RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10487
(610 letters)
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 276 bits (707), Expect = 7e-88
Identities = 78/341 (22%), Positives = 122/341 (35%), Gaps = 29/341 (8%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C C +P +L S +LDL++N +S L E + L NL
Sbjct: 12 CPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPT-RLTNL 66
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+ L ++ + + + F + L +DLS N + L + F L+VL L N I
Sbjct: 67 HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDA---LIHLTALESLNLNGNRLKHLSESVFFPT 200
+ F + L+ + L QI + L L L+L+ N+LK L +
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186
Query: 201 PNLK--TLSLDGNPWCCDCHLRSFRNWLLKSKL-----YSHPLSCTEPGMLQTKHWDDVK 253
P L L NP CDC L + +L + L C L D
Sbjct: 187 PAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLD-- 244
Query: 254 AQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEE 313
F C KES G +T+ C + + + + +
Sbjct: 245 --FFNCSEY---KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQG-------S 292
Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ ++ + V D G YTCYA N + + L
Sbjct: 293 NGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 238 bits (610), Expect = 2e-72
Identities = 79/316 (25%), Positives = 127/316 (40%), Gaps = 26/316 (8%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSG-IREVHRDTFKYL 104
F L ++ L L NN I + AF + +L R+ L + + F+ L
Sbjct: 143 FEYLSK-----LRELWLRNNPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEGAFEGL 195
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
L ++L I + L+ L ++GN E+R G F L LK + + + Q
Sbjct: 196 FNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253
Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
+ + ++A L +L LNL N L L +F P L L L NPW CDC +
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAW 313
Query: 225 WLLKSKLYS--HPLSCTEPGMLQTKHWDDVKAQEFAC-PPNVTIKESMVIREAGGNVTMS 281
WL + + C P ++ ++ +V F C P + + G +
Sbjct: 314 WLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELK 373
Query: 282 CYVYGDPEPTILWLL-NGQVLHNSSFD--LLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338
C P ++ WLL NG VL ++S + +G ++ +V D G YT
Sbjct: 374 CRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDG--------TLNFSHVLLSDTGVYT 423
Query: 339 CYAENIRGNASGEISL 354
C N+ GN++ L
Sbjct: 424 CMVTNVAGNSNASAYL 439
Score = 179 bits (457), Expect = 2e-50
Identities = 51/213 (23%), Positives = 92/213 (43%), Gaps = 7/213 (3%)
Query: 1 MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVL 60
L V +L A + S +CP C C +C + +P + S+ + L
Sbjct: 23 YLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSNTRYL 80
Query: 61 DLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWL 120
+L N I + + F+ L +L+ + L + IR++ F L L ++L DN + +
Sbjct: 81 NLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138
Query: 121 HQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC-QIHSVHKDALIHLTAL 179
F +L+ L+L NPI + + F ++P L ++L ++ + + A L L
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198
Query: 180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
+ LNL +K + P L+ L + GN
Sbjct: 199 KYLNLGMCNIKDMPN--LTPLVGLEELEMSGNH 229
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 236 bits (605), Expect = 2e-71
Identities = 85/341 (24%), Positives = 124/341 (36%), Gaps = 47/341 (13%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
F+ L S ++ L L ++ + EA L L + L++ I + +FK L
Sbjct: 148 FSGLNS-----LEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLY 200
Query: 106 I------------------------LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
L + ++ + + L+ L L+ NPI
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
+ + +L L+ I+L Q+ V A L L LN++GN+L L ESVF
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 202 NLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVK----AQEF 257
NL+TL LD NP CDC L + +C P +Q K + D F
Sbjct: 321 NLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYF 380
Query: 258 AC--PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLE-EEE 313
C K V + G V C GDP P ILWL ++ S L +
Sbjct: 381 TCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440
Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
G ++ + D G Y C A N GN S L
Sbjct: 441 G--------TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 163 bits (414), Expect = 3e-44
Identities = 53/227 (23%), Positives = 91/227 (40%), Gaps = 28/227 (12%)
Query: 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLD-------------------- 61
T CP C C ++ LC F A+P + ++ ++LD
Sbjct: 1 TGCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHL 58
Query: 62 ----LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
LN N +S + AF L NL+ + L+++ ++ + F L+ L ++D+S+N+I
Sbjct: 59 EELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
L F LK L + N + + F L L+ + L+ C + S+ +AL HL
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176
Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
L L L + + + F LK L + P+
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223
Score = 138 bits (349), Expect = 2e-35
Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 7/167 (4%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
FT L + + LD++ NKI L F+ L NL+ + + ++ + + F L
Sbjct: 100 FTGLSN-----LTKLDISENKIVILLDYMFQ--DLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
L ++ L + + + L VL L I +R F +L LK +E+ H
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 166 HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
++ L SL++ L + L+ L+L NP
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 232 bits (593), Expect = 5e-70
Identities = 71/316 (22%), Positives = 132/316 (41%), Gaps = 25/316 (7%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS-GIREVHRDTFKYL 104
F L ++ L L NN I + AF + +L+R+ L + + F+ L
Sbjct: 132 FVYLSK-----LKELWLRNNPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
+ L ++L+ + + +L L L+GN ++ +R G F L +L+ + + Q
Sbjct: 185 SNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ 242
Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
I + ++A +L +L +NL N L L +F P +L+ + L NPW C+C +
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSW 302
Query: 225 WLLKSKLYS--HPLSCTEPGMLQTKHWDDVKAQEFAC-PPNVTIKESMVIREAGGNVTMS 281
W+ + C P L+ ++ ++ F C P + + + G +
Sbjct: 303 WIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELK 362
Query: 282 CYVYGDPEPTILWLL-NGQVLHNSSFD--LLEEEEGDALFEKSVSITLFNVTDLDAGEYT 338
C ++ W+ NG V+ + ++ + +G ++ NVT D G YT
Sbjct: 363 CRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG--------TLNFTNVTVQDTGMYT 413
Query: 339 CYAENIRGNASGEISL 354
C N GN + +L
Sbjct: 414 CMVSNSVGNTTASATL 429
Score = 173 bits (441), Expect = 3e-48
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 7/213 (3%)
Query: 1 MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVL 60
+L V ++ + + CP C C +C N +P + ++ ++L
Sbjct: 12 LLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLL 69
Query: 61 DLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWL 120
+L+ N+I + +FK L +L+ + L + IR + F L L ++L DN++ +
Sbjct: 70 NLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127
Query: 121 HQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC-QIHSVHKDALIHLTAL 179
F+ +LK L+L NPI + + F ++P L+ ++L ++ + + A L+ L
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
LNL L+ + P L L L GN
Sbjct: 188 RYLNLAMCNLREIPN--LTPLIKLDELDLSGNH 218
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 188 bits (479), Expect = 2e-55
Identities = 68/285 (23%), Positives = 101/285 (35%), Gaps = 52/285 (18%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDI-------------------------- 57
CP C C K + C A+P + +
Sbjct: 2 CPGACVCY-NEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60
Query: 58 ----------------------QVLDL-NNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR 94
+ LDL +N ++ + F GL L ++L G++
Sbjct: 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQ 118
Query: 95 EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY 154
E+ F+ L L + L DN + L DTF L L+L+GN I+ + F L
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWC 214
L + L ++ VH A L L +L L N L L P L+ L L+ NPW
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Query: 215 CDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFAC 259
CDC R WL K + S + C+ P L + + A +
Sbjct: 239 CDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 175 bits (446), Expect = 2e-51
Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 29/238 (12%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP+ CRC+ T + C + +P + L LNNN+ + L
Sbjct: 5 CPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATG--------- 51
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
FK L L +++ S+N+I + + F G + + L N +
Sbjct: 52 ----------------IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
++ F L LKT+ L+ +I V D+ I L+++ L+L N++ ++ F +L
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPP 261
TL+L NP+ C+C+L WL K ++ + C +P L+ DV Q+F C
Sbjct: 156 STLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDD 213
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 168 bits (426), Expect = 4e-47
Identities = 51/235 (21%), Positives = 80/235 (34%), Gaps = 15/235 (6%)
Query: 123 DTFLGNDRLKVLYLNGNP-ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALES 181
G + L LY+ + L L L+ + + + V DA L
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 182 LNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEP 241
LNL+ N L+ LS +L+ L L GNP C C LR + W + +
Sbjct: 85 LNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALRWLQRWEEE----GLGGVPEQK 139
Query: 242 GMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL 301
+ P + ++ + G +V + C V G W+L
Sbjct: 140 LQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ 199
Query: 302 HNSSFDLLEEEEGDALFEKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLD 355
+ +TL NVT DL+ TC+AEN G A + ++
Sbjct: 200 SATVMKSGGLPSL--------GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 246
Score = 136 bits (343), Expect = 1e-35
Identities = 68/363 (18%), Positives = 108/363 (29%), Gaps = 54/363 (14%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLD--SDIQVLDL-NNNKISYLTKEAFKSIGL 80
CPD C G C L ++ L + N + +L + GL
Sbjct: 1 CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GL 55
Query: 81 LNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP 140
L+ + + SG+R V D F + L ++LS N + L T L+ L L+GNP
Sbjct: 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQELVLSGNP 114
Query: 141 ------ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE 194
+ L+ + L + +LQ + N + +
Sbjct: 115 LHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGD 174
Query: 195 SVFF-------PTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTK 247
V W L +S G+
Sbjct: 175 DVLLRCQVEGRGLEQAG--------W--------ILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 248 HWDDVKAQEFAC---------------PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTI 292
D+ + C + + + + V G P P++
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSL 278
Query: 293 LWLLNGQVLHNSSFDLLE-EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE 351
WL NG VL+ +SF E E + + L T ++ G YT A N G AS
Sbjct: 279 RWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS 338
Query: 352 ISL 354
I
Sbjct: 339 IMA 341
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 163 bits (414), Expect = 7e-47
Identities = 69/238 (28%), Positives = 102/238 (42%), Gaps = 30/238 (12%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C C+ T +P+ L I + L N I + AF L
Sbjct: 5 CPAACTCSNN----IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFS--PYKKL 58
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+RI DLS+NQI+ L D F G L L L GN ITE
Sbjct: 59 RRI------------------------DLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L F L L+ + L +I+ + DA L L L+L N+L+ +++ F P +
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPP 261
+T+ L NP+ CDCHL+ ++L + + + CT P L K +K+++F C
Sbjct: 155 QTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSA 212
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 160 bits (406), Expect = 1e-44
Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 13/208 (6%)
Query: 44 ANFTALPSTLDSDIQVLDLNNNKISYLTKE-AFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
+NF L ++ LD ++ + +++ F L NL + + ++ R F
Sbjct: 95 SNFLGLEQ-----LEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFN 147
Query: 103 YLTILVEVDLSDNQ-IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
L+ L + ++ N D F L L L+ + +L F L L+ + +
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-NLKTLSLDGNPWCCDCHLR 220
H S+ L +L+ L+ + N + + P +L L+L N + C C +
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267
Query: 221 SFRNWLLKSK---LYSHPLSCTEPGMLQ 245
SF W+ + + + C P Q
Sbjct: 268 SFLQWIKDQRQLLVEVERMECATPSDKQ 295
Score = 147 bits (372), Expect = 7e-40
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 11/192 (5%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C T C T++P+ + S L+L +NK+ L F L L
Sbjct: 1 CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFD--KLTQL 54
Query: 84 QRIYLKNSGIREVH--RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
++ L ++G+ + T L +DLS N + + FLG ++L+ L + +
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNL 113
Query: 142 TEL-RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNR-LKHLSESVFFP 199
++ F L L +++ H L++LE L + GN ++ +F
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 200 TPNLKTLSLDGN 211
NL L L
Sbjct: 174 LRNLTFLDLSQC 185
Score = 75.8 bits (187), Expect = 3e-15
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 109 EVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSV 168
E+ + + + L L N + L G F KL L + L +
Sbjct: 11 EIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 169 H--KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
+ T+L+ L+L+ N + +S + F L+ L +
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 112
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 153 bits (389), Expect = 9e-42
Identities = 49/239 (20%), Positives = 93/239 (38%), Gaps = 31/239 (12%)
Query: 1 MLAVVVILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVL 60
M + ++ + + S + + + C + ++PS L ++ L
Sbjct: 1 MPHTLWMVWVLGVIISLSKEESSNQASLSCD---RNGICKGSSGSLNSIPSGLTEAVKSL 57
Query: 61 DLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWL 120
DL+NN+I+Y++ + +NLQ + L ++GI + D+F L L +DLS N ++ L
Sbjct: 58 DLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115
Query: 121 HQDTFLGNDRLKVLYLNGNPI--------------------------TELRAGQFPKLPY 154
F L L L GNP T+++ F L +
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175
Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213
L+ +E+ + S +L + + L L+ + L E T +++ L L
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234
Score = 93.6 bits (233), Expect = 7e-21
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
+K L L+ N IT + + L+ + L I+++ +D+ L +LE L+L+ N L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 191 HLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLY 232
+LS S F P +L L+L GNP+ F + L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 154 bits (390), Expect = 4e-40
Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 4/188 (2%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
C K K+ C++ +P TL + + L+ + N + + F L+NL
Sbjct: 4 SDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS--RLINL 59
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+ L I +H DTF+ L + L+ N + ++ + G LK L+ I+
Sbjct: 60 TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
+ L+++ L I S+ L+ L+ N + +LS+
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179
Query: 204 KTLSLDGN 211
LSL+ N
Sbjct: 180 TNLSLNLN 187
Score = 149 bits (379), Expect = 1e-38
Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 13/208 (6%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
F P +++LDL ++ ++ L L+ + L +S + F L
Sbjct: 396 FKECPQ-----LELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLP 449
Query: 106 ILVEVDLSDNQIAWLHQ---DTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
L ++L N + ++ RL++L L+ ++ + F L + ++L H
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509
Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSF 222
++ S +AL HL + LNL N + + S+ +T++L NP C C F
Sbjct: 510 NRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF 568
Query: 223 RNWLLKSK---LYSHPLSCTEPGMLQTK 247
W ++ + C P +L+
Sbjct: 569 LEWYKENMQKLEDTEDTLCENPPLLRGV 596
Score = 117 bits (296), Expect = 6e-28
Identities = 30/169 (17%), Positives = 68/169 (40%), Gaps = 4/169 (2%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
F L ++ + + + ++ F+ + ++++ I L+ + +TF +
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278
Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH-CQ 164
L E+DL+ ++ L +G LK L L+ N L P L + ++ +
Sbjct: 279 GLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 165 IHSVHKDALIHLTALESLNLNGNRLK--HLSESVFFPTPNLKTLSLDGN 211
+ L +L L L+L+ + ++ +L++L+L N
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Score = 109 bits (274), Expect = 3e-25
Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 33/193 (17%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
++VLD NN I YL+KE S+ + L + I + F
Sbjct: 149 GFPTEK-----LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203
Query: 106 I-------------------------LVEVDLSDNQIAWLHQDTF--LGNDRLKVLYLNG 138
L D + F L ++ + L
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263
Query: 139 NPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFF 198
+ + + F L+ ++L + + L+ L+ L+ L L+ N+ ++L +
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISAS 322
Query: 199 PTPNLKTLSLDGN 211
P+L LS+ GN
Sbjct: 323 NFPSLTHLSIKGN 335
Score = 103 bits (259), Expect = 2e-23
Identities = 33/201 (16%), Positives = 70/201 (34%), Gaps = 31/201 (15%)
Query: 38 SALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN---SGIR 94
+ F L ++VL+L+++ + +++ F GL LQ + L+
Sbjct: 413 KVKDAQSPFQNLHL-----LKVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNHFPKGN 465
Query: 95 EVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY 154
++ + L L + LS ++ + Q F + + L+ N +T L
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525
Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGN--------------------RLKHLSE 194
+ + L I + L L+ ++NL N +L+ +
Sbjct: 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTED 584
Query: 195 SVFFPTPNLKTLSLDGNPWCC 215
++ P L+ + L C
Sbjct: 585 TLCENPPLLRGVRLSDVTLSC 605
Score = 63.5 bits (155), Expect = 9e-11
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 132 KVLYLNGNPITELRAGQFPK--LPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
K + E+ P + +E + ++ L L L+L ++
Sbjct: 15 KTYNCENLGLNEI-----PGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69
Query: 190 KHLSESVFFPTPNLKTLSLDGNP 212
+ E F L TL L NP
Sbjct: 70 YWIHEDTFQSQHRLDTLVLTANP 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 146 bits (369), Expect = 1e-39
Identities = 57/262 (21%), Positives = 91/262 (34%), Gaps = 26/262 (9%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI----- 78
C + C N TALP L D +L L+ N + +
Sbjct: 4 CEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59
Query: 79 ---------------GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQD 123
L L + L ++ ++ + + L L +D+S N++ L
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 124 TFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLN 183
G L+ LYL GN + L G P L+ + L + + + L L L++L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 184 LNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGM 243
L N L + + FF + L L GNPW C+C + FR WL + +
Sbjct: 179 LQENSLYTIPKG-FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVK 237
Query: 244 LQTKHWDDVKAQEFACPPNVTI 265
T + V+ P
Sbjct: 238 AMTSNVASVQCDNSDKFPVYKY 259
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 145 bits (368), Expect = 2e-38
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 13/188 (6%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
+ LD ++N I+ + + +L LQ L ++ LVEVDLS N++
Sbjct: 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-------WLLNYPGLVEVDLSYNEL 260
Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
+ F+ RL+ LY++ N + L +P LK ++L H + V ++
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQP-QFD 318
Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS 237
LE+L L+ N + L S LK L+L N W C+ FRN + +
Sbjct: 319 RLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRALFRNV-ARPAVDDADQH 374
Query: 238 CTEPGMLQ 245
C L+
Sbjct: 375 CKIDYQLE 382
Score = 143 bits (363), Expect = 7e-38
Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 5/166 (3%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
+ ++ +++ N+ + L ++ + L + I E+ F Y
Sbjct: 36 YFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAH 93
Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
+ ++ + N I +L F L VL L N ++ L G F P L T+ + + +
Sbjct: 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 166 HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ D T+L++L L+ NRL H+ S+ P+L ++ N
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYN 196
Score = 142 bits (361), Expect = 1e-37
Identities = 37/174 (21%), Positives = 75/174 (43%)
Query: 38 SALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH 97
+ + + + S L D D++ + + F+ I L N + + KNS +R++
Sbjct: 2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61
Query: 98 RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
+ ++L+D QI + F ++ LY+ N I L F +P L
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121
Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ L+ + S+ + + L +L+++ N L+ + + F T +L+ L L N
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 148 bits (375), Expect = 4e-38
Identities = 41/208 (19%), Positives = 79/208 (37%), Gaps = 12/208 (5%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTK-EAFKSIGLLNLQRIYLKNSGIREVHRDTFKY 103
NF L +Q LD ++ + +T+ AF L L + + + + F
Sbjct: 394 NFMGLEE-----LQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFLG 446
Query: 104 LTILVEVDLSDNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
LT L + ++ N + F L L L+ + ++ G F L L+ + + H
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSF 222
+ + L +L +L+ + NR++ + +L +L N C C + F
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKF 566
Query: 223 RNWLLKSKLYSHPLS---CTEPGMLQTK 247
W+ + K + + C P + T
Sbjct: 567 LQWVKEQKQFLVNVEQMTCATPVEMNTS 594
Score = 128 bits (323), Expect = 2e-31
Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 29/189 (15%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
+ C + C D + +P + S + +DL+ N + L +F L
Sbjct: 3 SLNPCIEVVPN--ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFS--NFSEL 58
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
Q + DLS +I + + G L L L GNPI
Sbjct: 59 QWL------------------------DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PN 202
G F L L+ + ++ S+ + L L+ LN+ N + +F N
Sbjct: 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154
Query: 203 LKTLSLDGN 211
L + L N
Sbjct: 155 LVHVDLSYN 163
Score = 112 bits (282), Expect = 3e-26
Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 9/171 (5%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
P+ ++ L L NK S FK + L +L + L + + ++ L
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMNKGSIS----FKKVALPSLSYLDLSRNALSFSGCCSYSDL 373
Query: 105 TI--LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLPYLKTIELQ 161
L +DLS N + F+G + L+ L + + + F L L +++
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFF-PTPNLKTLSLDGN 211
+ + LT+L +L + GN K + S F T NL L L
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Score = 93.9 bits (234), Expect = 3e-20
Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 10/169 (5%)
Query: 46 FTALPSTLDSDIQVLDL-NNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
L + + + + + + + + + L + F L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
+ + L+ I +L + L + + + LP+LK++ L +
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNK 339
Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVF--FPTPNLKTLSLDGN 211
+ L +L L+L+ N L + T +L+ L L N
Sbjct: 340 GSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
Score = 92.8 bits (231), Expect = 7e-20
Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 18/178 (10%)
Query: 43 DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYL-KNSGIREVHRDTF 101
+ L LD++ N I ++ +AF+ + L + L N + +
Sbjct: 170 VNDLQFLRE-NPQVNLSLDMSLNPIDFIQDQAFQ---GIKLHELTLRGNFNSSNIMKTCL 225
Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGND--------RLKVLYLNGNPITELRAGQFPKLP 153
+ L L L + + L +F L
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285
Query: 154 YLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ + L I + + + +SL++ +LK P LK+L+L N
Sbjct: 286 NVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMN 338
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 147 bits (373), Expect = 4e-38
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREV-HRD 99
C + S ++ LDL+ N + ++ GL L+ + ++S ++++
Sbjct: 364 CCSQSDFGTTS-----LKYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFS 415
Query: 100 TFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE-LRAGQFPKLPYLKTI 158
F L L+ +D+S F G L+VL + GN E F +L L +
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 159 ELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC- 217
+L CQ+ + A L++L+ LN+ N+LK + + +F +L+ + L NPW C C
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Query: 218 HLRSFRNWLLKS 229
+ WL K+
Sbjct: 536 RIDYLSRWLNKN 547
Score = 128 bits (324), Expect = 1e-31
Identities = 49/226 (21%), Positives = 78/226 (34%), Gaps = 34/226 (15%)
Query: 26 DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQR 85
+ C + C + NF +P L + LDL+ N + +L +F LQ
Sbjct: 1 EPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQV 56
Query: 86 IYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR 145
+ DLS +I + + L L L GNPI L
Sbjct: 57 L------------------------DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 146 AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLK 204
G F L L+ + + S+ + HL L+ LN+ N ++ +F NL+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 205 TLSLDGNPWCCDC-----HLRSFRNWLLKSKLYSHPLSCTEPGMLQ 245
L L N L L L +P++ +PG +
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Score = 112 bits (282), Expect = 3e-26
Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 9/173 (5%)
Query: 43 DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR--EVHRDT 100
+ F P+ ++ L +NK F + L +L+ + L +G+ +
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLPYLKTIE 159
T L +DLS N + + FLG ++L+ L + + ++ F L L ++
Sbjct: 369 DFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 160 LQHCQIHSVHKDALIHLTALESLNLNGNRLK-HLSESVFFPTPNLKTLSLDGN 211
+ H L++LE L + GN + + +F NL L L
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Score = 85.2 bits (211), Expect = 2e-17
Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 11/170 (6%)
Query: 46 FTALPSTLDSDIQVLDL-NNNKISYLTKEAFKSIGLLNLQRIYL-KNSGIREVHRDTFKY 103
L + + + N + K A + + L ++ L + D F
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280
Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
LT + L I + ++ + L L + + L L
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKRL---TFTSN 335
Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLS--ESVFFPTPNLKTLSLDGN 211
+ + + + L +LE L+L+ N L F T +LK L L N
Sbjct: 336 KGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Score = 84.4 bits (209), Expect = 2e-17
Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 14/173 (8%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI----GLLNLQRIYLKNSGIREVHRDT 100
N + + L + +++YL I L N+ L + I V +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
+ ++L + + L LK L N + LP L+ ++L
Sbjct: 302 Y--NFGWQHLELVNCKFGQF---PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDL 354
Query: 161 QHCQIH--SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ + T+L+ L+L+ N + +S S F L+ L +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHS 406
Score = 73.2 bits (180), Expect = 1e-13
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 36/209 (17%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR-EVHRDTFKYL 104
L + LDL+ N ++++ AFK + L ++ L+N+ V + + L
Sbjct: 169 LRVLHQ-MPLLNLSLDLSLNPMNFIQPGAFKE---IRLHKLTLRNNFDSLNVMKTCIQGL 224
Query: 105 TILVEVDL------SDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR---AGQFPKLPYL 155
L L ++ + + G L + + F L +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284
Query: 156 KTIELQHCQIHSVHKDAL-------------------IHLTALESLNLNGNRLKHLSESV 196
+ L I V + + L +L+ L N+ +
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-- 342
Query: 197 FFPTPNLKTLSLDGNP-WCCDCHLRSFRN 224
P+L+ L L N C +S
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 144 bits (366), Expect = 8e-38
Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 1/176 (0%)
Query: 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
+S + FK + ++ L S I + + F + T L ++ L+
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL 173
N+I + + F G L L L+ N + + + F L L+ ++L + I ++ +
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367
Query: 174 IHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLRSFRNWLLK 228
+ L L+ L L+ N+LK + + +F +L+ + L NPW C C + WL K
Sbjct: 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423
Score = 132 bits (334), Expect = 2e-33
Identities = 47/247 (19%), Positives = 88/247 (35%), Gaps = 17/247 (6%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
C +A+C + +P L + + +DL+ N I+ L + +F L +L
Sbjct: 4 GTSECSV----IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFS--RLQDL 56
Query: 84 QRIYLKNSGI-REVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
Q + ++ + +TF+ L+ L+ + L NQ L F G L+VL L +
Sbjct: 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116
Query: 143 E--LRAGQFPKLPYLKTIELQHCQIHSVHKDALI-HLTALESLNLNGNRLKHLSESVF-- 197
L F L L+ + L+ I + + ++ L+L N++K + E
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176
Query: 198 FPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEF 257
F + L L + + K + L + + A+ F
Sbjct: 177 FQGKHFTLLRLSSI---TLQDMNEYWLGWEKCGNPFK-NTSITTLDLSGNGFKESMAKRF 232
Query: 258 ACPPNVT 264
T
Sbjct: 233 FDAIAGT 239
Score = 89.0 bits (221), Expect = 6e-19
Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 31/191 (16%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
F L S +++L L +N I + +F + + L + ++ + +
Sbjct: 125 FKPLTS-----LEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFNKVKSICEEDLLNFQ 178
Query: 106 I--LVEVDLSDNQIAWLHQ--------DTFLGNDRLKVLYLNGNPITELRAGQFPKLPYL 155
+ LS + +++ N + L L+GN E A +F
Sbjct: 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238
Query: 156 KTIE-------------LQHCQIHSVHKDALIHL--TALESLNLNGNRLKHLSESVFFPT 200
I+ H L + +++ +L+ +++ L +SVF
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298
Query: 201 PNLKTLSLDGN 211
+L+ L+L N
Sbjct: 299 TDLEQLTLAQN 309
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 139 bits (352), Expect = 2e-37
Identities = 67/228 (29%), Positives = 99/228 (43%), Gaps = 25/228 (10%)
Query: 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI--- 78
C C K S C TA+PS + +D + LDL +NK+S L +AF +
Sbjct: 6 KKDGGVCSC--NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKL 63
Query: 79 -------------------GLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW 119
L NL+ +++ ++ ++ + F L L E+ L NQ+
Sbjct: 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 120 LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTAL 179
L F +L L L N + L G F KL LK + L + Q+ V + A LT L
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183
Query: 180 ESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWL 226
++L L+ N+LK + E F LK L L NPW C C+ + WL
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL 231
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 145 bits (366), Expect = 4e-37
Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 5/166 (3%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
+ ++ +++ N+ + L ++ + L + I E+ F Y
Sbjct: 42 YFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAH 99
Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
+ ++ + N I +L F L VL L N ++ L G F P L T+ + + +
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 166 HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ D T+L++L L+ NRL H+ S+ P+L ++ N
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYN 202
Score = 144 bits (364), Expect = 8e-37
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 13/184 (7%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
+ LD ++N I+ + L + L+++ + + LVEVDLS N++
Sbjct: 214 EELDASHNSINVVRGPVNV-----ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 266
Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
+ F+ RL+ LY++ N + L +P LK ++L H + V ++
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQP-QFD 324
Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS 237
LE+L L+ N + L S LK L+L N W C+ FRN + +
Sbjct: 325 RLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRALFRNV-ARPAVDDADQH 380
Query: 238 CTEP 241
C
Sbjct: 381 CKID 384
Score = 142 bits (359), Expect = 3e-36
Identities = 37/174 (21%), Positives = 75/174 (43%)
Query: 38 SALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH 97
+ + + + S L D D++ + + F+ I L N + + KNS +R++
Sbjct: 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67
Query: 98 RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
+ ++L+D QI + F ++ LY+ N I L F +P L
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127
Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ L+ + S+ + + L +L+++ N L+ + + F T +L+ L L N
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181
Score = 120 bits (301), Expect = 9e-29
Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 23/170 (13%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
VL L N +S L + F L + + N+ + + DTF+ T L + LS N++
Sbjct: 126 TVLVLERNDLSSLPRGIFH--NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 118 AWLHQDTFLG----------------NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
+ ++ L + N I +R +L LK LQ
Sbjct: 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQ 240
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
H + L++ L ++L+ N L+ + F L+ L + N
Sbjct: 241 HNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288
Score = 39.5 bits (92), Expect = 0.003
Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 12/154 (7%)
Query: 43 DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
+ N ++ L L++N I L ++ L L + +R + R+ +
Sbjct: 317 ERNQPQFDR-----LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 371
Query: 103 YLTILVEVDLS-----DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
+ ++ + D + L+ Y+ + E + T
Sbjct: 372 PAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQ--YIALTSVVEKVQRAQGRCSATDT 429
Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
I H + + + L E L N L+
Sbjct: 430 INSVQSLSHYITQQGGVPLQGNEQLEAEVNELRA 463
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 136 bits (345), Expect = 6e-37
Identities = 35/213 (16%), Positives = 73/213 (34%), Gaps = 14/213 (6%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
C C ++ + +PS L Q L L + + AF L N+
Sbjct: 4 SSPPCECH---QEEDFRVTCKDIQRIPS-LPPSTQTLKLIETHLRTIPSHAFS--NLPNI 57
Query: 84 QRIYL-KNSGIREVHRDTFKYLTILVEVDLSDNQ-IAWLHQDTFLGNDRLKVLYLNGNPI 141
RIY+ + ++++ +F L+ + +++ + + + ++ D LK L + +
Sbjct: 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117
Query: 142 TELRAGQF-PKLPYLKTIELQH-CQIHSVHKDALIHLTA-LESLNLNGNRLKHLSESVFF 198
+E+ + S+ +A L +L L N + F
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177
Query: 199 PTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKL 231
T L + L+ N + +F + S
Sbjct: 178 GT-KLDAVYLNKNKYLTVIDKDAFGG--VYSGP 207
Score = 97.4 bits (243), Expect = 5e-23
Identities = 29/169 (17%), Positives = 64/169 (37%), Gaps = 14/169 (8%)
Query: 46 FTALPSTLDSDIQVLDL-NNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF-KY 103
F L + +++ N ++Y+ +A K L L+ + + N+G++ T
Sbjct: 76 FYNLSK-----VTHIEIRNTRNLTYIDPDALK--ELPLLKFLGIFNTGLKMFPDLTKVYS 128
Query: 104 LTILVEVDLSDN-QIAWLHQDTFLG-NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
I ++++DN + + + F G + L L N T ++ F L + L
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLN 187
Query: 162 HCQ-IHSVHKDALIHL-TALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
+ + + KDA + + L+++ + L L +
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 138 bits (348), Expect = 3e-36
Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 14/229 (6%)
Query: 24 CPD-TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLN 82
C C C + LC+++ T +PS L + L K+ + K AF G +
Sbjct: 2 CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFS--GFGD 55
Query: 83 LQRIYLKNSGIRE-VHRDTFKYLTILVEVDLSD-NQIAWLHQDTFLGNDRLKVLYLNGNP 140
L++I + + + E + D F L L E+ + N + +++ + F L+ L ++
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115
Query: 141 ITELRAGQFPKLPYLKTIELQH-CQIHSVHKDALIHLTA-LESLNLNGNRLKHLSESVFF 198
I L +++Q IH++ +++ + L+ L LN N ++ + S F
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175
Query: 199 PTPNLKTLSLDGNPWCCDCHLRSFRN--WLLKSKLYSHPLSCTEPGMLQ 245
T + D N F + + + L+
Sbjct: 176 GTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHSLPSYGLE 223
Score = 116 bits (292), Expect = 1e-28
Identities = 40/224 (17%), Positives = 73/224 (32%), Gaps = 14/224 (6%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLK-NSGIREVHRDTFKYL 104
F LP+ +Q L ++N I +L I L + ++ N I + R++F L
Sbjct: 100 FQNLPN-----LQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFVGL 152
Query: 105 TI-LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
+ V + L+ N I +H F G ++ + N + EL F +++
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212
Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFR 223
+IHS+ L +L L + + + L SL P C R
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLT-YPSHCCAFANWRR 267
Query: 224 NWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKE 267
+ + + E + E +
Sbjct: 268 QISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFD 311
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 136 bits (344), Expect = 5e-36
Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 10/181 (5%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
+ L NN IS ++ + + IYL N+ I + + + +DL N+I
Sbjct: 102 ETLHAANNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 118 AWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
++ + D L+ L L N I +++ LKT++L ++ +
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSA 213
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPL 236
+ ++L N+L + ++ + NL+ L GN + C F + +
Sbjct: 214 AGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272
Query: 237 S 237
Sbjct: 273 K 273
Score = 113 bits (284), Expect = 9e-28
Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 12/157 (7%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
+ ++ + ++ + + N++ + L + + ++ T L ++LS
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
N + L+ L LN N + EL P ++T+ + I V
Sbjct: 68 NVLYETL--DLESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSR-- 118
Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+++ L N++ L + ++ L L N
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154
Score = 109 bits (275), Expect = 1e-26
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
+++ LDL+ N +S ++ L+ + L ++ + E + L+ L +DL++
Sbjct: 34 WNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNN 89
Query: 115 NQIAWLHQDTFL------GN----------DRLKVLYLNGNPITELRAGQFPKLPYLKTI 158
N + L + N K +YL N IT LR ++ +
Sbjct: 90 NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 159 ELQHCQIHSVHKDALI-HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+L+ +I +V+ L LE LNL N + + V F LKTL L N
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF--AKLKTLDLSSN 201
Score = 97.4 bits (243), Expect = 2e-22
Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGN 139
+ + +S +++ + + E+DLS N ++ + +L++L L+ N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 140 PITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFP 199
+ E L L+T++L + + L+ ++E+L+ N + +S S
Sbjct: 69 VLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRG-- 119
