487 326 LFNVTDLDAGEYTCYAENI---RGNASGEISLDLP 357 (610)
Q Consensus 326 I~~v~~~D~G~Y~C~a~N~---~G~~~~~~~L~V~ 357 (610)
|.+++.+|+|.|.|.+.+. .+.....+.|.|.
T Consensus 79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~ 113 (240)
T 3q5y_A 79 MSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVL 113 (240)
T ss_dssp ECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEE
T ss_pred ECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEe
Confidence 9999999999999999843 2233344556664
No 444
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.14 E-value=8.1e-11 Score=115.29 Aligned_cols=180 Identities=10% Similarity=0.081 Sum_probs=96.2
Q ss_pred eecceEeecCceEEEEEEEEe--cCCCeEEEEeCC--EE--ec--c--CCccceee--ccCCceee-----eeeEEEEEe
Q psy10487 266 KESMVIREAGGNVTMSCYVYG--DPEPTILWLLNG--QV--LH--N--SSFDLLEE--EEGDALFE-----KSVSITLFN 328 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~g--~~--l~--~--~~~~~~~~--~~~~~~~~-----~~~~L~I~~ 328 (610)
.+..+.+.+|++++|.|.+.+ .+.+.+.|+|.. .. .. . ........ ..++.... ....|+|.+
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (253)
T 3liz_H 6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS 85 (253)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 456778999999999999987 346789999832 11 11 0 00000000 00111111 224699999
Q ss_pred cCCCCCeEEEEEeecCC----cceeEEEEEEcC-ccccccccccCCcceeehhhhHHHHHHHHHhheeEEEEEEeee-cc
Q psy10487 329 VTDLDAGEYTCYAENIR----GNASGEISLDLP-EINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHE-HK 402 (610)
Q Consensus 329 v~~~D~G~Y~C~a~N~~----G~~~~~~~L~V~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 402 (610)
++.+|+|.|.|.+.|.. +.....+.|.|. .....|.+........... ...+...|...+ .+
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~------------g~~v~L~C~~~g~~P 153 (253)
T 3liz_H 86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQT------------NSMVTLGCLVKGYFP 153 (253)
T ss_dssp CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------------------CCEEEEEEEEEEEBS
T ss_pred CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCC------------CCcEEEEEEEeeEeC
Confidence 99999999999999862 333444567774 2223333321111100000 111133444333 22
Q ss_pred ---cccccccCCccc-----cc---cccccccceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 403 ---NKRRKRKGKMKQ-----SV---SFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 403 ---~~~~~~~~~~~~-----~~---~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
...|.+.+.... .. ......+.|.|..+..+| |.|+|.|.|..+.......+.+.
T Consensus 154 ~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 154 EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp SCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred CCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 233433322100 00 000112457777777778 99999999999987776666543
No 445
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.13 E-value=4.7e-11 Score=99.40 Aligned_cols=88 Identities=22% Similarity=0.394 Sum_probs=69.1
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
.+|.+...+..+.+.+|++++|.|.+.|.|.| +.|++++..+....+..... ++ ....|.|.+++.+|+|.|+
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~-~~-----~~~~L~I~~v~~~D~G~Y~ 79 (103)
T 2e7b_A 7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-EG-----AMLELVVRNLRPQDSGRYS 79 (103)
T ss_dssp CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEE-CS-----SEEEEEECSCCTTTCCCEE
T ss_pred CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEE-cC-----CEEEEEEccCCcccCEEEE
Confidence 46778777888999999999999999999999 99999998876544322221 11 1236999999999999999
Q ss_pred EEeecCCcceeEEEEEEcC
Q psy10487 339 CYAENIRGNASGEISLDLP 357 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~ 357 (610)
|. .|.....+.|.|.
T Consensus 80 C~----~g~~~~~~~l~V~ 94 (103)
T 2e7b_A 80 CS----FGDQTTSATLTVT 94 (103)
T ss_dssp EE----CSSCBCCBCEEEE
T ss_pred EE----ECCcEEEEEEEEE
Confidence 98 5666677777774
No 446
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.13 E-value=8e-11 Score=116.41 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEe--CCEEec---c-CC
Q psy10487 232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLH---N-SS 305 (610)
Q Consensus 232 ~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~--~g~~l~---~-~~ 305 (610)
+...|.|.+.+..++.. ..+...+...+..+.+.+|++++|.|.+.+ +.+.+.|+| .+.... . ..
T Consensus 7 ~~~~y~~~~~~~~g~~~--------~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~ 77 (270)
T 3qib_D 7 DLIAYLKQATKGGGGSG--------GGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQN 77 (270)
T ss_dssp -----------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEET
T ss_pred hHHHHHHHHhccCCccc--------cccceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECC
Confidence 45567787765443321 124456677788899999999999999866 788999998 221110 0 00
Q ss_pred cc----------ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc----ceeEEEEEEcC
Q psy10487 306 FD----------LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG----NASGEISLDLP 357 (610)
Q Consensus 306 ~~----------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G----~~~~~~~L~V~ 357 (610)
.. +...... ......|.|.+++.+|+|.|.|.+.|..+ .....+.|.|.
T Consensus 78 ~~~~~~~~~~~~r~~~~~~---~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~ 140 (270)
T 3qib_D 78 QEVLQQIDMTEKRFSAECP---SNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVL 140 (270)
T ss_dssp TEEEEECHHHHHHEEEECC---TTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEE
T ss_pred CCceecCCccCCcEEEEeC---CCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEc
Confidence 00 0000000 01235899999999999999999997432 23344556664
No 447
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.13 E-value=5.8e-11 Score=112.24 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=84.3
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|.|.+.+...+............-++..........+.+|+.+.+.|.+.|.|.|.|+|++++..+......
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~--- 165 (218)
T 4frw_A 89 ADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF--- 165 (218)
T ss_dssp GGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE---
T ss_pred HHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE---
Confidence 36678888765544333222222222222333344456667788999999999999999999999998876543321
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 356 (610)
...+ .....+.|.|.++..+|+|.|+|+|.|.+|.....+.+.|
T Consensus 166 ~~~~--~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v 209 (218)
T 4frw_A 166 KHSR--SAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL 209 (218)
T ss_dssp ECSS--SEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred ecCC--cEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence 1111 2244568999999999999999999999999887777776
No 448
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=3.8e-10 Score=95.53 Aligned_cols=88 Identities=23% Similarity=0.342 Sum_probs=66.3
Q ss_pred CCceeeeecc---eEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487 260 PPNVTIKESM---VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336 (610)
Q Consensus 260 ~P~i~~~~~~---~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 336 (610)
+|.+...+.. +.+.+|+.+.|.|.+. .|.|.+.|+|+|..+....+....... ....|.|.+++.+|+|.
T Consensus 10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~------~~~~L~I~~v~~~D~G~ 82 (113)
T 2cpc_A 10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKED------TVRRLVLPAVQLEDSGE 82 (113)
T ss_dssp CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECS------SEEEEEESSCCTTTCEE
T ss_pred CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECC------CEEEEEECCCCcccCEE
Confidence 4555555544 6788999999999995 899999999999988765432222111 12489999999999999
Q ss_pred EEEEeecCCcceeEEEEEEcCc
Q psy10487 337 YTCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 337 Y~C~a~N~~G~~~~~~~L~V~~ 358 (610)
|+|.|.| .+..+.|.|.+
T Consensus 83 Y~C~a~n----~~~~~~l~V~~ 100 (113)
T 2cpc_A 83 YLCEIDD----ESASFTVTVTE 100 (113)
T ss_dssp EEEESSS----CEEEEEEEEEC
T ss_pred EEEEEec----CcEEEEEEEec
Confidence 9999999 55677777743
No 449
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=115.66 Aligned_cols=86 Identities=21% Similarity=0.311 Sum_probs=58.6
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--EE---ecc-CC--ccceee--ccCCcee----eeeeEEE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QV---LHN-SS--FDLLEE--EEGDALF----EKSVSIT 325 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~~---l~~-~~--~~~~~~--~~~~~~~----~~~~~L~ 325 (610)
.+.+...+..+.+.+|++++|.|.+.+.|.+.+.|+|++ .. +.. .. ...... ..++... .....|.
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~ 103 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT 103 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence 466777788899999999999999999899999999853 11 100 00 000000 0011111 1235899
Q ss_pred EEecCCCCCeEEEEEeecCC
Q psy10487 326 LFNVTDLDAGEYTCYAENIR 345 (610)
Q Consensus 326 I~~v~~~D~G~Y~C~a~N~~ 345 (610)
|.+++.+|+|.|+|.|.|..
T Consensus 104 I~~v~~~D~G~Y~C~~~~~~ 123 (279)
T 2wbj_D 104 VTSAHPEDSSFYICSARDLT 123 (279)
T ss_dssp ESSCCGGGCEEEEEEEEETT
T ss_pred EccCCccCCEEEEEEEcccc
Confidence 99999999999999999953
No 450
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.12 E-value=2e-10 Score=109.58 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEe-CCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLL-NGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~-~g~~l~~~~~~~ 308 (610)
.+.+.|.|.+.+.........+.......+|.+...+ ...+.+|+.++|.|.+ .|.|.|.+.|++ ++..+.......
T Consensus 82 ~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~ 160 (222)
T 4i0k_A 82 TDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS 160 (222)
T ss_dssp GGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEE
T ss_pred ccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCccee
Confidence 4678899987653222222222222222235555444 3467789999999999 899999999999 454443322111
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcc
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~ 359 (610)
.....++ ....|.|.+++.+|+|.|+|.|.|..|....++.|.|.+.