Query: 200 TPNLKTLSLDGN 211
K + L N
Sbjct: 120 -QGKKNIYLANN 130
Score = 87.7 bits (218), Expect = 4e-19
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 98 RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
+ + ++D+ + +K L L+GNP++++ A L+
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ L ++ L L+ L +L+LN N ++ L P+++TL N
Sbjct: 63 LNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANN 109
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 142 bits (359), Expect = 7e-36
Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 22/231 (9%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
F +PS +Q L L + + L NL + L N+ I ++ D + L
Sbjct: 450 FALVPS-----LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504
Query: 106 ILVEVDLSDNQIAWLHQDTFLGND--------RLKVLYLNGNPITELRAGQFPKLPYLKT 157
L +DL N +A L + G L +L L N E+ F L LK
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564
Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNPWCCD 216
I+L ++++ + +L+SLNL N + + + VF P NL L + NP+ C
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624
Query: 217 C-HLRSFRNWLLKSKL----YSHPLSCTEPGMLQTK---HWDDVKAQEFAC 259
C + F NW+ ++ S C P +D ++ A
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAH 675
Score = 141 bits (358), Expect = 1e-35
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 6/186 (3%)
Query: 29 RCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYL 88
+C + + A C T +P L ++I VL+L +N++ L F L + +
Sbjct: 1 KCTVSH--EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDV 56
Query: 89 KNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ 148
+ I ++ + + L +L ++L N+++ L TF L L+L N I +++
Sbjct: 57 GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116
Query: 149 FPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVF--FPTPNLKTL 206
F K L T++L H + S + L L+ L L+ N+++ L F +LK L
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176
Query: 207 SLDGNP 212
L N
Sbjct: 177 ELSSNQ 182
Score = 120 bits (302), Expect = 1e-28
Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 10/184 (5%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
L + +Q L L+NNKI L E +L+++ L ++ I+E F +
Sbjct: 141 QVQLEN-----LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195
Query: 106 ILVEVDLSDNQIAWLHQDTF---LGNDRLKVLYLNGNPITELRAGQFPKLPY--LKTIEL 160
L + L++ Q+ + L N ++ L L+ + ++ F L + L ++L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLR 220
+ ++ V D+ L LE L N ++HL N++ L+L + L
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 221 SFRN 224
S
Sbjct: 316 SLPK 319
Score = 118 bits (297), Expect = 5e-28
Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS--GIREVHRDTFKYLTI--LVEV 110
++ L++ +N I + F GL+NL+ + L NS +R + +TF L L +
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT-ELRAGQFPKLPYLKTIELQHCQIHSVH 169
+L+ N+I+ + D F L+VL L N I EL ++ L + I L + + +
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446
Query: 170 KDALIHLTALESLNLNGNRLKHLSE--SVFFPTPNLKTLSLDGN 211
+++ + +L+ L L LK++ S F P NL L L N
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490
Score = 116 bits (293), Expect = 2e-27
Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 13/170 (7%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
+ I+ L L+N+++S + F + NL + L + + V D+F +L L L
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGN---------PITELRAGQFPKLPYLKTIELQHCQI 165
N I L + G ++ L L + + ++ F L L+ + ++ I
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 166 HSVHKDALIHLTALESLNLNGNRLK--HLSESVF--FPTPNLKTLSLDGN 211
+ + L L+ L+L+ + L+ F L L+L N
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391
Score = 100 bits (252), Expect = 2e-22
Identities = 33/186 (17%), Positives = 77/186 (41%), Gaps = 20/186 (10%)
Query: 45 NFTALPSTL-----DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD 99
+ +T +++ +LDL+ N ++ + ++F L L+ +L+ + I+ +
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSH 290
Query: 100 TFKYLTILVEVDLSDN---------QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP 150
+ L + ++L + + + +F L+ L + N I +++ F
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350
Query: 151 KLPYLKTIELQH--CQIHSVHKDALIHL--TALESLNLNGNRLKHLSESVFFPTPNLKTL 206
L LK + L + + ++ + + L + L LNL N++ + F +L+ L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 207 SLDGNP 212
L N
Sbjct: 411 DLGLNE 416
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 140 bits (354), Expect = 2e-35
Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 13/209 (6%)
Query: 43 DANFTALPSTLDSDIQVLDLNNNKISYLT-KEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
+NF L ++ LD ++ + ++ F L NL + + ++ R F
Sbjct: 389 SSNFLGLEQ-----LEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIF 441
Query: 102 KYLTILVEVDLSDNQIAW-LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
L+ L + ++ N D F L L L+ + +L F L L+ + +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-NLKTLSLDGNPWCCDCHL 219
H S+ L +L+ L+ + N + + P +L L+L N + C C
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561
Query: 220 RSFRNWLLKSK---LYSHPLSCTEPGMLQ 245
+SF W+ + + + C P Q
Sbjct: 562 QSFLQWIKDQRQLLVEVERMECATPSDKQ 590
Score = 115 bits (289), Expect = 5e-27
Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 29/187 (15%)
Query: 26 DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQR 85
+ C + C + NF +P L + LDL+ N + +L +F LQ
Sbjct: 1 EPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQV 56
Query: 86 IYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELR 145
+ DLS +I + + L L L GNPI L
Sbjct: 57 L------------------------DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 146 AGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLK 204
G F L L+ + + S+ + HL L+ LN+ N ++ +F NL+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 205 TLSLDGN 211
L L N
Sbjct: 153 HLDLSSN 159
Score = 98.2 bits (245), Expect = 1e-21
Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 9/171 (5%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGI--REVHRDTFK 102
F P+ ++ L +NK F + L +L+ + L +G+ + +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLPYLKTIELQ 161
T L +DLS N + + + FLG ++L+ L + + ++ F L L +++
Sbjct: 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLK-HLSESVFFPTPNLKTLSLDGN 211
H L++LE L + GN + + +F NL L L
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Score = 79.7 bits (197), Expect = 8e-16
Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 29/193 (15%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI----GLLNLQRIYLKNSGIREVHRDT 100
N + + L + +++YL I L N+ L + I V +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDR-------------------LKVLYLNGNPI 141
+ ++L + + R L+ L L+ N +
Sbjct: 302 Y--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359
Query: 142 T--ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE-SVFF 198
+ + LK ++L + ++ + + L LE L+ + LK +SE SVF
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 199 PTPNLKTLSLDGN 211
NL L +
Sbjct: 419 SLRNLIYLDISHT 431
Score = 78.5 bits (194), Expect = 2e-15
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 11/170 (6%)
Query: 46 FTALPSTLDSDIQVLDLNN-NKISYLTKEAFKSIGLLNLQRIYL-KNSGIREVHRDTFKY 103
L + + + N + K A + + L ++ L + D F
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280
Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
LT + L I + ++ + L L + + L L
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKRL-----TFT 333
Query: 164 QIHSVHKDALIHLTALESLNLNGNRL--KHLSESVFFPTPNLKTLSLDGN 211
+ + + L +LE L+L+ N L K F T +LK L L N
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Score = 68.5 bits (168), Expect = 3e-12
Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 16/186 (8%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYL-KNSGIREVHRDTFKYL 104
L + LDL+ N ++++ AFK + L ++ L N V + + L
Sbjct: 169 LRVLHQ-MPLLNLSLDLSLNPMNFIQPGAFK---EIRLHKLTLRNNFDSLNVMKTCIQGL 224
Query: 105 TILVEVDLSDNQ------IAWLHQDTFLGNDRLKVLYLNGNPITELR---AGQFPKLPYL 155
L L + + + G L + + F L +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284
Query: 156 KTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCC 215
+ L I V + + L L + L S G
Sbjct: 285 SSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342
Query: 216 DCHLRS 221
+ L S
Sbjct: 343 EVDLPS 348
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 134 bits (339), Expect = 4e-35
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 8/170 (4%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVH--RDTFK 102
LP + +Q L ++ N+I+ + K F GL + + L + ++ F+
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
+ L + ++D I + Q L L+L+GN IT++ A L L + L
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
I +V +L + L L+LN N+L + ++ + L N
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNN 274
Score = 130 bits (329), Expect = 1e-33
Identities = 45/196 (22%), Positives = 68/196 (34%), Gaps = 35/196 (17%)
Query: 18 SPDWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKS 77
P CP C+C + C D +P L D +LDL NNKI+
Sbjct: 19 EPMGPVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT--------- 65
Query: 78 IGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLN 137
E+ FK L L + L +N+I+ + F +L+ LYL+
Sbjct: 66 -----------------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 138 GNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK--HLSES 195
N + EL L L+ + +I V K L + + L N LK +
Sbjct: 109 KNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 196 VFFPTPNLKTLSLDGN 211
F L + +
Sbjct: 166 AFQGMKKLSYIRIADT 181
Score = 125 bits (317), Expect = 4e-32
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 19/179 (10%)
Query: 43 DANFTALPSTLDSDIQVLDLNNNKI--SYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
+ F L + V++L N + S + AF+ G+ L I + ++ I + +
Sbjct: 138 KSVFNGLNQ-----MIVVELGTNPLKSSGIENGAFQ--GMKKLSYIRIADTNITTIPQGL 190
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
LT L L N+I + + G + L L L+ N I+ + G P+L+ + L
Sbjct: 191 PPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT------PNLKTLSLDGNPW 213
+ ++ V L ++ + L+ N + + + F P + +SL NP
Sbjct: 248 NNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
Score = 119 bits (301), Expect = 6e-30
Identities = 27/174 (15%), Positives = 66/174 (37%), Gaps = 19/174 (10%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
F + + + + + I+ + + +L ++L + I +V + K L
Sbjct: 167 FQGMKK-----LSYIRIADTNITTIPQGLPP-----SLTELHLDGNKITKVDAASLKGLN 216
Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
L ++ LS N I+ + + L+ L+LN N + ++ G Y++ + L + I
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNI 275
Query: 166 HSVHKDALI------HLTALESLNLNGNRLKH--LSESVFFPTPNLKTLSLDGN 211
++ + + ++L N +++ + S F + L
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 110 bits (277), Expect = 8e-27
Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
N T +P L + L L+ NKI+ + + K GL NL ++ L + I V +
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANT 239
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP------KLPYLKTI 158
L E+ L++N++ + + ++V+YL+ N I+ + + F K +
Sbjct: 240 PHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298
Query: 159 ELQHCQI--HSVHKDALIHLTALESLNLNGNR 188
L + + + ++ L +
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 136 bits (344), Expect = 1e-34
Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 10/177 (5%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
+ L NN IS ++ + + IYL N+ I + + + +DL N+I
Sbjct: 102 ETLHAANNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 118 AWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
++ + D L+ L L N I +++ LKT++L ++ +
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSA 213
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYS 233
+ ++L N+L + ++ + NL+ L GN + C F +
Sbjct: 214 AGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
Score = 113 bits (284), Expect = 7e-27
Identities = 24/158 (15%), Positives = 56/158 (35%), Gaps = 12/158 (7%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
+ ++ + ++ + + N++ + L + + ++ T L ++LS
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
N + L+ L LN N + EL P ++T+ + I V
Sbjct: 68 NVLYETL--DLESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSR-- 118
Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
+++ L N++ L + ++ L L N
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155
Score = 108 bits (271), Expect = 3e-25
Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 13/158 (8%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
+++ LDL+ N +S ++ L+ + L ++ + E + L+ L +DL++
Sbjct: 34 WNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNN 89
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
N + L ++ L+ N I+ + + + L + +I +
Sbjct: 90 NYVQELLVGP-----SIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEG 141
Query: 175 HLTALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGN 211
+ ++ L+L N + ++ + + L+ L+L N
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Score = 97.2 bits (242), Expect = 1e-21
Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGN 139
+ + +S +++ + + E+DLS N ++ + +L++L L+ N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 140 PITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFP 199
+ E L L+T++L + + L+ ++E+L+ N + +S S
Sbjct: 69 VLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRG-- 119
Query: 200 TPNLKTLSLDGN 211
K + L N
Sbjct: 120 -QGKKNIYLANN 130
Score = 87.6 bits (217), Expect = 2e-18
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 98 RDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
+ + ++D+ + +K L L+GNP++++ A L+
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ L ++ L L+ L +L+LN N ++ L P+++TL N
Sbjct: 63 LNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANN 109
Score = 86.8 bits (215), Expect = 3e-18
Identities = 20/175 (11%), Positives = 43/175 (24%), Gaps = 11/175 (6%)
Query: 45 NFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
+ L +++ DL N T F S +Q + ++++ +
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQ--TVAKQTVKKLTGQNEE 281
Query: 103 YLTILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
T+ + + L +L G+ L + +
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE-NQARQRE 340
Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
I+ Q +V + A +L L + L
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395
Score = 65.6 bits (160), Expect = 2e-11
Identities = 14/157 (8%), Positives = 38/157 (24%), Gaps = 5/157 (3%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLT 105
L + + +L ++ L E + I R V
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERE---NQARQREIDALKEQYRTVIDQVTLRKQ 360
Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
+ ++ + + + L EL + L+ + +
Sbjct: 361 AKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHATEEQSPLQLLRAIVKRY 419
Query: 166 -HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
+ + A+ ++ ++ L+E
Sbjct: 420 EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKK 456
Score = 31.0 bits (70), Expect = 1.2
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 178 ALESLNLNGNRLKHLS----------ESVFFPTPNLKTLSLDGN 211
A+ + NGNR K S+ N+K L L GN
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 132 bits (333), Expect = 2e-34
Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 9/170 (5%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIRE--VHRDTFK 102
+ +P L S + L +++N+I + K F GL N+ I + + + F
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
L L + +S+ ++ + +D + L L+L+ N I + + L + L H
Sbjct: 171 GLK-LNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
QI + +L L L L+L+ N+L + + L+ + L N
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNN 275
Score = 124 bits (313), Expect = 2e-31
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 34/191 (17%)
Query: 22 TDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL 81
CP C C + C D A+P + D +LDL NN IS
Sbjct: 25 AMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS------------- 67
Query: 82 NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
E+ +D FK L L + L +N+I+ +H+ F +L+ LY++ N +
Sbjct: 68 -------------ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS-ESVFFPT 200
E+ L L+ + +I V K L + + + GN L++ E F
Sbjct: 115 VEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 201 PNLKTLSLDGN 211
L L +
Sbjct: 172 LKLNYLRISEA 182
Score = 122 bits (309), Expect = 4e-31
Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 21/191 (10%)
Query: 43 DANFTALPSTLDSDIQVLDLNNNKI--SYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
F+ L + + +++ N + S AF L L + + + + + +D
Sbjct: 140 KGVFSGLRN-----MNCIEMGGNPLENSGFEPGAFDG---LKLNYLRISEAKLTGIPKDL 191
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
+ L L L N+I + + L +L L L N I + G LP L+ + L
Sbjct: 192 PETLNEL---HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT------PNLKTLSLDGNPW- 213
+ ++ V L L L+ + L+ N + + + F P +SL NP
Sbjct: 249 DNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
Query: 214 CCDCHLRSFRN 224
+ +FR
Sbjct: 308 YWEVQPATFRC 318
Score = 109 bits (274), Expect = 2e-26
Identities = 31/171 (18%), Positives = 65/171 (38%), Gaps = 23/171 (13%)
Query: 43 DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
+A T +P L + L L++NKI + E L R+ L ++ IR + +
Sbjct: 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLS 238
Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
+L L E+ L +N+++ + L+V+YL+ N IT++ F + +
Sbjct: 239 FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-------- 289
Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKH--LSESVFFPTPNLKTLSLDGN 211
+ ++L N + + + + F + +
Sbjct: 290 ----------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 50.0 bits (120), Expect = 9e-07
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 45 NFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIG----LLNLQRIYLKNSGI--REV 96
+ +P+ L +QV+ L+ N I+ + F +G I L N+ + EV
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311
Query: 97 HRDTFKYLTILVEVDLSDNQ 116
TF+ +T + + + +
Sbjct: 312 QPATFRCVTDRLAIQFGNYK 331
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 136 bits (343), Expect = 3e-34
Identities = 40/219 (18%), Positives = 84/219 (38%), Gaps = 30/219 (13%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHR--DTFK 102
L S ++ LDL+ N + + G +LQ + L + +R + + +
Sbjct: 330 SQHLKS-----LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKL---------- 152
L L +D+S N + D+ ++++ L L+ I ++ L
Sbjct: 385 TLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443
Query: 153 -------PYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKT 205
P L+ + + ++ ++ +L L + ++ N+LK + + +F +L+
Sbjct: 444 DSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501
Query: 206 LSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS--CTEPG 242
+ L NPW C C + + L S C+ G
Sbjct: 502 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 540
Score = 120 bits (304), Expect = 3e-29
Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 37/190 (19%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
C + C + +FT++PS L + ++ LDL+ NKI+Y+ ++
Sbjct: 4 CDASGVCD---------GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRA------ 48
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
L + L ++I + D F L+ L L+ N ++
Sbjct: 49 --------------------CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALI-HLTALESLNL-NGNRLKHLSESVFFPTP 201
L + F L LK + L ++ +L +LT L++L + N + F
Sbjct: 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148
Query: 202 NLKTLSLDGN 211
+L L +
Sbjct: 149 SLNELEIKAL 158
Score = 107 bits (268), Expect = 1e-24
Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 9/178 (5%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD-TFKYLTILVEVDLSD-N 115
+ LDL++N +S L+ F L +L+ + L + + + F LT L + + +
Sbjct: 77 EHLDLSDNHLSSLSSSWFG--PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
+ + + F G L L + + ++ + + + L + + +
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194
Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN-----PWCCDCHLRSFRNWLLK 228
L+++ L L L S + L ++L+
Sbjct: 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252
Score = 95.9 bits (239), Expect = 5e-21
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 4/138 (2%)
Query: 88 LKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAG 147
++ + + L DLS N+I ++ L+VL L + I +
Sbjct: 12 GRSRSFTSIPSGLTAAMKSL---DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68
Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-PNLKTL 206
F L L+ ++L + S+ L++L+ LNL GN + L + FP NL+TL
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 207 SLDGNPWCCDCHLRSFRN 224
+ + F
Sbjct: 129 RIGNVETFSEIRRIDFAG 146
Score = 92.5 bits (230), Expect = 7e-20
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
D + +K L L+ N IT + G L+ + L+ +I+++
Sbjct: 10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
DA L +LE L+L+ N L LS S F P +LK L+L GNP
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Score = 88.6 bits (220), Expect = 1e-18
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 11/170 (6%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
F P +D + + S LT E+F LL L R L+ S + F
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE--LLKLLRYILELSEV------EFDDC 261
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
T+ D + ++ + + + ++ L++ + + + L +K I +++ +
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321
Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHL---SESVFFPTPNLKTLSLDGN 211
+ V HL +LE L+L+ N + + + P+L+TL L N
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371
Score = 85.2 bits (211), Expect = 1e-17
Identities = 15/173 (8%), Positives = 53/173 (30%), Gaps = 20/173 (11%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
I L L+ ++ ++L + L +++ + L+++ + + + +
Sbjct: 174 IHHLTLHLSESAFLLEIFAD--ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231
Query: 117 IA------------------WLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI 158
+ L + F + N + + + ++ +
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291
Query: 159 ELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ + L ++ + + +++ + S +L+ L L N
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 137 bits (347), Expect = 4e-34
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 20/233 (8%)
Query: 27 TCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRI 86
+C + A + N T +P L + + L L+ N I +T +F L LQ +
Sbjct: 1 SCSFD----GRIAFYRFCNLTQVPQVL-NTTERLLLSFNYIRTVTASSFP--FLEQLQLL 53
Query: 87 YLK-NSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE-- 143
L + ++ F+ L L +DL ++I +LH D F G L L L +++
Sbjct: 54 ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVH-KDALIHLTALESLNLNGNRLKHLSESVFFP--T 200
L+ G F L L ++L QI S++ + L +L+S++ + N++ + E P
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173
Query: 201 PNLKTLSLDGN------PWCCDCHLRSFRNWLLKS-KLYSHPLSCTEPGMLQT 246
L SL N + FRN +L+ + + + G
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226
Score = 129 bits (326), Expect = 2e-31
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 5/175 (2%)
Query: 52 TLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVD 111
L I + I + F + +++ + L + + ++ F+ L L ++
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296
Query: 112 LSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKD 171
L+ N+I + + F G D L+VL L+ N + EL + F LP + I+LQ I +
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356
Query: 172 ALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWL 226
L L++L+L N L + P++ + L GN + N +
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPKINLTANLI 406
Score = 126 bits (318), Expect = 2e-30
Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 17/231 (7%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD-TFKY 103
LP ++ ++ L+ N++ L F + +LQ + L + D T
Sbjct: 392 KLVTLPK-INLTANLIHLSENRLENLDILYFLL-RVPHLQILILNQNRFSSCSGDQTPSE 449
Query: 104 LTILVEVDLSDNQIAW-----LHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI 158
L ++ L +N + L D F G L+VLYLN N + L G F L L+ +
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509
Query: 159 ELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH 218
L ++ + + L LE L+++ N+L + VF +L L + N + C+C
Sbjct: 510 SLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564
Query: 219 LRSFRNWLLKSKL----YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTI 265
L +F NWL + + + C P + + +
Sbjct: 565 LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKS 615
Score = 117 bits (295), Expect = 1e-27
Identities = 40/188 (21%), Positives = 82/188 (43%), Gaps = 19/188 (10%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
S ++ LDL++ + L F+ L +L+ + L + I ++ + F L L ++LS
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK-DAL 173
N + L+ F G ++ + L N I ++ F L L+T++L+ + ++H ++
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383
Query: 174 IHLT--------------ALESLNLNGNRLKHLSESVFFPT-PNLKTLSLDGNPWCCDCH 218
+ ++L+ NRL++L F P+L+ L L+ N + C
Sbjct: 384 PDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF-SSCS 442
Query: 219 LRSFRNWL 226
+
Sbjct: 443 GDQTPSEN 450
Score = 112 bits (281), Expect = 6e-26
Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 18/174 (10%)
Query: 56 DIQVLDLNNNKISYLTKEAF----KSIGLLNLQRIYLKNSGIREVHRDTF---------- 101
+ L N + + + L+ + + +G F
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234
Query: 102 --KYLTILVEVDLSDNQIAWLHQDTF--LGNDRLKVLYLNGNPITELRAGQFPKLPYLKT 157
++ + I Q+TF L ++ L L+ + L + F L LK
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294
Query: 158 IELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ L + +I+ + +A L L+ LNL+ N L L S F+ P + + L N
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 128 bits (323), Expect = 1e-33
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 3/204 (1%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
C C GKK C+ + ++PS + +D + LDL + ++ L+ F+ GL L
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR--GLTKL 61
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
+ L + ++ + F LT L + L++NQ+A L F +L LYL GN +
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L +G F +L LK + L Q+ S+ A LT L++L+L+ N+L+ + F L
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 204 KTLSLDGNPWCCDC-HLRSFRNWL 226
+T++L GN + C + W+
Sbjct: 182 QTITLFGNQFDCSRCEILYLSQWI 205
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 127 bits (321), Expect = 4e-33
Identities = 49/258 (18%), Positives = 88/258 (34%), Gaps = 57/258 (22%)
Query: 26 DTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLN---------------------- 63
+ C + + C + NF +P L + LDL+
Sbjct: 1 EPCVE--VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58
Query: 64 --NNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLH 121
+I + A++ L +L + L + I+ + F L+ L ++ + +A L
Sbjct: 59 LSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 122 QDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALE 180
LK L + N I F L L+ ++L +I S++ L L +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 181 ---------------------------SLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213
L L+ N+LK + + +F +L+ + L NPW
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236
Query: 214 CCDC-HLRSFRNWLLKSK 230
C C + WL K+
Sbjct: 237 DCSCPRIDYLSRWLNKNS 254
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 124 bits (312), Expect = 3e-30
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT--FKYLTILVEVDL 112
S LD +NN ++ E L L+ + L+ + ++E+ + + L ++D+
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 113 SDNQI-AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKD 171
S N + + L L ++ N +T+ P +K ++L +I S+ K
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKSIPKQ 439
Query: 172 ALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSF-RNWLLKSK 230
+ L AL+ LN+ N+LK + + +F +L+ + L NPW C C + WL K+
Sbjct: 440 VV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 498
Score = 94.9 bits (236), Expect = 1e-20
Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 30/190 (15%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
+P L +L+++ N IS L S
Sbjct: 7 RSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILS----------------------- 43
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
L+ L + +S N+I +L F N L+ L L+ N + ++ LK ++L
Sbjct: 44 ---LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDL 97
Query: 161 QHCQIHSVHKDALI-HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHL 219
++ +++ L+ L L+ L+ S K L + G +
Sbjct: 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP 157
Query: 220 RSFRNWLLKS 229
+++ +S
Sbjct: 158 EGLQDFNTES 167
Score = 73.4 bits (180), Expect = 8e-14
Identities = 21/170 (12%), Positives = 56/170 (32%), Gaps = 3/170 (1%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAF-KSIGLLNLQRIYLKNSGIREVHRDTFKY 103
P + + ++ N + + + ++ ++ + L+ +
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274
Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
L L + + + + + + + + K+ ++ +
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334
Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSE--SVFFPTPNLKTLSLDGN 211
+ + HLT LE+L L N+LK LS+ + +L+ L + N
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
Score = 52.9 bits (127), Expect = 2e-07
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 42 KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
D F LP + +VLDL++NKI + K+ K L LQ + + ++ ++ V F
Sbjct: 412 TDTIFRCLPPRI----KVLDLHSNKIKSIPKQVVK---LEALQELNVASNQLKSVPDGIF 464
Query: 102 KYLTILVEVDLSDN 115
LT L ++ L N
Sbjct: 465 DRLTSLQKIWLHTN 478
Score = 43.7 bits (103), Expect = 1e-04
Identities = 18/171 (10%), Positives = 49/171 (28%), Gaps = 8/171 (4%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
+ +++ LDL+ N L + L+ + L + + + +L
Sbjct: 80 KLVKISCHPTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 105 TIL-VEVDLSDNQIAWLHQDTF--LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
I V + L + + + L +++ + + L+ ++
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 162 ----HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSL 208
+ T + NL N ++ S + ++
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 104 bits (261), Expect = 5e-26
Identities = 54/243 (22%), Positives = 86/243 (35%), Gaps = 54/243 (22%)
Query: 23 DCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLN 82
DCP C C+ + C +P + L LN+N++ ++ +
Sbjct: 1 DCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG-------- 48
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
F L LV+++L NQ+ + + F G ++ L L N I
Sbjct: 49 -----------------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPN 202
E+ F L L++LNL N++ + F +
Sbjct: 92 EISNKMFLG------------------------LHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 203 LKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACP-P 261
L +L+L NP+ C+CHL F WL K L C P ++ D+ EF C
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187
Query: 262 NVT 264
N
Sbjct: 188 NSE 190
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 107 bits (268), Expect = 1e-24
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR--DTFKY 103
+ S L+ N + + + L LQ + L+ +G++ + K
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST--LKRLQTLILQRNGLKNFFKVALMTKN 401
Query: 104 LTILVEVDLSDNQIAWLHQDT-FLGNDRLKVLYLNGNPITELRAGQFPKLPY-LKTIELQ 161
++ L +D+S N + D + + VL L+ N +T F LP +K ++L
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVKVLDLH 458
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDC-HLR 220
+ +I S+ KD HL AL+ LN+ N+LK + + VF +L+ + L NPW C C +R
Sbjct: 459 NNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517
Query: 221 SFRNWLLK 228
W+ K
Sbjct: 518 YLSEWINK 525
Score = 79.5 bits (196), Expect = 9e-16
Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 36/208 (17%)
Query: 28 CRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIY 87
+ + + N T +P L + L L+ N IS L
Sbjct: 28 FSNE---LESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISF---------- 74
Query: 88 LKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAG 147
L+ L + LS N+I L FL N L+ L ++ N + +
Sbjct: 75 ----------------LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI--- 115
Query: 148 QFPKLPYLKTIELQHCQIHSVHKDALI-HLTALESLNLNGNRLKHLSESVFFPTPNLKTL 206
+ L+ ++L + +LT L L L+ + + L +L
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA---HLHLS 172
Query: 207 SLDGNPWCCDCHLRSFRNWLLKSKLYSH 234
+ + + + + H
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLH 200
Score = 65.7 bits (160), Expect = 2e-11
Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 2/170 (1%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKS-IGLLNLQRIYLKNSGIREVHRDTFKY 103
T P+ L+ +Q ++ L + + + LN+ + + RE +
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303
Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
L L+ + + + + + + + L+ + + P +
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363
Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213
L L++L L N LK+ V T N+ +L
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMSSLETLDVSL 412
Score = 41.4 bits (97), Expect = 9e-04
Identities = 21/203 (10%), Positives = 54/203 (26%), Gaps = 42/203 (20%)
Query: 46 FTALPSTLDSDIQVLDLNNNKIS----------------------YLTKEAFKSIGLLNL 83
F L + L L+ K ++ +S+ + N
Sbjct: 142 FGNLTK-----LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLG-------NDRLKVLYL 136
++L + L + LS+ ++ + + L + L
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256
Query: 137 NGNPITE---LRAGQFPKLPYLKTIELQHCQIHSV-----HKDALIHLTALESLNLNGNR 188
T ++ QF ++ + + + I + L +L ++
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316
Query: 189 LKHLSESVFFPTPNLKTLSLDGN 211
E+++ + L +
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSIS 339
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 105 bits (263), Expect = 1e-23
Identities = 30/184 (16%), Positives = 66/184 (35%), Gaps = 21/184 (11%)
Query: 45 NFTALPSTLD----SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
N P++ + +LD +NK+ +L EAF + L + L + I E+ D
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFG--TNVKLTDLKLDYNQIEEIPEDF 614
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPY----- 154
+ + + S N++ ++ + + + + N I +
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674
Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-------NLKTLS 207
T+ L + +I + + + ++ L+ N + + E+ P L T+
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734
Query: 208 LDGN 211
L N
Sbjct: 735 LRFN 738
Score = 96.5 bits (240), Expect = 6e-21
Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 37/218 (16%)
Query: 45 NFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSI-----------------GLLNLQR 85
T + + + +Q++ N+ +Y L +L
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495
Query: 86 IYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQ---------DTFLGNDRLKVLYL 136
+ L N D L L ++++ N+ Q D ++++ Y+
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555
Query: 137 NGNPITEL-RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195
N + E + K+ L ++ H ++ + +A L L L+ N+++ + E
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPED 613
Query: 196 VFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYS 233
T ++ L N L+ N +Y
Sbjct: 614 FCAFTDQVEGLGFSHN------KLKYIPNIFNAKSVYV 645
Score = 90.3 bits (224), Expect = 5e-19
Identities = 30/214 (14%), Positives = 58/214 (27%), Gaps = 44/214 (20%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN-------SGIREVHR 98
++ + + L+ N+I E F + + I L N +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFAT--GSPISTIILSNNLMTSIPENSLKPKD 721
Query: 99 DTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRA----------- 146
+K +L +DL N++ L D L + ++ N +
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781
Query: 147 --------------GQFP----KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNR 188
Q+P P L +++ I V + L L++ N
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNP 838
Query: 189 LKHLSESVFFP--TPNLKTLSLDGNPWCCDCHLR 220
+ + P + L D C
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872
Score = 68.4 bits (167), Expect = 4e-12
Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 24/182 (13%)
Query: 45 NFTALPSTLDSDIQVLDL------NNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR 98
++ + D + + DL N ++ + K++ S+ + + + + I +
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK--- 442
Query: 99 DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI 158
+ LT L + +++ + + + N L L +
Sbjct: 443 -AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS-----NLKDLTDV 496
Query: 159 ELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT---------PNLKTLSLD 209
EL +C + D L L L+SLN+ NR ++ T P ++ +
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556
Query: 210 GN 211
N
Sbjct: 557 YN 558
Score = 59.5 bits (144), Expect = 2e-09
Identities = 30/215 (13%), Positives = 59/215 (27%), Gaps = 18/215 (8%)
Query: 9 LAACLGTTGSPDWTDCPDTC-----RCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLN 63
L A +W T W K+ + D L + + + L L
Sbjct: 274 LKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN--NGRVTGLSLA 331
Query: 64 NNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI-AWLHQ 122
+A L L+ + R + ++I +
Sbjct: 332 GFGAKGRVPDAIGQ--LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389
Query: 123 DTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK------DALIHL 176
+ RL + L + I + + I L+ QI ++ A+ L
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
T L+ + + + + +V + N N
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482
Score = 53.7 bits (129), Expect = 1e-07
Identities = 16/115 (13%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Query: 45 NFTALPSTLD--SDIQVLDLNNNKIS---YLTKEAFKSIG-LLNLQRIYLKNSGIREVHR 98
F++ P+ S ++ + + + + + ++ I +L ++ + ++ IR+V
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823
Query: 99 DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLP 153
L IL D++DN + + + L + ++R +
Sbjct: 824 KLTPQLYIL---DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 93.5 bits (233), Expect = 4e-22
Identities = 50/239 (20%), Positives = 82/239 (34%), Gaps = 59/239 (24%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C C + LP + D+ L L+ N+ + + KE
Sbjct: 4 CPTECTC----LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKE---------- 49
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
L +DLS+N+I+ L +F +L L L+ N +
Sbjct: 50 -----------------LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
+ F L +L L+L+GN + + E F L
Sbjct: 93 IPPRTFDGL------------------------KSLRLLSLHGNDISVVPEGAFNDLSAL 128
Query: 204 KTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS--CTEPGMLQTKHWDDVKAQEFACP 260
L++ NP CDC+++ +W+ Y P C PG + K +++F C
Sbjct: 129 SHLAIGANPLYCDCNMQWLSDWVKSE--YKEPGIARCAGPGEMADKLLLTTPSKKFTCA 185
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 95.7 bits (239), Expect = 1e-21
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 14/156 (8%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
L LN N+I + L +L + I ++ +T L + + +N+I
Sbjct: 180 YSLSLNYNQIEDI--SPLA--SLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKI 233
Query: 118 AWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
L + L N +L L + N I+++ A L LK + + QI + L +L
Sbjct: 234 TDL---SPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDI--SVLNNL 286
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
+ L SL LN N+L + V NL TL L N
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322
Score = 94.1 bits (235), Expect = 4e-21
Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 12/155 (7%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
N+I+ + + L + + N+ I ++ L+ L +++ NQI
Sbjct: 202 HYFTAYVNQITDI--TPVA--NMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQI 255
Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
+ + + +LK+L + N I+++ L L ++ L + Q+ + + + LT
Sbjct: 256 SDI--NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311
Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
L +L L+ N + + + +
Sbjct: 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344
Score = 88.0 bits (219), Expect = 4e-19
Identities = 32/157 (20%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
++++ L+LN N+I+ + L+ L +Y+ + I ++ + LT L E+ L++
Sbjct: 66 TNLEYLNLNGNQITDI--SPLS--NLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNE 119
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