T Consensus 161 -~~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 207 (222)
T 4i0k_A 161 -QMANERG---LFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ 207 (222)
T ss_dssp -EEECTTS---CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred -EEcCCCC---eEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence 1111111 1235899999999999999999999999999999999543
No 451
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.12 E-value=2.8e-10 Score=119.15 Aligned_cols=166 Identities=16% Similarity=0.261 Sum_probs=137.0
Q ss_pred cEEEcCCCCCCccCccc--CCCccEEEeecCCCCCCChhhhcccCCCCccEEEcccCCCcccchhhhcCCCCCcEEEccC
Q psy10487 37 KSALCKDANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114 (610)
Q Consensus 37 ~~~~C~~~~l~~lP~~l--~~~L~~L~L~~n~i~~l~~~~~~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~LdLs~ 114 (610)
..+...+ +++.|+..- ..+|+.+.|.+ .++.|...+|. ++.+|+.++|.+|+++.+...+|. ..+|+.+.|.+
T Consensus 138 ~~i~l~~-~i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~--~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 138 AKVVLNE-GLKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFY--YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp SEEECCT-TCCEECTTTTTTCCCCEEECCT-TCCEECSSTTT--TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred cEEEeCC-CccEECHHhcCCCCceEEEeCC-CccEehHHHhh--CcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence 3455433 366666432 23788999875 78889989998 789999999999999999999998 58899999984
Q ss_pred CCCCCCCcccccCCCCCcEEEeeCccccccCcCcCCCCCCccEEEccCccccccCHHHhhcCcccccccccccccc----
Q psy10487 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK---- 190 (610)
Q Consensus 115 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---- 190 (610)
.+..+...+|.++.+|+.|.|..| ++.+...+|.+ .+|+.+.| .+.++.+...+|.++.+|+.+++.+|.+.
T Consensus 213 -~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~ 288 (401)
T 4fdw_A 213 -TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE 288 (401)
T ss_dssp -TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred -chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence 488999999999999999999875 78888888988 78999999 56788888889999999999999888765
Q ss_pred -ccCcccccCCCcccEEecCCC
Q psy10487 191 -HLSESVFFPTPNLKTLSLDGN 211 (610)
Q Consensus 191 -~~~~~~~~~~~~L~~l~l~~N 211 (610)
.+....|..+.+|+.+.+..+
T Consensus 289 ~~I~~~aF~~c~~L~~l~l~~~ 310 (401)
T 4fdw_A 289 AMIHPYCLEGCPKLARFEIPES 310 (401)
T ss_dssp CEECTTTTTTCTTCCEECCCTT
T ss_pred cEECHHHhhCCccCCeEEeCCc
Confidence 678888999999999988743
No 452
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.12 E-value=8.4e-12 Score=117.67 Aligned_cols=125 Identities=16% Similarity=0.245 Sum_probs=83.0
Q ss_pred CCCCCCCCCCCCccCCCc-ccccccccccCCCceeeeecceEeecCceEEEEEEE-EecCCCeEEEEeCCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKH-WDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~-~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~ 308 (610)
.+.+.|+|.+.+..+... ...+.. .+..+|.+........+.+|+.++|.|.+ .|.|.|.+.|++++..+.......
T Consensus 78 ~d~G~Y~C~~~~~~g~~~~~~~~~l-~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~ 156 (209)
T 1nbq_A 78 EDTGTYTCMVSEEGGNSYGEVKVKL-IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST 156 (209)
T ss_dssp TSCSEEEEEEEETTSSCEECCEEEC-CEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSS
T ss_pred HHCcEEEEEEecCCCCccceEEEEE-EEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccc
Confidence 467789998766533111 111111 22345655555555678899999999997 899999999999998877654321
Q ss_pred eeeccCCcee-eeeeEEEEEecCCCCCeEEEEEeecCCccee--EEEEEEc
Q psy10487 309 LEEEEGDALF-EKSVSITLFNVTDLDAGEYTCYAENIRGNAS--GEISLDL 356 (610)
Q Consensus 309 ~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~--~~~~L~V 356 (610)
.......... ...+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 157 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 157 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp SSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred eeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 1111110000 1235899999999999999999999999984 4444444
No 453
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.12 E-value=6.7e-10 Score=107.20 Aligned_cols=182 Identities=13% Similarity=0.103 Sum_probs=94.2
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EE---ec-cCCcc-ceeec--cCCceee-----eeeEEEEEec
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QV---LH-NSSFD-LLEEE--EGDALFE-----KSVSITLFNV 329 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~---l~-~~~~~-~~~~~--~~~~~~~-----~~~~L~I~~v 329 (610)
.+..+.+.+|++++|.|.+.+.+ .+.+.|+|.. .. +. ..... ..... .++..+. ....|+|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (232)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 45667889999999999999875 6889999842 21 10 00000 00000 1111111 1348999999
Q ss_pred CCCCCeEEEEEee--cCCcc----eeEEEEEEcCc-ccccccccc-CCcceeehhhhHHHHHHHHHhheeEEEEEEeeec
Q psy10487 330 TDLDAGEYTCYAE--NIRGN----ASGEISLDLPE-INLATTLSK-TDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH 401 (610)
Q Consensus 330 ~~~D~G~Y~C~a~--N~~G~----~~~~~~L~V~~-~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (610)
+.+|+|.|.|.+. |..|. ....+.|.|.. ...+|.+.. .+..... .+...+...|...+.
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~------------~g~~~v~L~C~~~g~ 153 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSP------------SDTSSVAVGCLAQDF 153 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------------------CCSEEEEEEEEEE
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccC------------CCCCcEEEEEEEEEE
Confidence 9999999999998 43122 22345777754 122232221 1110000 110011223333322
Q ss_pred ---c-cccccc-cCCcccccc---------ccccccceeeeeeee--ccCcceeeeecCCCcceeeeeeccccc
Q psy10487 402 ---K-NKRRKR-KGKMKQSVS---------FNDQEKKLLDVSITT--TDRHTGSCEALGSQPDMELIEQSLAME 459 (610)
Q Consensus 402 ---~-~~~~~~-~~~~~~~~~---------~~~~~~~L~i~~v~~--~D~G~Y~C~A~N~~G~~~~~~~l~v~~ 459 (610)
+ ...|.+ .+..-.... .......|.|..... +|.|.|+|.|.|..|.......+.+.+
T Consensus 154 ~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~ 227 (232)
T 1dn0_B 154 LPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA 227 (232)
T ss_dssp BSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred eCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence 2 223333 111100000 001123577777776 789999999999999877766665543
No 454
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=2.5e-12 Score=133.42 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=117.5
Q ss_pred cCCCccEEEeecCCCCCCChhhhccc---CCCCccEEEcccCCCcccchhhh-cCCCCCcEEEccCCCCCCCCcccc---
Q psy10487 53 LDSDIQVLDLNNNKISYLTKEAFKSI---GLLNLQRIYLKNSGIREVHRDTF-KYLTILVEVDLSDNQIAWLHQDTF--- 125 (610)
Q Consensus 53 l~~~L~~L~L~~n~i~~l~~~~~~~~---~l~~L~~L~L~~n~l~~i~~~~f-~~l~~L~~LdLs~n~l~~l~~~~f--- 125 (610)
+...++.|+|++|.|+......+..+ ...+|+.|+|++|.|.......+ ..+.+|++|+|++|+|.......+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 34578999999999887655554421 23689999999999876443333 345688999999999876554444
Q ss_pred --cCCCCCcEEEeeCccccccCcC----cCCCCCCccEEEccCccccccC----HHHhhcCccccccccccccccccCc-
Q psy10487 126 --LGNDRLKVLYLNGNPITELRAG----QFPKLPYLKTIELQHCQIHSVH----KDALIHLTALESLNLNGNRLKHLSE- 194 (610)
Q Consensus 126 --~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~- 194 (610)
....+|+.|+|++|.++..... .+..+++|+.|+|++|.|.... ...+....+|+.|+|++|.|+....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3467899999999998764322 2356788999999999987654 3345667789999999998876433
Q ss_pred ---ccccCCCcccEEecCCCccc
Q psy10487 195 ---SVFFPTPNLKTLSLDGNPWC 214 (610)
Q Consensus 195 ---~~~~~~~~L~~l~l~~N~~~ 214 (610)
..+...+.|+.|++++|.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 23345678999999999864
No 455
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=99.11 E-value=1.2e-10 Score=100.67 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=68.0
Q ss_pred eeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCcee----eeeeEEEEEecCCCCCeEEEE
Q psy10487 264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF----EKSVSITLFNVTDLDAGEYTC 339 (610)
Q Consensus 264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C 339 (610)
...+..+.+.+|++++|.|.+.|.|.|.+.|++++..+...... .....+.... ...++|.|.+++.+|+|.|+|
T Consensus 5 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 83 (124)
T 3rbg_A 5 TNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEY-PVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKC 83 (124)
T ss_dssp CCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTE-ECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred cCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEecc-ccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEE
Confidence 34567788999999999999999999999999865533210000 0000011011 114689999999999999999
Q ss_pred EeecCCcceeEEEEEEcCcc
Q psy10487 340 YAENIRGNASGEISLDLPEI 359 (610)
Q Consensus 340 ~a~N~~G~~~~~~~L~V~~~ 359 (610)
.|.|. |.....+.|.|...
T Consensus 84 ~a~n~-g~~~~~~~l~V~~~ 102 (124)
T 3rbg_A 84 LHYSD-SVSTKEVKVIVLAT 102 (124)
T ss_dssp EEESS-SEEEEEEEEEEECC
T ss_pred EEEcC-CCCcEEEEEEEEeC
Confidence 99999 99999999988543
No 456
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=103.88 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=67.9
Q ss_pred eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceee----eeeEEEEEecCCCCCeEEE
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE----KSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~ 338 (610)
+...+..+.+.+|++++|.|.+.+.|.+.+.|++.+......... .....++.... ....|.|.+++.+|+|.|+
T Consensus 41 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~-~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~ 119 (145)
T 1z9m_A 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEK-RALRDNRIQLVTSTPHELSISISNVALADEGEYT 119 (145)
T ss_dssp TCCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTE-ECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEE
T ss_pred eecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCc-eecccCCEEEecCCCCeEEEEECCCChhhCEEEE
Confidence 345667889999999999999999999999999533211100000 00001110111 1468999999999999999
Q ss_pred EEeecCCcceeEEEEEEcCcccc
Q psy10487 339 CYAENIRGNASGEISLDLPEINL 361 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V~~~~~ 361 (610)
|.|.|. |.....+.|.|...+.
T Consensus 120 C~~~n~-~~~~~~~~L~V~~~P~ 141 (145)
T 1z9m_A 120 CSIFTM-PVRTAKSLVTVLGIPQ 141 (145)
T ss_dssp EEECSS-SCEEEEEEEEEECCCC
T ss_pred EEEEcC-CCceEEEEEEEEeCCC
Confidence 999999 9888999999855433
No 457
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.10 E-value=4.7e-11 Score=112.63 Aligned_cols=116 Identities=19% Similarity=0.228 Sum_probs=81.5
Q ss_pred CCCCCCCCCCCCccCCCccccccccccc--CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA--CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~--c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~ 308 (610)
.+.+.|+|.+.+...+.....+...... ..|.+...... +.+|+.+.|.|.+.|.| |.+.|++++..+.......
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~ 157 (208)
T 3r4d_A 81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMT 157 (208)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEE
T ss_pred cCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeE
Confidence 4678899988765433322222222221 22444444333 88999999999999976 8999999999887554322
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee-EEEEEEcC
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS-GEISLDLP 357 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~ 357 (610)
.... .+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.
T Consensus 158 ~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~ 199 (208)
T 3r4d_A 158 LSQN--------NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199 (208)
T ss_dssp EETT--------TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred EcCC--------CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence 1111 14899999999999999999999999864 47788774
No 458
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.10 E-value=1.8e-10 Score=96.66 Aligned_cols=88 Identities=18% Similarity=0.361 Sum_probs=67.6
Q ss_pred cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEE
Q psy10487 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEY 337 (610)
Q Consensus 258 ~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 337 (610)
..+|.+...+..+.+.+|++++|.|.+.|. |.+.|++++..+....+..... ++ ....|.|.+++.+|+|.|
T Consensus 6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~-~~-----~~~~L~I~~v~~~D~G~Y 77 (108)
T 2dm7_A 6 SGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQ-DG-----TRCELQIHDLSVADAGEY 77 (108)
T ss_dssp CCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEE-ET-----TEEEEEESSCCTTTCSEE
T ss_pred CCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEe-cC-----CEEEEEECCCCcccCEEE
Confidence 357888888888999999999999999775 7899999998876544322221 11 123699999999999999
Q ss_pred EEEeecCCcceeEEEEEEcC
Q psy10487 338 TCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 338 ~C~a~N~~G~~~~~~~L~V~ 357 (610)
+|.|.| ....+.|.|.
T Consensus 78 ~C~a~n----~~~~~~l~V~ 93 (108)
T 2dm7_A 78 SCMCGQ----ERTSATLTVR 93 (108)
T ss_dssp EEEETT----EEEEEECEEE
T ss_pred EEEEcC----CEEEEEEEEe
Confidence 999955 5667777774
No 459
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.10 E-value=6.1e-11 Score=110.55 Aligned_cols=119 Identities=17% Similarity=0.306 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceee---eecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI---KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~---~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~ 307 (610)
.+.+.|+|.+.+..+... ..+... +..+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......
T Consensus 73 ~d~G~Y~C~~~n~~~~~~-~~~~l~-v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~ 150 (197)
T 3lcy_A 73 EDEGVYTCIATNEVGEVE-TSSKLL-LQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENI 150 (197)
T ss_dssp GGCEEEEEEEECSSCEEE-EEEEEE-EEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSE
T ss_pred cCCEEEEEEEECCCCcee-EEEEEE-EEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCce
Confidence 367789998865543221 111111 112333321 124556788999999999999999999999999988765432
Q ss_pred ceeeccCCceeeeeeEEEEEecCC-CCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487 308 LLEEEEGDALFEKSVSITLFNVTD-LDAGEYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
...... ..+.|.|.+++. +|+|.|+|.|.|..|.....+.|.|.
T Consensus 151 ~~~~~~------~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 195 (197)
T 3lcy_A 151 TIENTE------HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195 (197)
T ss_dssp EEEECS------SEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEcC------CEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence 222111 125899999995 89999999999999999999998884
No 460
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.10 E-value=7.7e-11 Score=113.95 Aligned_cols=129 Identities=22% Similarity=0.325 Sum_probs=85.6
Q ss_pred CCCCCCCCCCCCccCCCccccccccccc---CCCceee-eecceEeecCceEEEEEEEEecCCCeEEEEe----CCEEec
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA---CPPNVTI-KESMVIREAGGNVTMSCYVYGDPEPTILWLL----NGQVLH 302 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~---c~P~i~~-~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~----~g~~l~ 302 (610)
.+.+.|+|.+.+..+... ..+...... .+|.+.. .+....+.+|+.++|.|.+.|.|.|.+.|++ ++..+.
T Consensus 82 ~d~G~Y~C~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~ 160 (241)
T 3grw_A 82 SDRGNYTCVVENKFGSIR-QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 160 (241)
T ss_dssp GGCEEEEEEEEETTEEEE-EEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSC
T ss_pred ccCEEEEEEEeecCCceE-EEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccC
Confidence 356789998866443221 112221111 1233332 3467778899999999999999999999999 777765
Q ss_pred cCCccceeecc--CCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCccc
Q psy10487 303 NSSFDLLEEEE--GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEIN 360 (610)
Q Consensus 303 ~~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~ 360 (610)
........... ........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p 220 (241)
T 3grw_A 161 PDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR 220 (241)
T ss_dssp TTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred CCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence 54432211100 00011345689999999999999999999999999999999996543
No 461
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.10 E-value=3.2e-11 Score=115.55 Aligned_cols=132 Identities=23% Similarity=0.359 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCccCCCccccccccccc---CCCceee-eecceEeecCceEEEEEEEEecCCCeEEEEe----CCEEec
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFA---CPPNVTI-KESMVIREAGGNVTMSCYVYGDPEPTILWLL----NGQVLH 302 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~---c~P~i~~-~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~----~g~~l~ 302 (610)
.+.+.|+|.+.+..+... ..+...... .+|.+.. .+....+.+|+.++|.|.+.|.|.|.+.|++ +|..+.
T Consensus 86 ~d~G~Y~C~~~n~~~~~~-~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~ 164 (231)
T 3ojm_B 86 SDKGNYTCVVENEYGSIN-HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYG 164 (231)
T ss_dssp GGCEEEEEEEEETTEEEE-EEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBC
T ss_pred ccCEEEEEEEecccCccc-ccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCcccc
Confidence 367789998866543321 111111111 1233322 3467788999999999999999999999999 777765
Q ss_pred cCCcccee-eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcccccc
Q psy10487 303 NSSFDLLE-EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLAT 363 (610)
Q Consensus 303 ~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~p 363 (610)
........ ...........+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...+.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p 226 (231)
T 3ojm_B 165 PDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226 (231)
T ss_dssp TTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC---
T ss_pred CCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCC
Confidence 44332111 11110011223579999999999999999999999999999999996554443
No 462
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.10 E-value=5.7e-11 Score=112.38 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEec-CCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+.... ..+.... ..+|.+...+ ...+.+|+.++|.|.+.+. |.+.+.|+++|..+...
T Consensus 64 ~D~G~Y~C~a~n~~~s---~~~~l~V-~~~p~~~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~----- 133 (204)
T 3sgj_C 64 DDSGEYRCQTQLSTLS---DPVQLEV-HIGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF----- 133 (204)
T ss_dssp GGCEEEEEEETTSBCC---CCEEEEE-ECSSEEEECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----
T ss_pred cCCEEEEEEeCCCccc---ccEEEEE-ecCceEecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-----
Confidence 4678899988653221 1222211 2344444433 3678899999999999766 66899999999876432
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecC-CcceeEEEEEEcCccccccc
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI-RGNASGEISLDLPEINLATT 364 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~-~G~~~~~~~L~V~~~~~~p~ 364 (610)
...+.|.|.+++.+|+|.|+|.|.|. .+..+..+.|.|.+....|.
T Consensus 134 ---------~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~ 180 (204)
T 3sgj_C 134 ---------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180 (204)
T ss_dssp ---------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred ---------cCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCc
Confidence 12348999999999999999999994 45567788888865544433
No 463
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.10 E-value=5.1e-11 Score=110.31 Aligned_cols=103 Identities=12% Similarity=0.083 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcccee
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~ 310 (610)
.+.+.|.|.+.+..+... +... .+. .+....+.+|+.++|.|.+.|.|.|.+.|++++..+.
T Consensus 78 ~D~G~Y~C~~~~~~~~~~---l~V~------~~~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------- 139 (184)
T 2ny1_B 78 EDSDTYICEVEDQKEEVQ---LLVF------GLT-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------- 139 (184)
T ss_dssp GGCEEEEEEETTEEEEEE---EEEE------EEE-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE--------
T ss_pred HHCEEEEEEEEcCCCcEE---EEEE------Eec-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc--------
Confidence 467889998876543211 1111 111 2344577899999999999999999999999876542
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcc
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~ 359 (610)
...+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|...