+ I+ + L + L L N + + L + + ++ V +
Sbjct: 120 DNISDISPLANLTK--MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV--TPIA 174
Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+LT L SL+LN N+++ +S +L + N
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209
Score = 85.7 bits (213), Expect = 3e-18
Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115
I L + K++ + + I L NL+ + L + I ++ L L + + N
Sbjct: 46 ITKLVVAGEKVASI-----QGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTN 98
Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
+I + L+ LYLN + I+++ L + ++ L S L +
Sbjct: 99 KITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSN 153
Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+T L L + +++K ++ +L +LSL+ N
Sbjct: 154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187
Score = 85.3 bits (212), Expect = 3e-18
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
L I+ + +A L R L+ + + +V T + L + ++ ++ ++
Sbjct: 3 ATLATLPAPINQIFPDA----DLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKV 56
Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
A + +L N L+ L LNGN IT++ L L + + +I + AL +LT
Sbjct: 57 ASIQGIEYLTN--LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLT 110
Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
L L LN + + +S + +L+L N
Sbjct: 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGAN 142
Score = 85.3 bits (212), Expect = 4e-18
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 10/134 (7%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ L + NNKI+ L L L + + + I ++ + K LT L +++ NQ
Sbjct: 223 LNSLKIGNNKITDL--SPLA--NLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ 276
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
I+ + +L L+LN N + L L T+ L I + L L
Sbjct: 277 ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASL 332
Query: 177 TALESLNLNGNRLK 190
+ ++S + +K
Sbjct: 333 SKMDSADFANQVIK 346
Score = 83.7 bits (208), Expect = 1e-17
Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 40 LCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRD 99
+ DA+ L ++ + + L ++ ++ + + +
Sbjct: 15 IFPDADLAEG--------IRAVLQKASVTDVVTQE----ELESITKLVVAGEKVASI--Q 60
Query: 100 TFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE 159
+YLT L ++L+ NQI + +L LY+ N IT++ A L L+ +
Sbjct: 61 GIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELY 116
Query: 160 LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
L I + L +LT + SLNL N L L++ +
Sbjct: 117 LNEDNISDI--SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES 165
Score = 60.6 bits (148), Expect = 4e-10
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
++L++ +N+IS + L L ++L N+ + + LT L + LS N I
Sbjct: 268 KMLNVGSNQISDI--SVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323
Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITE 143
+ ++ I +
Sbjct: 324 TDI--RPLASLSKMDSADFANQVIKK 347
Score = 49.8 bits (120), Expect = 1e-06
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
L PI ++ L LQ + V L ++ L + G ++
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVA 57
Query: 191 HLSESVFFPTPNLKTLSLDGN 211
+ + NL+ L+L+GN
Sbjct: 58 SIQGIEYL--TNLEYLNLNGN 76
Score = 47.2 bits (113), Expect = 8e-06
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
S + L LNNN++ E GL NL ++L + I ++ L+ + D ++
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIG--GLTNLTTLFLSQNHITDI--RPLASLSKMDSADFAN 342
Query: 115 NQI 117
I
Sbjct: 343 QVI 345
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 92.0 bits (229), Expect = 6e-21
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 5/174 (2%)
Query: 56 DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDN 115
+++ L L NK+ + A K L NL + L + ++ + F LT L E+ L +N
Sbjct: 64 NVRYLALGGNKLHDI--SALKE--LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 116 QIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
Q+ L F L L L N + L G F KL L ++L + Q+ S+ +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLK 228
LT L+ L L N+LK + + VF +L+ + L NPW C C +R W+ K
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233
Score = 77.0 bits (190), Expect = 8e-16
Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 16/179 (8%)
Query: 37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREV 96
++ P ++ +L ++ L ++ +I NS I+ V
Sbjct: 1 ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDA--VTQ--NELNSIDQIIANNSDIKSV 56
Query: 97 HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRL---KVLYLNGNPITELRAGQFPKL 152
+YL + + L N++ + L L L GN + L G F KL
Sbjct: 57 --QGIQYLPNVRYLALGGNKL------HDISALKELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 153 PYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
LK + L Q+ S+ LT L LNL N+L+ L + VF NL L L N
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 90.9 bits (226), Expect = 1e-20
Identities = 34/178 (19%), Positives = 79/178 (44%), Gaps = 16/178 (8%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
S +Q + +N+ I L + NL+ ++L ++ I ++ K LT L E+ ++
Sbjct: 41 SGVQNFNGDNSNIQSL--AGMQF--FTNLKELHLSHNQISDL--SPLKDLTKLEELSVNR 94
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
N++ L + + L L+L+ N + + + L L+ + +++ ++ S+ L
Sbjct: 95 NRLKNL---NGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSI--VMLG 147
Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLY 232
L+ LE L+L+GN + + + + L G C + ++ + + +
Sbjct: 148 FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK-CVNEPVKYQPELYITNTVK 202
Score = 83.9 bits (208), Expect = 3e-18
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 17/157 (10%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+L ++ L + L +Q NS I+ + ++ T L E+ LS NQ
Sbjct: 21 AVKQNLGKQSVTDLVSQK----ELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQ 74
Query: 117 IAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIH 175
I+ L + L + +L+ L +N N + L L + L + ++ D+LIH
Sbjct: 75 ISDL---SPLKDLTKLEELSVNRNRLKNLNGIPSACL---SRLFLDNNELRDT--DSLIH 126
Query: 176 LTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
L LE L++ N+LK + L+ L L GN
Sbjct: 127 LKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE 161
Score = 67.4 bits (165), Expect = 1e-12
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
L V+ +L + + ++ + + I L LK + L
Sbjct: 16 PGLANAVKQNLGKQSVT--DLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLS 71
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
H QI + L LT LE L++N NRLK+L+ P+ L L LD N
Sbjct: 72 HNQISDL--SPLKDLTKLEELSVNRNRLKNLN---GIPSACLSRLFLDNN 116
Score = 31.1 bits (71), Expect = 0.75
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++VLDL+ N+I+ L + I L L I V D +
Sbjct: 152 LEVLDLHGNEITNTGGLT----RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207
Query: 117 I 117
Sbjct: 208 W 208
Score = 30.4 bits (69), Expect = 1.5
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
I+ V D L NL + L ++ + D +
Sbjct: 8 PINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS 51
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 89.3 bits (222), Expect = 2e-20
Identities = 54/206 (26%), Positives = 79/206 (38%), Gaps = 31/206 (15%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C + C T++P+ + + LDL N + L F
Sbjct: 1 CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDE------ 50
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
LT L ++ L N++ L F L L L+ N +
Sbjct: 51 --------------------LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L G F KL LK + L Q+ S+ LT L+ L L N+LK + + VF +L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 204 KTLSLDGNPWCCDCH-LRSFRNWLLK 228
+ + L NPW C C +R W+ K
Sbjct: 151 QYIWLHDNPWDCTCPGIRYLSEWINK 176
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 91.3 bits (227), Expect = 2e-20
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
++ +L ++ + L ++ +I NS I+ V +YL + ++ L+
Sbjct: 24 AETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
N++ + L N L L+L+ N + +L + L LK++ L+H I + + L+
Sbjct: 78 NKLTDIKPLANLKN--LGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI--NGLV 131
Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
HL LESL L N++ + +V L TLSL+ N
Sbjct: 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 166
Score = 90.5 bits (225), Expect = 3e-20
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 15/176 (8%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ L LN NK++ + + L NL ++L + ++++ + K L L + L N
Sbjct: 70 VTKLFLNGNKLTDI--KPLA--NLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNG 123
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
I+ + + + +L+ LYL N IT++ +L L T+ L+ QI + L L
Sbjct: 124 ISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGL 177
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLY 232
T L++L L+ N + L NL L L C + + N ++ + +
Sbjct: 178 TKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE-CLNKPINHQSNLVVPNTVK 230
Score = 82.8 bits (205), Expect = 1e-17
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 13/156 (8%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
L L+ NK+ L + K L L+ + L+++GI ++ + +L L + L +N+I
Sbjct: 93 GWLFLDENKVKDL--SSLK--DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI 146
Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
+ +L L L N I+++ L L+ + L I + AL L
Sbjct: 147 TDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLK 200
Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLS-LDGNP 212
L+ L L + + T+ DG+
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
Score = 63.9 bits (156), Expect = 3e-11
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 10/138 (7%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++ L L NNKI+ + L L + L+++ I ++ LT L + LS N
Sbjct: 136 LESLYLGNNKITDI--TVLSR--LTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNH 189
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
I+ L G L VL L L T++ + V + +
Sbjct: 190 ISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDD 245
Query: 177 TALESLNLNGNRLKHLSE 194
E N+ + + +E
Sbjct: 246 GDYEKPNVKWHLPEFTNE 263
Score = 60.8 bits (148), Expect = 2e-10
Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 12/127 (9%)
Query: 86 IYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITEL 144
+ I+++ + ++ +L + + + + N + I +
Sbjct: 7 TITVPTPIKQI--FSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSV 61
Query: 145 RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLK 204
+ LP + + L ++ + L +L L L L+ N++K L S LK
Sbjct: 62 QG--IQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115
Query: 205 TLSLDGN 211
+LSL+ N
Sbjct: 116 SLSLEHN 122
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 91.3 bits (227), Expect = 2e-20
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 22/169 (13%)
Query: 43 DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
D + + ++ +A L + + +G+ + + +
Sbjct: 15 DPALANA--------IKIAAGKSNVTDTVTQA----DLDGITTLSAFGTGVTTI--EGVQ 60
Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
YL L+ ++L DNQI L ++ L L+GNP+ + A L +KT++L
Sbjct: 61 YLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTS 116
Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
QI V L L+ L+ L L+ N++ ++S NL+ LS+
Sbjct: 117 TQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA 161
Score = 89.0 bits (221), Expect = 1e-19
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
I L ++ + E + L NL + LK++ I ++ K LT + E++LS N
Sbjct: 43 ITTLSAFGTGVTTI--EGVQ--YLNNLIGLELKDNQITDL--APLKNLTKITELELSGNP 96
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + L + +K L L IT++ L L+ + L QI ++ L L
Sbjct: 97 LKNVSAIAGLQS--IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGL 150
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
T L+ L++ ++ L+ L TL D N
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183
Score = 88.2 bits (219), Expect = 2e-19
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ L+L +N+I+ L K L + + L + ++ V L + +DL+ Q
Sbjct: 65 LIGLELKDNQITDL--APLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQ 118
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
I G L+VLYL+ N IT + L L+ + + + Q+ + L +L
Sbjct: 119 I--TDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANL 172
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
+ L +L + N++ +S PNL + L N
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206
Score = 85.9 bits (213), Expect = 1e-18
Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 14/155 (9%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
L+L+ N + + A GL +++ + L ++ I +V L+ L + L NQI
Sbjct: 88 TELELSGNPLKNV--SAIA--GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQI 141
Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
+ G L+ L + +++L L L T++ +I + L L
Sbjct: 142 TNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI--SPLASLP 195
Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
L ++L N++ +S T NL ++L
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228
Score = 77.8 bits (192), Expect = 6e-16
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
I+ LDL + +I+ +T A GL NLQ +YL + I + LT L + + + Q
Sbjct: 109 IKTLDLTSTQITDVTPLA----GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQ 162
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
++ L +L L + N I+++ LP L + L++ QI V L +
Sbjct: 163 VSDL--TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANT 216
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
+ L + L + + NL ++ P
Sbjct: 217 SNLFIVTLTNQTITNQPVFYN---NNLVVPNVVKGP 249
Score = 65.9 bits (161), Expect = 7e-12
Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 11/137 (8%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
S++QVL L+ N+I+ + GL NLQ + + N+ + ++ L+ L + D
Sbjct: 129 SNLQVLYLDLNQITNI--SPLA--GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD 182
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
N+I+ + L ++L N I+++ L + L + I +
Sbjct: 183 NKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238
Query: 175 HLTALESL-NLNGNRLK 190
+L + +G +
Sbjct: 239 NLVVPNVVKGPSGAPIA 255
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 94.0 bits (234), Expect = 3e-20
Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 20/173 (11%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIG-LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
+ +L+ N++ + G + L + L + I E+ + + + + +
Sbjct: 330 KKLGMLECLYNQLEGK----LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385
Query: 114 DNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPY-------LKTIELQHCQI 165
N++ ++ + + + + N I + F L + +I L + QI
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445
Query: 166 HSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-------NLKTLSLDGN 211
K+ + L S+NL GN L + ++ L ++ L N
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498
Score = 79.7 bits (197), Expect = 8e-16
Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 37/218 (16%)
Query: 45 NFTALPSTLD--SDIQVLDLNNNKIS----------------YLTKEAFKSIG-LLNLQR 85
N T + + + ++ + N+ K L +L
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253
Query: 86 IYL-KNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGND--------RLKVLYL 136
+ + + ++ K L + ++++ N+ Q +++++Y+
Sbjct: 254 VEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312
Query: 137 NGNPITELRA-GQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSES 195
N + K+ L +E + Q+ A L SLNL N++ + +
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPAN 371
Query: 196 VFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYS 233
T ++ LS N L+ N +
Sbjct: 372 FCGFTEQVENLSFAHN------KLKYIPNIFDAKSVSV 403
Score = 79.7 bits (197), Expect = 9e-16
Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 46/215 (21%)
Query: 45 NFTALPSTLDSDI--QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT-- 100
NF L T I ++L+NN+IS KE F + L I L + + E+ +++
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFST--GSPLSSINLMGNMLTEIPKNSLK 478
Query: 101 -----FKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRA-------- 146
FK +L +DL N++ L D L + L+ N ++
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538
Query: 147 -----------------GQFP----KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN 185
++P P L +++ I V++ + L++
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIK 595
Query: 186 GNRLKHLSESVFFPTPNLKTLSLDGNPW--CCDCH 218
N + S P L + C
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630
Score = 60.8 bits (148), Expect = 8e-10
Identities = 25/192 (13%), Positives = 62/192 (32%), Gaps = 42/192 (21%)
Query: 53 LDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-------------- 98
+ + +N I++++K + L L++ Y+ NS +
Sbjct: 181 ITLKDTQIGQLSNNITFVSKAVMR---LTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237
Query: 99 -----DTFKYLTILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITELRA-- 146
+ L L +V++ + +L L ++++ + N
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA---LPE--MQLINVACNRGISGEQLK 292
Query: 147 ------GQFPKLPYLKTIELQHCQIHSVHKDALI-HLTALESLNLNGNRLKHLSESVFFP 199
P ++ I + + + + + + + L L N+L+ + F
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGS 351
Query: 200 TPNLKTLSLDGN 211
L +L+L N
Sbjct: 352 EIKLASLNLAYN 363
Score = 54.7 bits (132), Expect = 7e-08
Identities = 20/180 (11%), Positives = 53/180 (29%), Gaps = 30/180 (16%)
Query: 58 QVLDLNNNKISYLTKEAF-KSIG------LLNLQRIYLKNSGIREVHRDTFKYLTILVEV 110
+VL L ++ + K I R++ + + + R+ F L
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD--- 164
Query: 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK 170
++ + + + + + N IT + +L L+ + + + +
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENI 223
Query: 171 DALIHLTALESLNLNG------NRLKHLSE-------------SVFFPTPNLKTLSLDGN 211
E + LK L++ + P ++ +++ N
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283
Score = 53.1 bits (128), Expect = 2e-07
Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 23/170 (13%)
Query: 45 NFTALPSTLDSDI----------QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN---S 91
T +P D +DL NK++ L+ + + L L I L S
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT-TLPYLVGIDLSYNSFS 526
Query: 92 GI-REV-HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQF 149
+ + T K I + D N+ + L L + N I ++
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV----- 581
Query: 150 PK--LPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVF 197
+ P + ++++ S+ + L ++ + +
Sbjct: 582 NEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631
Score = 52.7 bits (127), Expect = 2e-07
Identities = 14/142 (9%), Positives = 35/142 (24%), Gaps = 13/142 (9%)
Query: 80 LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAW---------LHQDTFLGNDR 130
+ + L+ G D LT L + L + + + +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
++ + F L + K + + N +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDC---INSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 191 HLSESVFFPTPNLKTLSLDGNP 212
+S++ L+ + +P
Sbjct: 197 FVSKA-VMRLTKLRQFYMGNSP 217
Score = 48.1 bits (115), Expect = 6e-06
Identities = 17/140 (12%), Positives = 39/140 (27%), Gaps = 34/140 (24%)
Query: 45 NFTALPSTLD----SDIQVLDLNNNKISYLTKEAFK------------------------ 76
T L + +DL+ N S +
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558
Query: 77 --SIG-LLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKV 133
I +L ++ + ++ IR+V+ +++L D+ DN + +
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL---DIKDNPNISIDLSYVCPYIEAGM 615
Query: 134 LYLNGNPITELRAGQFPKLP 153
L + ++R +
Sbjct: 616 YMLFYDKTQDIRGCDALDIK 635
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 92.1 bits (228), Expect = 9e-20
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 22/169 (13%)
Query: 43 DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
D F +L ++ + L ++ +I NS I+ V +
Sbjct: 17 DDAFAET--------IKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSV--QGIQ 62
Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
YL + ++ L+ N++ + T L N L L+L+ N I +L + L LK++ L+H
Sbjct: 63 YLPNVTKLFLNGNKLTDIKPLTNLKN--LGWLFLDENKIKDLSS--LKDLKKLKSLSLEH 118
Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
I + + L+HL LESL L N++ + +V L TLSL+ N
Sbjct: 119 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163
Score = 90.9 bits (225), Expect = 2e-19
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ L LN NK++ + + L NL ++L + I+++ + K L L + L N
Sbjct: 67 VTKLFLNGNKLTDI--KPLT--NLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNG 120
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
I+ + + + +L+ LYL N IT++ +L L T+ L+ QI + L L
Sbjct: 121 ISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGL 174
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLR 220
T L++L L+ N + L NL L L
Sbjct: 175 TKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINH 216
Score = 81.7 bits (201), Expect = 2e-16
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 13/156 (8%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
L L+ NKI L + K L L+ + L+++GI ++ + +L L + L +N+I
Sbjct: 90 GWLFLDENKIKDL--SSLK--DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI 143
Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
+ +L L L N I+++ L L+ + L I + AL L
Sbjct: 144 TDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLK 197
Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLS-LDGNP 212
L+ L L + + T+ DG+
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
Score = 65.1 bits (158), Expect = 4e-11
Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 10/155 (6%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++ L L NNKI+ + L L + L+++ I ++ LT L + LS N
Sbjct: 133 LESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNH 186
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
I+ L G L VL L L T++ + + +
Sbjct: 187 ISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI--ISDD 242
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
E N+ + + +E F +
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277
Score = 52.4 bits (125), Expect = 3e-07
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 131 LKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLK 190
+ PI ++ L+ + L +++ + N + +K
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 191 HLSESVFFPTPNLKTLSLDGN 211
+ + PN+ L L+GN
Sbjct: 57 SVQGIQYL--PNVTKLFLNGN 75
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 87.4 bits (217), Expect = 1e-19
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 32/206 (15%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C + C+ ++P+ + ++ Q+L L++N+I+ L F S
Sbjct: 13 CPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDS------ 62
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITE 143
L L E+ L NQ+ L F +L VL L N +T
Sbjct: 63 --------------------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 144 LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNL 203
L + F +L +LK + + ++ + + + LT L L L+ N+LK + F +L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 204 KTLSLDGNPWCCDCH-LRSFRNWLLK 228
L GNPW C+C + RNW+
Sbjct: 162 THAYLFGNPWDCECRDIMYLRNWVAD 187
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 90.4 bits (225), Expect = 2e-19
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 14/156 (8%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ L LN N++ + L NL + L N+ I + LT L E+ L NQ
Sbjct: 223 LDELSLNGNQLKDI--GTLA--SLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQ 276
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
I+ + G L L LN N + ++ L L + L I + + L
Sbjct: 277 ISNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSL 330
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
T L+ L N++ +S N+ LS N
Sbjct: 331 TKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQ 364
Score = 90.4 bits (225), Expect = 2e-19
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
++ LD+++NK+S + L NL+ + N+ I ++ LT L E+ L+ NQ
Sbjct: 179 LERLDISSNKVSDI--SVLA--KLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQ 232
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + T L L L N I+ L L L ++L QI ++ L L
Sbjct: 233 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGL 286
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
TAL +L LN N+L+ +S NL L+L N
Sbjct: 287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319
Score = 86.6 bits (215), Expect = 3e-18
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ LDL NN+IS L GL L + L + I + LT L ++L++NQ
Sbjct: 245 LTDLDLANNQISNL--APLS--GLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQ 298
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + L L L N I+++ L L+ + + ++ V +L +L
Sbjct: 299 LEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANL 352
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPW 213
T + L+ N++ L+ + L L+ W
Sbjct: 353 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387
Score = 85.8 bits (213), Expect = 7e-18
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 16/158 (10%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
++ L ++ + L + + GI+ + D +YL L +++ S+
Sbjct: 24 AEKMKTVLGKTNVTDTVSQT----DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 77
Query: 115 NQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL 173
NQ+ + T L N +L + +N N I ++ L L + L + QI + D L
Sbjct: 78 NQLTDI---TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI--DPL 130
Query: 174 IHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+LT L L L+ N + +S +L+ LS
Sbjct: 131 KNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ 166
Score = 82.7 bits (205), Expect = 6e-17
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
+++ ++ +NN+++ + K L L I + N+ I ++ LT L + L +
Sbjct: 68 NNLTQINFSNNQLTDI--TPLK--NLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFN 121
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
NQI D L L L+ N I+++ A L L+ + + L
Sbjct: 122 NQIT--DIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDL---KPLA 174
Query: 175 HLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+LT LE L+++ N++ +S NL++L N
Sbjct: 175 NLTTLERLDISSNKVSDISV--LAKLTNLESLIATNN 209
Score = 81.5 bits (202), Expect = 2e-16
Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
L L N+IS + GL L + L + + ++ L L + L N I
Sbjct: 268 TELKLGANQISNI--SPLA--GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNI 321
Query: 118 AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLT 177
+ + + L L+ L+ N ++++ + L + + H QI + L +LT
Sbjct: 322 SDISPVSSLTK--LQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDL--TPLANLT 375
Query: 178 ALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ L LN + + N+ + N
Sbjct: 376 RITQLGLNDQAWTNAPVNYK---ANVSIPNTVKN 406
Score = 70.8 bits (174), Expect = 4e-13
Identities = 21/155 (13%), Positives = 53/155 (34%), Gaps = 12/155 (7%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ L+LN N++ + L NL + L + I ++ LT L + +N+
Sbjct: 289 LTNLELNENQLEDI--SPIS--NLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNK 342
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
++ + + + L N I++L L + + L + + ++
Sbjct: 343 VSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 398
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ + + N ++ + + N
Sbjct: 399 S-IPNTVKNVTGALIAPATISDGG-SYTEPDITWN 431
Score = 37.6 bits (88), Expect = 0.011
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
++I L +N+IS L L + ++ L + + ++I V
Sbjct: 353 TNINWLSAGHNQISDL--TPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITEL 144
+ + G+ + N +
Sbjct: 409 GALIAPATISDGGS--YTEPDITWNLPSYT 436
Score = 29.5 bits (67), Expect = 3.8
Identities = 5/40 (12%), Positives = 7/40 (17%), Gaps = 2/40 (5%)
Query: 172 ALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
L L + + TL D
Sbjct: 19 TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL 56
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 84.6 bits (210), Expect = 4e-19
Identities = 26/175 (14%), Positives = 61/175 (34%), Gaps = 28/175 (16%)
Query: 42 KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
D+ F A L + + +T+ + +L I L N + ++
Sbjct: 18 PDSTFKAY--------LNGLLGQSSTANITEA-----QMNSLTYITLANINVTDL--TGI 62
Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
+Y + ++ +++ + L+ L + G +T + L L +++
Sbjct: 63 EYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNR----LKHLSESVFFPTPNLKTLSLDGN 211
H + L + S++L+ N + L P LK+L++ +
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT-----LPELKSLNIQFD 169
Score = 76.5 bits (189), Expect = 3e-16
Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 9/139 (6%)
Query: 75 FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKV 133
L S + T + L + L++ + L T + +K
Sbjct: 17 IPDSTFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDL---TGIEYAHNIKD 70
Query: 134 LYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLS 193
L +N T L L+ + + + S L LT+L L+++ +
Sbjct: 71 LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128
Query: 194 ESVFFPTPNLKTLSLDGNP 212
+ P + ++ L N
Sbjct: 129 LTKINTLPKVNSIDLSYNG 147
Score = 76.5 bits (189), Expect = 3e-16
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 9/133 (6%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
+ L +NN + GL NL+R+ + + LT L +D+S +
Sbjct: 69 KDLTINNIHATNY--NPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124
Query: 118 AWLHQDTFLGNDRLKVLYLNGNP-ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
++ + L+ N IT++ LP LK++ +Q +H +
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY--RGIEDF 180
Query: 177 TALESLNLNGNRL 189
L L +
Sbjct: 181 PKLNQLYAFSQTI 193
Score = 51.5 bits (124), Expect = 1e-07
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYL-KNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+LD++++ L + I L N I ++ K L L +++ +
Sbjct: 115 TLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDG 170
Query: 117 IAWLHQDTFLGN-DRLKVLYLNGNPITELR 145
+ + + +L LY I +
Sbjct: 171 VHDY---RGIEDFPKLNQLYAFSQTIGGKK 197
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 81.8 bits (202), Expect = 1e-18
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLK--SKLYSH 234
L L GN L L + P L+T L NPW CDC L R WL +
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYR 90
Query: 235 PLSCTEPGMLQTKHWDDVKAQEFACP 260
L C P L+ + + E
Sbjct: 91 DLRCVAPPALRGRLLPYLAEDELRAA 116
Score = 43.6 bits (103), Expect = 2e-05
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFT--ALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL 81
CP C C T C T +LP+ D L L N ++ L + L
Sbjct: 2 CPAPCSCAGT----LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDA--LP 55
Query: 82 NLQRIYLKN 90
L+ +L
Sbjct: 56 ALRTAHLGA 64
Score = 33.6 bits (77), Expect = 0.058
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP 140
T L L+ N + L L+ +L NP
Sbjct: 33 TTEL---VLTGNNLTALPPGLLDALPALRTAHLGANP 66
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 78.6 bits (194), Expect = 5e-18
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P +T ES + + + V G+P+P + W NG +L+ S + + +
Sbjct: 4 APTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEIN 360
+ L N T ++ G+YT A+N G +IS P I+
Sbjct: 61 HG-CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 78.6 bits (194), Expect = 6e-18
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 259 CPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
+ K SM + E G + SC G+P PT+ WL GQVL S+ + + +
Sbjct: 13 LAARILTKPRSMTVYE-GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS- 70
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + +V D G Y+ EN G E +L
Sbjct: 71 -----TFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 79.3 bits (196), Expect = 1e-17
Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 4/125 (3%)
Query: 107 LVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQI 165
+ E+ L +++ + + L+ L +T + PKL LK +EL ++
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRV 76
Query: 166 HSVHKDALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHLRSFRN 224
+ L LNL+GN++K LS NLK+L L R
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136
Query: 225 WLLKS 229
LL
Sbjct: 137 KLLPQ 141
Score = 61.6 bits (150), Expect = 1e-11
Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 31/159 (19%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
SD++ L L+N++ + E + L+ + N G+ + L L +++LSD
Sbjct: 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
N+++ + L L L+GN I +L ++ L
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS-------------TIEP----------LK 110
Query: 175 HLTALESLNLNGN---RLKHLSESVFFPTPNLKTLSLDG 210
L L+SL+L L E+VF P L LDG
Sbjct: 111 KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT--YLDG 147
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 84.4 bits (209), Expect = 2e-17
Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 19/172 (11%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
C T L T + + L+ + NK++ L L + + + E+
Sbjct: 92 CDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVS-----QNPLLTYLNCARNTLTEI---D 143
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
+ T L E+D N+ + + +L L + N ITEL + L +
Sbjct: 144 VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNC 198
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
I + L L L+ + N+L + + P L NP
Sbjct: 199 DTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNP 244
Score = 80.5 bits (199), Expect = 3e-16
Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 19/155 (12%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ L +N I+ L NL + ++ + + LT L + N+
Sbjct: 66 LTKLICTSNNITTLDLS-----QNTNLTYLACDSNKLTNLDVTPLTKLTYL---NCDTNK 117
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ + N L L N +TE+ + L ++ + + +
Sbjct: 118 LT---KLDVSQNPLLTYLNCARNTLTEIDVSHNTQ---LTELDCHLNKKITK--LDVTPQ 169
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
T L +L+ + N++ L S L L+ D N
Sbjct: 170 TQLTTLDCSFNKITELDVSQN---KLLNRLNCDTN 201
Score = 79.3 bits (196), Expect = 6e-16
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 18/167 (10%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
T + T + + D + N ++ L L ++ + + E+ +
Sbjct: 223 KLTEIDVTPLTQLTYFDCSVNPLTELDVSTLS-----KLTTLHCIQTDLLEI---DLTHN 274
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
T L+ + + + N +L +L ITEL + P L + L + +
Sbjct: 275 TQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTE 329
Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ + + H T L+SL+ ++ S P L
Sbjct: 330 LTELD---VSHNTKLKSLSCVNAHIQDFSSVGKI--PALNNNFEAEG 371
Score = 79.3 bits (196), Expect = 7e-16
Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 30/171 (17%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ LD + NKI+ L L R+ + I ++ L +D S N+
Sbjct: 172 LTTLDCSFNKITELDVS-----QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK 223
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYL----------------KTIEL 160
+ + +L + NP+TEL KL L + I
Sbjct: 224 LTEI---DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
Q + + + H T L L+ + L P L L L+
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNT 328
Score = 78.6 bits (194), Expect = 1e-15
Identities = 32/170 (18%), Positives = 51/170 (30%), Gaps = 27/170 (15%)
Query: 42 KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
D NF + +++E L L + NS I ++
Sbjct: 16 PDDNFASE--------VAAAFEMQATDTISEE-----QLATLTSLDCHNSSITDM--TGI 60
Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
+ LT L ++ + N I L N L L + N +T L L L +
Sbjct: 61 EKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCD 114
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
++ + + L LN N L + S L L N
Sbjct: 115 TNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHN---TQLTELDCHLN 158
Score = 78.2 bits (193), Expect = 2e-15
Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 20/177 (11%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
C T L + S + L + + + IY + G R++
Sbjct: 240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL-------IYFQAEGCRKIKELD 292
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
+ T L +D I L N +L LYLN +TEL K LK++
Sbjct: 293 VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTELDVSHNTK---LKSLSC 346
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-----NLKTLSLDGNP 212
+ I ++ + AL + + + + + L GNP
Sbjct: 347 VNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401
Score = 68.9 bits (169), Expect = 1e-12
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 11/131 (8%)
Query: 82 NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
N ++ + + L L +D ++ I + L L N I
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNI 76
Query: 142 TELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP 201
T L + L + ++ ++ + LT L LN + N+L L S P
Sbjct: 77 TTL---DLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQN---P 127
Query: 202 NLKTLSLDGNP 212
L L+ N
Sbjct: 128 LLTYLNCARNT 138
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 76.2 bits (188), Expect = 3e-17
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP + S + + G +T++C G+P P + W G+ +H+ E D
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD---- 60
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ + +V D G YT N G+ S +++
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 78.5 bits (194), Expect = 4e-17
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 8/129 (6%)
Query: 104 LTILVEVDLSDNQIAWLHQDTFLGN--DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
E+DL +I + LG D+ + + N I +L FP L LKT+ +
Sbjct: 18 AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVN 72
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHLR 220
+ +I + + L L L L N L L + +L L + NP H R
Sbjct: 73 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 132
Query: 221 SFRNWLLKS 229
+ + +
Sbjct: 133 LYVIYKVPQ 141
Score = 63.1 bits (154), Expect = 8e-12
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 110 VDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVH 169
V L+ I Q T + L L G I + L I+ +I +
Sbjct: 2 VKLTAELIEQAAQYTNAVR--DRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL- 57
Query: 170 KDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
D L L++L +N NR+ + E + P+L L L N
Sbjct: 58 -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98
Score = 58.5 bits (142), Expect = 3e-10
Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 33/161 (20%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD 114
+ LDL KI + E + L I ++ IR++ D F L L + +++
Sbjct: 19 VRDRELDLRGYKIPVI--ENLGA-TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 73
Query: 115 NQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI 174
N+I + + L L L N + EL +L L
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSLVELG-------------DLDP----------LA 110
Query: 175 HLTALESLNLNGN---RLKHLSESVFFPTPNLKTLSLDGNP 212
L +L L + N KH V + P ++ LD
Sbjct: 111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR--VLDFQK 149
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 76.7 bits (189), Expect = 4e-17
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 253 KAQEFACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS--FDLL 309
+ E P K +S + E G +V + C + P P + W N +++ ++ L
Sbjct: 8 HSHEHKRAPMFIYKPQSKKVLE-GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY 66
Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
++ G V++ + +V DAG YT A N G + LD
Sbjct: 67 QDNTG------RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 75.8 bits (187), Expect = 4e-17
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 259 CPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP + +RE G +V MS V G+P+P + WL N Q + EE EG
Sbjct: 4 APPTFKVSLMDQSVRE-GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG-- 60
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ + DAG YTC A N G E L+
Sbjct: 61 ---LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 79.1 bits (195), Expect = 5e-17
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 250 DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL 309
E + +V + G + ++C V+GDP P + WL N + L + L
Sbjct: 107 KQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNL 166
Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD--LPE 358
+ E G + T+ V+ D+G+Y +N G+ + + ++ +PE
Sbjct: 167 KFEAGR-----TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212
Score = 59.1 bits (143), Expect = 4e-10
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 7/89 (7%)
Query: 267 ESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSIT 325
+ I+ + + +V Y + + W NG + S +
Sbjct: 9 TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI------WLQ 62