T Consensus 140 --------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~ 180 (184)
T 2ny1_B 140 --------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF 180 (184)
T ss_dssp --------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred --------cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEec
Confidence 12348999999999999999999999999999999988543
No 464
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.09 E-value=3.9e-10 Score=107.42 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=58.4
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeEEEEeCC--EEe---c-cCCccce-eec--cCCceee-----eeeEEEEEec
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTILWLLNG--QVL---H-NSSFDLL-EEE--EGDALFE-----KSVSITLFNV 329 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g--~~l---~-~~~~~~~-~~~--~~~~~~~-----~~~~L~I~~v 329 (610)
.+..+.+.+|++++|.|.+.+.| .+.+.|+++. ... . ....... ... .++.... ....|+|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (215)
T 1c5d_H 6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL 85 (215)
T ss_dssp EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence 35677889999999999999875 5889999852 211 0 0000000 000 0111111 1348999999
Q ss_pred CCCCCeEEEEEeecCCcc---eeEEEEEEcC
Q psy10487 330 TDLDAGEYTCYAENIRGN---ASGEISLDLP 357 (610)
Q Consensus 330 ~~~D~G~Y~C~a~N~~G~---~~~~~~L~V~ 357 (610)
+.+|+|.|.|.+.|..|. ....+.|.|.
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~ 116 (215)
T 1c5d_H 86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVS 116 (215)
T ss_dssp CGGGCEEEEEEECCSSSCSCCBCCCEEEEEC
T ss_pred CcccCEEEEEEEecCCcccceEcCCEEEEec
Confidence 999999999999997532 2234677775
No 465
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.08 E-value=1.2e-10 Score=110.45 Aligned_cols=125 Identities=15% Similarity=0.243 Sum_probs=83.7
Q ss_pred CCCCCCCCCCCCccCCCccc--ccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCC-eEEEEeCCEEeccC-C
Q psy10487 231 LYSHPLSCTEPGMLQTKHWD--DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEP-TILWLLNGQVLHNS-S 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~--~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p-~v~W~~~g~~l~~~-~ 305 (610)
.+.+.|.|.+.+........ .+.......+|.+...+....+.+|+.++|.|.+.| .|.| .+.|+++|..+... .
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 160 (213)
T 3d9a_L 81 EDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 160 (213)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred hhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence 36788999987654321111 122222223677776554444557999999999998 6666 89999999988765 2
Q ss_pred ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEE
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 355 (610)
.........++.+...+.|.|.+++.+|+|.|+|.|.|..........+.
T Consensus 161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~ 210 (213)
T 3d9a_L 161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFN 210 (213)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEEE
T ss_pred ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEec
Confidence 21122222333445567999999999999999999999887754444443
No 466
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.08 E-value=4.4e-11 Score=112.14 Aligned_cols=110 Identities=14% Similarity=0.056 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCccCCCc-cccccccccc--CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc
Q psy10487 231 LYSHPLSCTEPGMLQTKH-WDDVKAQEFA--CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~-~~~v~~~~~~--c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~ 307 (610)
.+.+.|+|.+.+..+... ...+...... -+|.+...+ ...+.+|++++|.|.+.|.| |.+.|+|+|..+......
T Consensus 68 ~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~ 145 (196)
T 2d3v_A 68 HHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLD 145 (196)
T ss_dssp GGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEE
T ss_pred hHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccc
Confidence 467889999865432111 1112222111 245555443 35788999999999999999 999999999876532211
Q ss_pred ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc
Q psy10487 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG 346 (610)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 346 (610)
......+ ...+.|.|.+++.+|+|.|+|.|.|..+
T Consensus 146 ~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 146 SQLTPSG----QFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp CEECTTS----CEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred cccccCC----CceeEEEeeecCcccCeeEEEEEEccCC
Confidence 1111111 1236899999999999999999999876
No 467
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.06 E-value=1.5e-10 Score=108.53 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCCcc-CC-Cccccccccccc--CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCc
Q psy10487 231 LYSHPLSCTEPGML-QT-KHWDDVKAQEFA--CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF 306 (610)
Q Consensus 231 l~~~~~~C~a~~~l-~g-~~~~~v~~~~~~--c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~ 306 (610)
.+.+.|+|.+.+.. +. .....+...... -+|.+...+ ...+.+|++++|.|.+.|. .|.+.|+|+|..+.....
T Consensus 68 ~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~ 145 (198)
T 1ugn_A 68 EHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCL 145 (198)
T ss_dssp GGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEE
T ss_pred HHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccc
Confidence 46788999986654 21 111122222111 235554443 4678899999999999998 789999999987643322
Q ss_pred cceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-----eeEEEEEEc
Q psy10487 307 DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-----ASGEISLDL 356 (610)
Q Consensus 307 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-----~~~~~~L~V 356 (610)
.......+ ...+.|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|
T Consensus 146 ~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 196 (198)
T 1ugn_A 146 NSQPHARG----SSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLV 196 (198)
T ss_dssp EC----------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred cccccCCC----cceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEe
Confidence 11111111 12368999999999999999999998762 245666665
No 468
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.06 E-value=1.2e-10 Score=113.12 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCccCCCcc----ccccccccc--CCCceeee-ecceEeecCceEEEEEEEEecCCCeEEEEeCCEEecc
Q psy10487 231 LYSHPLSCTEPGMLQTKHW----DDVKAQEFA--CPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN 303 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~----~~v~~~~~~--c~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~ 303 (610)
.+.+.|.|.+.+......+ ..+...... -+|.+... +..+.+.+|+.++|.|.+.|.|.|.|.|++++..+..
T Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~ 179 (250)
T 2fbo_J 100 QDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFEN 179 (250)
T ss_dssp GGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSC
T ss_pred hhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccc
Confidence 4678899998765543221 122222222 13444443 3567778899999999999999999999999887754
Q ss_pred CCccc--ee-----------ecc--CCceeeeeeEEEEEecCCCCCeEEEEEeecCCc---ceeEEEEEEc
Q psy10487 304 SSFDL--LE-----------EEE--GDALFEKSVSITLFNVTDLDAGEYTCYAENIRG---NASGEISLDL 356 (610)
Q Consensus 304 ~~~~~--~~-----------~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G---~~~~~~~L~V 356 (610)
..... .. ... ........+.|.|.+++.+|+|.|+|.|.|.+| ....++.|.|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 180 YETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250 (250)
T ss_dssp SSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred cccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEEeC
Confidence 22110 00 000 000001225899999999999999999999555 5555666554
No 469
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.06 E-value=2e-10 Score=124.72 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=64.0
Q ss_pred CCceeee-ecceEeecCceEEEEEEEEecCC--CeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPE--PTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336 (610)
Q Consensus 260 ~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~--p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 336 (610)
+|.+... +....+.+|+.++|.|.+.|.++ ..|+|+++|..+...........+.++.+...+.|.|..+..+|.|.
T Consensus 296 ~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~ 375 (512)
T 1zvo_C 296 PLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTS 375 (512)
T ss_pred CCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCe
Confidence 3555443 33344668999999999998644 38999999988652211112222334455667889999999999999
Q ss_pred EEEEeecCCccee
Q psy10487 337 YTCYAENIRGNAS 349 (610)
Q Consensus 337 Y~C~a~N~~G~~~ 349 (610)
|+|.|.|..+...
T Consensus 376 y~C~a~n~~~~~~ 388 (512)
T 1zvo_C 376 VTCTLNHPSLPPQ 388 (512)
T ss_pred EEEEEEeCCCCCC
Confidence 9999999988653
No 470
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.06 E-value=9.4e-11 Score=111.17 Aligned_cols=122 Identities=12% Similarity=0.158 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCCccCC--Ccccccccccc---cCCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEecc
Q psy10487 231 LYSHPLSCTEPGMLQT--KHWDDVKAQEF---ACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHN 303 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g--~~~~~v~~~~~---~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~ 303 (610)
.+.+.|.|.+.+..+. .....+..... ..+|.+...+....+.+|+.++|.|.+.|. |+ +.|.|+++|..+..
T Consensus 80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 159 (213)
T 3mj8_L 80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ 159 (213)
T ss_dssp GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence 4678899988765441 11111111111 156777776666666689999999999986 44 39999999998865
Q ss_pred CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487 304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353 (610)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 353 (610)
......... .++.+...+.|+|.++..+|+|.|+|.|.|..|....++.
T Consensus 160 ~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 160 GVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp TEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred CcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 432211111 2234455678999999999999999999999987776654
No 471
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.05 E-value=4.8e-10 Score=106.83 Aligned_cols=121 Identities=14% Similarity=0.289 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC-CEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN-GQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~-g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+ .+.....+..... .+|..........+.+|+.++|.|.+.|.|.|.+.|+++ +..+.......
T Consensus 90 ~D~G~Y~C~~~~--~~~~~~~~~l~V~-~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~- 165 (222)
T 3sbw_C 90 QDAGVYRCMISY--GGADYKRITVKVN-APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTT- 165 (222)
T ss_dssp GGCEEEEEEEES--SSEEEEEEEEEEE-BCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEE-
T ss_pred ccCeEEEEEEEe--CCCceeEEEEEEE-CCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceE-
Confidence 367889998876 2322222222222 233222222223567899999999999999999999998 55554332111
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 358 (610)
.....++.+...+.| .++.+|.|.|+|.|.|..|....++.|.|.+
T Consensus 166 ~~~~~~~~~~~~~~l---~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 166 NSKREEKLFNVTSTL---RINTTTNEIFYCTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp ECC----CEEEEEEE---EEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred EEcCCCCCEEEEEEE---EEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence 111122122222333 4457899999999999999999999999853
No 472
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.05 E-value=3.5e-10 Score=104.97 Aligned_cols=119 Identities=22% Similarity=0.331 Sum_probs=81.3
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEEeccCCcc-
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQVLHNSSFD- 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~l~~~~~~- 307 (610)
.+.+.|.|.+.+..+... ..+... +..+|.+.. .....+.+|+.++|.|.+.|.|.|.+.|+++ +..+......