Query: 326 LFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ T D G+Y + + + L
Sbjct: 63 INEPTPNDKGKYVMELFDGKTGHQKTVDL 91
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 76.0 bits (187), Expect = 6e-17
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP V E +R + V G+P PT+ WL NGQ L S +E + + E
Sbjct: 8 PPRVVSLEEPELRL---EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ T + G YT A+N G A+ I+ +
Sbjct: 65 GCLLFN--KPTHYNNGNYTLIAKNPLGTANQTINGHFLK 101
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 75.1 bits (185), Expect = 8e-17
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP + + G M V G P P + W LNG+ + + + E
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG--- 60
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
S+ V DAG Y C A+N G A+ + LD
Sbjct: 61 --LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 75.1 bits (185), Expect = 1e-16
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
P+ + + G M C V G P P + W L+G+ + S +L E G
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH-- 66
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
S+ + VT DAG YTC A N G S + L
Sbjct: 67 ----SLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 75.1 bits (185), Expect = 1e-16
Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
+ + PP V +G + C V G+P P ++W GQ L S
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA 64
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + + L DAG Y C A N G A ++
Sbjct: 65 DGAEH------GLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 77.5 bits (191), Expect = 1e-16
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLE 310
V+ P V G V++ G P+P I W ++ N+ + ++
Sbjct: 96 VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV 155
Query: 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+L + V DAG Y A+N G + LD
Sbjct: 156 TRSFTSLVFPN------GVERKDAGFYVVCAKNRFGIDQKTVELD 194
Score = 72.1 bits (177), Expect = 1e-14
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
A P+ + + N T+ C V G P+P + W G+ + +E
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + +VTD DA Y A N G+ SG SL
Sbjct: 62 H----QLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 80.0 bits (197), Expect = 2e-16
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 239 TEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG 298
+ + + E + +V + G + ++C V+GDP P + WL N
Sbjct: 201 YDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE 260
Query: 299 QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD--L 356
+ L + L+ E G + T+ V+ D+G+Y +N G+ + + ++ +
Sbjct: 261 KALASDDHCNLKFEAGR-----TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
Query: 357 PE 358
PE
Sbjct: 316 PE 317
Score = 61.1 bits (148), Expect = 3e-10
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEG 314
+ P+ S + NV + C V E I+W + + + + + ++G
Sbjct: 3 DPFTGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVD--EKHDFKDG 59
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ + + DAG Y ++ RG + L
Sbjct: 60 IC------TLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 93
Score = 59.9 bits (145), Expect = 6e-10
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 6/95 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
++ + + A G S Y + + W NG + S
Sbjct: 108 KIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQI--- 164
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + T D G+Y + + + L
Sbjct: 165 ---WLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 196
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 76.3 bits (188), Expect = 2e-16
Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 4/130 (3%)
Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
+ + E+ L + + + L+ L L + + PKLP LK +EL
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLEL 78
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHL 219
+I L L LNL+GN+LK +S LK+L L
Sbjct: 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY 138
Query: 220 RSFRNWLLKS 229
R LL
Sbjct: 139 RESVFKLLPQ 148
Score = 62.1 bits (151), Expect = 1e-11
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 31/162 (19%)
Query: 54 DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
+ ++ L L+N K + E + +NL+ + L N G+ V L L +++LS
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79
Query: 114 DNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDAL 173
+N+I L L L+GN + ++ L+ L
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS-------------TLEP----------L 116
Query: 174 IHLTALESLNLNGNRLKHLS---ESVFFPTPNLKTLSLDGNP 212
L L+SL+L + +L+ ESVF P L LDG
Sbjct: 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT--YLDGYD 156
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 75.3 bits (185), Expect = 3e-16
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 233 SHPLSCTEPGMLQTK--HWDDVKAQEFACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPE 289
S P S ++ + ++V ++ P T M + E G C V G P+
Sbjct: 12 SSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVE-GSAARFDCKVEGYPD 70
Query: 290 PTILWLLNGQVLHNSS-FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
P ++W + + S F + +EEG+ S+T+ V D +YTC A N G A
Sbjct: 71 PEVMWFKDDNPVKESRHFQIDYDEEGNC------SLTISEVCGDDDAKYTCKAVNSLGEA 124
Query: 349 S 349
+
Sbjct: 125 T 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 81.0 bits (199), Expect = 3e-16
Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 8/167 (4%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ L + Y + K++ + + S + + + L+
Sbjct: 395 LDPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452
Query: 117 IAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
+ L L + L L+ N + L L L+ ++ + +V D + +L
Sbjct: 453 LTVLCHLEQLLL--VTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV--DGVANL 507
Query: 177 TALESLNLNGNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCDCHLRSF 222
L+ L L NRL+ + P L L+L GN C + ++
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554
Score = 59.8 bits (144), Expect = 1e-09
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+ LDL++N++ L L L+ + ++ + V D L L E+ L +N+
Sbjct: 465 VTHLDLSHNRLRALPPA---LAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNR 519
Query: 117 IAWLHQDTFLGN-DRLKVLYLNGNPITELR------AGQFPKLPYLKT 157
+ L + RL +L L GN + + A P + + T
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 76.0 bits (187), Expect = 4e-16
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP +++ + A G +T SC G PEP I W NG+++ + +L+
Sbjct: 96 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--- 152
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+T+ N+ + D G Y C A N G + L
Sbjct: 153 -----ELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Score = 66.7 bits (163), Expect = 6e-13
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 7/90 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
S + G + + C V P P + WL + + + S + + L
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL-- 59
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ N+ D G Y C
Sbjct: 60 -----QILNINKSDEGIYRCEGRVEARGEI 84
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 75.9 bits (187), Expect = 4e-16
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 254 AQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEE 313
A++ P +T V T C V P+P I W N ++ E
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN 60
Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
G L T+ +V D D G Y C A N G A
Sbjct: 61 GQLL-------TILSVEDSDDGIYCCTANNGVGGA 88
Score = 68.6 bits (168), Expect = 1e-13
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
P +T V G + C G+P+P++ W+ L +S +LE
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG------ 153
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
S+ + NV DAG+Y C A+N G A
Sbjct: 154 ----SLRIHNVQKEDAGQYRCVAKNSLGTAY 180
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 72.8 bits (179), Expect = 5e-16
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP + + G + C GDP P I WL G +E+G
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG----- 62
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ + N+ D G YTC A + G S L
Sbjct: 63 ---TLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 74.8 bits (185), Expect = 5e-16
Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 12/160 (7%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHRDTFKYLTILVEVDLS 113
+ L +++ L +G L ++ + + + L ++
Sbjct: 4 PEKSKLQEIYQELTRLKAA----VGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEI 58
Query: 114 DNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDA 172
++ L +G L +T L+A +LP ++ + ++ + K A
Sbjct: 59 YQELTRLKAA--VGELPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIYQELTEL-KAA 114
Query: 173 LIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
+ L L L L +V +
Sbjct: 115 VGELPEKSKLQEIYQELTQLKAAVGELP-DQSKQQQIYQE 153
Score = 67.9 bits (167), Expect = 2e-13
Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 13/156 (8%)
Query: 45 NFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHRDTF 101
T L + + + L +++ L +G L ++ + +
Sbjct: 15 ELTRLKAAVGELPEKSKLQEIYQELTRLKAA----VGELPEKSKLQEIYQELTRLK-AAV 69
Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIEL 160
L ++ ++ L +G L +TEL+A +LP ++
Sbjct: 70 GELPEKSKLQEIYQELTRLKAA--VGELPEKSKLQEIYQELTELKAA-VGELPEKSKLQE 126
Query: 161 QHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESV 196
+ ++ + K A+ L L L +
Sbjct: 127 IYQELTQL-KAAVGELPDQSKQQQIYQELTDLKTAF 161
Score = 59.8 bits (146), Expect = 9e-11
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 6/109 (5%)
Query: 104 LTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
L ++ ++ L +G L +T L+A +LP ++ +
Sbjct: 3 LPEKSKLQEIYQELTRLKAA--VGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIY 59
Query: 163 CQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
++ + K A+ L L L L +V L
Sbjct: 60 QELTRL-KAAVGELPEKSKLQEIYQELTRLKAAVGELP-EKSKLQEIYQ 106
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 72.7 bits (179), Expect = 7e-16
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 256 EFACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
P +T++ S + G N V P + W NG L SS G
Sbjct: 4 TLDHAPRITLRMRSHRVPC-GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+++ + + D+G Y N +G AS
Sbjct: 63 ------VLTLEILDCHTDDSGTYRAVCTNYKGEAS 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 79.3 bits (196), Expect = 8e-16
Identities = 31/170 (18%), Positives = 67/170 (39%), Gaps = 22/170 (12%)
Query: 42 KDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTF 101
++ + L LD L+LNN +S L + +L+ + + + E+ +
Sbjct: 58 REMAVSRLRDCLDRQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELP-ELP 110
Query: 102 KYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQ 161
+ L L+ + + ++ L L+ L ++ N + +L + +LK I++
Sbjct: 111 QSLKSLLVDNNNLKALSDLP-------PLLEYLGVSNNQLEKL--PELQNSSFLKIIDVD 161
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ + + +LE + N+L+ L E P L + D N
Sbjct: 162 NNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNN 205
Score = 77.7 bits (192), Expect = 2e-15
Identities = 29/167 (17%), Positives = 67/167 (40%), Gaps = 23/167 (13%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
++LP ++ L + N ++ L + L +L + ++
Sbjct: 82 GLSSLPELP-PHLESLVASCNSLTELPELPQS---LKSLLVDNNNLKALSDL-------P 130
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
+L + +S+NQ+ L + LK++ ++ N + +L P L+ I + Q
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSF--LKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQ 184
Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
+ + + L +L L ++ + N LK L + +L+++ N
Sbjct: 185 LEELPE--LQNLPFLTAIYADNNSLKKLPDLPL----SLESIVAGNN 225
Score = 74.3 bits (183), Expect = 3e-14
Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 37/184 (20%)
Query: 45 NFTALPSTLD-SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKY 103
LP + + + +NN + L L+L+ I N+ + E+ +
Sbjct: 184 QLEELPELQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILEEL--PELQN 235
Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAG---------------Q 148
L L + +N + L + L+ L + N +T+L
Sbjct: 236 LPFLTTIYADNNLLKTL--PDLPPS--LEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 291
Query: 149 FPKLPY-LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLS 207
+LP L + +I S+ +LE LN++ N+L L P L+ L
Sbjct: 292 LSELPPNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELPALP----PRLERLI 343
Query: 208 LDGN 211
N
Sbjct: 344 ASFN 347
Score = 64.6 bits (158), Expect = 3e-11
Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 34/182 (18%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
F+ L + + L+ ++N+I L +L+ + + N+ + E+ L
Sbjct: 288 IFSGLSELPPN-LYYLNASSNEIRSLCDL------PPSLEELNVSNNKLIELP-ALPPRL 339
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITEL--------------RAGQFP 150
L S N +A + N LK L++ NP+ E + P
Sbjct: 340 ERL---IASFNHLAEV--PELPQN--LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392
Query: 151 KLPY-LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLD 209
+LP LK + ++ + ++E L +N R+ E T L+ +
Sbjct: 393 ELPQNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448
Query: 210 GN 211
+
Sbjct: 449 HH 450
Score = 61.9 bits (151), Expect = 2e-10
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 30/169 (17%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
T LP S + LD++ N S L++ NL + ++ IR +
Sbjct: 268 YLTDLPELPQS-LTFLDVSENIFSGLSEL------PPNLYYLNASSNEIRSL----CDLP 316
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY-LKTIELQHC 163
L E+++S+N++ L L+ L + N + E+ P+LP LK + +++
Sbjct: 317 PSLEELNVSNNKLIEL--PALPPR--LERLIASFNHLAEV-----PELPQNLKQLHVEYN 367
Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
+ ++E L +N + L + E NLK L ++ NP
Sbjct: 368 PLREFPDI----PESVEDLRMN-SHLAEVPELP----QNLKQLHVETNP 407
Score = 61.9 bits (151), Expect = 2e-10
Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 30/169 (17%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNS--------GIREVHRDTFKYLTI-- 106
+Q +++ ++ + EA + + Y S G E L
Sbjct: 13 LQEPLRHSSNLTEMPVEAEN---VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69
Query: 107 ---LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
E++L++ ++ L + + L+ L + N +TEL L L
Sbjct: 70 DRQAHELELNNLGLSSLPEL--PPH--LESLVASCNSLTELPEL-PQSLKSLLVDNNNLK 124
Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
+ + LE L ++ N+L+ L E + LK + +D N
Sbjct: 125 ALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNS 164
Score = 50.4 bits (121), Expect = 1e-06
Identities = 16/138 (11%), Positives = 46/138 (33%), Gaps = 28/138 (20%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
LP+ ++ L + N ++ + + NL++++++ + +RE D + +
Sbjct: 328 KLIELPALPPR-LERLIASFNHLAEVPEL------PQNLKQLHVEYNPLREFP-DIPESV 379
Query: 105 TI----------------LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ 148
L ++ + N + + ++ L +N + +
Sbjct: 380 EDLRMNSHLAEVPELPQNLKQLHVETNPLREF--PDIPES--VEDLRMNSERVVDPYEFA 435
Query: 149 FPKLPYLKTIELQHCQIH 166
L+ +H H
Sbjct: 436 HETTDKLEDDVFEHHHHH 453
Score = 42.7 bits (101), Expect = 3e-04
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 18/99 (18%)
Query: 126 LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ--------IHSVHKDALIHL- 176
+ N L+ + + +TE+ + + + + A+ L
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 177 ----TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
L LN L L E P+L++L N
Sbjct: 67 DCLDRQAHELELNNLGLSSLPELP----PHLESLVASCN 101
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 75.1 bits (185), Expect = 8e-16
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEE 313
+ PPN + + G V + V G P P + + +G + +S F + +E +
Sbjct: 98 KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157
Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+L + D+G Y+ A N G A+ L
Sbjct: 158 LYSL-------LIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 69.0 bits (169), Expect = 1e-13
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
P T V+ G T ++ G P P + W +GQV+ S+ +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG--- 61
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+T+ VT ++G Y+ A N G A+ L
Sbjct: 62 --RAKLTIPAVTKANSGRYSLKATNGSGQATSTAEL 95
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 72.0 bits (177), Expect = 9e-16
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 6/95 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + + +AG + G P+PT W + + L++ +
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT--- 58
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
SI + D+G Y +N G +
Sbjct: 59 ---SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 77.1 bits (190), Expect = 9e-16
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
PP K V G +V + C + G P + W + + L + + ++ E ++
Sbjct: 192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI- 250
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ NV D GEY C A N G+ + S+
Sbjct: 251 ------HILNVDSADIGEYQCKASNDVGSYTCVGSI 280
Score = 76.3 bits (188), Expect = 1e-15
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP +K V G + T C+V G I W + + + + E A
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA--- 61
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++T+ VT DAG+YTCYA N+ G S L
Sbjct: 62 ---TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 93
Score = 70.9 bits (174), Expect = 9e-14
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP K E I + + C + G PE +LW + + SS + E A
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA-- 155
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ ++N++ D+G+YTC A N G+AS SL
Sbjct: 156 ----VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 188
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 77.9 bits (192), Expect = 1e-15
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P +++ G + +SC V +P +I W + VL + L+
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG---- 155
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPE 358
+ + + + +D D G Y C A N G E L D+P
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS 197
Score = 67.5 bits (165), Expect = 4e-12
Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 14/129 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
N T E G VT+ C G+P P I W + D + + +
Sbjct: 7 LKNETTYE-------NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 320 KSV-SITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGI 378
S+ + +V D+G Y C A + G + L +I A + Y G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL---DIEYAPKFISNQTIYYSWEGN 116
Query: 379 SV---CVVS 384
+ C V
Sbjct: 117 PINISCDVK 125
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 71.5 bits (176), Expect = 1e-15
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P + + + + G+P PT +W +G+ + L E++G
Sbjct: 6 KPVIVTGLQDTTVSS-DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF-- 62
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + D+G YTC +N G+ S
Sbjct: 63 ----FLEIHKTDTSDSGLYTCTVKNSAGSVS 89
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 74.5 bits (183), Expect = 2e-15
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
N T + G +T SC G PEP I W NG+++ + +L+
Sbjct: 11 SFNATAER-------GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT----- 58
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL---PEI 359
+T+ N+ + D G Y C A N G + L + P I
Sbjct: 59 ---ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHI 98
Score = 68.3 bits (167), Expect = 2e-13
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P++ ++ E G VT+ C G+P P I W + D + + +
Sbjct: 95 QPHIIQLKNETTYE-NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 153
Query: 320 KSV-SITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
S+ + +V D+G Y C A + G + LD
Sbjct: 154 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 190
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 76.4 bits (188), Expect = 2e-15
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP +++ + A G +T SC G PEP I W NG+++ + +L+
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--- 248
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEI 359
+T+ N+ + D G Y C A N G + L
Sbjct: 249 -----ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHH 288
Score = 65.6 bits (160), Expect = 7e-12
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
S + G + + C V P P + WL + + + S + + L
Sbjct: 98 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ- 156
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353
+ N+ D G Y C A GEI
Sbjct: 157 ------ILNINKSDEGIYRCEGRV---EARGEID 181
Score = 62.5 bits (152), Expect = 7e-11
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
VTI S V G + +C G+PE + G+ + ++ + +E L
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL- 62
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
T++N DAG Y C A + +G
Sbjct: 63 ------TIYNANIEDAGIYRCQATDAKGQT 86
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 74.5 bits (183), Expect = 2e-15
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP T +GG + C GDP P I+W G+ + N F+++E ++G
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS---- 61
Query: 320 KSVSITLFNVTDL-DAGEYTCYAENIRGNASGEISL 354
+ + + D Y C A N G S L
Sbjct: 62 -GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRL 96
Score = 66.4 bits (162), Expect = 1e-12
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
+ Q P + + + + E TM C G+P+P I W + + S+ + +
Sbjct: 100 REDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
+ E ++ + + D G+Y C A N G
Sbjct: 160 QLRS---ESIGALQIEQSEESDQGKYECVATNSAGTR 193
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 71.2 bits (175), Expect = 2e-15
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 259 CPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
P+ + + + E G + + C V G P P I WLLNGQ + + E G A
Sbjct: 10 VAPSFSSVLKDCAVIE-GQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVA- 64
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + + D G YTC AEN G S +
Sbjct: 65 -----ELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 71.2 bits (175), Expect = 2e-15
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS--FDLLEEEEGDA 316
P +K + I E G VT +C V G+P+P I W +G+ + S + + + +G
Sbjct: 8 APFFEMKLKHYKIFE-GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG-- 64
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ S+ T D G YT A N +G S
Sbjct: 65 ----TCSLHTTASTLDDDGNYTIMAANPQGRIS 93
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 75.7 bits (186), Expect = 3e-15
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 260 PPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP V ++S+V A G +VT+ C G PEPT+ W +G+ + N D +E
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEED----DEKHIF 249
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ S +T+ NV D EY C AEN G I L
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Score = 70.7 bits (173), Expect = 2e-13
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 7/97 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ + G + + C V PTI+W G+ + + L
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL-- 157
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ + D G Y C + + +
Sbjct: 158 -----QIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Score = 55.7 bits (134), Expect = 1e-08
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWL-LNGQVL--HNSSFDLLEEEEGDA 316
V I S G + C V GD + I W NG+ L + ++ ++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPE 358
++T++N DAG Y C G +++ + +
Sbjct: 63 ------TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 77.7 bits (191), Expect = 4e-15
Identities = 41/246 (16%), Positives = 80/246 (32%), Gaps = 52/246 (21%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
N ++LP L I VL++ N + L + +L+ + ++ + + + L
Sbjct: 70 NLSSLPDNLPPQITVLEITQNALISLPEL------PASLEYLDACDNRLSTL-PELPASL 122
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
L D+ +NQ+ L L+ + + N +T L L+ + +++ Q
Sbjct: 123 KHL---DVDNNQLTML--PELPAL--LEYINADNNQLTMLPE----LPTSLEVLSVRNNQ 171
Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT------------------------ 200
+ + + +LE+L+++ N L+ L
Sbjct: 172 LTFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL 227
Query: 201 --PNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLS--CTEPGMLQTKHWDDVKAQE 256
T+ L+ NP +R + Y P G T H A
Sbjct: 228 SLDPTCTIILEDNPL--SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285
Query: 257 FACPPN 262
P N
Sbjct: 286 AWFPEN 291
Score = 75.0 bits (184), Expect = 2e-14
Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 27/182 (14%)
Query: 31 KWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN 90
KW ++ + L L + L LN +S L + + +
Sbjct: 35 KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPP-----QITVLEITQ 89
Query: 91 SGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP 150
+ + + + L L D DN+++ L + + LK L ++ N +T L P
Sbjct: 90 NALISLP-ELPASLEYL---DACDNRLSTLPEL--PAS--LKHLDVDNNQLTML-----P 136
Query: 151 KLP-YLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLD 209
+LP L+ I + Q+ + + T+LE L++ N+L L E +L+ L +
Sbjct: 137 ELPALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLPELP----ESLEALDVS 188
Query: 210 GN 211
N
Sbjct: 189 TN 190
Score = 68.5 bits (167), Expect = 3e-12
Identities = 31/217 (14%), Positives = 74/217 (34%), Gaps = 25/217 (11%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
+ LP S ++ LD++NN+++ L + L+ I N+ + + +
Sbjct: 111 RLSTLPELPAS-LKHLDVDNNQLTMLPEL------PALLEYINADNNQLTML----PELP 159
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRA--GQFPKLPYLKTI-ELQ 161
T L + + +NQ+ +L + + L+ L ++ N + L A + + +
Sbjct: 160 TSLEVLSVRNNQLTFLPE--LPES--LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215
Query: 162 HCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRS 221
+I + + ++ L ++ L N LS + P
Sbjct: 216 ENRITHI-PENILSLDPTCTIILEDNP---LSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271
Query: 222 FRN--WLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQE 256
+N + + + + W + +E
Sbjct: 272 QQNTLHRPLADAVTAWFPENKQSDVSQ-IWHAFEHEE 307
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 70.8 bits (174), Expect = 4e-15
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P +T E+ G ++ +SC G+P P I+W + + L S +L++
Sbjct: 10 APTITGNLENQTTSI-GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR---- 64
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++T+ V D G YTC A ++ G A E
Sbjct: 65 ----NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 96
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 77.6 bits (191), Expect = 4e-15
Identities = 40/217 (18%), Positives = 80/217 (36%), Gaps = 30/217 (13%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL 104
T+LP +Q L +++N+++ L L +++ N+ + +
Sbjct: 172 QLTSLPMLPSG-LQELSVSDNQLASLPTL------PSELYKLWAYNNRLTSLP----ALP 220
Query: 105 TILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQ 164
+ L E+ +S N++ L LK L ++GN +T L L ++ + Q
Sbjct: 221 SGLKELIVSGNRLTSL--PVLPSE--LKELMVSGNRLTSLPML----PSGLLSLSVYRNQ 272
Query: 165 IHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHL----- 219
+ + ++LIHL++ ++NL GN L + + + P
Sbjct: 273 LTRL-PESLIHLSSETTVNLEGNPLSERTLQALR---EITSAPGYSGPIIRFDMAGASAP 328
Query: 220 RSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQE 256
R R L + + P EP W ++
Sbjct: 329 RETRALHLAAADWLVPAREGEP--APADRWHMFGQED 363
Score = 74.5 bits (183), Expect = 3e-14
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 26/165 (15%)
Query: 47 TALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI 106
T LP L + I L + +N ++ L L+ + + + + + L
Sbjct: 53 TTLPDCLPAHITTLVIPDNNLTSLPAL------PPELRTLEVSGNQLTSLP-VLPPGLLE 105
Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH 166
L + L L++ GN +T L P L+ + + Q+
Sbjct: 106 LSIFSNPLTHL-----PALPSG--LCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLA 154
Query: 167 SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
S+ + L L N+L L L+ LS+ N
Sbjct: 155 SLPAL----PSELCKLWAYNNQLTSLPMLP----SGLQELSVSDN 191
Score = 66.8 bits (163), Expect = 1e-11
Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 25/165 (15%)
Query: 47 TALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTI 106
+ + L++ VL++ + ++ L ++ + + ++ + + L
Sbjct: 32 QKMRACLNNGNAVLNVGESGLTTLPDCLPA-----HITTLVIPDNNLTSL-PALPPELRT 85
Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIH 166
L ++S NQ+ L G L + + L L + + Q+
Sbjct: 86 L---EVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT 134
Query: 167 SVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
S+ L+ L+++ N+L L L L N
Sbjct: 135 SLPV----LPPGLQELSVSDNQLASLPALP----SELCKLWAYNN 171
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 74.2 bits (182), Expect = 4e-15
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLH-----NSS 305
DV + P + GG+V C VY D +P I W+ + + +
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168
Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
L + + + LFNVT+ DAGEY C N G A+ L
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218
Score = 69.9 bits (171), Expect = 1e-13
Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 260 PPNVTIKESM----VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
P T E M A V C G+P PT+ WL NG+ +
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
S+ + +V D G YTC EN G+ + LD
Sbjct: 75 -----HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 70.6 bits (173), Expect = 5e-15
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP + G +SC G P PTILW +G ++ + + E G
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG----- 62
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + D G YTC A G A+ +
Sbjct: 63 ---VLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 71.1 bits (174), Expect = 5e-15
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE-EEEGDALF 318
P +V + + + + V G P P++ WL NG VL+ +SF E E
Sbjct: 4 PASVQLHTA----VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ + L T ++ G YT A N G AS I +
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 72.3 bits (178), Expect = 6e-15
Identities = 52/207 (25%), Positives = 75/207 (36%), Gaps = 61/207 (29%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C C T++P+ + S L+L +NK+ L F
Sbjct: 1 CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDK------ 50
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRL---KVLYLNGNP 140
LT L ++ LS NQI L F D+L +LYL+ N
Sbjct: 51 --------------------LTQLTKLSLSQNQIQSLPDGVF---DKLTKLTILYLHENK 87
Query: 141 ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT 200
+ L G F K LT L+ L L+ N+LK + + +F
Sbjct: 88 LQSLPNGVFDK------------------------LTQLKELALDTNQLKSVPDGIFDRL 123
Query: 201 PNLKTLSLDGNPWCCDCH-LRSFRNWL 226
+L+ + L NPW C C + WL
Sbjct: 124 TSLQKIWLHTNPWDCSCPRIDYLSRWL 150
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 72.4 bits (178), Expect = 7e-15
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + + V + G +SC + G P P I W G+ L S + +
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH--- 63
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
++T+ D G YTC A N G
Sbjct: 64 ---TLTVMTEEQEDEGVYTCIATNEVGEVE 90
Score = 70.9 bits (174), Expect = 3e-14
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
P +KE G + + G P P + W ++L NS + E L
Sbjct: 104 HPGYPLKEKYYGAV-GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHL- 161
Query: 319 EKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLD 355
+ NV AG+Y N+ G + ++
Sbjct: 162 ------VMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 73.4 bits (180), Expect = 7e-15
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL------HNS 304
DV + P + G +V C VY D +P I WL + +V +
Sbjct: 105 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 164
Query: 305 SFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ + + E V + L NV++ D GEY C A N G A L
Sbjct: 165 PYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215
Score = 71.9 bits (176), Expect = 3e-14
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310
D A + P + K V A V C G+P P+I WL NG+
Sbjct: 8 DTGAPYWTRPERMDKKLLAV--PAANTVRFRCPAAGNPTPSISWLKNGREFRGEH----- 60
Query: 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
G L + S+ + +V D G YTC EN G+ +LD+ E
Sbjct: 61 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 108
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 76.9 bits (189), Expect = 8e-15
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEE 313
PP + E G +V + C G+P P I W L+G+ + N+ + + +
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483
Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ ++IT +V D G Y C A++ G A L+
Sbjct: 484 VNGDVVSYLNIT--SVHANDGGLYKCIAKSKVGVAEHSAKLN 523
Score = 75.0 bits (184), Expect = 3e-14
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 19/128 (14%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + I + G +C G+P T+ W+ +G+ + +S L
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL----------- 391
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGIS 379
+ +V D G Y C+ N R +A L L + + + G S
Sbjct: 392 -----RIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPS 446
Query: 380 V---CVVS 384
V CV
Sbjct: 447 VFLKCVAG 454
Score = 66.5 bits (162), Expect = 2e-11
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
P + + G +T+ C V G P I W L+GQ +
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG----- 673
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEI 359
+ +T+ V AG +TC+A N+ G+ L P
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRW 717
Score = 65.7 bits (160), Expect = 3e-11
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP ++ + G + + C G P+P + W DL + +
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR---V 770
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ ++ + N+ + G Y C A N G+
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGL 800
Score = 65.0 bits (158), Expect = 4e-11
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 4/96 (4%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
K M + + C G P P W + +L D + +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLN----DRVKQ 303
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
S ++ + + D+G+Y C N G S E L
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 339
Score = 63.8 bits (155), Expect = 9e-11
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 15/129 (11%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + E I G + ++C V G P +I+W + + L + G
Sbjct: 527 LPYIRQMEKKAIVA-GETLIVTCPVAGYPIDSIVWERDNRALPINR-KQKVFPNG----- 579
Query: 320 KSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGI 378
++ + NV + D YTC A+N G ++ SL++ + L + +G
Sbjct: 580 ---TLIIENVERNSDQATYTCVAKNQEGYSA-RGSLEVQVMVLPRIIPFAFEEGPAQVGQ 635
Query: 379 SV---CVVS 384
+ C V
Sbjct: 636 YLTLHCSVP 644
Score = 54.6 bits (131), Expect = 7e-08
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P + + + + C G+P P I+W+ + L + L
Sbjct: 38 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 97
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
++ A Y C A N G+
Sbjct: 98 FPPFRAE-DYRQEVHAQVYACLARNQFGSI 126
Score = 49.9 bits (119), Expect = 2e-06
Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 8/98 (8%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYV---YGDPEPTILWLLNGQVLHNSSFDLLEEE 312
+ G + + C + D + W + + + E
Sbjct: 134 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN----YFPGAEY 189
Query: 313 EGDALFEKSVSITLFNVTDLDA-GEYTCYAENIRGNAS 349
+G L S + + V D Y C ++ +
Sbjct: 190 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 227
Score = 30.3 bits (68), Expect = 2.5
Identities = 3/31 (9%), Positives = 8/31 (25%)
Query: 328 NVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
N + A G+ + + +
Sbjct: 5 NERLKWLMLFAAVALIACGSQTLAANPPDAD 35
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 70.0 bits (172), Expect = 8e-15
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + AG +V + V G T W+ + + S +E E +
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS--- 63
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+T+ G YT EN G+ +++L
Sbjct: 64 ---KLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 69.6 bits (171), Expect = 8e-15
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDAL 317
P + + +S + + G + V G P+P W NG + S E+
Sbjct: 5 APKIFERIQSQTVGQ-GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC- 62
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + +VT D+ A NI G S
Sbjct: 63 -----ELVIRDVTGEDSASIMVKAINIAGETS 89
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 72.2 bits (177), Expect = 9e-15
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P ++ ++ V G NVT+ C+ G+P P I W + + +++ G L
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE---ISTSGAVL-- 167
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+FN+ D G Y C AENIRG + +
Sbjct: 168 -----KIFNIQLEDEGIYECEAENIRGKDKHQARI 197
Score = 46.4 bits (110), Expect = 5e-06
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDAL 317
P V +KE G + + C + WLLN + + ++ +
Sbjct: 15 RPEVRVKE-------GKGMVLLCDPPYHFPDDLSYRWLLNEFPVF------ITMDKRRFV 61
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + ++ + NV D G Y+C+ + S
Sbjct: 62 SQTNGNLYIANVEASDKGNYSCFVSSPSITKS 93
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 72.3 bits (177), Expect = 1e-14
Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF---DLLEEEEGDA 316
V E V V +SC G P + W + + E
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
F + IT +VT D G YTC GN+ GE+ + L
Sbjct: 64 TFLPT-GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102
Score = 69.6 bits (170), Expect = 1e-13
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP+ G ++C G P W +G V+ + +
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166
Query: 319 EKSVSI-TLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ ++ D GEY+C A N G ++
Sbjct: 167 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 76.3 bits (187), Expect = 1e-14
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P +T G ++ +SC G+P P I+W + + L S +L++
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR----- 720
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++T+ V D G YTC A ++ G A E
Sbjct: 721 ---NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
Score = 67.1 bits (163), Expect = 1e-11
Identities = 31/133 (23%), Positives = 45/133 (33%), Gaps = 22/133 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ ES+V G V + G P P I W NG L ++ + G L
Sbjct: 330 VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH----TIKAGHVL-- 383
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL-----PEINLATTLSKTDSWYML 374
T+ V++ D G YT N + L P+I + +S DS
Sbjct: 384 -----TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS---Y 435
Query: 375 VLGISV---CVVS 384
G + C V
Sbjct: 436 QYGTTQTLTCTVY 448
Score = 61.7 bits (149), Expect = 5e-10
Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 7/132 (5%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTI--LWLLNGQVLHNSSF--DLLEEEEGD 315
V + G + ++C + I W + L+ + G
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLV 375
+ + ++T+ VT D G YTC A + + + E S +S
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT 343
Query: 376 LGISV---CVVS 384
+G V
Sbjct: 344 VGERVRIPAKYL 355
Score = 60.5 bits (146), Expect = 1e-09
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 15/111 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG-QVLHNSSFDLLEEEEGDALF 318
P +T++ M E +V++ C + W G Q L +L +
Sbjct: 550 GPEITLQPDMQPTE-QESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDT 608
Query: 319 EKSVSITLF-------------NVTDLDAGEYTCYAENIRGNASGEISLDL 356
++ T+F N + D G+Y C A++ + + L
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL 659
Score = 57.8 bits (139), Expect = 6e-09
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P ++I++ ++ +A + ++C G + LW N +
Sbjct: 31 LPRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSDG-----L 83
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
++T+ V D G Y C+ + + +
Sbjct: 84 FCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYR 122
Score = 47.1 bits (111), Expect = 1e-05
Identities = 23/120 (19%), Positives = 30/120 (25%), Gaps = 31/120 (25%)
Query: 273 EAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEK----------- 320
+ G T++C VY P P I W + + E+
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGN 495
Query: 321 ----------------SVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEINL 361
TL + Y C A N G IS PEI L