T Consensus 68 ~d~G~Y~C~~~~~~~~~~-~~~~l~-V~~~p~~~~-~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~ 144 (192)
T 2va4_A 68 SDGGPYVCRATNKAGEDE-KQAFLQ-VFVQPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSL 144 (192)
T ss_dssp GGCEEEEEEEEETTEEEE-EEEEEE-EEEEEEEEE-ECCEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCT
T ss_pred hcCcEEEEEEEccccccc-eEEEEE-EEccCcccc-cCcceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeecccccc
Confidence 367789998866543221 122111 123455443 3345677799999999999999999999998 5555432210
Q ss_pred --ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEc
Q psy10487 308 --LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356 (610)
Q Consensus 308 --~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 356 (610)
....... ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 145 ~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 191 (192)
T 2va4_A 145 DGRIEVKGQ----HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191 (192)
T ss_dssp TSCEEEEEE----TTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred CCcEEEeec----cCceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEe
Confidence 0000000 11358999999999999999999999999999999887
No 473
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.05 E-value=1.8e-10 Score=105.83 Aligned_cols=109 Identities=16% Similarity=0.240 Sum_probs=77.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+..... .+..... .+.+........+.+|+.++|.|.+. +.|.|.+.|+++|..+....
T Consensus 61 ~d~G~Y~C~~~~~~~s~---~~~l~V~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---- 131 (176)
T 1f2q_A 61 EDSGEYKCQHQQVNESE---PVYLEVF--SDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY---- 131 (176)
T ss_dssp GGCEEEEEECTTSSCCC---CEEEEEE--CSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----
T ss_pred ecCEEEEEEcCCccccc---cEEEEEe--CcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec----
Confidence 46788999987643221 1222221 34444445556788999999999994 67778999999998874321
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-eeEEEEEEcCc
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLDLPE 358 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~ 358 (610)
..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus 132 ----------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 171 (176)
T 1f2q_A 132 ----------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK 171 (176)
T ss_dssp ----------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ----------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEec
Confidence 1248999999999999999999997554 55668888743
No 474
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.05 E-value=1.6e-10 Score=110.79 Aligned_cols=120 Identities=14% Similarity=0.101 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|.|.+.+..+... ..+ .+..++.+........+.+|+.+.|.|.+.| .|.|+|+|++++..+........
T Consensus 93 ~D~G~Y~C~a~n~~~~~~-~~v---~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~ 168 (226)
T 4f80_A 93 SDSGKYLCYFQDGDFYEK-ALV---ELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV 168 (226)
T ss_dssp GGCEEEEEEEEETTEEEE-EEE---EEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCC
T ss_pred HHCeeEEEEEECCCcEEE-EEE---EEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEE
Confidence 467889998876443221 111 1112333334445667788999999999998 59999999996554433222222
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCc
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 358 (610)
... .++.+ ..+.+..++.+|+|.|+|+|.|..|...+++.|.|.+
T Consensus 169 ~~~-~~g~~---~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 169 VAD-GVGLY---AVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp EEC-TTSCE---EEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred EEC-CCCcE---EEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence 221 21111 2344556788999999999999999999999998865
No 475
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.04 E-value=7.6e-11 Score=114.48 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=50.7
Q ss_pred eecceEeecCceEEEEEEEEecCC----CeEEEEeC--CEE---ec-cC------Cccceeec---cCCcee-----eee
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDPE----PTILWLLN--GQV---LH-NS------SFDLLEEE---EGDALF-----EKS 321 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P~----p~v~W~~~--g~~---l~-~~------~~~~~~~~---~~~~~~-----~~~ 321 (610)
.+..+.+.+|++++|.|.+.+.+. ..+.|++. +.. +. .. ........ .++... ...
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 85 (239)
T 3tv3_H 6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL 85 (239)
T ss_dssp EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence 456778999999999999998764 48999983 211 10 00 00000000 011111 112
Q ss_pred eEEEEEecCCCCCeEEEEEeecCC
Q psy10487 322 VSITLFNVTDLDAGEYTCYAENIR 345 (610)
Q Consensus 322 ~~L~I~~v~~~D~G~Y~C~a~N~~ 345 (610)
..|.|.+++.+|+|.|.|.+.+..
T Consensus 86 ~~L~I~~v~~~DsG~Y~C~~~~~~ 109 (239)
T 3tv3_H 86 VFLKLNSVTAADTATYYCARFGGE 109 (239)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEEE
T ss_pred EEEEECCCChhhCEEEEEEEecCc
Confidence 469999999999999999998764
No 476
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.04 E-value=2.4e-10 Score=104.93 Aligned_cols=108 Identities=14% Similarity=0.180 Sum_probs=77.0
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCCC-eEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p-~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+.... ..+..... .+.....+....+.+|+.++|.|.+.|.|++ .+.|+++|..+...
T Consensus 64 ~d~G~Y~C~~~n~~~s---~~~~l~V~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~----- 133 (175)
T 1fnl_A 64 NDSGEYRCQTNLSTLS---DPVQLEVH--IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF----- 133 (175)
T ss_dssp GGCEEEEEECSSSCCC---CCEEEEEE--CSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----
T ss_pred ccCEEEEEEeeCCccc---ccEEEEEe--CCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-----
Confidence 3678899998763321 12222222 2223334455678899999999999988765 99999999887432
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-eeEEEEEEcC
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLDLP 357 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~ 357 (610)
...+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus 134 ---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 173 (175)
T 1fnl_A 134 ---------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173 (175)
T ss_dssp ---------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred ---------CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence 12358999999999999999999997764 5567777773
No 477
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.03 E-value=8.7e-11 Score=108.32 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCCccCCC-ccccccccccc--CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc
Q psy10487 231 LYSHPLSCTEPGMLQTK-HWDDVKAQEFA--CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~-~~~~v~~~~~~--c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~ 307 (610)
.+.+.|.|.+.+..+.. ....+...... -.|.+. ..+..++|.|.+.|.|.|.|.|+++|..+....
T Consensus 71 ~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~-- 140 (176)
T 1hng_A 71 DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-- 140 (176)
T ss_dssp GGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEES--
T ss_pred ccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCC--
Confidence 47788999987655432 11112221111 112222 235569999999999999999999998876543
Q ss_pred ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcC
Q psy10487 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP 357 (610)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 357 (610)
.+.|.+++.+|+|.|+|.|.|.+|..++.+.|.++
T Consensus 141 ---------------~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~~ 175 (176)
T 1hng_A 141 ---------------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 175 (176)
T ss_dssp ---------------SSEEEEECSCCSSCEEEEEEETTEEEEEEECCCCC
T ss_pred ---------------cEEEEEEEccCCeEEEEEEEecCCCceecccccCC
Confidence 24566888999999999999999999988877663
No 478
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.02 E-value=8.3e-11 Score=113.49 Aligned_cols=179 Identities=9% Similarity=0.070 Sum_probs=91.5
Q ss_pred eecceEeecCceEEEEEEEEecC--CCeE--EEEeCC--EE---ec----cCC--c-cceeeccCCceee-----eeeEE
Q psy10487 266 KESMVIREAGGNVTMSCYVYGDP--EPTI--LWLLNG--QV---LH----NSS--F-DLLEEEEGDALFE-----KSVSI 324 (610)
Q Consensus 266 ~~~~~~v~~G~~v~l~C~~~g~P--~p~v--~W~~~g--~~---l~----~~~--~-~~~~~~~~~~~~~-----~~~~L 324 (610)
.+..+.+.+|++++|.|.+.+.+ .+.+ .|++.. .. +. ... . .......++.... ....|
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 85 (232)
T 3qhz_H 6 ESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVL 85 (232)
T ss_dssp EECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEE
T ss_pred cCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEE
Confidence 34557789999999999998743 2445 999832 11 10 000 0 0000000111111 12479
Q ss_pred EEEecCCCCCeEEEEEeecCC--------cceeEEEEEEcCc-cccccccc-cCCcceeehhhhHHHHHHHHHhheeEEE
Q psy10487 325 TLFNVTDLDAGEYTCYAENIR--------GNASGEISLDLPE-INLATTLS-KTDSWYMLVLGISVCVVSVIVSIGMSFC 394 (610)
Q Consensus 325 ~I~~v~~~D~G~Y~C~a~N~~--------G~~~~~~~L~V~~-~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (610)
.|.+++.+|+|.|.|.+.|.. ......+.|.|.. ....|.+. ..+...... +. .+..
T Consensus 86 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~------------g~-~v~L 152 (232)
T 3qhz_H 86 TMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTS------------GG-TAAL 152 (232)
T ss_dssp EECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------------------C-EEEE
T ss_pred EECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccC------------CC-cEEE
Confidence 999999999999999999874 2223345566642 22333332 111111011 11 1133
Q ss_pred EEEeeec-c-c--ccccccCCccccc---cccccc------cceeeeeeeeccCcceeeeecCCCcceeeeeecccc
Q psy10487 395 VCRAHEH-K-N--KRRKRKGKMKQSV---SFNDQE------KKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAM 458 (610)
Q Consensus 395 ~~~~~~~-~-~--~~~~~~~~~~~~~---~~~~~~------~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 458 (610)
.|...+. + . ..|.+.+...... .....+ ..|.+......| |.|+|.|.|..+.......+.+.