Sbjct: 496 KIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITL 555
Score = 47.1 bits (111), Expect = 2e-05
Identities = 10/105 (9%), Positives = 26/105 (24%), Gaps = 11/105 (10%)
Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL--NGQVLHNSSFDLL 309
F + + V + C L + + + +
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179
Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ ++G T+ + AG C A+ + + +
Sbjct: 180 DSKKG---------FTIPSYMISYAGMVFCEAKINDESYQSIMYI 215
Score = 35.9 bits (82), Expect = 0.047
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 332 LDAGEYTCYAENIRGNASGEISLDLPEIN 360
L + C +SLDLP ++
Sbjct: 7 LAVALWLCVETRAASVGLPSVSLDLPRLS 35
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 71.8 bits (176), Expect = 2e-14
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
V P + ++ E G V ++C V+ P TI W +GQ+L +S++ ++
Sbjct: 11 VPRGSHMYAPKLQGPVAVYTWE-GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKI 69
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + + ++ D G Y C A N G S E L
Sbjct: 70 YNTP----SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 68.6 bits (168), Expect = 2e-14
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 260 PPNVTIKESMVIRE----AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
P T E M R A V C G+P PT+ WL NG+ +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
S+ + +V D G YTC EN G+ + LD
Sbjct: 64 -----HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 73.9 bits (181), Expect = 2e-14
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL----LNGQVLHNSS- 305
DV + P + G +V C VY D +P I WL +NG +
Sbjct: 213 DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 272
Query: 306 --FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+L+ + ++ ++L NVT DAGEYTC A N G + L
Sbjct: 273 PYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
Score = 70.0 bits (171), Expect = 3e-13
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310
D A + P + K V A V C G+P P+I WL NG+
Sbjct: 116 DTGAPYWTRPERMDKKLLAVP--AANTVRFRCPAAGNPTPSISWLKNGREFRGE-----H 168
Query: 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
G L + S+ + +V D G YTC EN G+ +LD
Sbjct: 169 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 213
Score = 55.4 bits (133), Expect = 2e-08
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P ++ ++ +G V +SC G P +W+ +G L S L+ +
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQ------ 61
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + N + D+G Y+C +
Sbjct: 62 ----RLQVLNASHEDSGAYSCRQRLTQRVLC 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 73.4 bits (180), Expect = 2e-14
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 15/178 (8%)
Query: 43 DANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN----SGIREVHR 98
DA L L ++VL + + E + L + L + +
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV--FPALSTLDLSDNPELGERGLISA 194
Query: 99 DTFKYLTILVEVDLSDNQIAWL---HQDTFLGNDRLKVLYLNGNPITEL-RAGQFPKLPY 154
L + L + + +L+ L L+ N + + A
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254
Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
L ++ L + V K L L+L+ NRL P + LSL GNP
Sbjct: 255 LNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGNP 307
Score = 68.4 bits (167), Expect = 1e-12
Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 14/158 (8%)
Query: 43 DANFTALPSTLD---SDIQVLDLNNNKISYLT--KEAFKSIGLLNLQRIYLKNSGIRE-- 95
A+ + LDL++N A + LQ + L+N+G+
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217
Query: 96 -VHRDTFKYLTILVEVDLSDNQIAWL-HQDTFLGNDRLKVLYLNGNPITELRAGQFPKLP 153
V L +DLS N + + +L L L+ + ++ G KL
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL- 276
Query: 154 YLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
++L + ++ + L + +L+L GN
Sbjct: 277 --SVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310
Score = 64.9 bits (158), Expect = 1e-11
Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 20/169 (11%)
Query: 46 FTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL--NLQRIYLKNSGIREVHRDTFKY 103
L D+ +L+L N + + L L+ + + + + +
Sbjct: 112 PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171
Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
L +DLSDN LG L I+ L +FP L L
Sbjct: 172 FPALSTLDLSDNPE--------LGERGL---------ISALCPLKFPTLQVLALRNAGME 214
Query: 164 QIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTP-NLKTLSLDGN 211
V L+ L+L+ N L+ + + P L +L+L
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263
Score = 61.5 bits (149), Expect = 2e-10
Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 19/205 (9%)
Query: 24 CPDTCRCKWTLGK----KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIG 79
++C C ++ K + C A L S +L + + + I
Sbjct: 9 DEESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEAD--LGQFTDIIK 66
Query: 80 LLNLQRIYLKNSGI-REVHRDTFKYLTI--LVEVDLSDNQIAWLH--QDTFLGNDRLKVL 134
L+L+R+ ++ + I + + L I L E+ L + ++ L +L
Sbjct: 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126
Query: 135 YLNGNPITELRAG----QFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL- 189
L A Q P LK + + + + + AL +L+L+ N
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186
Query: 190 --KHLSESVFFPT-PNLKTLSLDGN 211
+ L ++ P L+ L+L
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNA 211
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 69.3 bits (169), Expect = 2e-14
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
+ R GG+V + C G P P I W GQ ++ L + D
Sbjct: 17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 316 ALFEKSV-------SITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + +I++ + + D G Y C A N
Sbjct: 77 RVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNH 117
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 71.2 bits (174), Expect = 3e-14
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNG--QVLHNSSFDLLEEEEGDALF 318
+V +S V ++ ++C G P + W + D +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
S IT +VT D GEYTC G GE+S+ L
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99
Score = 70.8 bits (173), Expect = 3e-14
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP+ G ++C + G P W +G + + +
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163
Query: 319 EKSVSITL--FNVTDLDAGEYTCYAENIRGNASGEISLDL 356
S L VT D+GEY C A+N G A + +
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 74.5 bits (183), Expect = 4e-14
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP K V G +V + C + G P + W + + L + + E
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT--- 440
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
SI + NV D GEY C A N G+ + S+
Sbjct: 441 ---SIHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473
Score = 74.1 bits (182), Expect = 4e-14
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
+ E PP +K V G + T C+V G I W + + + +
Sbjct: 189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTL 248
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
E A ++T+ VT DAG+YTCYA N+ G S L
Sbjct: 249 VENTA------TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285
Score = 72.1 bits (177), Expect = 2e-13
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 9/128 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP V G +T+ C V G PE I W L ++ ++ + A
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL- 63
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGIS 379
+ V D GEYTC AEN G + L + E L + ++ LG
Sbjct: 64 -----VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFP 118
Query: 380 V---CVVS 384
V C ++
Sbjct: 119 VAFECRIN 126
Score = 71.8 bits (176), Expect = 3e-13
Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 9/133 (6%)
Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
+E PP+ K V G V C + G + W +G++L + +
Sbjct: 96 KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN 155
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYML 374
A ++ + G+Y C A N G AS L L E + L
Sbjct: 156 VA------TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDL 209
Query: 375 VLGISV---CVVS 384
LG S C V+
Sbjct: 210 ALGESGTFKCHVT 222
Score = 71.8 bits (176), Expect = 3e-13
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP K E I + + C + G PE +LW + + SS + E A
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA-- 347
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ ++N++ D+G+YTC A N G+AS SL
Sbjct: 348 ----VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 380
Score = 70.6 bits (173), Expect = 5e-13
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP K S + G V + + G ++ W + + S ++ +
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN---- 532
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ +AG+YTC +N G +L
Sbjct: 533 -IATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 67.8 bits (166), Expect = 4e-14
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 252 VKAQEFACPPNVTIKESM---VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL 308
V +E A PP + + + IR+ G + + G P P ++W G L S +
Sbjct: 13 VTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHV 72
Query: 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ + D+GEY + + I +
Sbjct: 73 RTS-------DFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 72.2 bits (177), Expect = 5e-14
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 15/108 (13%)
Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
+ P +I GGNV ++C G P P + W+ + L +
Sbjct: 200 RVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG---- 255
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEI 359
L D+ YTC A + G + LP+
Sbjct: 256 --------RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295
Score = 69.5 bits (170), Expect = 4e-13
Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
+ Q + PN+ + + + E TM C G+P+P I W + + S+ + +
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK 159
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG-NASGEISLDLPEINLATTLSKTDS 370
+ ++ + + + D G+Y C A N G S +L + N+A S
Sbjct: 160 QLRSG------ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPM 213
Query: 371 WYMLVLGISV---CVVS 384
+ ++ G +V CV
Sbjct: 214 SHEIMPGGNVNITCVAV 230
Score = 67.5 bits (165), Expect = 2e-12
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP + I +GG + C GDP+P + W G+ +++ F+ +E +E
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA---- 61
Query: 320 KSVSITLFNVTDL-DAGEYTCYAENIRGNASGEISL 354
+ + + D Y C A+N G + L
Sbjct: 62 -GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKL 96
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 67.0 bits (164), Expect = 5e-14
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 15/89 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ ++ + G + + C G P P W N L + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------- 48
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA 348
+ V G Y C+ N R +
Sbjct: 49 -KKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 67.1 bits (164), Expect = 6e-14
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ ++ GG VT++C V P P I W+ +G L +L
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVL---------- 59
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGN--ASGEISLDLPE 358
L + D G Y+C A + S +S+ + E
Sbjct: 60 -----ILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 67.6 bits (165), Expect = 7e-14
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP ++ ++ G + C++ P P I W VL + + E
Sbjct: 14 PPIISSTQTQHALH-GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 319 EKSVSITLFNVTDLD-AGEYTCYAENIRGNASGEISL 354
++T+ N+ D Y C A N G+ + I L
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 67.4 bits (165), Expect = 7e-14
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+V ++E G + T C + + W L+ LH + + ++ + G
Sbjct: 20 LEDVDVQE-------GSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPG----- 67
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+TL + D+G A + R +A+
Sbjct: 68 GYHVLTLRQLALKDSGTIYFEAGDQRASAA 97
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 69.8 bits (171), Expect = 7e-14
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE 311
+ A P +T + E G V M+C G+P P I W+ N + S+
Sbjct: 102 EGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN-PRYSL 160
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
++G + + N + D G+Y C AEN G
Sbjct: 161 KDG--------FLQIENSREEDQGKYECVAENSMGTEH 190
Score = 65.2 bits (159), Expect = 3e-12
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP + K GG + C GDP P+I+W NG+ + + E+ +
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA 348
+ D Y C AEN G+A
Sbjct: 66 LRIEPV---RAGRDDAPYECVAENGVGDA 91
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 72.3 bits (177), Expect = 9e-14
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 16/95 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + I + G +C G+P T+ W+ +G+ + +S L
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL----------- 355
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ +V D G Y C+ N R +A L
Sbjct: 356 -----RIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 63.0 bits (153), Expect = 9e-11
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + + + +++ C G P P+ W + +L D + +
Sbjct: 212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL----NDRVKQ 267
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
S ++ + + D+G+Y C N G S E L
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302
Score = 58.4 bits (141), Expect = 3e-09
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P + + + + C G+P P I+W+ + L + L
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISL 354
+ ++ A Y C A N G+ S ++ +
Sbjct: 63 FPPFRAEDYR-QEVHAQVYACLARNQFGSIISRDVHV 98
Score = 42.6 bits (100), Expect = 2e-04
Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 12/99 (12%)
Query: 257 FACPPNVTIKESMVIREAGGNVTMSCYV---YGDPEPTILWLLNGQVLHNSSFDLLEEEE 313
+ G + + C + D + W + + E
Sbjct: 100 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN------YFPGAE 153
Query: 314 GDALFEKSVSITLF--NVTDLDA-GEYTCYAENIRGNAS 349
D + S L V D Y C ++ +
Sbjct: 154 YDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 192
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 71.3 bits (174), Expect = 1e-13
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
NV++ + G N+T+ C V G+ W + + + + D +
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKES-GRLVEPVTDFLLDMPYH 239
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ + + D+G YTC + E ++++
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 45.5 bits (107), Expect = 2e-05
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 266 KESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSIT 325
+V+ ++C ++W Q + L T
Sbjct: 7 GPELVLN-VSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFSSVL-------T 54
Query: 326 LFNVTDLDAGEYTCYAENIRGNASGEIS 353
L N+T LD GEY C + RG + E
Sbjct: 55 LTNLTGLDTGEYFCTHNDSRGLETDERK 82
Score = 39.3 bits (91), Expect = 0.003
Identities = 11/93 (11%), Positives = 19/93 (20%), Gaps = 17/93 (18%)
Query: 252 VKAQEFACPPNVTIKESMVI-REAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE 310
+ + E + I +T+ C V DP+ +
Sbjct: 86 IFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-TDPQLVVTLHEKK------------ 132
Query: 311 EEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343
GD + Y C
Sbjct: 133 ---GDVALPVPYDHQRGFSGIFEDRSYICKTTI 162
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 72.2 bits (177), Expect = 1e-13
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + +I G + + C G+P+PT+ W++NG+ L ++ + E GD +
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTI-- 369
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
+ Y C N G + + ++
Sbjct: 370 -----IFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDV 404
Score = 65.7 bits (160), Expect = 1e-11
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
G ++ + C G P P I W G L + F K++ IT NV++
Sbjct: 235 LRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFEN-------FNKALRIT--NVSEE 285
Query: 333 DAGEYTCYAENIRGNASGEISL 354
D+GEY C A N G+ IS+
Sbjct: 286 DSGEYFCLASNKMGSIRHTISV 307
Score = 64.1 bits (156), Expect = 4e-11
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 260 PPNVTIKE-SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP +T + I + N+ + C G+P P+ W N + + + +
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEI 359
+ GEY C+A N G A S I L + +
Sbjct: 76 VIDFRSG--GRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS 115
Score = 46.4 bits (110), Expect = 2e-05
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 257 FACPPNVTIKESMVIR-EAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
+ P + + + G +T+ C G P P I W+ + + + G
Sbjct: 112 VSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG 171
Query: 315 DALFEKSVSITLFNVTDLDA-GEYTCYAENIRGNAS 349
D F NV D +Y+C A +
Sbjct: 172 DLYFS--------NVMLQDMQTDYSCNARFHFTHTI 199
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 68.7 bits (168), Expect = 1e-13
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ + G V ++C V G EP I W+ +G V+ N + E +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG- 60
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRG-NASGEISL 354
++L +V DAG Y C E+ S + L
Sbjct: 61 ---FLSLKSVERSDAGRYWCQVEDGGETEISQPVWL 93
Score = 60.2 bits (146), Expect = 9e-11
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 16/91 (17%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
P T++ + +SC G PEP TI+W + +
Sbjct: 98 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPS--------- 148
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
L + ++C A N++G AS
Sbjct: 149 ------VLNVTGVTQSTMFSCEAHNLKGLAS 173
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 70.7 bits (173), Expect = 1e-13
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP + ++ S ++R G + C + L G L + D ++
Sbjct: 186 PPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP---LNSDFQDNYYK 242
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEINL 361
K +++L V DAG Y+C A N G + ++ + +
Sbjct: 243 KVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHH 287
Score = 52.6 bits (126), Expect = 1e-07
Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 18/103 (17%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + ++ E G VT+ C G ++ W +
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPE-----------S 48
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEI 359
++T N T + G Y C S I L D
Sbjct: 49 PGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHS 91
Score = 47.6 bits (113), Expect = 5e-06
Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 11/99 (11%)
Query: 260 PPNVTIKESMVIR-EAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
P + + + G + C + + ++ + G
Sbjct: 88 PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--- 144
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAEN-IRGNASGEISLD 355
+ LD+ Y C R + S I L
Sbjct: 145 -----GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 71.4 bits (175), Expect = 2e-13
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PN + + +V C G P+PT WL NG L +E+
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG------- 347
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ + V DAG Y C AEN G L
Sbjct: 348 ---TLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Score = 62.9 bits (153), Expect = 9e-11
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL-LNGQVLHNSSFDLLEEEEGDALF 318
P V E G V + C+ G+P PTILW +G+ + +
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKS-------- 256
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + + N DAG Y C AEN RG + L
Sbjct: 257 --NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Score = 60.2 bits (146), Expect = 6e-10
Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 14/103 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P +V V +SC V G+P+P I W LNG + +G
Sbjct: 12 PSHVMFPLD----SEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG----- 62
Query: 320 KSVSITLFNVT-DLDAGEYTCYAENIRGNA-SGEISLDLPEIN 360
S+ + N DAG Y C A N G S E L +
Sbjct: 63 ---SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE 102
Score = 50.2 bits (120), Expect = 1e-06
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 257 FACPPNVTIKESMVIR-EAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
FA N + + G + + C E + W+ N + + + +E G
Sbjct: 98 FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG 157
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
++ + V D G YTC N N
Sbjct: 158 --------NLYIAKVEKSDVGNYTCVVTNTVTNHK 184
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 71.4 bits (175), Expect = 2e-13
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP S + ++ C V G P PT+ W+ NG V+ S + +
Sbjct: 312 PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS------ 365
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
++ + V D G Y C AEN GNA L +P+
Sbjct: 366 ---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 71.4 bits (175), Expect = 2e-13
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ S VI G + + C V G P P+ WL +V+ S
Sbjct: 221 QLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS----- 275
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ + NVTD D+G YTC N S L
Sbjct: 276 ---NLLISNVTDDDSGTYTCVVTYKNENISASAEL 307
Score = 64.1 bits (156), Expect = 5e-11
Identities = 33/137 (24%), Positives = 45/137 (32%), Gaps = 17/137 (12%)
Query: 257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
A P + + G V + C V GDP PTI W N Q L GD+
Sbjct: 118 VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQD--------LNPIPGDS 169
Query: 317 LFEKSVSITLF--NVTDLDAGEYTCYAENIRGN-ASGEISL---DLPEINLATTLSKTDS 370
S L + D+G Y C A N E + P ++ + S
Sbjct: 170 RVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPS 229
Query: 371 WYMLVLGISV---CVVS 384
+ + G C VS
Sbjct: 230 NVIAIEGKDAVLECCVS 246
Score = 59.5 bits (144), Expect = 1e-09
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
+ + S + GGNV ++C D P I W +G +L D ++ +L
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLL 80
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352
+++ + + D G Y C A SG I
Sbjct: 81 IQNILHSRHHKP--DEGLYQCEASL---GDSGSI 109
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 70.5 bits (172), Expect = 2e-13
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 7/114 (6%)
Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL-- 308
++ + P V+ + + G + + C V G W NG V+ L
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE 259
Query: 309 ----LEEEEGDALFEKSVSITLFNVTDLD-AGEYTCYAENIRGNASGEISLDLP 357
+E + + + +TC+A+N G + I L P
Sbjct: 260 DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313
Score = 52.4 bits (125), Expect = 2e-07
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 15/87 (17%)
Query: 273 EAGGNVTMSCYVY------GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
G+ + C + P + W + + L + ++ + +
Sbjct: 116 PVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---------RLIV 166
Query: 327 FNVTDLDAGEYTCYAENIRGNASGEIS 353
NV + G YTC+A I+
Sbjct: 167 MNVAEKHRGNYTCHASYTYLGKQYPIT 193
Score = 47.4 bits (112), Expect = 6e-06
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 266 KESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSI 324
++ +++ A C + + TI W + + E+ + + +
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKT------PVSTEQASRIHQHKEKL 64
Query: 325 TLFNVTDLDAGEYTCYAENIRGNASGEISL 354
D+G Y C N +IS
Sbjct: 65 WFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 71.2 bits (174), Expect = 3e-13
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCY-VYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
+ + G + + C V+ + + W L + L ++ + +
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINL 361
+ + + +V D G YTC + ++ ++ IN
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINA 329
Score = 65.9 bits (160), Expect = 1e-11
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 12/97 (12%)
Query: 260 PPNVTIKESM--VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
+ S + S P+ W + + L
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL--------- 374
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ SI+ F GEY +AEN + +L
Sbjct: 375 -DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
Score = 65.5 bits (159), Expect = 2e-11
Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ + V + ++T+ V + LW+ L+ L+ ++
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSM-- 105
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ +T+ AGEY + ++ N + ++
Sbjct: 106 -----VILKMTETQAGEYLLFIQSEATNYTILFTV 135
Score = 51.6 bits (123), Expect = 5e-07
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 11/90 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
T++ R+ + C PEP + W+L + + + +
Sbjct: 140 TLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK-- 196
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ +L + C A N G
Sbjct: 197 --------VLHELFGTDIRCCARNELGREC 218
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 70.3 bits (172), Expect = 4e-13
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P K E +++ + G +VT+ C V G P P ++W N + L + +
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS------- 360
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ + V + D G Y C A N G+ E +
Sbjct: 361 ----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 68.8 bits (168), Expect = 1e-12
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P ++ +AG + C +P + NG+ ++ + D +
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHN----RT 267
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ D G YTC +N G
Sbjct: 268 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 297
Score = 59.2 bits (143), Expect = 2e-09
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
P + + + V+ + C + G+ + W +G+ + + ++ +L
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 65
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEI 359
D G Y C+AE G A S IS +
Sbjct: 66 -------FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYL 100
Score = 49.9 bits (119), Expect = 1e-06
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
K G + C + P+P I W ++ +
Sbjct: 96 RKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRI 155
Query: 315 DALFEKSVSITLFNVTDL-DAGEYTCYAENIRGNAS 349
A + ++ T+ D+ D +Y C A+N +
Sbjct: 156 TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE 191
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 69.6 bits (171), Expect = 4e-13
Identities = 40/181 (22%), Positives = 77/181 (42%), Gaps = 22/181 (12%)
Query: 45 NFTALPSTLD----SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
A L+ L+L + + +AF+ L +LQ + + +G+ E+ DT
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR---LSHLQHMTIDAAGLMELP-DT 122
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNP-ITEL--------RAGQFP 150
+ L + L+ N + L + + +RL+ L + P +TEL +G+
Sbjct: 123 MQQFAGLETLTLARNPLRALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 151 KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
L L+++ L+ I S+ + +L L+SL + + L L ++ L+ L L G
Sbjct: 181 GLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLP-KLEELDLRG 238
Query: 211 N 211
Sbjct: 239 C 239
Score = 66.5 bits (163), Expect = 5e-12
Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 18/181 (9%)
Query: 43 DANFTALPSTL--DSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDT 100
D N ++ Q+ + + + L++ + + D
Sbjct: 42 DRNRWHSAWRQANSNNPQIETRTGRALKATADL-LEDATQPGRVALELRSVPLPQFP-DQ 99
Query: 101 FKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPKLPYLKTIE 159
L+ L + + + L + L+ L L NP+ L A L L+ +
Sbjct: 100 AFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALPAS-IASLNRLRELS 156
Query: 160 LQHC-QIHSV--------HKDALIHLTALESLNLNGNRLKHLSESVFFPTPNLKTLSLDG 210
++ C ++ + L L+SL L ++ L S+ NLK+L +
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ-NLKSLKIRN 215
Query: 211 N 211
+
Sbjct: 216 S 216
Score = 61.1 bits (149), Expect = 2e-10
Identities = 38/183 (20%), Positives = 66/183 (36%), Gaps = 24/183 (13%)
Query: 45 NFTALPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYL-KNSGIREV---- 96
LP T+ + ++ L L N + L SI L L+ + + + E+
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLRALPA----SIASLNRLRELSIRACPELTELPEPL 170
Query: 97 ----HRDTFKYLTILVEVDLSDNQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFPK 151
+ L L + L I L + N LK L + +P++ L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPAS--IANLQNLKSLKIRNSPLSALGPA-IHH 227
Query: 152 LPYLKTIELQHC-QIHSVHKDALIHLTALESLNL-NGNRLKHLSESVFFPTPNLKTLSLD 209
LP L+ ++L+ C + + L+ L L + + L L + T L+ L L
Sbjct: 228 LPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLR 285
Query: 210 GNP 212
G
Sbjct: 286 GCV 288
Score = 54.6 bits (132), Expect = 3e-08
Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 10/156 (6%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI 117
+ L + + L + +N R + +
Sbjct: 15 ENLYFQGS--TALRPY-HDVLSQWQRHYNADRN---RWHSAWRQANSNNPQIETRTGRAL 68
Query: 118 AWLHQD-TFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL 176
L L P+ + F +L +L+ + + + + D +
Sbjct: 69 KATADLLEDATQPGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLMELP-DTMQQF 126
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNP 212
LE+L L N L+ L S+ L+ LS+ P
Sbjct: 127 AGLETLTLARNPLRALPASIASLN-RLRELSIRACP 161
Score = 47.6 bits (114), Expect = 5e-06
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHRDTFKYLTILVEVDLSD-N 115
Q L L I L SI L NL+ + ++NS + + +L L E+DL
Sbjct: 186 QSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCT 240
Query: 116 QIAWLHQDTFLGN-DRLKVLYL-NGNPITELRAGQFPKLPYLKTIELQHC-QIHSVHKDA 172
+ G LK L L + + + L +L L+ ++L+ C + +
Sbjct: 241 ALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLP-SL 296
Query: 173 LIHLTALESLNLNGNRLKHLSE 194
+ L A + + + L +
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQ 318
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 67.1 bits (164), Expect = 5e-13
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
S + G + + C V P P + WL + + + S + + L
Sbjct: 96 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL-- 153
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353
+ N+ D G Y C A GEI
Sbjct: 154 -----QILNINKSDEGIYRCEGRV---EARGEID 179
Score = 66.7 bits (163), Expect = 7e-13
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
VTI S V G + +C G+PE + G+ + ++ + +E L
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL- 60
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
T++N DAG Y C A + +G
Sbjct: 61 ------TIYNANIEDAGIYRCQATDAKGQTQ 85
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 69.0 bits (169), Expect = 6e-13
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 258 ACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDL-LEEEEGDA 316
A P+ + + N T+ C V G P+P + W G+ + ++E +G
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL---PEINLATTLSK 367
+ + +VTD DA Y A N G+ SG SL++ +I+L TL
Sbjct: 62 H-----QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110
Score = 68.2 bits (167), Expect = 1e-12
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLL 309
+V+ P V G V++ G P+P I W ++ N+ + ++
Sbjct: 95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVI 154
Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPE 358
+L + V DAG Y A+N G + L D+P+
Sbjct: 155 VTRSFTSLVFPN------GVERKDAGFYVVCAKNRFGIDQKTVELDVADVPD 200
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 64.4 bits (157), Expect = 7e-13
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE----EEGD 315
PP + S +I G T++C G P PTI W G+ + D G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISL 354
F + I + D G Y C A N G A S + SL
Sbjct: 69 LFF---LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 66.2 bits (162), Expect = 1e-12
Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 11/152 (7%)
Query: 66 KISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTF 125
+ L + I ++ T L + LS N I + +
Sbjct: 13 IFEERKSVVATEAEKVEL---HGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISSLSG 68
Query: 126 LGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLN 185
+ N L++L L N I ++ L+ + + + QI S+ + L L L ++
Sbjct: 69 MEN--LRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMS 123
Query: 186 GNRLKHLSE-SVFFPTPNLKTLSLDGNPWCCD 216
N++ + E L+ L L GNP +
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNP-LYN 154
Score = 51.6 bits (124), Expect = 1e-07
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQ 116
+++L L N I + E ++ L+ +++ + I + + L L + +S+N+
Sbjct: 72 LRILSLGRNLIKKI--ENLDAV-ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNK 126
Query: 117 IA-WLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTI 158
I W D D+L+ L L GNP+ Y +
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169
Score = 44.7 bits (106), Expect = 3e-05
Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 51 STLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHR-DTFKYLTILVE 109
+ ++ L ++ N+I+ L + L+NL+ +Y+ N+ I D L L +
Sbjct: 89 DAVADTLEELWISYNQIASL--SGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144
Query: 110 VDLSDNQIAWLHQDTFLGND-RLKVL-------YLNGNPITE 143
+ L+ N + +++ ++ R++V+ L+G P+
Sbjct: 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV 186
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 68.7 bits (168), Expect = 1e-12
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P+ + + G ++ SC G P P + WL +GQ L + + +
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG------- 346
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + D+G Y C AEN G L
Sbjct: 347 ---ELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
Score = 63.0 bits (153), Expect = 8e-11
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + G VT+ C+ +G+P P I W + E
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL----------SSE 256
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ I NV D G Y C AENI+G + + +
Sbjct: 257 PLLHIQ--NVDFEDEGTYECEAENIKGRDTYQGRI 289
Score = 61.0 bits (148), Expect = 3e-10
Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + E A VT++C +P T W +NG L GD +
Sbjct: 11 PAHTLFPEG----SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVIS 66
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPEI 359
V DAG Y C A N RG S E SL +
Sbjct: 67 NPVKAK-------DAGSYQCVATNARGTVVSREASLRFGFL 100
Score = 50.2 bits (120), Expect = 1e-06
Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 8/114 (7%)
Query: 257 FACPPNVTIKESMVIR-EAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
F + +E ++ G V +C P + WLLN + +
Sbjct: 97 FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPN------FIPADGR 150
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKT 368
+ + + ++ + D G Y+C+A + + + +++LA ++
Sbjct: 151 RFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQ 204
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 63.1 bits (154), Expect = 1e-12
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
+ +E GG+V C + + T + W + L NS + E+G A
Sbjct: 8 IMHAVGEE-------GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVA-- 58
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + ++T LD G Y C N G S L
Sbjct: 59 ----ILYVKDITKLDDGTYRCKVVNDYGEDSSYAEL 90
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 69.3 bits (169), Expect = 1e-12
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 13/101 (12%)
Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS 321
N T + S P+ W + + L +
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----------DNG 377
Query: 322 VSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL---PEI 359
SI+ F GEY +AEN + +L++ P++
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV 418
Score = 67.4 bits (164), Expect = 5e-12
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ + V + ++T+ V + LW+ L+ L+
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRG------ 101
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
VS+ + +T+ AGEY + ++ N + ++ +
Sbjct: 102 -VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139
Score = 67.4 bits (164), Expect = 5e-12
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 1/103 (0%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
+ + G + + C + + W L + L ++ + +
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINL 361
+ + + +V D G YTC + ++ ++ IN
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINA 329
Score = 63.6 bits (154), Expect = 1e-10
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE-----EEEGDA 316
+ I+ + SC+ G P P+ W N + ++ E +
Sbjct: 409 TLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKV 468
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ S TL + C A N G + I L+ P
Sbjct: 469 FGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG 510
Score = 55.1 bits (132), Expect = 4e-08
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 12/100 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
T++ R+ + C PEP + W+L + +
Sbjct: 140 TLLYTLRRP-YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPA--------- 189
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPE 358
V + +L + C A N G + ++DL +
Sbjct: 190 -VVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 69.6 bits (170), Expect = 1e-12
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 17/97 (17%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + TI S G N+++SC+ +P WL++G + ++
Sbjct: 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ-------------- 426
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ + N+T+ ++G YTC A N S +
Sbjct: 427 ---ELFISNITEKNSGLYTCQANNSASGHSRTTVKTI 460
Score = 68.1 bits (166), Expect = 5e-12
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 17/97 (17%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P I +G N+ +SC+ +P P W +NG ++
Sbjct: 559 PDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQ-------------- 604
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ + +T + G Y C+ N+ + I +
Sbjct: 605 ---VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 65.0 bits (158), Expect = 4e-11
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 17/97 (17%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P TI +G N+ +SC+ +P W +NG ++
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ-------------- 248
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ + N+T ++G YTC A N + +
Sbjct: 249 ---ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTI 282
Score = 64.6 bits (157), Expect = 5e-11
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + E V +C T LW +N Q L S L
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNR----- 164
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLDLPE 358
++TLFNVT D Y C +N S + L++
Sbjct: 165 ---TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY 201
Score = 62.7 bits (152), Expect = 2e-10
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + E V +C T LW +NGQ L S L
Sbjct: 467 PKPSISSNNSKPVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNR----- 520
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLD 355
++TLFNVT DA Y C +N S ++LD
Sbjct: 521 ---TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLD 554
Score = 59.6 bits (144), Expect = 2e-09
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P +T S + + V ++C T LW +N Q L S L +
Sbjct: 290 KPFITSNNSNPVED-EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNR----- 342
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRG-NASGEISLD 355
++TL +VT D G Y C +N + S + L+
Sbjct: 343 ---TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN 376
Score = 48.8 bits (116), Expect = 4e-06
Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 10/97 (10%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
+TI+ + G V + + W +V N A +
Sbjct: 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY 61
Query: 323 S----------ITLFNVTDLDAGEYTCYAENIRGNAS 349
S + + N+ D G YT +
Sbjct: 62 SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNE 98
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 67.8 bits (165), Expect = 1e-12
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNG-QVLHNSSFDLLEEEEGDAL 317
P V++ E+ + + G T+ C + +WL Q H + GD
Sbjct: 188 IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFN 247
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+E+ ++T+ + D+G + CYA N G+A+ +L
Sbjct: 248 YERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Score = 53.2 bits (127), Expect = 9e-08
Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 16/132 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL-LNGQVLHNSSFDLLEEEEGDALF 318