T Consensus 153 ~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~ 228 (232)
T 3qhz_H 153 GCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 228 (232)
T ss_dssp EEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence 4443332 2 1 1243322110000 011111 246666666678 99999999999887777666554
No 479
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.01 E-value=3.8e-10 Score=106.79 Aligned_cols=119 Identities=13% Similarity=0.216 Sum_probs=78.7
Q ss_pred CCCCCCCCCCCCccCCCccc--ccccccccCCCceeeeecceEeecCceEEEEEEEEec-CCC-eEEEEeCCEEeccC-C
Q psy10487 231 LYSHPLSCTEPGMLQTKHWD--DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNS-S 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~--~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~-~ 305 (610)
.+.+.|.|.+.+........ .+.......+|.+...+....+.+|+.++|.|.+.|. |.| .|.|+++|..+... .
T Consensus 80 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 159 (210)
T 1lk3_L 80 DDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVL 159 (210)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEE
T ss_pred HHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCce
Confidence 36788999887654321111 1222222235777765544444589999999999984 554 89999999988655 1
Q ss_pred ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCccee
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 349 (610)
.........++.+...+.|.|.++..+|+|.|+|.|.|......
T Consensus 160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 203 (210)
T 1lk3_L 160 DSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSP 203 (210)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred EccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCe
Confidence 11112222333445667999999999999999999999876543
No 480
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.01 E-value=1.4e-10 Score=115.47 Aligned_cols=211 Identities=15% Similarity=0.158 Sum_probs=69.6
Q ss_pred CCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEec-CCC--eEEEEeCCEEeccCCcccee
Q psy10487 234 HPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEP--TILWLLNGQVLHNSSFDLLE 310 (610)
Q Consensus 234 ~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~p--~v~W~~~g~~l~~~~~~~~~ 310 (610)
+.|.|.+... +......+....+.-|-.+.+.+....+.+|+.++|.|.+.|. |.. +|+|+|++..+......
T Consensus 61 ~~y~C~~~~~-~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~--- 136 (291)
T 1mq8_A 61 SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--- 136 (291)
T ss_dssp CCCEEEEECS-SCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC---
T ss_pred CeEEEEEEcC-CccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC---
Confidence 3588886421 1222233344444334344444444568899999999999875 443 58999999887643310
Q ss_pred eccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc--------eeEEEEEEcCccccc-cccccCCcceeehhhhHHH
Q psy10487 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN--------ASGEISLDLPEINLA-TTLSKTDSWYMLVLGISVC 381 (610)
Q Consensus 311 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~--------~~~~~~L~V~~~~~~-p~~~~~~~~~~~~~~~~~~ 381 (610)
.. .....|.+.....+|.+.|+|+|.|..+. .+....|.|...+.. +.+. .+. .+..+....
T Consensus 137 --~~----~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~-~p~--~l~eG~~v~ 207 (291)
T 1mq8_A 137 --GE----PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV-SPR--VLEVDTQGT 207 (291)
T ss_dssp --BT----TEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------
T ss_pred --CC----CceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceec-CCc--CccCCCeEE
Confidence 11 12346666666666667999999998663 244566666433221 1221 121 334445555
Q ss_pred HHHHHHhheeE--EEEEEeeecccccccccCCccccccccccccceeeeee---eecc--CcceeeeecCCCcceeeeee
Q psy10487 382 VVSVIVSIGMS--FCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSI---TTTD--RHTGSCEALGSQPDMELIEQ 454 (610)
Q Consensus 382 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v---~~~D--~G~Y~C~A~N~~G~~~~~~~ 454 (610)
+.|.+-+.+.. ..++|.++...... .. ...+..+.+... ..+| .+.|+|.|.|.....+....
T Consensus 208 l~C~~~g~~P~~~~~v~w~~~g~~l~~--------~~--~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 277 (291)
T 1mq8_A 208 VVCSLDGLFPVSEAQVHLALGDQRLNP--------TV--TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 277 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEcCCCCCCcccEEEEEECCEecCc--------ee--eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEE
Confidence 56665554322 12333322221110 00 011122333222 3434 66777999887666788888
Q ss_pred cccccCCCcceeE
Q psy10487 455 SLAMEQPPVHITI 467 (610)
Q Consensus 455 l~v~~~pp~~i~i 467 (610)
|.|++.|+-.+++
T Consensus 278 l~v~~~~~~~~~~ 290 (291)
T 1mq8_A 278 VTIYSFPAPNVIL 290 (291)
T ss_dssp -------------
T ss_pred EEEEcCCCccEEe
Confidence 8888766555443
No 481
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.00 E-value=2.7e-10 Score=106.66 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCCccC-CCccccccccc--ccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc
Q psy10487 231 LYSHPLSCTEPGMLQ-TKHWDDVKAQE--FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~-g~~~~~v~~~~--~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~ 307 (610)
.+.+.|+|.+.+..+ ......+.... ..-+|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+|+|..+......
T Consensus 68 ~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~ 145 (196)
T 3p2t_A 68 DYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLR 145 (196)
T ss_dssp GGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEE
T ss_pred ccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeec
Confidence 467889999876554 12222222222 1234666655543 67899999999999984 5689999999876543221
Q ss_pred ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCc-----ceeEEEEEEc
Q psy10487 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG-----NASGEISLDL 356 (610)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-----~~~~~~~L~V 356 (610)
.... .....+.|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|
T Consensus 146 ~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 146 SEHG-----AQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp EEEE-----EEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred cccc-----ccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 1100 012346899999999999999999999987 2344566665
No 482
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.00 E-value=4.1e-10 Score=106.64 Aligned_cols=122 Identities=11% Similarity=0.088 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCccCCCccc--ccccc-cccCCCceeeeecceEeecCceEEEEEEEEecCCC--eEEEEeCCEEeccCC
Q psy10487 231 LYSHPLSCTEPGMLQTKHWD--DVKAQ-EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSS 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~--~v~~~-~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p--~v~W~~~g~~l~~~~ 305 (610)
.+.+.|.|.+.+........ .+... ....+|.+...+....+.+|+.++|.|.+.|.+++ .|.|+++|..+....
T Consensus 83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~ 162 (212)
T 1q0x_L 83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGM 162 (212)
T ss_dssp GGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred cCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCe
Confidence 36788999886644211101 11111 11246777765544445578999999999986544 899999999886553
Q ss_pred ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEE
Q psy10487 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352 (610)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 352 (610)
.........++.+...+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus 163 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 163 ETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp EECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred ecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence 22222223333445567899999999999999999999887655444
No 483
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=98.99 E-value=1.8e-10 Score=108.32 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCccCCCcccccccccc--cCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEF--ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL 308 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~--~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~ 308 (610)
.+.+.|.|.+.+..+.. ...+..... .-.|.+. ...+.+|+.+.|.|.+.|.|.|.+.|++++..+....
T Consensus 77 ~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~p~~~----~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~--- 148 (202)
T 3bp6_B 77 RDSGQYRCLVICGAAWD-YKYLTVKVKASYMRIDTR----ILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSH--- 148 (202)
T ss_dssp GGCEEEEEEEEETTEEE-EEEEEEEEEBCCCCEEEE----EEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEEE---
T ss_pred HHCcEEEEEEEeCCCcc-eEEEEEEecCCCCcccEE----EEecCCCCeEEEEEEccccCCceEEEEeCCCCccCce---
Confidence 46788999886544321 111211111 1112221 1245689999999999999999999999877543211
Q ss_pred eeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEEcCcc
Q psy10487 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359 (610)
Q Consensus 309 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~ 359 (610)
.....+ ....+.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.
T Consensus 149 ~~~~~~-----~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~~ 194 (202)
T 3bp6_B 149 IRTPEG-----LYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSR 194 (202)
T ss_dssp EECTTS-----CEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC---
T ss_pred eeCCCC-----CEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecCc
Confidence 111111 1236778899999999999999999999999999888543
No 484
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=98.99 E-value=6.6e-11 Score=114.92 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=58.0
Q ss_pred CCCceeeee-cceE-eecCceEEEEEEEEecC----CCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCC
Q psy10487 259 CPPNVTIKE-SMVI-REAGGNVTMSCYVYGDP----EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332 (610)
Q Consensus 259 c~P~i~~~~-~~~~-v~~G~~v~l~C~~~g~P----~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 332 (610)
++|.+.+.+ .... +..|+.++|.|.+.|.+ ..+|+|+++|..+....... .....++.+...+.|.|.....+
T Consensus 21 ~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~ 99 (240)
T 4acp_A 21 GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP-REEQYNSTYRVVSVLTVLHQDWL 99 (240)
T ss_dssp --CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC-CEEC---CEEEEEEEECCHHHHH
T ss_pred CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc-ceECCCCeEEEEEEEEEechhcc
Confidence 456665544 4444 55699999999999974 23799999999886532111 11122334556678999888888
Q ss_pred CCeEEEEEeecCCcce
Q psy10487 333 DAGEYTCYAENIRGNA 348 (610)
Q Consensus 333 D~G~Y~C~a~N~~G~~ 348 (610)
|.|.|+|+|.|..+..
T Consensus 100 d~~~YtC~v~h~~~~~ 115 (240)
T 4acp_A 100 NGKEYKCKVSNKALPA 115 (240)
T ss_dssp HTCCEEEEEECC----
T ss_pred CCCEEEEEEEcCCCCc
Confidence 8999999999998753
No 485
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=98.99 E-value=3.5e-10 Score=105.16 Aligned_cols=61 Identities=23% Similarity=0.429 Sum_probs=52.7
Q ss_pred eecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce
Q psy10487 272 REAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348 (610)
Q Consensus 272 v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 348 (610)
+.+|++++|.|.+ |.|.|.|+|+|..+..... ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred cCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 4489999999998 8999999999998864331 22489999999999999999999999976
No 486
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=98.99 E-value=6.2e-10 Score=105.84 Aligned_cols=125 Identities=13% Similarity=0.168 Sum_probs=81.1
Q ss_pred CCCCCCCCCCCCccCCCc---ccccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCC-eEEEEeCCEEeccC-
Q psy10487 231 LYSHPLSCTEPGMLQTKH---WDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEP-TILWLLNGQVLHNS- 304 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~---~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p-~v~W~~~g~~l~~~- 304 (610)
.+.+.|.|.+.+...... ...+.......+|.+...+....+.+|+.++|.|.+.| .|.| .|.|+++|..+...