P + + + + + + C + + +G+ L + + G
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG---- 146
Query: 319 EKSVSITLFNVTDL-DAGEYTCYAEN-IRGNASGEISLD-LPEINLATTLSKTDSWYMLV 375
IT+ NV C A+ S + +L I +S ++ ++L
Sbjct: 147 -----ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLK 201
Query: 376 LGISV---CVVS 384
G + C +
Sbjct: 202 KGDTFTVVCTIK 213
Score = 42.8 bits (100), Expect = 2e-04
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 17/105 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP++ +S +I EAG ++++C + W
Sbjct: 12 PPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEMVE-------------N 54
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATT 364
K G YTC N ++ D ++ L
Sbjct: 55 KKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGL 99
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 66.1 bits (161), Expect = 2e-12
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 15/89 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ ++ + G + + C G P P W N L + + L
Sbjct: 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLY---------- 167
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA 348
+ V G Y C+ N R +
Sbjct: 168 -----MVPYVDLEHQGTYWCHVYNDRDSQ 191
Score = 64.5 bits (157), Expect = 5e-12
Identities = 29/145 (20%), Positives = 43/145 (29%), Gaps = 24/145 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+T+ AG V + C G P W + + N +
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------------- 63
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLD---LPEINLATTLSKTDSWYMLV 375
+ + V DAG Y C N S LD +PE + ++S
Sbjct: 64 -TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSES----K 118
Query: 376 LGISVCVVSVIVSIGMSFC-VCRAH 399
L I V S + G + C A
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCVAV 143
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 62.8 bits (153), Expect = 2e-12
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ ++ + G + + C + D +I WL +G L S+ + E
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE------- 54
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + + D+G Y C + G+ + S+
Sbjct: 55 ---EVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 65.2 bits (159), Expect = 2e-12
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 9/98 (9%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
+E G + + C V PTI+W G+ + + L
Sbjct: 100 KLMFKNAPTPQEFKE-GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL- 157
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ + D G Y C + + +
Sbjct: 158 ------QIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Score = 59.8 bits (145), Expect = 2e-10
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP-EPTILWLL-NGQVLHNSSFDLLEEEEGDAL 317
V I S G + C V GD + I W NG+ L + + D
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD-- 59
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
S ++T++N DAG Y C G S
Sbjct: 60 --DSSTLTIYNANIDDAGIYKCVVTAEDGTQS 89
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 67.3 bits (164), Expect = 2e-12
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-NGQVLHNSSFDLLEEEEGDALF 318
PP +T+ + ++R G + C ++L N L +
Sbjct: 186 PPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNR----Y 241
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+K +++ L V AG Y+C A N++G S +
Sbjct: 242 QKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
Score = 47.3 bits (112), Expect = 7e-06
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + ++ + G VT+ C G ++ W D
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSD-----------G 48
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
S ++ N T + G Y C S I L
Sbjct: 49 SSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHL 83
Score = 44.6 bits (105), Expect = 4e-05
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 15/132 (11%)
Query: 260 PPNVTIKESMVIR-EAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
P + + + + C + E + + +
Sbjct: 88 PARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH--- 144
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAEN-IRGNASGEISLD-LPEINLATTLSKTDSWYMLV 375
T+ + + +Y C A R S I L I L+ + + +
Sbjct: 145 -----GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRI 199
Query: 376 LGISV---CVVS 384
G + C S
Sbjct: 200 RGEAAQIVCSAS 211
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 64.9 bits (158), Expect = 3e-12
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS------FDLLEEEE 313
P++T + + G + M C G P P +W + F ++ +E
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
L ++ IT D GEY C A N G+AS L
Sbjct: 152 YTELNIVNLQIT------EDPGEYECNATNSIGSASVSTVL 186
Score = 61.8 bits (150), Expect = 3e-11
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFDLLEEEEGDAL 317
P + E ++IR++ VT+ C + W NG L + +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA--------- 53
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL---PEI 359
++ + D+GEY C + ++++ P+I
Sbjct: 54 --SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDI 95
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 65.2 bits (159), Expect = 3e-12
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE----EEGD 315
PP + S +I G T++C G P PTI W G+ + D G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
F + I + D G Y C A N G A
Sbjct: 69 LFF---LRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 60.2 bits (146), Expect = 1e-10
Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 251 DVKAQEFACPPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLL 309
D + + S V+ G M C G PEPTI W +G L + +
Sbjct: 102 DASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT 161
Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
G L + DAG+Y C N+ G
Sbjct: 162 IR--GGKL-------MITYTRKSDAGKYVCVGTNMVGER 191
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 61.7 bits (150), Expect = 3e-12
Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 13/97 (13%)
Query: 260 PPNVTIKE-SMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
P VT++E G +VT C P T++W S + L
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA----MDFNGIL 64
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
T+ NV DAG Y C N+ G +L
Sbjct: 65 -------TIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 65.3 bits (158), Expect = 5e-12
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 15/110 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE--------- 310
+V + G ++TM+C + W N +
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195
Query: 311 ------EEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
E G A F + ++ + DAG C +G + S
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Score = 47.2 bits (111), Expect = 6e-06
Identities = 24/109 (22%), Positives = 32/109 (29%), Gaps = 26/109 (23%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVY---GDPEPTILWLLNGQVLHNSSF----------- 306
V + V AGG V + C P I WL ++
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 307 ------DLLEEEEGDALFEKSV------SITLFNVTDLDAGEYTCYAEN 343
D +E GD L SV ++ L +V D G Y C
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQ 111
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 64.5 bits (157), Expect = 6e-12
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCY-VYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
+ ++ G + C G PEPT++W+ +G L + +
Sbjct: 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
+ ++ + NV +D G Y C A+N+ G
Sbjct: 168 DGG-NLLISNVEPIDEGNYKCIAQNLVGTR 196
Score = 63.7 bits (155), Expect = 1e-11
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS--FDLLEEEEGDAL 317
P + + ++ + T++C V G PEPTI W +G+ + + ++ ++G
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
F +++ + D GEY C A+N G A
Sbjct: 69 FYRTMQ----GKKEQDGGEYWCVAKNRVGQA 95
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 66.6 bits (162), Expect = 9e-12
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 6/103 (5%)
Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE------EEEGD 315
V K ++ + N + C G PEPTI W S +L G
Sbjct: 408 YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGP 467
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ V ++ + G C A N G S +
Sbjct: 468 PFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510
Score = 66.2 bits (161), Expect = 1e-11
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 11/132 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
P V++ ++ + G T++C + W GD +
Sbjct: 211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT-KLQEKYNSWHHGDFNY 269
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEINLATTLSKTDSWYMLV 375
E+ ++T+ + D+G + CYA N G+A+ +L D IN+ ++ T +
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTT---VFVN 326
Query: 376 LGISV---CVVS 384
G +V
Sbjct: 327 DGENVDLIVEYE 338
Score = 64.7 bits (157), Expect = 4e-11
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 260 PPNVTI---KESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGD 315
+ I + V G NV + P+P W+ + + D + E
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENES 369
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL---PEI 359
+ S + L + + G YT N NA+ ++ + PEI
Sbjct: 370 NIRYVS-ELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI 415
Score = 48.1 bits (114), Expect = 5e-06
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 18/100 (18%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PP++ +S +I G + + C + W N +
Sbjct: 36 PPSIHPGKSDLIVRVGDEIRLLC----TDPGFVKWTFEILDETNEN-------------- 77
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
K + G+YTC ++ N+ D ++
Sbjct: 78 KQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKL 117
Score = 44.3 bits (104), Expect = 1e-04
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 14/131 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + + + + + + + C + DPE T L Q ++ + +
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQ-------GKPLPKDLRFIPD 165
Query: 320 KSVSITLFNVTDL-DAGEYTCYAENIRGN-ASGEISLD-LPEINLATTLSKTDSWYMLVL 376
I + +V C + + S + L P +S + + Y+L
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLRE 225
Query: 377 GISV---CVVS 384
G C +
Sbjct: 226 GEEFTVTCTIK 236
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 63.9 bits (155), Expect = 9e-12
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P+ T E G + + C G W + L E
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP---- 176
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
I++ N + +G Y+C +N G+ + LD+
Sbjct: 177 ----VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 51.6 bits (123), Expect = 1e-07
Identities = 34/214 (15%), Positives = 61/214 (28%), Gaps = 53/214 (24%)
Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPT----ILWLLNGQVLHNSS------------ 305
++T E + + G + C PE I WL++
Sbjct: 2 SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61
Query: 306 FDLLEEEEGDALF------EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
+ + +G F SI + N+ D G Y C + G A+ + L
Sbjct: 62 DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLT---- 117
Query: 360 NLATTLSKTDSWYMLVLG---ISVCVVSVIVSIGMSFCV-CRAHEHKNK-----RRKRKG 410
VL + C V IG F + C E ++
Sbjct: 118 ---------------VLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDS 162
Query: 411 KMKQSVSFNDQEKKLLDVSITTTDRHTG--SCEA 442
+ + + ++ V + ++G SC
Sbjct: 163 QTMPTPWLAEMTSPVISVK-NASSEYSGTYSCTV 195
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 61.3 bits (148), Expect = 1e-11
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 261 PNVTIKESMVIR-EAGGNVTMSCYVYGDPEPTI--LWLLNGQVLHNSSF--DLLEEEEGD 315
+V + S I G + ++C + I W + L+ + G
Sbjct: 8 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL---DLPEINLAT 363
+ + ++T+ VT D G YTC A + + + P + +
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS 118
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 60.6 bits (147), Expect = 1e-11
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
E A P V ++ ++ G + + C + D +I WL +G L S+ + E
Sbjct: 5 EQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGE--- 60
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ + + D+G Y C + G+ + S++
Sbjct: 61 -------EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 60.9 bits (147), Expect = 1e-11
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 257 FAC----PPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSFD--L 308
F C P +T++ G +V+ +C + T W + + L ++ +
Sbjct: 3 FVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYA 62
Query: 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
+G L E + + L NV G Y C N G++
Sbjct: 63 HLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 64.2 bits (156), Expect = 2e-11
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 16/121 (13%)
Query: 235 PLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTIL 293
+ Q + W + F + + NV + C V E I+
Sbjct: 203 FKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTG-------ECNVLLKCKVANIKKETHIV 255
Query: 294 WLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353
W + + + ++ ++ + + DAG Y ++ RG +
Sbjct: 256 WYKDEREISVDEKHDFKDGIC--------TLLITEFSKKDAGIYEVILKDDRGKDKSRLK 307
Query: 354 L 354
L
Sbjct: 308 L 308
Score = 61.9 bits (150), Expect = 1e-10
Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 6/101 (5%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDALF 318
V + ++ I E G + ++ N + + + + +
Sbjct: 108 TVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT---- 163
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
+ + + + D D G YT ++ + + L
Sbjct: 164 -GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVF 203
Score = 61.9 bits (150), Expect = 1e-10
Identities = 38/265 (14%), Positives = 72/265 (27%), Gaps = 50/265 (18%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P V + ++ C P+ W + +S L E +G+
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSP-RLEVESKGN---- 56
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGIS 379
+T ++ D G Y+C + G AS S + E L L+ + + +
Sbjct: 57 -KTKMTFKDLGMDDLGIYSCDVTDTDGIAS---SYLIDEEELKRLLALSHEHKFPTVPVK 112
Query: 380 VCVVSVIVSIGMSFCVCRAHE----------HKNKRRKRKGKMKQSVSFNDQEKKLLDVS 429
+ I+ G +A + K K K + N ++
Sbjct: 113 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 172
Query: 430 ITTTDRHTG--SCEA---LGS---------------QPDMELIEQSLAMEQPPVHITIES 469
+ D G + + + Q + E Q +Q P + S
Sbjct: 173 LQDED--EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS 230
Query: 470 HAVDP--------QVSVFPPPPEFS 486
V +V+
Sbjct: 231 WEVTGECNVLLKCKVANIKKETHIV 255
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 61.5 bits (150), Expect = 3e-11
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
+VLYL N IT+L G F +L L ++L + Q+ + LT L L+LN N+LK
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWL 226
+ F +L + L NPW C C + W+
Sbjct: 93 IPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128
Score = 54.5 bits (132), Expect = 7e-09
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C + C + ++P+ + + QVL L +N+I+ L F L L
Sbjct: 3 CPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR--LTQL 56
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL---YLNGNP 140
R+ L N+ + + F LT L ++ L+DNQ+ + + F D LK L +L NP
Sbjct: 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF---DNLKSLTHIWLLNNP 113
Score = 31.0 bits (71), Expect = 0.58
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
T + L L N++ L VF L L LD N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN 64
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 61.5 bits (149), Expect = 3e-11
Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 17/93 (18%)
Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS 321
+T + + G ++T++ P++ L
Sbjct: 100 GLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTL------------- 145
Query: 322 VSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ + D+G +TC + +I +
Sbjct: 146 ---SVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
Score = 55.8 bits (134), Expect = 4e-09
Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 265 IKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL-----------HNSSFDLLEEEE 313
+K+ ++ ++ G V ++C W + Q+ S + +
Sbjct: 1 MKKVVLGKK-GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSR 59
Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRG 346
+ + + + N+ D+ Y C E+ +
Sbjct: 60 RSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE 92
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 59.2 bits (143), Expect = 4e-11
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 13/105 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP---EPTILWLLNGQVLHNSSFD---LLEEEE 313
P + + GG++T S V G P + W V +S L +
Sbjct: 11 PQDGEVTV-------GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
A + + + G Y C +L + E
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 58.5 bits (142), Expect = 5e-11
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 258 ACPPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
V + + G + +P+ W L GQ L S D E+G
Sbjct: 3 MALIEVEKPLYGVEVFV-GETAHFEIEL-SEPDVHGQWKLKGQPLAASP-DCEIIEDG-- 57
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
K + L N GE + A N + A
Sbjct: 58 ---KKHILILHNCQLGMTGEVSFQAANTKSAA 86
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 61.6 bits (149), Expect = 5e-11
Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEE---EEGDALFE 319
VT + + + G +V++ C + + + L E + L
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ +V D+G+Y C +++ +
Sbjct: 65 GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKA 103
Score = 52.4 bits (125), Expect = 6e-08
Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 8/100 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ I ++ G V ++C G P + W ++ + EG L+
Sbjct: 103 ASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSV---PANTSHIRTPEG--LY- 156
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
V+ L + + ++C N +D
Sbjct: 157 -QVTSVL-RLKPQPSRNFSCMFWNAHMKELTSAIIDPLSR 194
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 64.2 bits (157), Expect = 5e-11
Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 31/183 (16%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGL----------LNLQRIYLKNSGIREVHRDTFKYLTI 106
++ L L + + T + + + L L L + G+ E+ +
Sbjct: 201 LEALKLESCGV---TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257
Query: 107 LVEVDLSDNQI---AWLHQDTFLG-NDRLKVLYLNGNPITE-----LRAGQFPKLPYLKT 157
L + + + I L + LK L L GN + + L L++
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317
Query: 158 IELQHCQIHSVH----KDALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSL 208
+ ++ C + L L L ++ NRL + L + + P L+ L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377
Query: 209 DGN 211
Sbjct: 378 ADC 380
Score = 60.4 bits (147), Expect = 9e-10
Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 25/180 (13%)
Query: 57 IQVLDLNNNKISYLTKEAF-------KSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVE 109
++ L L +S + E L + + +G+R + + L
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203
Query: 110 VDLSDNQI---AWLHQDTFLG-NDRLKVLYLNGNPIT-----ELRAGQFPKLPYLKTIEL 160
+ L + + L+ L L N + EL G L+T+ +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263
Query: 161 QHCQIHSVHK----DALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSLDGN 211
C I + L +L+ L+L GN L + L E++ P L++L +
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323
Score = 59.2 bits (144), Expect = 2e-09
Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 47/177 (26%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSI--GLLNLQRIYLKNSGIREVH----RDTFKYLTILV 108
DIQ LD+ ++S + + L Q + L + G+ E + L
Sbjct: 3 LDIQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59
Query: 109 EVDLSDNQIAWLHQDTFL---------GNDRLKVLYLNGNPITELRAGQFPKLPYLKTIE 159
E++L N++ D + + +++ L L +T
Sbjct: 60 ELNLRSNEL----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG---------------- 99
Query: 160 LQHCQIHSVHKDALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSLDGN 211
C + S L L L+ L+L+ N L + L E + P L+ L L+
Sbjct: 100 -AGCGVLS---STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152
Score = 57.3 bits (139), Expect = 8e-09
Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 37/192 (19%)
Query: 57 IQVLDLNNNKIS-----YLTK--EAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVE 109
++ L + I+ L + A +S+ L+L L + G R + + L
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317
Query: 110 VDLSDNQIAWLHQDTFLG----------NDRLKVLYLNGNPIT-----ELRAGQFPKLPY 154
+ + T N L L ++ N + EL G
Sbjct: 318 LWVKSCSF------TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371
Query: 155 LKTIELQHCQIHSV----HKDALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKT 205
L+ + L C + L+ +L L+L+ N L L ESV P L+
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 431
Query: 206 LSLDGNPWCCDC 217
L L W +
Sbjct: 432 LVLYDIYWSEEM 443
Score = 55.4 bits (134), Expect = 3e-08
Identities = 28/182 (15%), Positives = 54/182 (29%), Gaps = 53/182 (29%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSI--GL----LNLQRIYLKNSGIREVH----RDTFKYL 104
+ L+L +N++ + GL +Q++ L+N + T + L
Sbjct: 56 PALAELNLRSNELGD---VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 112
Query: 105 TILVEVDLSDNQI----------AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPY 154
L E+ LSDN + L RL+ L L ++
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQC-----RLEKLQLEYCSLSAASCEPLAS--- 164
Query: 155 LKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSLD 209
L + L ++ N + + L + + L+ L L+
Sbjct: 165 -----------------VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207
Query: 210 GN 211
Sbjct: 208 SC 209
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 62.4 bits (151), Expect = 5e-11
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 26/101 (25%)
Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
E CP N T E T C +G+P P + L +G
Sbjct: 187 DERDCPGNWTWPE-------NSQQTPMCQAWGNPLPELKCLKDGTFPLPIG--------- 230
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
VT G Y C A + +G + E++++
Sbjct: 231 ----------ESVTVTRDLEGTYLCRARSTQGEVTREVTVN 261
Score = 45.8 bits (108), Expect = 2e-05
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 13/100 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
PP + + E T+ C + G E + L Q L+ + D+
Sbjct: 6 PPQLVSPRVL---EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-----TYGNDS 57
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ + D TC + ++ +
Sbjct: 58 FS--AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 95
Score = 35.8 bits (82), Expect = 0.028
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 22/91 (24%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PNV + + V G VT+ C + + T+ + + +
Sbjct: 100 APNVILTKPEVS--EGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQL------------- 144
Query: 320 KSVSITLFNVTDLDAG-EYTCYAENIRGNAS 349
L T D G ++C A
Sbjct: 145 ------LLKATPEDNGRSFSCSATLEVAGQL 169
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 58.2 bits (141), Expect = 8e-11
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 258 ACPPNVTIKESM--VIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
+V I + + + G + + C + + +W + G+ + +SS +G
Sbjct: 4 GSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS-RFQATRQG 62
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + + DAGE + AS
Sbjct: 63 -----RKYILVVREAAPSDAGEVVFSVRGLTSKAS 92
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 60.3 bits (147), Expect = 8e-11
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 132 KVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRLKH 191
+ L+LN N IT+L G F L L+ + ++ ++ LT L L+LN N LK
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 192 LSESVFFPTPNLKTLSLDGNPWCCDCH-LRSFRNWLLK 228
+ F +L + L NPW C+C + RNW+
Sbjct: 96 IPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVAD 133
Score = 55.0 bits (133), Expect = 5e-09
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 24 CPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNL 83
CP C C + C++ ++P+ + +D Q L LNNN+I+ L F L+NL
Sbjct: 6 CPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDH--LVNL 59
Query: 84 QRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVL---YLNGNP 140
Q++Y ++ + + F LT L ++DL+DN + + + F D LK L YL NP
Sbjct: 60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF---DNLKSLTHIYLYNNP 116
Score = 31.8 bits (73), Expect = 0.39
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
T + L LN N++ L VF NL+ L + N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN 67
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 58.2 bits (141), Expect = 8e-11
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + + G + ++ + D + + WL NGQ + S + E G
Sbjct: 23 EPAYQVSK-------GHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA---- 70
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
++T+ + D Y C + +
Sbjct: 71 -KRTLTISQCSLADDAAYQCVVGGEKCSTE 99
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 61.1 bits (148), Expect = 8e-11
Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
++ I E G + ++ N + + + + + + + +
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI----IEMFM 65
Query: 327 FNVTDLDAGEYTCYAENIRGNAS 349
+ D D G YT ++ +
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNH 88
Score = 60.7 bits (147), Expect = 1e-10
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P+ S + NV + C V E I+W + + + + + ++G
Sbjct: 117 GPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVD--EKHDFKDGI--- 170
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ + + DAG Y ++ RG + L
Sbjct: 171 ---CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 60.3 bits (146), Expect = 8e-11
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 17/89 (19%)
Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
I N T++C V +P + +G+ L S +
Sbjct: 110 KISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQ-----------------RVITHKW 152
Query: 330 TDLDAGEYTCYAENIRGNASGEISLDLPE 358
T + ++ C A N S + PE
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVSCPE 181
Score = 46.0 bits (109), Expect = 7e-06
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 265 IKESMVIREA-GGNVTMSC--YVYGDPEPTILWLLNG---QVLHNSSFDLLEEEEGDALF 318
I ++ A G ++ + + D I W ++ +E+
Sbjct: 3 ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
K+ ++ + ++ D Y + +G E DL
Sbjct: 63 FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL 100
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 58.2 bits (141), Expect = 9e-11
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
++T+K C V D + T W NG + S + G
Sbjct: 15 IADLTVKA-------AEQAVFKCEV-SDEKVTGKWYKNGVEVRPSK-RITISHVGR---- 61
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEI 359
+ + +V D G+YT + + S +++ ++
Sbjct: 62 -FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKV 100
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 60.7 bits (147), Expect = 9e-11
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
+ G T+ C + P + WL +GQ+L + + G+
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 319 EKSVSIT---LFNVTDLDAGEYTCYAENIRGNA 348
+ + ++ + ++ D G+Y C
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTF 94
Score = 58.4 bits (141), Expect = 6e-10
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 14/91 (15%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
P + A +SC G PEP +LWL + L +
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHG---------- 155
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
S+ + + ++C A N +G +
Sbjct: 156 -PQRSLHVPGLN--KTSSFSCEAHNAKGVTT 183
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 62.8 bits (153), Expect = 1e-10
Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 37/191 (19%)
Query: 57 IQVLDLNNNKIS---------YLTKEAFKSIGLLN--LQRIYLKNSGIREVH----RDTF 101
++ L L+NN + L + A L+ I + + TF
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183
Query: 102 KYLTILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITE-----LRAGQFPK 151
+ +L V + N I L + LKVL L N T L A
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIALKS 242
Query: 152 LPYLKTIELQHCQIHSVHKDAL------IHLTALESLNLNGNRL-----KHLSESVFFPT 200
P L+ + L C + + A+ + L++L L N + + L +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302
Query: 201 PNLKTLSLDGN 211
P+L L L+GN
Sbjct: 303 PDLLFLELNGN 313
Score = 55.5 bits (134), Expect = 2e-08
Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 44/198 (22%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLL-----NLQRIYLKNSGIREVHRDT--------- 100
++ + L+ N I EA + + +L+ + V +
Sbjct: 32 DSVKEIVLSGNTIG---TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88
Query: 101 -FKYLTILVEVDLSDNQI----AWLHQDTFLGNDRLKVLYLNGNPITE------------ 143
L V LSDN D + L+ LYL+ N +
Sbjct: 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148
Query: 144 -LRAGQFPKLPYLKTIELQHCQIH--SVHK--DALIHLTALESLNLNGNRL-----KHLS 193
+ P L++I ++ S+ + L ++ + N + +HL
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 194 ESVFFPTPNLKTLSLDGN 211
LK L L N
Sbjct: 209 LEGLAYCQELKVLDLQDN 226
Score = 53.9 bits (130), Expect = 6e-08
Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 36/180 (20%)
Query: 38 SALCKDANFTALPSTLDSDIQVLDLNNNKI-----SYLTKEAFKSIGLLNLQRIYLKNSG 92
AL + A + ++ + N++ + F+S L + + +G
Sbjct: 144 RALQELAVNKKAKNA--PPLRSIICGRNRLENGSMKEWA-KTFQSHR--LLHTVKMVQNG 198
Query: 93 IR-----EVHRDTFKYLTILVEVDLSDNQI----AWLHQDTFLGNDRLKVLYLNGNPITE 143
IR + + Y L +DL DN + L+ L LN ++
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258
Query: 144 ---------LRAGQFPKLPYLKTIELQHCQIHSVHKDALI-----HLTALESLNLNGNRL 189
+ L +T+ LQ+ +I L + L L LNGNR
Sbjct: 259 RGAAAVVDAFSKLENIGL---QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
Score = 46.2 bits (110), Expect = 2e-05
Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 24/128 (18%)
Query: 107 LVEVDLSDNQI----AWLHQDTFLGNDRLKVLYLNGNPITELRAGQF----PKLPYLKTI 158
+ L + I L +D +K + L+GN I A L+
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 159 ELQHCQIHSVHK----------DALIHLTALESLNLNGNRL-----KHLSESVFFPTPNL 203
E V AL+ L ++ L+ N + L + + T L
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PL 124
Query: 204 KTLSLDGN 211
+ L L N
Sbjct: 125 EHLYLHNN 132
Score = 45.5 bits (108), Expect = 4e-05
Identities = 30/200 (15%), Positives = 54/200 (27%), Gaps = 64/200 (32%)
Query: 44 ANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIGLL-----NLQRIYLKNSGIREVH- 97
A F+ I+ L + I T E KS+ + +++ I L + I
Sbjct: 2 ARFS---------IEGKSLKLDAI---TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAA 49
Query: 98 ---RDTFKYLTILVEVDLSDNQIAWLHQDTFLG----------NDRLKVLYLNGNPITEL 144
+ L + SD + + +L + L+ N
Sbjct: 50 RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109
Query: 145 RAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL-----KHLSESVFFP 199
D L T LE L L+ N L ++ ++
Sbjct: 110 AQEPL--------------------IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149
Query: 200 T--------PNLKTLSLDGN 211
P L+++ N
Sbjct: 150 AVNKKAKNAPPLRSIICGRN 169
Score = 35.5 bits (82), Expect = 0.052
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 25/106 (23%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIG-----LLNLQRIYLKNSGIREV---------HRDTFK 102
++VLDL +N T ++ NL+ + L + + +
Sbjct: 218 LKVLDLQDNTF---THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274
Query: 103 YLTILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITE 143
L L L N+I L L L LNGN +E
Sbjct: 275 GLQTL---RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 60.6 bits (146), Expect = 1e-10
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 5/100 (5%)
Query: 260 PPNVTIKESMVIR-EAGGNVTMSCYVYGDPEP--TILWLLNGQVLHNSSF--DLLEEEEG 314
+V + S I G + ++C + W + L+ + G
Sbjct: 104 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 163
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + ++T+ VT D G YTC A + +
Sbjct: 164 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 203
Score = 35.5 bits (81), Expect = 0.031
Identities = 8/87 (9%), Positives = 18/87 (20%), Gaps = 7/87 (8%)
Query: 257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
F + + V + C + +
Sbjct: 6 FIASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPE------KRFVPDGNRI 58
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAEN 343
++ T+ + AG C A+
Sbjct: 59 SWDSKKGFTIPSYMISYAGMVFCEAKI 85
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 60.8 bits (147), Expect = 1e-10
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P N + +V+ ++C G P+ ++W + + + + + LF
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF- 174
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLAT 363
+V+ TL + + C + + L +PE+ LA
Sbjct: 175 -NVTSTL-RINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAH 216
Score = 47.7 bits (113), Expect = 3e-06
Identities = 37/236 (15%), Positives = 79/236 (33%), Gaps = 49/236 (20%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDP-----EPTILWLLNGQVLHN--SSFDLLEEE--- 312
VT+ + + + E G N+T+ C + + W + + + + L+ +
Sbjct: 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63
Query: 313 -------EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTL 365
D L + ++ + +V DAG Y C + G I++ +
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYN---- 118
Query: 366 SKTDSWYMLVLGISVCVVSVIVSIGMSFCV-CRAH---EHKNKRRKRKGKM---KQSVSF 418
+ V+ + + C+A + + ++ K + +
Sbjct: 119 ------------KINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTN 166
Query: 419 NDQEKKLLDVS----ITTTDRHTGSCEA---LGSQP-DMELIEQSLAMEQPPVHIT 466
+ +E+KL +V+ I TT C + EL+ L + PP T
Sbjct: 167 SKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERT 222
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 60.4 bits (146), Expect = 1e-10
Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVL---HNSSFDLLEEEEGDA 316
P +++ +T++C V P P + WL+ V ++ +++E++G
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG-- 161
Query: 317 LFEKSVSITLF-NVTDLDAGEYTCYAENIRGNASG 350
S+S+ + ++ TC +N + A G
Sbjct: 162 ----SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
Score = 41.6 bits (97), Expect = 3e-04
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 274 AGGNVTMSCY---VYGDPEPTILWLLNG----QVLHNS-SFDLLEEEEGDALFEK----- 320
G VT++ Y V PE + W G QVL D++ E F
Sbjct: 5 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA 64
Query: 321 -SVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + + G Y C + + + L
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 62.0 bits (150), Expect = 2e-10
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 252 VKAQEFACPPNVTIKESMVIREAGGNVTMSCYV---YGDPEPTILWLLNGQVLHNSSFDL 308
+K ++ P + + G +T+ C V G P T+LW S++
Sbjct: 218 IKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPG 277
Query: 309 LEEEEG-------DALFEKSVSITLFNVTDLDAG-EYTCYAENIRGNASGEISL 354
EG + V + VT D ++ C N + ++
Sbjct: 278 GRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 62.0 bits (150), Expect = 2e-10
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 9/106 (8%)
Query: 252 VKAQEFACPPNVTIKESMVIREAG--GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL 309
V A P ++ + + + +G +S + + I W + +L + L
Sbjct: 115 VFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFL 174
Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
L + +V DAG Y C I+
Sbjct: 175 SVRGTTHL-------LVHDVALEDAGYYRCVLTFAHEGQQYNITRS 213
Score = 51.6 bits (123), Expect = 3e-07
Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 20/102 (19%)
Query: 260 PPNVTIKESMVIREAGGNVTMSC-------YVYGDPEPTILWLLNGQVLHNSSFDLLEEE 312
E G V + C + P + W N E
Sbjct: 25 YKREFRLE-------GEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPG------E 71
Query: 313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
E ++ + ++ L D+G Y C N I L
Sbjct: 72 EETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIEL 113
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 58.1 bits (140), Expect = 2e-10
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 13/102 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDP---EPTILWLLNGQV-LHNSSFDLLEEEEGD 315
P T+K G ++T V + +PTI W + L + + L+ +E
Sbjct: 14 PQGGTVKV-------GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 316 ALFEKSVSITL--FNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ + + D AG Y C S L+
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 57.0 bits (138), Expect = 2e-10
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ T+ G + + C + + W NG + S L ++G
Sbjct: 14 LTDQTVNL-------GKEICLKCEISENIPGK--WTKNGLPVQESD-RLKVVQKG----- 58
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLP 357
+ + + N D G+Y + ++ +
Sbjct: 59 RIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISG 96
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 59.1 bits (142), Expect = 3e-10
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 253 KAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEE 312
+ + + +G V ++C Y P ILW N + + D
Sbjct: 106 DGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGS 163
Query: 313 EGDALFEKSVSITLFNVTDL-DAGEYTCYAENIRGNAS 349
+ D L +L ++L +G Y CY + +
Sbjct: 164 DEDHL-------SLKEFSELEQSGYYVCYPRGSKPEDA 194
Score = 43.3 bits (101), Expect = 6e-05
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 16/79 (20%)
Query: 268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLF 327
+ + G+V ++C I W +G+++ + E L
Sbjct: 11 KVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLT-------------EDKKKWNLG 54
Query: 328 NVTDLDAGEYTCYAENIRG 346
+ G Y C +
Sbjct: 55 SNAKDPRGMYQCKGSQNKS 73
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 55.8 bits (135), Expect = 5e-10
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 11/93 (11%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLE---EEEGD 315
P + E + G V M+ V + ++W+ NG L +++G
Sbjct: 8 PVLIVTPLEDQQVFV-GDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNA 348
+ +V D G Y + A
Sbjct: 66 -----RHILIFSDVVQEDRGRYQVITNGGQCEA 93
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 60.1 bits (145), Expect = 5e-10
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 14/100 (14%)
Query: 257 FACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGD 315
+ +++ ++ T++C +PEPT W L +G
Sbjct: 215 YPPEVSISGYDNNWYLG-QNEATLTCDARSNPEPTGYNWSTTMGPLPPF-----AVAQGA 268
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
L + V C N G E+++
Sbjct: 269 QL-------LIRPVDKPINTTLICNVTNALGARQAELTVQ 301
Score = 57.4 bits (138), Expect = 4e-09
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 4/98 (4%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P T + V C G P I W + + N+S
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQ---VPGFLSGTV 173
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ L + +D TC E+ ++++L
Sbjct: 174 TVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL 211
Score = 41.6 bits (97), Expect = 5e-04
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 25/114 (21%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-----ILWLLNGQVLHNSSFDLLEEEE- 313
P V G +VT+ CY+ + W +G+ + F +
Sbjct: 7 PTQVPGFL-------GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSY 59
Query: 314 -----------GDALFEKSVSITLFNVTDLDAGEYTCYAEN-IRGNASGEISLD 355
++ S+ +F + D G YTC +G+ S +I L
Sbjct: 60 SESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 60.6 bits (146), Expect = 5e-10
Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 17/93 (18%)
Query: 262 NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS 321
+T + + G ++T++ P++ L
Sbjct: 99 GLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTL------------- 144
Query: 322 VSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ + D+G +TC + +I +
Sbjct: 145 ---SVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174
Score = 52.9 bits (126), Expect = 1e-07
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 11/85 (12%)
Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEK--------- 320
V+ + G V ++C W + Q+ + + L ++
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 321 --SVSITLFNVTDLDAGEYTCYAEN 343
+ + + N+ D+ Y C E+
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVED 88
Score = 43.6 bits (102), Expect = 1e-04
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 20/90 (22%)
Query: 270 VIREAGGNVTMSCYVYGDPEPTIL--WLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLF 327
V+R ++C V+G P ++ L + S
Sbjct: 291 VMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK-----------------REKAV 333
Query: 328 NVTDLDAGEYTCYAENIRGNASGEISLDLP 357
V + +AG + C + G E ++ +