T Consensus 82 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~ 161 (216)
T 2xzc_L 82 GDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS 161 (216)
T ss_dssp GGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSE
T ss_pred ccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCe
Confidence 367889998876543000 11122222224677766444333446889999999998 4555 89999999988654
Q ss_pred CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEEEE
Q psy10487 305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355 (610)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 355 (610)
..........++.+...+.|.|..+..+|+|.|+|.|.|..........+.
T Consensus 162 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i~ 212 (216)
T 2xzc_L 162 QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 212 (216)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEEE
T ss_pred eEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEecc
Confidence 111112222333445567899999999999999999999886655444443
No 487
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=98.99 E-value=2.7e-09 Score=101.02 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=52.8
Q ss_pred eeeeecceEeecCceEEEEEEEEecCCCeEEEEeCC--E---EeccCCccceeeccCCcee------eeeeEEEEEecCC
Q psy10487 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--Q---VLHNSSFDLLEEEEGDALF------EKSVSITLFNVTD 331 (610)
Q Consensus 263 i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g--~---~l~~~~~~~~~~~~~~~~~------~~~~~L~I~~v~~ 331 (610)
+...+..+.+.+|++++|.|.+.+.+ +.+.|+|.. . .+..... .....++... .....|+|.+++.
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~--~~~~~~R~~~~~~~~~~~~~~L~I~~v~~ 80 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLAS--GTKENGRLKSAFDSKERRYSTLHIRDAQL 80 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESS--EEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEcc--CCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence 34456778899999999999998754 589999842 1 1110000 0000111111 1235899999999
Q ss_pred CCCeEEEEEeecCC
Q psy10487 332 LDAGEYTCYAENIR 345 (610)
Q Consensus 332 ~D~G~Y~C~a~N~~ 345 (610)
+|+|.|.|.+.+..
T Consensus 81 ~D~G~Y~C~~~~~~ 94 (207)
T 1ypz_E 81 EDSGTYFCAADTWH 94 (207)
T ss_dssp GGCEEEEEEEECBC
T ss_pred HHCEEEEEEEecCC
Confidence 99999999999874
No 488
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=98.98 E-value=6.7e-10 Score=120.53 Aligned_cols=76 Identities=21% Similarity=0.427 Sum_probs=51.9
Q ss_pred cCceEEEEEEEEec-CCC-eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEE
Q psy10487 274 AGGNVTMSCYVYGD-PEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE 351 (610)
Q Consensus 274 ~G~~v~l~C~~~g~-P~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 351 (610)
.|+.++|.|.+.|. |.| .|+|++++........... ...++.+...+.|.|..+... .|.|+|.|.|..|.....
T Consensus 149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~--~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~ 225 (512)
T 1zvo_C 149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEI--QRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKE 225 (512)
T ss_pred CCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCce--ecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEE
Confidence 46899999999987 776 8999997543211111011 111223345568999888777 999999999999876554
Q ss_pred E
Q psy10487 352 I 352 (610)
Q Consensus 352 ~ 352 (610)
+
T Consensus 226 ~ 226 (512)
T 1zvo_C 226 I 226 (512)
T ss_pred E
Confidence 4
No 489
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=98.98 E-value=1.3e-09 Score=119.47 Aligned_cols=92 Identities=22% Similarity=0.316 Sum_probs=80.2
Q ss_pred CCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEE
Q psy10487 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338 (610)
Q Consensus 259 c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 338 (610)
..|.+...+....+.+|+++.|.|.+.|.|.|+|+|++++.++..+.+.....+++ ...|.|.++..+|+|.|+
T Consensus 481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~------~~~L~I~~~~~~D~G~Yt 554 (573)
T 3uto_A 481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGN------DYGLTINRVKGDDKGEYT 554 (573)
T ss_dssp GSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETT------EEEEEECSCCGGGCEEEE
T ss_pred cCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCC------EEEEEEcCCCcccCcEEE
Confidence 35777777888899999999999999999999999999999998776654444333 238999999999999999
Q ss_pred EEeecCCcceeEEEEEEc
Q psy10487 339 CYAENIRGNASGEISLDL 356 (610)
Q Consensus 339 C~a~N~~G~~~~~~~L~V 356 (610)
|+|.|..|..++.+.|+|
T Consensus 555 ~~A~N~~G~~~~~v~l~V 572 (573)
T 3uto_A 555 VRAKNSYGTKEEIVFLNV 572 (573)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEeCCCcEEEEEEEEE
Confidence 999999999999999988
No 490
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=98.97 E-value=2.1e-10 Score=108.63 Aligned_cols=123 Identities=10% Similarity=0.076 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCCccCC-Cccc--ccccc-cccCCCceeeeecceEeecCceEEEEEEEEecC--CCeEEEEeCCEEeccC
Q psy10487 231 LYSHPLSCTEPGMLQT-KHWD--DVKAQ-EFACPPNVTIKESMVIREAGGNVTMSCYVYGDP--EPTILWLLNGQVLHNS 304 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g-~~~~--~v~~~-~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P--~p~v~W~~~g~~l~~~ 304 (610)
.+.+.|.|.+.+.... .... .+... ....+|.+...+....+.+|+.++|.|.+.|.+ .+.+.|+++|..+...
T Consensus 78 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 157 (211)
T 3tv3_L 78 DDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAG 157 (211)
T ss_dssp GGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred hHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCC
Confidence 3678899988665431 1111 11111 112467777766555556899999999999863 5789999999988653
Q ss_pred CccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeEEEE
Q psy10487 305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353 (610)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 353 (610)
..........++.+...+.|.|..+..+|+|.|+|.|.|..|....++.
T Consensus 158 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 158 VETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp EEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred cccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 2222222223334455678999999999999999999999987766653
No 491
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=98.97 E-value=8.9e-11 Score=111.32 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCCccCCC-cc---cccccc-cccCCCceeeeecceEeecCceEEEEEEEEec-CC-CeEEEEeCCEEecc
Q psy10487 231 LYSHPLSCTEPGMLQTK-HW---DDVKAQ-EFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PE-PTILWLLNGQVLHN 303 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~-~~---~~v~~~-~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~-P~-p~v~W~~~g~~l~~ 303 (610)
.+.+.|.|.+.+...+. .. ..+... ....+|.+...+....+.+|+.++|.|.+.|. |+ |.|.|+++|..+..
T Consensus 79 ~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~ 158 (212)
T 1nfd_E 79 EDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATIND 158 (212)
T ss_dssp GGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred ccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCC
Confidence 46788999887421111 00 111111 11245766665544445689999999999987 55 79999999998876
Q ss_pred CCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcceeE
Q psy10487 304 SSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASG 350 (610)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 350 (610)
..........+++ +...+.|.|.+++.+|+|.|+|.|.|..+....
T Consensus 159 ~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (212)
T 1nfd_E 159 GVKTTKPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK 204 (212)
T ss_dssp SCBCCCCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred CeecCCceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence 5432222233333 455678999999999999999999999876433
No 492
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=98.97 E-value=5.3e-10 Score=101.77 Aligned_cols=107 Identities=12% Similarity=0.193 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEE-ecCCCeEEEEeCCEEeccCCccce
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLL 309 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~ 309 (610)
.+.+.|+|.+.+..... .+.... ..+|. ........+.+|+.+.|.|.+. +.|.+.+.|+++|..+....
T Consensus 61 ~d~G~Y~C~~~~~~~s~---~~~l~v-~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---- 131 (170)
T 3ry4_A 61 NDSGEYTCQTGQTSLSD---PVHLTV-LFEWL-VLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH---- 131 (170)
T ss_dssp GGCEEEEEEETTSBCCC---CEEEEE-ECCSE-EEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES----
T ss_pred ccCeEEEEEEeCCCceE---eEEEEE-ECCce-EecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC----
Confidence 46778999887533221 122111 12333 3334456778999999999994 56779999999998765322
Q ss_pred eeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-eeEEEEEEc
Q psy10487 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLDL 356 (610)
Q Consensus 310 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V 356 (610)
..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 132 ----------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 132 ----------LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp ----------SCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ----------CCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 1237999999999999999999999997 455677765
No 493
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=98.97 E-value=4.1e-10 Score=104.41 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCccCC-Cccc--ccccccccCCCceeeeecceEeecCceEEEEEEEEecCCCeEEEEeCCEEeccCCcc
Q psy10487 231 LYSHPLSCTEPGMLQT-KHWD--DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFD 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g-~~~~--~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~g~~l~~~~~~ 307 (610)
.+.+.|+|.+.+..+. .... .+......-+|.+...+ ...+.+|++++|.|.+.+.| +.+.|+|+|..+.....
T Consensus 62 ~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~- 138 (184)
T 2gi7_A 62 SLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNP- 138 (184)
T ss_dssp GGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCC-
T ss_pred hhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceec-
Confidence 4678899998764421 1111 12221112356666655 55778999999999987755 69999999987654211
Q ss_pred ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc-----eeEEEEEEc
Q psy10487 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-----ASGEISLDL 356 (610)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-----~~~~~~L~V 356 (610)
.....+.|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|
T Consensus 139 ---------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 183 (184)
T 2gi7_A 139 ---------ERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV 183 (184)
T ss_dssp ---------CEEEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred ---------CCCceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence 1133468999999999999999999998653 244555554
No 494
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=98.96 E-value=1.2e-09 Score=106.92 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=53.3
Q ss_pred eeeecceEeecCceEEEEEEEEecCCCeEEEEeC--CEE---ecc-CCccceeec--cC-CceeeeeeE--EEEEecCCC
Q psy10487 264 TIKESMVIREAGGNVTMSCYVYGDPEPTILWLLN--GQV---LHN-SSFDLLEEE--EG-DALFEKSVS--ITLFNVTDL 332 (610)
Q Consensus 264 ~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~--g~~---l~~-~~~~~~~~~--~~-~~~~~~~~~--L~I~~v~~~ 332 (610)
...+..+.+.+|++++|.|.+.+.+.+.+.|+|. +.. +.. ......... .+ +......+. |.|.+++.+
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~ 84 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS 84 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence 3456778899999999999999999999999982 211 100 000000000 00 100111111 999999999
Q ss_pred CCeEEEEEeecCCc
Q psy10487 333 DAGEYTCYAENIRG 346 (610)
Q Consensus 333 D~G~Y~C~a~N~~G 346 (610)
|+|.|.|.+.+..+
T Consensus 85 DsG~Y~C~~~~~~~ 98 (253)
T 3to4_D 85 QGRTLYCTSSADHW 98 (253)
T ss_dssp SCEEEEEEEECSCC
T ss_pred hCeEEEEEEecCCC
Confidence 99999999998754
No 495
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=98.96 E-value=1.2e-09 Score=123.88 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=71.6
Q ss_pred CCceeeeecceEeecCceEEEEEEEEecCCCeEE-EE--eCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeE
Q psy10487 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTIL-WL--LNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGE 336 (610)
Q Consensus 260 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~-W~--~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 336 (610)
+|.+. .+.++.+.+|++++|.|.+.|.|.|.+. |+ ++|..+...... ..... ...+.|.|.+++..|+|.
T Consensus 165 ~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~--~~~~~----~~~~~l~I~~~~~~d~g~ 237 (731)
T 2v5y_A 165 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK--VTSSR----RFIASFNVVNTTKRDAGK 237 (731)
T ss_dssp SCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEE--ECCSS----EEEEEEEECSCCTTTCEE
T ss_pred ccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceE--Eeccc----cceEEEEEcccccccCeE
Confidence 45555 5668899999999999999999999998 88 677776543211 11111 234799999999999999
Q ss_pred EEEEeecCCcc-eeEEEEEEcCcc
Q psy10487 337 YTCYAENIRGN-ASGEISLDLPEI 359 (610)
Q Consensus 337 Y~C~a~N~~G~-~~~~~~L~V~~~ 359 (610)
|+|.|.|..|. .+..+.|.|...
T Consensus 238 Y~c~A~n~~G~~~s~~~~l~V~~~ 261 (731)
T 2v5y_A 238 YRCMIRTEGGVGISNYAELVVKEP 261 (731)
T ss_dssp EEEEEEETTEEEECCCEEEEEECC
T ss_pred EEEEEECCCCCcceeeEEEEEecC
Confidence 99999999998 777777877543
No 496
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=98.96 E-value=6.8e-10 Score=105.15 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=77.1
Q ss_pred CCCCCCCCCCCCccCC--Cc--ccccccccccCCCceeeeecceEeecCceEEEEEEEEe-cCCCeEEEEeCCEEeccCC
Q psy10487 231 LYSHPLSCTEPGMLQT--KH--WDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSS 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g--~~--~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~g~~l~~~~ 305 (610)
.+.+.|.|.+.+.... .. ...+.......+|.+...+....+.+|+.++|.|.+.| .|.|.|.|+++|..+....
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~~~ 160 (213)
T 3nl4_L 81 ADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGI 160 (213)
T ss_dssp GGCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCSSE
T ss_pred HHCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCCCCe
Confidence 4678899988765432 10 11122222234677776665556677999999999998 8999999999999886532
Q ss_pred -ccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEee
Q psy10487 306 -FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE 342 (610)
Q Consensus 306 -~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 342 (610)
.........++.+...+.|.|.++..+|+|.|+|.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 161 ENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred ecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 1111112223344556789999999999999999999
No 497
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=98.96 E-value=4.8e-10 Score=107.47 Aligned_cols=126 Identities=19% Similarity=0.245 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccC--CCceeeeecceEeecCceE-EEEEEE-EecCCCeEEEEeCCEEeccCC-
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFAC--PPNVTIKESMVIREAGGNV-TMSCYV-YGDPEPTILWLLNGQVLHNSS- 305 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c--~P~i~~~~~~~~v~~G~~v-~l~C~~-~g~P~p~v~W~~~g~~l~~~~- 305 (610)
.+.+.|.|.+.+...+.....+......- .|.+...+....+.+|+.+ +|.|.+ .|.|.|.+.|++++..+....
T Consensus 87 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~ 166 (231)
T 2pet_A 87 GDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVE 166 (231)
T ss_dssp GGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSS
T ss_pred ccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccc
Confidence 46788999976655333323333322222 2555556666777789987 999999 899999999999999887655
Q ss_pred ---cccee---eccCCceeeeeeEEEEEecCCCCCeEEEEEeec-----CCcc-eeEEEEEEc
Q psy10487 306 ---FDLLE---EEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN-----IRGN-ASGEISLDL 356 (610)
Q Consensus 306 ---~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-----~~G~-~~~~~~L~V 356 (610)
+.... ....++.+...+.|.|.....+|+|.|+|.|.| ..|. .+..+.|.|
T Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 167 MNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp CCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred cccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 11111 112223334457899986666679999999999 4555 555666555
No 498
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=98.95 E-value=9.9e-10 Score=103.59 Aligned_cols=123 Identities=20% Similarity=0.166 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCCccCCCcccccccccccCCCceeeeecceEeecCceEEEEEEEEecCC---CeEEEEeCCEEeccCCcc
Q psy10487 231 LYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPE---PTILWLLNGQVLHNSSFD 307 (610)
Q Consensus 231 l~~~~~~C~a~~~l~g~~~~~v~~~~~~c~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~---p~v~W~~~g~~l~~~~~~ 307 (610)
.+.+.|.|.+.+..+ .....+......-|..+...+. ..+.+|+.++|.|.+.|.++ ++|+|++++..+......
T Consensus 64 ~D~G~Y~C~a~n~~~-~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~ 141 (202)
T 1vca_A 64 GNEHSYLCTATCESR-KLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL 141 (202)
T ss_dssp GGCSEEEEEEEETTE-EEEEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEEEEECCc-eEeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccc
Confidence 467889999877643 2222333333222333344444 67889999999999998644 479999999887643211
Q ss_pred ceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcce-------eEEEEEEcC
Q psy10487 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-------SGEISLDLP 357 (610)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-------~~~~~L~V~ 357 (610)
... ...........|.|..+..+|.|.|+|+|.|..|.. +.++.|.|.
T Consensus 142 ~~~--~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~ 196 (202)
T 1vca_A 142 EDA--DRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196 (202)
T ss_dssp SCC--SSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEE
T ss_pred ccc--CcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEe
Confidence 100 000012334567888888889999999999998863 456666663
No 499
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=98.95 E-value=6.4e-10 Score=115.71 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=55.9
Q ss_pred eecCceEEEEEEEEec-CCC---eEEEEeCCEEeccCCccceeeccCCceeeeeeEEEEEecCCCCCeEEEEEeecCCcc
Q psy10487 272 REAGGNVTMSCYVYGD-PEP---TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN 347 (610)
Q Consensus 272 v~~G~~v~l~C~~~g~-P~p---~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 347 (610)
+.+|+.++|.|.+.|. |.| .|.|++++..+......... ...++.+...+.|.|..++.+|.|.|+|.|.|..+.
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~-~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~ 258 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPRE-EQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP 258 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCC-cccCCcEEEEEEEEechHhccCCCEEEEEEecCCCC
Confidence 7889999999999988 444 69999998665432211111 111223345568999999999999999999999875
Q ss_pred eeE
Q psy10487 348 ASG 350 (610)
Q Consensus 348 ~~~ 350 (610)
...
T Consensus 259 ~~~ 261 (376)
T 2aty_A 259 API 261 (376)
T ss_pred Cce
Confidence 433
No 500
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=98.95 E-value=2.4e-10 Score=111.62 Aligned_cols=80 Identities=16% Similarity=0.295 Sum_probs=50.9
Q ss_pred eeecceEeecCceEEEEEEEEe--cCCCeEEEEeC--CEEe--c----cCCccceeec--cCCcee-----eeeeEEEEE
Q psy10487 265 IKESMVIREAGGNVTMSCYVYG--DPEPTILWLLN--GQVL--H----NSSFDLLEEE--EGDALF-----EKSVSITLF 327 (610)
Q Consensus 265 ~~~~~~~v~~G~~v~l~C~~~g--~P~p~v~W~~~--g~~l--~----~~~~~~~~~~--~~~~~~-----~~~~~L~I~ 327 (610)
..+..+.+.+|++++|.|.+.+ .+.+.+.|++. +... . .......... .++... .....|+|.
T Consensus 4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 83 (248)
T 3u2s_H 4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN 83 (248)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 4567788999999999999986 34578999973 2111 0 0000000000 011111 112469999
Q ss_pred ecCCCCCeEEEEEeecC
Q psy10487 328 NVTDLDAGEYTCYAENI 344 (610)
Q Consensus 328 ~v~~~D~G~Y~C~a~N~ 344 (610)
+++.+|+|.|.|.+.+.
T Consensus 84 ~v~~~DsG~Y~C~~~~~ 100 (248)
T 3u2s_H 84 SLRVEDTATYFCVREAG 100 (248)
T ss_dssp SCCGGGCEEEEEEEEEE
T ss_pred CCCHHHCEEEEEEEeCC
Confidence 99999999999999885
Done!