Sbjct: 334 WVLNPEAGMWQCLLSD-SGQVLLESNIKVL 362
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 57.1 bits (137), Expect = 6e-10
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 24/122 (19%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
+ I +++V+ AG + + + GDP PT++W + + + D
Sbjct: 15 KIHLDCPGRIPDTIVVV-AGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 73
Query: 316 ALF-----------------------EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352
+ T+ D G YT +N G +
Sbjct: 74 TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 133
Query: 353 SL 354
++
Sbjct: 134 TV 135
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 55.5 bits (134), Expect = 7e-10
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 258 ACPPNVTIKESMVIREA--GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD 315
+ P ++ + V V ++C + + W +GQ + S L+ + +G
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESE-LLVVKMDG- 62
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + L D+GE+ C E +
Sbjct: 63 ----RKHRLILPEAKVQDSGEFECRTEGVSAFFG 92
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 55.1 bits (133), Expect = 1e-09
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P + + GG V + DP+ + W NGQ + S+ + E +G
Sbjct: 15 DPAYQVDK-------GGRVRFVVEL-ADPKLEVKWYKNGQEIRPST-KYIFEHKGC---- 61
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + N D EY A + + +
Sbjct: 62 -QRILFINNCQMTDDSEYYVTAGDEKCSTE 90
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 60.2 bits (146), Expect = 1e-09
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 6/100 (6%)
Query: 250 DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLL 309
D P +K G + C V P + W + + L S +
Sbjct: 472 RDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMK 531
Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
D +T+ V D GEYT A+N G
Sbjct: 532 RYNGNDY------GLTINRVKGDDKGEYTVRAKNSYGTKE 565
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 59.0 bits (142), Expect = 1e-09
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 260 PPNVTIK--ESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDA 316
P VTI+ + + +V ++C +P T W L E +
Sbjct: 231 EPEVTIEGFDGNWYLQ-RMDVKLTCKADANPPATEYHWTTLNGSLPKGV-----EAQNRT 284
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
LF + AG Y C A N G SG++ ++
Sbjct: 285 LF------FKGPINYSLAGTYICEATNPIGTRSGQVEVN 317
Score = 48.6 bits (115), Expect = 3e-06
Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 9/101 (8%)
Query: 260 PPNVTIKESMVIR----EAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
P N V+R + + +C G P + W + E
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ----EIRNP 186
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ L + C ++L+
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN 227
Score = 37.0 bits (85), Expect = 0.014
Identities = 16/116 (13%), Positives = 28/116 (24%), Gaps = 17/116 (14%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP----TILWLLNGQVLHNSSFDLLEEEEGD 315
P V + G +V + C + W + +
Sbjct: 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73
Query: 316 ALFE------------KSVSITLFNVTDLDAGEYTCYAEN-IRGNASGEISLDLPE 358
L +I L + D G Y C GN +++L +
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA 129
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 54.6 bits (132), Expect = 1e-09
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDAL 317
P + E + G +V + C + P + WL + + + S +D++ E L
Sbjct: 8 PAAIIKPLEDQWVAP-GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + DAGEYTC E + AS
Sbjct: 66 -------VIRGASLKDAGEYTCEVEASKSTAS 90
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 58.7 bits (141), Expect = 1e-09
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 10/96 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP+ + + + + C + Y I W N Q L + +
Sbjct: 128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ----- 182
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
++ + N D+G Y CY +I +
Sbjct: 183 ----NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214
Score = 56.8 bits (136), Expect = 7e-09
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 6/100 (6%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP----TILWLLNGQVLHNSSFDLLEEEEGD 315
I + + G ++C I W + F +
Sbjct: 228 HRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSS 287
Query: 316 ALFEKSVSITLFNVTDLDAGE-YTCYAENIRGNASGEISL 354
++ ++ NVT+ G YTC N + + ++
Sbjct: 288 GGITEA-TLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 37.5 bits (86), Expect = 0.010
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 21/100 (21%)
Query: 260 PPNVTIKESMVIREAGGNVTMSC---------YVYGDPEPTILWLLNGQVLHNSSFDLLE 310
P + + G + C + Y D + + W G+ + +
Sbjct: 29 PSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV-- 86
Query: 311 EEEGDALFEKSVSITLFNVTDLDAGE-YTCYAENIRGNAS 349
+ G + + N T D+ Y C G+
Sbjct: 87 -KNG--------DLWIANYTSNDSHRRYLCTVTTKNGDCV 117
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 54.3 bits (131), Expect = 2e-09
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
+ G + T+SC V + + W +G+ L +SS + E G
Sbjct: 12 AKEQPAHREVQAEA-GASATLSCEV-AQAQTEVTWYKDGKKLSSSS-KVRVEAVGC---- 64
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + + +AGEY+C A + +
Sbjct: 65 -TRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 57.6 bits (139), Expect = 2e-09
Identities = 35/226 (15%), Positives = 64/226 (28%), Gaps = 54/226 (23%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP V++ + VT+ C V P + W LNG S+
Sbjct: 8 PPWVSVFQ-------EETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSY---------- 50
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGI 378
+ + + D+GEY C S I L++ L +S
Sbjct: 51 ------RITSASVNDSGEYRCQRGL--SGRSDPIQLEIHRGWLLLQVSSR---------- 92
Query: 379 SVCVVSVIVSIGMSFCV-CRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHT 437
+ + G + C A + K + ++ F L + + T
Sbjct: 93 -------VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGT 145
Query: 438 GSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPP 483
C +G + +T++ P ++ P
Sbjct: 146 YHCSGMGKHR----------YTSAGISVTVKELFPAPVLNASVTSP 181
Score = 47.2 bits (112), Expect = 6e-06
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 20/100 (20%)
Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLL-----NGQVLHNSSFDLL 309
+E P + + + E G VT+SC + L L + L +
Sbjct: 166 KELFPAPVLNASVTSPLLE-GNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRN---- 220
Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
S + D+G Y C A GN
Sbjct: 221 ----------TSSEYQILTARREDSGLYWCEAATEDGNVL 250
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 53.9 bits (130), Expect = 3e-09
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNS-SFDLLEEEEGDALFEKSVSIT 325
E G V + C V + + + W NG+ + EG K +
Sbjct: 15 EDTTAYC-GERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEG-----KKHILI 67
Query: 326 LFNVTDLDAGEYTCYAENIRGNAS 349
+ T DA EY+ + +A
Sbjct: 68 IEGATKADAAEYSVMTTGGQSSAK 91
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 58.3 bits (140), Expect = 3e-09
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 252 VKAQEFACPPNVTIKESMVIREA--GGNVTMSCYVY----GDPEPTILWLLNGQVLHNSS 305
V + + A PP + V+ E G + + C VY D + W ++G+ + +
Sbjct: 216 VGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDIT 275
Query: 306 FDLLEEEEGDALFEK----SVSITLFNVTDLD-AGEYTCYAENIRGNASGEISL 354
D+ E + + +++ VT D Y C+A + +G + +
Sbjct: 276 IDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329
Score = 47.6 bits (112), Expect = 8e-06
Identities = 28/248 (11%), Positives = 56/248 (22%), Gaps = 28/248 (11%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
+ + T++W Q E EK + D
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD-VLWFRPTLLNDT 91
Query: 335 GEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFC 394
G YTC N + L + + DS + + + V + + I C
Sbjct: 92 GNYTCMLRNTTYCSKVAFPL---------EVVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142
Query: 395 ---VCRAHEHKNKR---RKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPD 448
K++ + + L + ++ +C
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVV------ 196
Query: 449 MELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPPEFSSNH--LPTSTYGNIFISVSVSQ 506
+ T+ V + PP ++H + I +V
Sbjct: 197 ----TYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF 252
Query: 507 EPPGSDPP 514
Sbjct: 253 SFLMDSRN 260
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 58.3 bits (140), Expect = 3e-09
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 26/97 (26%)
Query: 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
CP N T E T C +G+P P + L +G
Sbjct: 376 CPGNWTWPE-------NSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------------- 415
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
VT G Y C A + +G + E++++
Sbjct: 416 ------ESVTVTRDLEGTYLCRARSTQGEVTREVTVN 446
Score = 54.9 bits (131), Expect = 4e-08
Identities = 36/236 (15%), Positives = 67/236 (28%), Gaps = 21/236 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG---DPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
P V + + G N+T+ C V G T++ L + L E
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE---- 141
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVL 376
V+ T+ D ++C E E+ + T + LV
Sbjct: 142 -----VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS 196
Query: 377 GISVCV---VSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTT 433
+ V +V+ S+ F V A H +R + + K + V+
Sbjct: 197 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE 256
Query: 434 DRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDP------QVSVFPPPP 483
+C + E ++ P ++ + V + P
Sbjct: 257 GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAK 312
Score = 41.8 bits (97), Expect = 6e-04
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 22/91 (24%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
PNV + + V G VT+ C + + T+ + + +
Sbjct: 285 APNVILTKPEV--SEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQL------------- 329
Query: 320 KSVSITLFNVTDLDAG-EYTCYAENIRGNAS 349
L T D G ++C A
Sbjct: 330 ------LLKATPEDNGRSFSCSATLEVAGQL 354
Score = 38.7 bits (89), Expect = 0.005
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 15/112 (13%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
++ S VI GG+V ++C D + + L
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPMLLGI--------ETPLP------KKELLLPGN 47
Query: 323 SITLFNVTDL-DAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYM 373
+ ++ ++++ + + CY+ G ++ + L + L+ SW
Sbjct: 48 NRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQP 99
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 55.5 bits (133), Expect = 5e-09
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 5/95 (5%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
P EAG +T+ C V I L ++ + F LE+ + +
Sbjct: 91 FPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF--LEDADRKS 148
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGE 351
L KS+ +T V + C A+
Sbjct: 149 LETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSV 183
Score = 53.2 bits (127), Expect = 3e-08
Identities = 28/191 (14%), Positives = 52/191 (27%), Gaps = 40/191 (20%)
Query: 267 ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITL 326
ES + + G +V+++C G P W N + ++T+
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVT---------NEGTTSTLTM 58
Query: 327 FNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVI 386
V+ + Y C A I +++ + +S
Sbjct: 59 NPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIH----------------LSGP 102
Query: 387 VSIGMSFCV-CRAHE-----------HKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTD 434
+ G V C + K + + + E K L+V+ T
Sbjct: 103 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVI 162
Query: 435 RHTG---SCEA 442
G C A
Sbjct: 163 EDIGKVLVCRA 173
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 53.1 bits (128), Expect = 5e-09
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS-FDLLEEEEGDAL 317
P T ++ E G T+ C + + W + L + + L ++
Sbjct: 8 PARFTQDLKTKEASE-GATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDG----- 59
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + +++ DAGEY+C R +A+
Sbjct: 60 --TRCELQIHDLSVADAGEYSCMCGQERTSAT 89
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 55.1 bits (132), Expect = 8e-09
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
++ + + +VT++C D I WL N Q L + L +
Sbjct: 110 VTQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNS----- 163
Query: 320 KSVSITLFNVTDLDAGEYTCYAENIRGNA-SGEISLD 355
+ + + DAGEY C N S I LD
Sbjct: 164 ---ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD 197
Score = 39.6 bits (92), Expect = 0.001
Identities = 13/98 (13%), Positives = 23/98 (23%), Gaps = 19/98 (19%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHN----------SSFDLL 309
PP V NV + + W + +
Sbjct: 8 PPQVA---------EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTG 58
Query: 310 EEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN 347
+ G + + S+ +T D G YT +
Sbjct: 59 QAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYR 96
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 52.3 bits (126), Expect = 9e-09
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
T + ++ + E G +C P T+ W L S +EG
Sbjct: 8 ANCFTEELTNLQVEE-KGTAVFTCKT-EHPAATVTWRKGLLELRASG-KHQPSQEGL--- 61
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
++ +T+ + D+ YTC + A
Sbjct: 62 --TLRLTISALEKADSDTYTCDIGQAQSRAQ 90
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 52.5 bits (126), Expect = 9e-09
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
V ++C + P + W +G+ + S LL ++E + L V D+
Sbjct: 28 LERVVLTCEL-CRPWAEVRWTKDGEEVVESP-ALLLQKEDT-----VRRLVLPAVQLEDS 80
Query: 335 GEYTCYAENIRGNAS 349
GEY C ++ + +
Sbjct: 81 GEYLCEIDDESASFT 95
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 56.8 bits (138), Expect = 1e-08
Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 21/166 (12%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN---SGIREVHRDTFKYLTILVEVD 111
S ++ L++++N + + + L +L+ + L SG V L +
Sbjct: 126 SGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Query: 112 LSDNQIAWLHQDTF-LGN-DRLKVLYLNGNPITELRAGQFP---KLPYLKTIELQHCQIH 166
+S N+I + L+ L ++ N + P L+ +++ ++
Sbjct: 185 ISGNKI----SGDVDVSRCVNLEFLDVSSNNFS----TGIPFLGDCSALQHLDISGNKLS 236
Query: 167 SVHKDALIHLTALESLNLNGNRLK-HLSESVFFPTPNLKTLSLDGN 211
A+ T L+ LN++ N+ + +L+ LSL N
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAEN 279
Score = 51.8 bits (125), Expect = 5e-07
Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 32/170 (18%)
Query: 58 QVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREV--HRDTFKYLTILVEVDLSD 114
+ L L+N+ I+ + +L + L + + + + L +++S
Sbjct: 80 ESLFLSNSHING----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135
Query: 115 NQIAWLHQDTFLGN-DRLKVLYLNGNPITELRAGQFP-------KLPYLKTIELQHCQIH 166
N + + + + + L+VL L+ N I+ G LK + + +I
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSIS----GANVVGWVLSDGCGELKHLAISGNKIS 191
Query: 167 SVHKDALI---HLTALESLNLNGNRLKHLSESV--FFPTPNLKTLSLDGN 211
+ LE L+++ N + S + L+ L + GN
Sbjct: 192 GD-----VDVSRCVNLEFLDVSSN---NFSTGIPFLGDCSALQHLDISGN 233
Score = 48.8 bits (117), Expect = 4e-06
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 104 LTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP------KLPYLKT 157
LT L + LS++ I F + L L L+ N ++ G LK
Sbjct: 76 LTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLS----GPVTTLTSLGSCSGLKF 130
Query: 158 IELQHCQIH-SVHKDALIHLTALESLNLNGNRL-KHLSESVFFPT--PNLKTLSLDGN 211
+ + + + L +LE L+L+ N + LK L++ GN
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Score = 45.7 bits (109), Expect = 4e-05
Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 36/177 (20%)
Query: 53 LDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN---SGIREVHRDTFKYLTILVE 109
L + + LDL++N S LQ +YL+N +G ++ T + LV
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--KIP-PTLSNCSELVS 422
Query: 110 VDLSDNQIAWLHQDT-----FLGN-DRLKVLYLNGNPITELRAGQFP----KLPYLKTIE 159
+ LS N + + LG+ +L+ L L N + G+ P + L+T+
Sbjct: 423 LHLSFNYL------SGTIPSSLGSLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLI 472
Query: 160 LQHCQIHSVHKDALIHLTALESLNLNGNRLKHLSESVFFPT-----PNLKTLSLDGN 211
L + L + T L ++L+ NRL + P NL L L N
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRL-----TGEIPKWIGRLENLAILKLSNN 524
Score = 45.3 bits (108), Expect = 6e-05
Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 33/174 (18%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSIGLL--NLQRIYLKN---SGI--REVHRDTFKYLTIL 107
++VLDL+ N+ + E +S+ L +L + L + SG + ++ L L
Sbjct: 343 RGLKVLDLSFNE---FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 108 VEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFP----KLPYLKTI 158
L +N L + L L+L+ N ++ G P L L+ +
Sbjct: 400 ---YLQNNGFTGKIPPTLSNCS-----ELVSLHLSFNYLS----GTIPSSLGSLSKLRDL 447
Query: 159 ELQHCQIHSVHKDALIHLTALESLNLNGNRLK-HLSESVFFPTPNLKTLSLDGN 211
+L + L+++ LE+L L+ N L + NL +SL N
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNN 500
Score = 44.5 bits (106), Expect = 8e-05
Identities = 38/203 (18%), Positives = 61/203 (30%), Gaps = 53/203 (26%)
Query: 49 LPSTLDSDIQVLDLNNNKIS----------------------YLTKEAFKSIGLL-NLQR 85
+P +Q L L NK + + G L+
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 86 IYLKNSGIR-EVHRDTFKYLTILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGN 139
+ L ++ E+ DT + L +DLS N+ L + L L L+ N
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA----SLLTLDLSSN 378
Query: 140 PITELRAGQFP------KLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL---- 189
+ G L+ + LQ+ L + + L SL+L+ N L
Sbjct: 379 NFS----GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 190 -KHLSESVFFPTPNLKTLSLDGN 211
L L+ L L N
Sbjct: 435 PSSLGSL-----SKLRDLKLWLN 452
Score = 36.8 bits (86), Expect = 0.021
Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 39/176 (22%)
Query: 45 NFT-ALPSTLD--SDIQVLDLNNNKIS-----------------YLTKEAFKSIG-LLNL 83
+F+ +P+ L + LDLN N + ++ + + I
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 84 QRIYLKNSGIREVHR--DTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPI 141
+ + + + + L+ +++ TF N + L ++ N +
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 142 TELRAGQFP----KLPYLKTIELQH----CQIHSVHKDALIHLTALESLNLNGNRL 189
+ G P +PYL + L H I + L L L+L+ N+L
Sbjct: 645 S----GYIPKEIGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDLSSNKL 692
Score = 32.2 bits (74), Expect = 0.57
Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 14/147 (9%)
Query: 49 LPSTLD--SDIQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKN---SGIREVHRDTFK 102
+P + ++ +L L+NN + +G +L + L +G + FK
Sbjct: 506 IPKWIGRLENLAILKLSNNS---FSGNIPAELGDCRSLIWLDLNTNLFNG--TIPAAMFK 560
Query: 103 YLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQH 162
+ ++ + ++ D + N +R+ Q +L +
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMK---KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 163 CQIHSVHKDALIHLTALESLNLNGNRL 189
+ ++ L+++ N L
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNML 644
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 51.6 bits (124), Expect = 2e-08
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 15/96 (15%)
Query: 255 QEFACPP-NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEE 313
F+ P +V + G + W G + S+ E
Sbjct: 9 SAFSKKPRSVEVAA-------GSPAVFEAET-ERAGVKVRWQRGGSDISASN-KYGLATE 59
Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
G ++T+ V D G Y A + +
Sbjct: 60 GT-----RHTLTVREVGPADQGSYAVIAGSSKVKFD 90
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 51.6 bits (124), Expect = 2e-08
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P + + + E GG T+ C + P + W VL +EG
Sbjct: 8 PVRFQEALKDLEVLE-GGAATLRCVLSSVAAP-VKWCYGNNVLRPGD-KYSLRQEGA--- 61
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + + N+ D+G Y+C + +A+
Sbjct: 62 --MLELVVRNLRPQDSGRYSCSFGDQTTSAT 90
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 53.4 bits (128), Expect = 2e-08
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 17/89 (19%)
Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
+I N T++C V + + + L + T+
Sbjct: 105 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-----------------QKTMSYQ 147
Query: 330 TDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ C A N S ++ PE
Sbjct: 148 WTNLRAPFKCKAVNRVSQESEMEVVNCPE 176
Score = 41.5 bits (97), Expect = 2e-04
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 275 GGNVTMSCYVY--GDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL-FEKSVSITLFNVTD 331
G + ++ + D + W ++ + + A + + + N+T
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 332 LDAGEYTCYAENIRGNASGEISLDL 356
D+G Y + G +LDL
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDL 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 55.1 bits (133), Expect = 3e-08
Identities = 31/221 (14%), Positives = 69/221 (31%), Gaps = 51/221 (23%)
Query: 57 IQVLDLNNNKIS-----YLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL------- 104
I L+L N + L + +I N+ + L+ + + L
Sbjct: 140 ITSLNLRGNDLGIKSSDELI-QILAAIPA-NVNSLNLRGNNLAS---KNCAELAKFLASI 194
Query: 105 -TILVEVDLSDNQI--------AWLHQDTFLGNDRLKVLYLNGNPITELRAGQF----PK 151
+ +DLS N + A++ + + L L N +
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSI---PNHVVSLNLCLNCLHGPSLENLKLLKDS 251
Query: 152 LPYLKTIELQHCQIHSVHKD-------ALIHLTALESLNLNGNRL-----KHLSESVFFP 199
L +L+T+ L + + ++ K+ A ++ + ++ NG + +S +
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL 311
Query: 200 TPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTE 240
+ SL + L + + + P E
Sbjct: 312 SGKADVPSL------LNQCLIFAQKHQTNIEDLNIPDELRE 346
Score = 49.7 bits (119), Expect = 2e-06
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 38/189 (20%)
Query: 57 IQVLDLNNNKIS-----YLTKEAFKSIGL----LNLQRIYLKNSGIREVHRDTFKYLTIL 107
+ L+L+ N + L + +I LNL +L E+ + +
Sbjct: 53 VTSLNLSGNSLGFKNSDELV-QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111
Query: 108 VEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITE---------LRAGQFPKLP 153
+DL N + Q + L L GN + L A
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA---- 167
Query: 154 YLKTIELQHCQIHSVH----KDALIHL-TALESLNLNGNRL-----KHLSESVFFPTPNL 203
+ ++ L+ + S + L + ++ SL+L+ N L L+ ++
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227
Query: 204 KTLSLDGNP 212
+L+L N
Sbjct: 228 VSLNLCLNC 236
Score = 47.4 bits (113), Expect = 7e-06
Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 38/188 (20%)
Query: 57 IQVLDLNNNKIS-----YLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYL------- 104
+ LDL+ N + L +AF + ++ + L + + L
Sbjct: 24 VTSLDLSLNNLYSISTVELI-QAFANTP-ASVTSLNLSGNSLGF---KNSDELVQILAAI 78
Query: 105 -TILVEVDLSDNQI-----AWLHQDTFLGNDRLKVLYLNGNPITE-----LRAGQFPKLP 153
+ ++LS N + L + + VL L N + +
Sbjct: 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138
Query: 154 YLKTIELQHCQIH--SVHK--DALIHL-TALESLNLNGNRL-----KHLSESVFFPTPNL 203
+ ++ L+ + S + L + + SLNL GN L L++ + ++
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198
Query: 204 KTLSLDGN 211
+L L N
Sbjct: 199 TSLDLSAN 206
Score = 45.1 bits (107), Expect = 4e-05
Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 45/194 (23%)
Query: 55 SDIQVLDLNNNKISYLTKEAF--------KSIGLLNLQRIYLKNSGIR---EVHRDTFKY 103
I VLDL N S + F SI LNL+ L ++
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168
Query: 104 LTILVEVDLSDNQIAWLHQDT---FLG------NDRLKVLYLNGNPITE------LRAGQ 148
+ L +L N + L + L L+ N +
Sbjct: 169 VNSL---NLRGNNL----ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221
Query: 149 FPKLPYLKTIELQHCQIHSVH----KDALIHLTALESLNLNGNRLKHLSE-------SVF 197
++ ++ L +H K L L+++ L+ + +K++S+ + F
Sbjct: 222 SIP-NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280
Query: 198 FPTPNLKTLSLDGN 211
+ + +G
Sbjct: 281 PNIQKIILVDKNGK 294
Score = 37.0 bits (86), Expect = 0.016
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 17/100 (17%)
Query: 128 NDRLKVLYLNGNPITE------LRAGQFPKLPYLKTIELQHCQIHSVHKDALIHL----- 176
+ L L+ N + ++A + ++ L + + D L+ +
Sbjct: 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPA-SVTSLNLSGNSLGFKNSDELVQILAAIP 79
Query: 177 TALESLNLNGNRL-----KHLSESVFFPTPNLKTLSLDGN 211
+ SLNL+GN L L +++ + L L N
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119
Score = 32.8 bits (75), Expect = 0.36
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 172 ALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSLDGN 211
+ SL+L+ N L L ++ ++ +L+L GN
Sbjct: 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 52.7 bits (126), Expect = 3e-08
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP V +S G + C P T W + + E +
Sbjct: 83 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 142
Query: 319 EKSVSITLFNVT-DLDAGEYTCYAENIRGNASGEISLD 355
+ + + N+ + D G+Y C + +G+ I+L
Sbjct: 143 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
Score = 52.0 bits (124), Expect = 7e-08
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 18/88 (20%)
Query: 273 EAGGNVTMSCYVYGDPEPTI--LWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVT 330
+ G + ++C + WL G VL + +
Sbjct: 11 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-------------GQKTEFKVDS 57
Query: 331 DLDAGEYTCYAENIRGNASGEISLDLPE 358
D GEY+C G ++ L
Sbjct: 58 DDQWGEYSCVFLP---EPMGTANIQLHG 82
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 50.8 bits (122), Expect = 4e-08
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 260 PPNVTIK-ESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P T + E G + C + W + L + L ++
Sbjct: 19 PIKFTEGLRNEEATE-GATAVLRCELSKMAPVE--WWKGHETLRDGDRHSLRQDGARC-- 73
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + + DAGEY C R +A
Sbjct: 74 ----ELQIRGLVAEDAGEYLCMCGKERTSAM 100
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 53.0 bits (126), Expect = 7e-08
Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 26/145 (17%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY---GDPEPTILWLLNGQ--------VLHNSSFDL 308
P +T+ + G +V M C V + WL + + + S+ +
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 309 LEEEEGD------ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLA 362
+ F S+ L +V D G YTC + + ++L
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL------ 118
Query: 363 TTLSKTDSWYMLVLGISV---CVVS 384
L + + +G + C +
Sbjct: 119 WVLPEEPRDLRVRVGDTTQMRCSIQ 143
Score = 48.7 bits (115), Expect = 2e-06
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 21/117 (17%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEP---TILWLLNG-------QVLHNSSFDLLEEE 312
+ + + G M C + E + W+ + VL S +
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180
Query: 313 EGDALFEKSV-----------SITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ F V SI L V + D G YTC + + I L + +
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 51.4 bits (123), Expect = 9e-08
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 16/95 (16%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEG 314
E + V +E + + C+ + + + +L NG+
Sbjct: 85 EVHIGWLLLQAPRWVFKE-EDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH--------- 134
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + T D+G Y C N S
Sbjct: 135 -----HNSDFHIPKATLKDSGSYFCRGLVGSKNVS 164
Score = 48.7 bits (116), Expect = 7e-07
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 26/97 (26%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
P ++ E +VT+ C PE + W N ++
Sbjct: 14 PQWYSVLE-------KDSVTLKCQGAYSPEDNSTQWFHNESLIS---------------- 50
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
++ S + T D+GEY C S + L+
Sbjct: 51 SQASSYFIDAATVNDSGEYRCQTNL--STLSDPVQLE 85
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 51.4 bits (123), Expect = 9e-08
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 16/91 (17%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
V + +E G + + C+ + D P + + NG+ S
Sbjct: 86 EWLVLQTPHLEFQE-GETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH------------- 131
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ ++ +G+Y C S
Sbjct: 132 -LDPTFSIPQANHSHSGDYHCTGNIGYTLFS 161
Score = 50.6 bits (121), Expect = 2e-07
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 26/97 (26%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP + + + +VT++C PE +I W NG ++ +
Sbjct: 11 PPWINVLQ-------EDSVTLTCQGARSPESDSIQWFHNGNLIPTHT------------- 50
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLD 355
F + D+GEYTC + S + L
Sbjct: 51 ---QPSYRFKANNNDSGEYTCQTGQ--TSLSDPVHLT 82
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 50.7 bits (121), Expect = 2e-07
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 16/91 (17%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
+ V +E + + C+ + + + +L NG+
Sbjct: 89 GWLLLQAPRWVFKE-EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH------------- 134
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + T D+G Y C N S
Sbjct: 135 -HNSDFYIPKATLKDSGSYFCRGLVGSKNVS 164
Score = 46.8 bits (111), Expect = 5e-06
Identities = 35/229 (15%), Positives = 62/229 (27%), Gaps = 59/229 (25%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
P + E +VT+ C PE + W N ++
Sbjct: 14 PQWYRVLE-------KDSVTLKCQGAYSPEDQSTQWFHNESLIS---------------- 50
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGI 378
++ S + T D+GEY C + S + L++ L+L
Sbjct: 51 SQASSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEV-------------HIGWLLLQA 95
Query: 379 SVCVV----SVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSITTTD 434
V + + C + ++ + + + + T D
Sbjct: 96 PRWVFKEEDPIHLR-------CHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKD 148
Query: 435 RHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPP 483
+ C L + S V ITI +S F PP
Sbjct: 149 SGSYFCRGLVGSKN----VSS-----ETVQITITQGLAVSTISSFFPPG 188
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 52.0 bits (125), Expect = 2e-07
Identities = 23/208 (11%), Positives = 60/208 (28%), Gaps = 49/208 (23%)
Query: 38 SALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSI--GLLNLQRIYLKNSGIR- 94
+ + L + + ++L + ++ +++ L +++ L+ + +
Sbjct: 90 TVVAA-----VL-GSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLGP 140
Query: 95 -------EVHRDTFKYLTILVEVDLSDNQIAWLHQDT--------FLGNDRLKVLYLNGN 139
++ +T L LS+N + GN + L L
Sbjct: 141 EACKDLRDLLLHDQCQITTL---RLSNNPL----TAAGVAVLMEGLAGNTSVTHLSLLHT 193
Query: 140 PITELRAGQF----PKLPYLKTIELQHCQIHSVH----KDALIHLTALESLNLNGNRL-- 189
+ + + L+ + + + A +LE L+L N L
Sbjct: 194 GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253
Query: 190 ---KHLSESVFFPTPN--LKTLSLDGNP 212
+ L + + +G
Sbjct: 254 EGRQVLRDLGGAAEGGARVVVSLTEGTA 281
Score = 43.6 bits (103), Expect = 1e-04
Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 30/172 (17%)
Query: 62 LNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIR---EVHRDTFKYLTILVEVDLSDNQI- 117
+ + E S+ LNL + + V L + +L+ Q+
Sbjct: 58 HYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEV---NLASCQLD 114
Query: 118 ----AWLHQDTFLGNDRLKVLYLNGNPITE-----LRAGQFPKLPYLKTIELQHCQI--H 166
L R + L L N + LR + T+ L + +
Sbjct: 115 PAGLRTLLP----VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA 170
Query: 167 SVHK--DALIHLTALESLNLNGNRL-----KHLSESVFFPTPNLKTLSLDGN 211
V + L T++ L+L L + L+ + L+ L++ N
Sbjct: 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYN 221
Score = 31.2 bits (71), Expect = 0.95
Identities = 19/168 (11%), Positives = 42/168 (25%), Gaps = 38/168 (22%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLL-----NLQRIYLKNSGIREVH----RDTFKYLTIL 107
+ L L + + E + + LQ + + +G + + L
Sbjct: 185 VTHLSLLHTGL---GDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL 241
Query: 108 VEVDLSDNQI-----AWLHQDTFL--GNDRLKVLYLNGNPITE---------------LR 145
+ L N++ L G R+ V G ++E
Sbjct: 242 ELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWD 301
Query: 146 AGQFPKLPYLKTIELQHCQIH----SVHKDALIHLTALESLNLNGNRL 189
+ + L +L+ + L + +L
Sbjct: 302 RARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349
Score = 31.2 bits (71), Expect = 1.0
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 26/111 (23%)
Query: 57 IQVLDLNNNKIS-----YLTKEAFKSIGLLNLQRIYLKNSGIREV--------------- 96
+++L L N++S L + G + + + + E
Sbjct: 241 LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSW 300
Query: 97 -HRDTFKYLTILVEVDLSDNQI----AWLHQDTFLGNDRLKVLYLNGNPIT 142
++L +L+ DL D++ W ++ L
Sbjct: 301 DRARVQRHLELLLR-DLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 49.9 bits (119), Expect = 3e-07
Identities = 15/108 (13%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 250 DDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDL 308
+ V + F+ + +V+ G + + C+ + +++ +G+ L
Sbjct: 77 EPVYLEVFSDWLLLQASAEVVM--EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--- 131
Query: 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN-ASGEISLD 355
++ +I++ N T D+G Y C + + + S +++
Sbjct: 132 -----------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT 168
Score = 48.4 bits (115), Expect = 9e-07
Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 26/110 (23%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVLHNSSFDLLEEEEGDALF 318
PP I + G NVT++C E + W NG +
Sbjct: 11 PPWNRIFK-------GENVTLTCNGNNFFEVSSTKWFHNGSLSE---------------- 47
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKT 368
E + S+ + N D+GEY C + N S + L++ L S
Sbjct: 48 ETNSSLNIVNAKFEDSGEYKCQHQQ--VNESEPVYLEVFSDWLLLQASAE 95
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 50.0 bits (119), Expect = 3e-07
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 18/102 (17%)
Query: 255 QEFACPPNVTIK-ESMVIREAGGNVTMSCYV-YGDPEPTILWLLNGQVLHNSSFDLLEEE 312
+ N+ + S + + + ++C V D + W G L +
Sbjct: 103 RILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP------- 155
Query: 313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+++++ +YTC AEN N S +S
Sbjct: 156 --------NLTVSWDPRIS-SEQDYTCIAENAVSNLSFSVSA 188
Score = 35.0 bits (80), Expect = 0.040
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 12/124 (9%)
Query: 275 GGNVTMSCYVYGDPEPT-ILWLLNGQVLH--------NSSFDLLEEEEGDAL-FEKSVSI 324
G +VT+ + I WL N L + + ++G L F +S S+
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72
Query: 325 TLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVS 384
L N+ D G Y ++ S L + + T+ + ++
Sbjct: 73 QLSNLKMEDTGSYRAQIST--KTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLT 130
Query: 385 VIVS 388
V
Sbjct: 131 CSVE 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 4e-07
Identities = 96/671 (14%), Positives = 170/671 (25%), Gaps = 285/671 (42%)
Query: 42 KDANFTA-LPSTLDSDIQ------VLDLNNNKISYLTKE-------AFKSI---GLLNLQ 84
++ F LP + +L + Y++ F + L +
Sbjct: 34 QE-QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 85 RIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLY----LNGNP 140
YL+ ++H + ++ ++ ++ +K + P
Sbjct: 93 NCYLEG---NDIH-------ALAAKLLQENDTTLVKTKEL------IKNYITARIMAKRP 136
Query: 141 ITE------LRA-------------GQFPKLPYLKTIELQHCQIHSVHK---DALIHLTA 178
+ RA GQ Y + EL+ ++ + LI +A
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--ELRD--LYQTYHVLVGDLIKFSA 192
Query: 179 LESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSK-------L 231
L L + + T L+ WL L
Sbjct: 193 --------ETLSELIRTTLDAEK-VFTQGLN------------ILEWLENPSNTPDKDYL 231
Query: 232 YSHPLSCTEP--GMLQTKH----------------------------------------W 249
S P+SC P G++Q H W
Sbjct: 232 LSIPISC--PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 250 DD----------------VKAQEFACPPNVTIKESMV-IREAGGNVTMSCYVYGDPEP-- 290
+ V+ E PN ++ S++ G P P
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAY--PNTSLPPSILEDSLENNE--------GVPSPML 339
Query: 291 TILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFN------VTDLDAGEYTCYAENI 344
+I L QV D + + K V I+L N V+
Sbjct: 340 SISNLTQEQV-----QDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-------------- 380
Query: 345 RGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNK 404
G SL L TL K G+ + +
Sbjct: 381 -GPPQ---SL----YGLNLTLRK-----------------AKAPSGLD-------QSRIP 408
Query: 405 RRKRKGKMKQSVSFNDQEKKLLDVSITTTDRHTGSCEALGSQPDMELIEQSLAMEQPPVH 464
+R K+K S F L V + H+ L P +LI + L
Sbjct: 409 FSER--KLKFSNRF-------LPV---ASPFHS---HLL--VPASDLINKDLVKN----- 446
Query: 465 ITIESHAVDPQVSVFPPPPEFSSNHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMPH 524
+ +A D Q+ V+ T ++ + GS ++D
Sbjct: 447 -NVSFNAKDIQIPVY---------D--TFDGSDL-------RVLSGSIS---ERIVDCII 484
Query: 525 RSVSVGTGPGTNPAYFATLPRRPRSKVIE--PSSLVRVGPKYDNMGPRVTAG-GASIL-- 579
R P + T + + +++ P +G + R G G ++
Sbjct: 485 RL----------PVKWETTTQFKATHILDFGPGGASGLGV----LTHRNKDGTGVRVIVA 530
Query: 580 SLPDATSTEDI 590
D +D
Sbjct: 531 GTLDINPDDDY 541
Score = 43.5 bits (102), Expect = 2e-04
Identities = 42/281 (14%), Positives = 75/281 (26%), Gaps = 106/281 (37%)
Query: 240 EPGM---LQTKH------WD--DVKAQE---FAC-------PPNVTI----KESMVIREA 274
E GM L W+ D ++ F+ P N+TI ++ IRE
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE- 1686
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD---------ALFEKSVSIT 325
N + + + ++ +S+ E+G AL +
Sbjct: 1687 --NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT--LMEKA 1742
Query: 326 LFNV------TDLDA-------GEYT---CYAE-----------NIRGNAS--------- 349
F DA GEY A+ RG
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 350 ------------GEISLDLPE---INLATTLSKTDSWYMLVLGISVCVV------SVIVS 388
G ++ + + + K W V +V V+
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL-------VEIVNYNVENQQYVA 1855
Query: 389 IGMSFCVCRAHE--HKNKRRKRK-GKMKQSVSFNDQEKKLL 426
G + + K +K ++++S+S + E L
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 31.6 bits (71), Expect = 1.0
Identities = 36/205 (17%), Positives = 62/205 (30%), Gaps = 96/205 (46%)
Query: 7 ILLAACLGTTGSPDWTDCPDTCRCKWTLGKKSAL---------CKDA-NFTALPSTLDSD 56
++ A + + W + + + A+ C +A T+LP ++ D
Sbjct: 277 LVTAVAIAE--TDSWES--------FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 57 IQVLDLNNNK--------ISYLTKEA-FKSIGLLNLQ-------RIYLKN-------SG- 92
L NN+ IS LT+E + N I L N SG
Sbjct: 327 ----SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 93 ----------IREV--------HRDTF---------KYLTI--------------LVEVD 111
+R+ R F ++L + L+ D
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 112 LSDNQIAWLHQD-------TFLGND 129
L N +++ +D TF G+D
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSD 467
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 51.0 bits (121), Expect = 5e-07
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 260 PPNVTIKESMVIREAGGNVTMSC-YVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P + ++ G +VT++C V + T+ W+L
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA---------GSHPSRWA 56
Query: 319 EKSVSITLFNVTDLDAGEYTCYAEN 343
+ L +V D+G Y+CY
Sbjct: 57 GMGRRLLLRSVQLHDSGNYSCYRAG 81
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 48.0 bits (114), Expect = 7e-07
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 263 VTIKESMVIREAGGNVTMSCYVY--------------GDPEPTILWLLNGQVLH---NSS 305
V + G + C + + NG+
Sbjct: 9 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 68
Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ E +++ E V++ + NV D G YTC+ + + L
Sbjct: 69 YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 8e-07
Identities = 79/537 (14%), Positives = 136/537 (25%), Gaps = 197/537 (36%)
Query: 53 LDSDIQVLDLNNNKISYLTKEAFKS----IGLLNLQRIYLKNSGIREV----HRD--TFK 102
+D + I + ++AF + ++ + L I + T +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 103 YLTIL-----------VEVDLSDNQIAWLHQ-----------DTFLGNDRLKVLYLNGNP 140
L VE L N +L T + ++ LY N N
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQ 124
Query: 141 ITELRAGQFPKL------PYLKT----IELQHCQIHSVH------KDALIHLTALESLNL 184
+ F K PYLK +EL+ + + K + AL+
Sbjct: 125 V-------FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCL- 172
Query: 185 NGNRLKHLSESVFF------PTP-----NLKTLSLDGNP-WCCDCH-----------LRS 221
+ + +F+ +P L+ L +P W +++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 222 FRNWLLKSKLYSHPLSCTEPGMLQTKHWDDV------KAQEFACPPNVTIKESMVIREAG 275
LLKSK Y + L +L +V A +C +T + V
Sbjct: 233 ELRRLLKSKPYENCLL-----VL-----LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 276 GNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG 335
T ++ D L +E +L K +
Sbjct: 283 AATT--THISLDHHS----------------MTLTPDEVKSLLLKYLDCRPQ-------- 316
Query: 336 EYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCV 395
DLP VL + +S+I
Sbjct: 317 -------------------DLPR---------------EVLTTNPRRLSIIAE------S 336
Query: 396 CRAHEHKNKRRKRKGKMKQS----VSFNDQE----KKLL--------DVSITT------- 432
R K K + S N E +K+ I T
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 433 TDRHTGSCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPPEFSSNH 489
D + + +L + SL +QP TI + + + H
Sbjct: 397 FDVIKSDVMVVVN----KLHKYSLVEKQPKES-TISIP--SIYLELKVKLENEYALH 446
Score = 42.9 bits (100), Expect = 3e-04
Identities = 82/544 (15%), Positives = 155/544 (28%), Gaps = 172/544 (31%)
Query: 37 KSALCKDANFTALPSTLDSDIQVLDLNNNKISYLT-KEAFKSIGLL-NLQRIYLKNSG-- 92
K+ + D +V + KI +L K +L LQ++ +
Sbjct: 163 KTWVALDVC---------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 93 ----------------IREVHRDTFKY------LTILVEVDLSDNQIAWLHQDTFLGNDR 130
I+ R K L +L+ V + + + F N
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAW----NAF--NLS 265
Query: 131 LKVLYLNGNP-ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
K+L +T+ + H + LT E +L
Sbjct: 266 CKILLTTRFKQVTDFLSAATTT--------------HISLDHHSMTLTPDEVKSL----- 306
Query: 190 KHLSESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKSKLYSHP------------LS 237
L + + +L L NP S R+ L + H L+
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 238 CTEPGMLQTKHWDDVKAQEFAC-PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT--ILW 294
EP + K +D + PP+ I P ++W
Sbjct: 365 VLEPAEYR-KMFDR-----LSVFPPSAHI----------------------PTILLSLIW 396
Query: 295 LLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENI----RGNASG 350
FD+++ + + K +L + E T +I +
Sbjct: 397 -----------FDVIKSDVMVVV-NKLHKYSLV---EKQPKESTISIPSIYLELKVKLEN 441
Query: 351 EISLDLPEINLATTLSKTDSWYMLVLGISVCVVSVIVSIGMSFCVCRAHEH-KNKRRKRK 409
E +L ++ DS ++ + S I H H KN +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-----------GH-HLKNIEHPER 489
Query: 410 GKMKQSVSFNDQ--EKKLLDVSITTTDRHTGS-CEALGSQPDMELIEQSLAMEQPPVHIT 466
+ + V + + E+K+ RH + A GS + ++Q + +I
Sbjct: 490 MTLFRMVFLDFRFLEQKI---------RHDSTAWNASGSILN--TLQQLKFYKP---YIC 535
Query: 467 IESHAVDPQVSV---FPPPPEFSSNHLPTSTYGNIFISVSVSQEPPGSDPPKYPDLIDMP 523
+ V+ F P E +L S Y ++ + +++ E + +
Sbjct: 536 DNDPKYERLVNAILDFLPKIE---ENLICSKYTDL-LRIALMAEDEA--------IFEEA 583
Query: 524 HRSV 527
H+ V
Sbjct: 584 HKQV 587
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 47.3 bits (112), Expect = 8e-07
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWL-LNGQVLHNSSFDLLEEEEGDALF 318
+T++E G +T+ C ++ WL +G + + + +L+ + L
Sbjct: 8 TETITVEE-------GQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH 60
Query: 319 EKS--VSITLFNVTDLDAGEYTCYA 341
+ +SIT+ NVT D G Y C
Sbjct: 61 HSANQLSITVPNVTLQDEGVYKCLH 85
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 48.8 bits (116), Expect = 9e-07
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 240 EPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLNG 298
E + +H +V A P +I + + + C G PEP + WL NG
Sbjct: 88 EKDAFKREHLAEVTLSVKADFPTPSISDFEI--PTSNIRRIICSTSGGFPEPHLSWLENG 145
Query: 299 QVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ L+ + + ++ E + L+ +VS L + + C + + + + +
Sbjct: 146 EELNAINTTVSQDPETE-LY--AVSSKL-DFNMTTNHSFMCLIKYGHLRVNQTFNWNTAK 201
Score = 38.4 bits (89), Expect = 0.003
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 270 VIREAGGNVTMSCY----VYGDPEPTILWLLNGQVLH---NSSFDLLEEEEGDALFEKS- 321
V +E T+SC V + I W +++ + ++ E + +F+ +
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63
Query: 322 -VSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+SI + + D G Y C +A L
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHL 97
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 49.3 bits (117), Expect = 9e-07
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 242 GMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD-PEPTILWLLN-GQ 299
G K ++K +V +K G + + C G P+P I W N G+
Sbjct: 105 GDFYEKALVELKVAALGSDLHVDVKGY-----KDGGIHLECRSTGWYPQPQIQWSNNKGE 159
Query: 300 VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ ++ + G L+ +V+ ++ + +C + S+ + +
Sbjct: 160 NIPTVEAPVVADGVG--LY--AVAASV-IMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213
Score = 46.2 bits (109), Expect = 9e-06
Identities = 15/113 (13%), Positives = 41/113 (36%), Gaps = 19/113 (16%)
Query: 263 VTIKESMVIREAGGNVTMSCYVY--------------GDPEPTILWLLNGQVLH---NSS 305
V ++ G + + C+++ + +G+ + ++
Sbjct: 7 VLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAP 66
Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ D + ++ + NVT D+G+Y CY ++ G+ + ++L
Sbjct: 67 YRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKV 117
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 48.9 bits (116), Expect = 1e-06
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
P V + + G N T+SC V G T+ L Q L SF E
Sbjct: 89 PDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSF----AGEPPR 144
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353
++ T+ + ++C AE +
Sbjct: 145 ARGAVLTATVLARREDHGANFSCRAELDLRPHGLGLF 181
Score = 30.8 bits (69), Expect = 0.91
Identities = 9/99 (9%), Positives = 25/99 (25%), Gaps = 17/99 (17%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILW--LLNGQVLHNSSFDLLEEEEGDAL 317
P ++ + E GG++ ++C L
Sbjct: 2 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGL------------ 49
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ ++ L ++ + + C+ R +
Sbjct: 50 --RWLARQLVDIRE-PETQPVCFFRCARRTLQARGLIRT 85
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 50.4 bits (119), Expect = 1e-06
Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 17/230 (7%)
Query: 268 SMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG------------- 314
++V AG +V + C +I + + N LL + EG
Sbjct: 339 TVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLL 398
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYML 374
+ + ++ L +T DAG Y C + + +
Sbjct: 399 EEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGE 458
Query: 375 VLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKGKMKQSVSFNDQEKKLLDVSIT-TT 433
L + S +C + + +G ++ D+ +L+ +++ T
Sbjct: 459 TLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPS-KAFVNCDENSRLVSLTLNLVT 517
Query: 434 DRHTG--SCEALGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPP 481
G C E +A+E+ + + +
Sbjct: 518 RADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEK 567
Score = 46.1 bits (108), Expect = 3e-05
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
VT + + E C ++ G+ +L + + S
Sbjct: 235 VTFHCA-LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDK---DGSF 290
Query: 323 SITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
S+ + + DAG Y C A + G
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQ 322
Score = 40.8 bits (94), Expect = 0.001
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 11/105 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYV--YGDPEPTILWLLNGQVLH---NSSFDLLEEEEG 314
P + + + G VT++C + L+ G +SS + G
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171
Query: 315 ------DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEIS 353
+ S+ + + DAG+Y C A + +
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216
Score = 40.4 bits (93), Expect = 0.001
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 13/95 (13%)
Query: 268 SMVIREAGGNVTMSCYV---YGDPEPTILWLLNG-----QVLHNSSFDLLEEEEG----- 314
V G +V+++CY + W G L +S + + G
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
+ + + + ++ D+G Y C S
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLS 102
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 46.8 bits (111), Expect = 1e-06
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 22/114 (19%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEP----TILWLLNG--------QVLHNSSFDLLE 310
+T E M+ + G + C PE I WL++ ++ S + +
Sbjct: 8 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYD 67
Query: 311 EEEG----------DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+ + L SI + N+ D G Y C + G A+ +I L
Sbjct: 68 DYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 46.4 bits (110), Expect = 1e-06
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 14/108 (12%)
Query: 254 AQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEP--TILWLLNGQVL----HNSSFD 307
N++ ++ GG++ + C++ + W Q+L + +
Sbjct: 4 TGTIETTGNISAEK-------GGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWH 56
Query: 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTC-YAENIRGNASGEISL 354
+ + + +TL ++T D GEY C Y G +G I L
Sbjct: 57 ISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFL 104
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 47.7 bits (113), Expect = 4e-06
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 151 KLPYLKTIELQHCQIHSVHKDALIHL----TALESLNLNGNRLKHLSESVFFPTPNLKTL 206
+P L ++ L + +++ + D + + L+ LNL+GN LK E L+ L
Sbjct: 168 NIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 225
Query: 207 SLDGNPWCCDCHL--RSFRNWLLK 228
LDGN CD ++ + + +
Sbjct: 226 WLDGNS-LCDTFRDQSTYISAIRE 248
Score = 39.2 bits (91), Expect = 0.002
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 37/136 (27%)
Query: 33 TLGKKSALCKDANFTALPSTLDS---DIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLK 89
L + + A ++ ++ L+L+NN++ L + SI
Sbjct: 145 AQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRL--DDMSSI----------- 191
Query: 90 NSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQ- 148
+ L ++LS N++ + + +L+ L+L+GN + + Q
Sbjct: 192 -----------VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQS 240
Query: 149 ---------FPKLPYL 155
FPKL L
Sbjct: 241 TYISAIRERFPKLLRL 256
Score = 37.3 bits (86), Expect = 0.010
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 128 NDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN 187
+ + L L G Q + + C ++ ++ L SLNL+ N
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQN----IDVVLNRRSCMAATLRI-IEENIPELLSLNLSNN 180
Query: 188 RLKHLS--ESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWLLKS 229
RL L S+ PNLK L+L GN + L + L+
Sbjct: 181 RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 224
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 48.1 bits (114), Expect = 6e-06
Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 17/106 (16%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYV-------YGDPEPTILWLLNGQVLHNSSFDLLEEE 312
P ES V++ N T C + + I+W N + + ++
Sbjct: 4 PCGYISPESPVVQ-LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRT 62
Query: 313 EGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
S+T ++ L+ TC + +
Sbjct: 63 AS--------SVTFTDIASLNIQ-LTCNILTFGQLEQNVYGITIIS 99
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral
protein complex, immune response, innate immunity,
structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens}
PDB: 1je6_A 1hyr_C 1b3j_A*
Length = 319
Score = 46.9 bits (112), Expect = 1e-05
Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 32/159 (20%)
Query: 260 PP--NVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEE-- 313
PP NVT E + GN+T++C T+ W +G L + + + +
Sbjct: 184 PPMVNVTCSEV-----SEGNITVTCRASSFYPRNITLTWRQDGVSLSH---NTQQWGDVL 235
Query: 314 --GDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSW 371
G+ ++ V+ + + +TCY E ++ + +P L
Sbjct: 236 PDGNGTYQTWVATR---IRQGEEQRFTCYME----HSGNHGTHPVPS---GKVLVLQSQR 285
Query: 372 YMLVLGISVCVVSVIVSIGMSFCVCRAHEHKNKRRKRKG 410
+S + ++ I + C+ K +G
Sbjct: 286 -TDFPYVSAAMPCFVIIIILCVPCCK-----KKTSAAEG 318
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 45.2 bits (107), Expect = 1e-05
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 20/101 (19%)
Query: 125 FLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTA------ 178
L +++ + + I + L Y++ I L C H + L L+
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC--HYIEDGCLERLSQLENLQK 114
Query: 179 -LESLNLNGNR------LKHLSESVFFPTPNLKTLSLDGNP 212
+ + + + L NLK L L P
Sbjct: 115 SMLEMEIISCGNVTDKGIIALH-----HFRNLKYLFLSDLP 150
Score = 36.4 bits (84), Expect = 0.010
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 107 LVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNP-ITE--LRA-GQFPKLPY-LKTIELQ 161
+ +D +D+ I + D G ++ + L I + L Q L + +E+
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122
Query: 162 HC-QIHSVHKDALIHLTALESLNLNG-NRLKHLSESVFFPTPNLKTLSLD 209
C + AL H L+ L L+ +K + V +L +L L
Sbjct: 123 SCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 42.8 bits (100), Expect = 2e-05
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL- 332
+G V ++C P ILW N + + D + D L +L ++L
Sbjct: 20 SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHL-------SLKEFSELE 70
Query: 333 DAGEYTCYAENIRGNAS 349
+G Y CY + +
Sbjct: 71 QSGYYVCYPRGSKPEDA 87
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 44.1 bits (104), Expect = 2e-05
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 17/89 (19%)
Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
+I N T++C V + + + L + T+
Sbjct: 100 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-----------------QKTMSYQ 142
Query: 330 TDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ C A N S ++ PE
Sbjct: 143 WTNLRAPFKCKAVNRVSQESEMEVVNCPE 171
Score = 40.7 bits (95), Expect = 4e-04
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLH---NSSFDLLEEEEGDALFE-KSVSITLFNVT 330
GNVT P +LW + NS F + + S S+T++N+T
Sbjct: 10 YGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 331 DLDAGEYTCYAENIRGNAS 349
D EY + NI
Sbjct: 69 SSDEDEYEMESPNITDTMK 87
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 42.5 bits (100), Expect = 2e-05
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 24/99 (24%)
Query: 252 VKAQEFACPP--NVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ---------V 300
VK + P NVT+ E GG ++C V + ++ W Q
Sbjct: 3 VKGSQGQFPLTQNVTVVE-------GGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKA 55
Query: 301 LHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339
L ++ +L+ + +SI++ +V+ D G+YTC
Sbjct: 56 LRDNRIELVRASWHE------LSISVSDVSLSDEGQYTC 88
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 45.6 bits (107), Expect = 3e-05
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG---DPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
P V + + G N+T+ C V G T++ L + L E
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE---- 141
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEI 352
V+ T+ D ++C E E+
Sbjct: 142 -----VTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172
Score = 44.5 bits (104), Expect = 6e-05
Identities = 28/155 (18%), Positives = 44/155 (28%), Gaps = 26/155 (16%)
Query: 224 NWLLKSKLYSHPLSC-------TEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGG 276
L++ + SC + L + Q F P S + E
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204
Query: 277 NVTMSCYVYGDP---EPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
T+ C + G E + L Q L+ + D+ + +VT D
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-----TYGNDSF----SAKASVSVTAED 255
Query: 334 AGEYTCYAENIRGNASGEISLDL-------PEINL 361
G I GN S E + P + L
Sbjct: 256 EGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290
Score = 30.2 bits (67), Expect = 2.0
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 17/113 (15%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILW--LLNGQVLHNSSFDLLEEEEGDALFEK 320
++ S VI GG+V ++C D + L + L
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG-------------NN 48
Query: 321 SVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYM 373
L NV + + CY+ G ++ + L + L+ SW
Sbjct: 49 RKVYELSNVQ--EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQP 99
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 43.7 bits (103), Expect = 3e-05
Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 17/88 (19%)
Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
+I N T++C V + + + L + T+
Sbjct: 110 MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-----------------QKTMSYQ 152
Query: 330 TDLDAGEYTCYAENIRGNASGEISLDLP 357
+ C A N S ++ P
Sbjct: 153 WTNLRAPFKCKAVNRVSQESEMEVVNCP 180
Score = 36.0 bits (83), Expect = 0.013
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEP-TILWLLNGQVL-----HNSSFDLLEEEE 313
PNV G NVT++ + + WL N + E
Sbjct: 6 VPNVNAIT-------GSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVF 58
Query: 314 GD--ALFEKSVSITLFNVTDLDAGEYTCYAENIRG 346
D L + + ++ ++NV+ D G+Y +
Sbjct: 59 KDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETE 93
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 42.5 bits (99), Expect = 4e-05
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 273 EAGGNVTMSCYVYGDP---EPTILWLLNGQVLHNSSFD----LLEEEEGDALFEKSVSIT 325
E G + + V G +PTI W G+ L S +E A +V +
Sbjct: 25 ETGKDAVVVAKVNGKELPDKPTIKWF-KGKWLELGSKSGARFSFKESHNSASNVYTVELH 83
Query: 326 LFNVTDLDAGEYTCYAENIRGNASGEISLD 355
+ V D G Y + S ++D
Sbjct: 84 IGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 45.2 bits (106), Expect = 4e-05
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 20/94 (21%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD-PEP---TILWLLNGQVLHNSSFDLLEEEEGD 315
V+I+ + AG T++ V GD P P T W + Q N++
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------- 51
Query: 316 ALFEKSVSITLFNVTDLDAGEYTCYAENIRGNAS 349
++T+ + T +AG Y ++ S
Sbjct: 52 ------ATLTVADATSENAGSYKVTVQDTDTMTS 79
Score = 41.7 bits (97), Expect = 4e-04
Identities = 12/103 (11%), Positives = 22/103 (21%), Gaps = 25/103 (24%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY---GDPEP-----TILWLLNGQVLHNSSFDLLEE 311
+ + +V + V G W V+ +
Sbjct: 92 LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ------ 145
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
IT+ T G YT +++ S
Sbjct: 146 -----------DITIQEFTADKNGVYTVKVWGESEDSAASAST 177
Score = 34.4 bits (78), Expect = 0.085
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY--------GDPEPTIL--WLLNGQVLHNSSFDLL 309
+ + ES + G ++++ V G P TI W L + + +
Sbjct: 185 NVDQDVVESKTV-ALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGS 243
Query: 310 EEEEGDALFEKSVSITLF--NVTDLDAGEYTCYAENIRGNASGEISL 354
E E F + LF + T D ++ C A+ + + +
Sbjct: 244 EVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 43.2 bits (101), Expect = 8e-05
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGD---PEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
P V + + G + T+ C V T+ + LH +F + A
Sbjct: 88 PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETF----GKAAPA 143
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAEN 343
E + + + ++C A
Sbjct: 144 PQEATATFNSTADREDGHRNFSCLAVL 170
Score = 28.6 bits (63), Expect = 4.1
Identities = 12/110 (10%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSV 322
V ++ + E G++ ++C +P + L E L ++
Sbjct: 5 VHVRPKKLAVEPKGSLEVNCST-TCNQPEVGGL--------------ETSLNKILLDEQA 49
Query: 323 SITLFNVTDL-DAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSW 371
+ V+++ C+ S ++ + + L+ +
Sbjct: 50 QWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTL 99
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 43.1 bits (101), Expect = 9e-05
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 4/98 (4%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P T + V C G P I W + + +S
Sbjct: 116 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQ---VPGFLSGTV 172
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ L + +D + TC E+ +++ L
Sbjct: 173 TVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSL 210
Score = 32.7 bits (74), Expect = 0.24
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 274 AGGNVTMSCYVYGDPEPT-----ILWLLNGQ----VLHNSSFDLLEEEEGDALFEKS--- 321
G +VT+ CY+ + W +G+ + + + E F +
Sbjct: 13 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 72
Query: 322 -----VSITLFNVTDLDAGEYTCYAENI-RGNASGEISL 354
S+ +F + D G YTC +G+ S +I L
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWL 111
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 44.4 bits (104), Expect = 9e-05
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Query: 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
++ V AG T C G L G + ++ ++
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS---R 219
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
S + N T DAG+Y C G +
Sbjct: 220 RFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAE 255
Score = 36.3 bits (83), Expect = 0.029
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 18/82 (21%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
G + + V P +W ++G + ++I +
Sbjct: 90 PPGLLNVYVKVNNGPLGNPIWNISG-------------DPTRTWNRAELAI-----STFW 131
Query: 334 AGEYTCYAENIRGNASGEISLD 355
Y E I G +++D
Sbjct: 132 PNFYQVIFEVITSGHQGYLAID 153
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 42.5 bits (99), Expect = 1e-04
Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 9/110 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVY-GDPEPTILWLLNGQVLHNSSFDLLEE------- 311
K ++ + E +C G+P P I W NGQ L E
Sbjct: 119 TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTV 178
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPEINL 361
E L + ++ L D + C A LD P +L
Sbjct: 179 REASGLLSLTSTLYLRLRKDDRDASFHCAAHY-SLPEGRHGRLDSPTFHL 227
Score = 34.4 bits (78), Expect = 0.068
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 23/111 (20%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILW-----------LLNGQVLHNSSFD 307
PP V + G +V + C G + + W L + ++ +
Sbjct: 7 PPLVEV-------MRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQV 59
Query: 308 LLEEEEGDALFEKSV---SITLFNVTDLDAGEYTCYAENIR-GNASGEISL 354
+ + G + + + L D +Y C G A L
Sbjct: 60 TMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARL 110
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 41.4 bits (96), Expect = 2e-04
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
+G +V ++C + D + + W NGQ L +K + + F+ + D
Sbjct: 13 SGTSVELTCPL--DSDENLKWEKNGQELPQKH-------------DKHLVLQDFSEVE-D 56
Query: 334 AGEYTCYAENIRGNAS 349
+G Y CY N
Sbjct: 57 SGYYVCYTPASNKNTY 72
Score = 37.9 bits (87), Expect = 0.003
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 20/98 (20%)
Query: 250 DDVKAQEFACPPNVTIKESMVIR----EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSS 305
DD K + + T K +++ G+V ++C G + TI WL +G ++ +
Sbjct: 93 DDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISPLN 149
Query: 306 FDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343
+ L N G Y C
Sbjct: 150 -------------ATKNTWNLGNNAKDPRGTYQCQGAK 174
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 39.9 bits (93), Expect = 2e-04
Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 14/91 (15%)
Query: 267 ESMVIREAGGNVTMSC-YVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS---- 321
V G VT+ C Y T W L+ ++KS
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 322 ---------VSITLFNVTDLDAGEYTCYAEN 343
VS+T+ N + D+G Y C E
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCCRVEI 94
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 39.9 bits (93), Expect = 3e-04
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 15/92 (16%)
Query: 267 ESMVIREAGGNVTMSC-YVYGDPEPT-ILWLLNGQVLHNSSFDLLEEEEGDALFEKS--- 321
E +I G VT+ C Y+ + W + +LL + + KS
Sbjct: 3 EDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKY 62
Query: 322 ----------VSITLFNVTDLDAGEYTCYAEN 343
VS+T+ N D+G Y C E
Sbjct: 63 TLLGKVQFGEVSLTISNTNRGDSGVYCCRIEV 94
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 42.2 bits (98), Expect = 3e-04
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 19/158 (12%)
Query: 49 LPSTLDSDIQVLDLNNNKISYLTKEAFKSIGL--LNLQRIYLKNSGIREVHRDTFKYLTI 106
L LD+ + +L + L+ L L + L +S + ++ L
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223
Query: 107 L-----VEVDLSDNQIAWLHQDTFLGNDR---LKVLYLNGNPITELRA---GQFPKLPYL 155
L VE D + DR LK L + + + LP L
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRP--LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281
Query: 156 KTIELQHCQIHSVHKDALI----HLTALESLNLNGNRL 189
+T+++ + L+ + L+ +N+ N L
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
Score = 34.5 bits (78), Expect = 0.086
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 14/117 (11%)
Query: 41 CKDANFTALPSTLDSDIQVLDLNNNKISYLT-------KEAFKSIGLLNLQRIYLKNSGI 93
D+ + + +++ L L Y + F NL+ + + ++
Sbjct: 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264
Query: 94 REVHRD---TFKYLTILVEVDLSDNQI----AWLHQDTFLGNDRLKVLYLNGNPITE 143
+ V + L L +D+S + A L D LK + + N +++
Sbjct: 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 42.1 bits (97), Expect = 5e-04
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 9/116 (7%)
Query: 228 KSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGD 287
S + ++ + ++ CP + GG + C
Sbjct: 501 WSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS- 559
Query: 288 PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAEN 343
+ W VL S + L +FN+++ D+G Y C +E
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLL--------IFNLSEGDSGVYQCLSEE 607
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 40.2 bits (94), Expect = 8e-04
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
P ++ + S V+ GGNVT+ C + G+ H + G
Sbjct: 96 TGAYIKPTLSAQPSPVVNS-GGNVTLQCDS-QVAFDGFILCKEGEDEHPQCLNSQPHARG 153
Query: 315 D--ALFEKSVSITLFNVTDLDAGEYTCYA 341
A+F ++ V+ Y CYA
Sbjct: 154 SSRAIF------SVGPVSPSRRWWYRCYA 176
Score = 32.5 bits (74), Expect = 0.24
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 8/75 (10%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G VT+ C G E L + + +E F + ++T
Sbjct: 19 GSPVTLRCQ--GGQETQEYRLYREKKTAPWITRIPQELVKKGQF------PIPSITWEHT 70
Query: 335 GEYTCYAENIRGNAS 349
G Y CY + S
Sbjct: 71 GRYRCYYGSDTAGRS 85
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 40.2 bits (94), Expect = 0.001
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 16/110 (14%)
Query: 232 YSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPT 291
Y ++ P ++ +V+ G N++++C P
Sbjct: 83 YRIGHYRFRY-----SDTLELVVTGLYGKPFLSADRGLVLMP-GENISLTCSSAHIPFDR 136
Query: 292 ILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYA 341
G+ S + E A F +L V +G Y CY
Sbjct: 137 FSLAKEGE----LSLPQHQSGEHPANF------SLGPVDLNVSGIYRCYG 176
Score = 37.9 bits (88), Expect = 0.005
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G+V + C + T L ++ L E D F I ++ A
Sbjct: 23 DGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEF----VID--HMDANKA 76
Query: 335 GEYTCYAEN 343
G Y C
Sbjct: 77 GRYQCQYRI 85
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 39.9 bits (92), Expect = 0.002
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 12/95 (12%)
Query: 267 ESMVIREAGGNVTMSCYV-----YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS 321
+ ++ G +T SC + + DPEP ILW L ++ L + +
Sbjct: 8 SAPIV-HLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDG------TQE 60
Query: 322 VSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
ITL ++ A ++ L
Sbjct: 61 SIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRA 95
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 37.7 bits (87), Expect = 0.002
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL-FEKS---VSITLFNV 329
G + S + + T W LNG+ L ++ + E E+ + L V
Sbjct: 22 DGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAV 79
Query: 330 TDLDAG-EYTCYAENIRGNAS 349
D+G ++ +A+
Sbjct: 80 KHQDSGALVGFSCPGVQDSAA 100
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 38.7 bits (90), Expect = 0.002
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGD-AL 317
P ++ S ++ G +VT+ C P T L + A
Sbjct: 99 SKPTLSALPSPLVTS-GKSVTLLCQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQAE 156
Query: 318 FEKSVSITLFNVTDLDAGEYTCY 340
F + VT + G Y C+
Sbjct: 157 F------PMSPVTSVHGGTYRCF 173
Score = 32.1 bits (73), Expect = 0.32
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G +VT+ C G E L + E + A F ++ ++T+ A
Sbjct: 19 GNSVTIWCQ--GTLEAREYRLDKEESPAPWDRQNPLEPKNKARF------SIPSMTEDYA 70
Query: 335 GEYTCYAEN 343
G Y CY +
Sbjct: 71 GRYRCYYRS 79
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 36.9 bits (85), Expect = 0.003
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 15/85 (17%)
Query: 270 VIREAGGNVTMSC-Y-VYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS------ 321
V AG VT+ C Y + + W L L+ +++
Sbjct: 7 VQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLK 66
Query: 322 -------VSITLFNVTDLDAGEYTC 339
VS+T+ N D G Y C
Sbjct: 67 GNISEGNVSLTIENTVVGDGGPYCC 91
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 38.3 bits (89), Expect = 0.003
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 12/83 (14%)
Query: 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P+++ + + GG+VT+ C G + E A F
Sbjct: 93 AKPSLSAQPGPAVSS-GGDVTLQCQ-TRYGFDQFALYKEGDPAPYKN----PERWYRASF 146
Query: 319 EKSVSITLFNVTDLDAGEYTCYA 341
+ VT +G Y CY+
Sbjct: 147 ------PIITVTAAHSGTYRCYS 163
Score = 29.4 bits (66), Expect = 2.5
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 17/69 (24%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
VT+ C G P + L E+ + ++ + + + A
Sbjct: 22 EKPVTLRCQ--GPPGVDLYRL---------------EKLSSSRYQDQAVLFIPAMKRSLA 64
Query: 335 GEYTCYAEN 343
G Y C +N
Sbjct: 65 GRYRCSYQN 73
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 36.8 bits (85), Expect = 0.003
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 270 VIREAGGNVTMSC---YVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKS----- 321
E G N + C + W + +LL +E + ++KS
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63
Query: 322 --------VSITLFNVTDLDAGEYTCYAEN 343
VS+ + NVT D G Y C +
Sbjct: 64 KGDLNKGDVSLIIKNVTLDDHGTYCCRIQF 93
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 37.3 bits (86), Expect = 0.003
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 22/114 (19%)
Query: 263 VTIKESMVIREAGGNVTMSCYVYGDPEP----TILWLLNGQ-----VLHNSSFDLLEEEE 313
V + V G VT+ C + + W + + +
Sbjct: 2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYID 61
Query: 314 GDALFE-----------KSVSITLFNVTDLDAGEYTCYAENI--RGNASGEISL 354
F+ K SI + N+ D G +TC +N + +++L
Sbjct: 62 EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 38.3 bits (90), Expect = 0.005
Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 49/179 (27%)
Query: 53 LDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKN---SG-IREVHRDTFKYLTILV 108
+ ++ N+ LT + + LNL + L G F
Sbjct: 172 FSKLFTSMTISRNR---LTGKIPPTFANLNLAFVDLSRNMLEGDASV----LFGSDKNTQ 224
Query: 109 EVDLSDNQIAWLHQDTF----LGNDR-LKVLYLNGNPITELRAGQFPKLPYLKTIELQHC 163
++ L+ N + F +G + L L L N I G P+
Sbjct: 225 KIHLAKNSL------AFDLGKVGLSKNLNGLDLRNNRIY----GTLPQ------------ 262
Query: 164 QIHSVHKDALIHLTALESLNLNGNRLK-HLSESVFFPTPNLKTLSLDGNPWCCDCHLRS 221
L L L SLN++ N L + + + N C L +
Sbjct: 263 --------GLTQLKFLHSLNVSFNNLCGEIPQGGNL--QRFDVSAYANNKCLCGSPLPA 311
Score = 36.7 bits (86), Expect = 0.018
Identities = 34/205 (16%), Positives = 60/205 (29%), Gaps = 59/205 (28%)
Query: 20 DWTDCPDTCRCKWTLGKKSALCKDANFTALPSTLDSDIQVLDLNNNKISYLTKEAFKSIG 79
W D C W G LC T + LDL+ + S+
Sbjct: 26 SWLPTTDCCNRTWL-G---VLCD-------TDTQTYRVNNLDLSGLNLP-KPYPIPSSLA 73
Query: 80 LL-NLQRIYLKN----SG-IREVHRDTFKYLTILVEVDLSDNQIAWLHQDT-----FLGN 128
L L +Y+ G I LT L + ++ + + FL
Sbjct: 74 NLPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNV------SGAIPDFLSQ 123
Query: 129 -DRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGN 187
L L + N ++ G P ++ L L + +GN
Sbjct: 124 IKTLVTLDFSYNALS----GTLP--------------------PSISSLPNLVGITFDGN 159
Query: 188 RLK-HLSESVFFPTPNLKTLSLDGN 211
R+ + +S + ++++ N
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRN 184
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 37.4 bits (86), Expect = 0.006
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 12/87 (13%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG---DPEPTILWLLNGQVLHNSSFDLLEEEEGDA 316
P V + + G +T+ C V G + T++ L + L E
Sbjct: 86 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAE---- 141
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAEN 343
V+ T+ D +++C E
Sbjct: 142 -----VTTTVLVRRDHHGAQFSCRTEL 163
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 37.6 bits (86), Expect = 0.006
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG-DPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P V E +V G + ++C + D ++ W L ++ + G +
Sbjct: 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRS-- 59
Query: 319 EKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
+T+ N + AG C + L
Sbjct: 60 ----VLTVRNASLSAAGTRVCVGSCGGRTFQHTVQL 91
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 38.1 bits (87), Expect = 0.007
Identities = 17/129 (13%), Positives = 28/129 (21%), Gaps = 12/129 (9%)
Query: 214 CCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWDDVKAQEFACPPNVTIKESMVIRE 273
C C + S + + +E P V
Sbjct: 456 CHGCLMSRDPYCGWDQGRCISIYSSERSVLQSINPAEP--HKECPNPKPDKAPLQKVSLA 513
Query: 274 AGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLD 333
+SC + T W V + + + N+T
Sbjct: 514 PNSRYYLSCPME-SRHATYSWRHKENVEQSCEPGHQSPNCI---------LFIENLTAQQ 563
Query: 334 AGEYTCYAE 342
G Y C A+
Sbjct: 564 YGHYFCEAQ 572
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 37.9 bits (88), Expect = 0.008
Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 36/176 (20%)
Query: 57 IQVLDLNNNKISYLTKEAFKSIGLL-NLQRIYLKNSGIREVHRDTFKYLTI----LVEVD 111
+Q L L ++ + ++ NL R+ L SG + L L E++
Sbjct: 120 LQNLSLEGLRL---SDPIVNTLAKNSNLVRLNL--SGCSGFSEFALQTLLSSCSRLDELN 174
Query: 112 LS------DNQIAWLHQDTFLGNDRLKVLYLNG--NPITE--LRAGQFPKLPYLKTIELQ 161
LS + + ++ + L L+G + + L + P L ++L
Sbjct: 175 LSWCFDFTEKHVQVAVAH---VSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLS 230
Query: 162 HC-QIHSVHKDALIHLTALESLNLNGNR------LKHLSESVFFPTPNLKTLSLDG 210
+ + L L+ L+L+ L L E P LKTL + G
Sbjct: 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-----PTLKTLQVFG 281
Score = 36.8 bits (85), Expect = 0.019
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 125 FLGNDRLKVLYLNGNPITELRAGQF-PKLPYLKTIELQHCQIHSVHKDALIHLTALESLN 183
R++ + L+ + I + L+ + L+ ++ + L + L LN
Sbjct: 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148
Query: 184 LNGNR------LKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRS 221
L+G L+ L S L L+L + H++
Sbjct: 149 LSGCSGFSEFALQTLLSS----CSRLDELNLSWCFDFTEKHVQV 188
Score = 32.2 bits (73), Expect = 0.43
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Query: 119 WLHQDTFLGNDRLKVLYLNGNP-ITELRAGQFPKLPYLKTIELQHCQIHSVHKDALI-HL 176
LH D V+ + + ++ ++L + I ++
Sbjct: 58 NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117
Query: 177 TALESLNLNGNRLKHLSESVFFPTPNLKTLSLDGNPWCCDCHLRS 221
+ L++L+L G RL + NL L+L G + L++
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 37.0 bits (84), Expect = 0.013
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 17/85 (20%)
Query: 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
++ G V ++C E I W L+ S
Sbjct: 5 KKDVYVVELDWYPDAPGEMVVLTCDTP--EEDGITWTLDQSSEVLGS------------- 49
Query: 319 EKSVSITLFNVTDLDAGEYTCYAEN 343
++T+ DAG+YTC+
Sbjct: 50 --GKTLTIQVKEFGDAGQYTCHKGG 72
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 34.8 bits (80), Expect = 0.016
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 30/104 (28%)
Query: 275 GGNVTMSCYVYGDPEPT-----ILWLLNGQ-----VLHNS-------------SFDLLEE 311
G +VT+ CY+ + W +G+ V H + L
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 312 EEGDALFEKSVSITLFNVTDLDAGEYTC-YAENIRGNASGEISL 354
E +A S+ +F + D G YTC + +G+ S +I L
Sbjct: 75 ELRNA------SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 34.9 bits (80), Expect = 0.018
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 7/80 (8%)
Query: 275 GGNVTMSCYVY-GDPEPTILWLLNGQVL----HNSSFDLLEEEEGD--ALFEKSVSITLF 327
G NVT++ + + W + E + L +S ++ +
Sbjct: 19 GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78
Query: 328 NVTDLDAGEYTCYAENIRGN 347
V D Y GN
Sbjct: 79 KVQKEDNSTYIMRVLKKTGN 98
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 36.0 bits (83), Expect = 0.027
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P++ +++ G V + C+ E L + + + A F
Sbjct: 119 KPSLLAHPGPLVKS-GERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANF- 176
Query: 320 KSVSITLFNVTDLDAGEYTCYAEN 343
++ + AG Y CY
Sbjct: 177 -----SIGPMMLALAGTYRCYGSV 195
Score = 34.9 bits (80), Expect = 0.071
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFE 319
P ++ S V+ GG+VT+ C+ + ++ F
Sbjct: 24 KPFLSAWPSAVVPR-GGHVTLRCHYR-HRFNNFMLYKEDRIHIPI----FHGRIFQESF- 76
Query: 320 KSVSITLFNVTDLDAGEYTCYAEN 343
+ VT AG YTC +
Sbjct: 77 -----NMSPVTTAHAGNYTCRGSH 95
>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type
(immunoglobulin-like) domain, histocompatibi antigen,
immune system; HET: 16A; 1.32A {Gallus gallus} PDB:
3p77_A*
Length = 275
Score = 36.0 bits (84), Expect = 0.028
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 27/94 (28%)
Query: 260 PPN--VTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEE-- 313
P V KE+ G +T+SC+ +G TI W+ +G V +E
Sbjct: 183 QPEVRVWGKEA------DGILTLSCHAHGFYPRPITISWMKDGMVRD-------QETRWG 229
Query: 314 -----GDALFEKSVSITLFNVTDLDAGEYTCYAE 342
D + S +I V D +Y C E
Sbjct: 230 GIVPNSDGTYHASAAID---VLPEDGDKYWCRVE 260
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 34.1 bits (78), Expect = 0.029
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 28/100 (28%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYV-----------------YGDPEPTILWLLNGQVLHN 303
P + ES V G+V + C D L G +
Sbjct: 3 PTLKTPES-VTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQ 61
Query: 304 SSF----DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339
+ + + + GD S+ + + D YTC
Sbjct: 62 AKYRGRLKVSHKVPGDV------SLQINTLQMDDRNHYTC 95
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 35.6 bits (81), Expect = 0.029
Identities = 22/159 (13%), Positives = 44/159 (27%), Gaps = 28/159 (17%)
Query: 207 SLDGNPWCCDCHLRSFRNWLLKSKLYSHPLSCTEPGMLQTKHWD-----DVKAQEFACPP 261
L G+ +C L + + K+ +++ P
Sbjct: 72 RLLGDVQKKNCSLS-IGD---ARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127
Query: 262 NVTIKESMVIREAGGNVTMSCYVY----GDPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
++ E + E+G +SC + P T W N +
Sbjct: 128 DIHFLEPL---ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPET----------- 173
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+S +TL + TC + + E ++ L
Sbjct: 174 -TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 36.0 bits (83), Expect = 0.032
Identities = 32/207 (15%), Positives = 64/207 (30%), Gaps = 19/207 (9%)
Query: 45 NFTALPSTLDSDIQVLDLNNNKISYLTK--EAFKSIGLLNLQRIYLKNSGIREVHRDTFK 102
P D ++ ++ ++ + + L+R+ + + + + + FK
Sbjct: 72 ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS-FK 130
Query: 103 YLTILV---EVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKL----PYL 155
+LV S + +A + LK L L + + ++ L
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAI----AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186
Query: 156 KTIELQHCQIHSVHKDALIHLTA----LESLNLNGNRLKHLSESVFFPTPNLKTLSLDGN 211
++ + V AL L L+SL LN ++ P L+ L G
Sbjct: 187 VSLNISCLASE-VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245
Query: 212 PWCCDCHLRSFRNWLLKSKLYSHPLSC 238
+ S + L LS
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSG 272
Score = 33.3 bits (76), Expect = 0.27
Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 33/176 (18%)
Query: 57 IQVLDLNNNKISYLTKEAFKSI--GLLNLQRIYLKNSGIREVHRDTFKYL----TILVEV 110
+VL L++ + + +I NL+ + L+ S + +V + T LV +
Sbjct: 132 FKVLVLSS--CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189
Query: 111 DLSDNQIAWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKLPYLKTIELQHCQIHSVHK 170
++S + + L+ L + P LK+++L
Sbjct: 190 NISCLA-------SEVSFSALERL--------------VTRCPNLKSLKLNRAVPLEKLA 228
Query: 171 DALIHLTALESLNLNGNRL---KHLSESVFFPTPNLKTL-SLDGNPWCCDCHLRSF 222
L LE L G + + K L L G +L +
Sbjct: 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV 284
Score = 32.9 bits (75), Expect = 0.34
Identities = 22/172 (12%), Positives = 51/172 (29%), Gaps = 24/172 (13%)
Query: 55 SDIQVLDLNNNKISYLTKEAFKSI--GLLNLQRIYLKN-------SGIREVHRDTFKYLT 105
+++ LDL + + ++ +L + + S + +
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL----VTRCP 211
Query: 106 ILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNG---NPITELRAGQFPKLPYLKTIE-LQ 161
L + L+ +L+ L G ++ +G L K + L
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271
Query: 162 HCQIHSVHKDALIHL----TALESLNLNGNRLKHLS-ESVFFPTPNLKTLSL 208
L + + L +LNL+ ++ + P L+ L +
Sbjct: 272 GFWD--AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321
Score = 29.5 bits (66), Expect = 4.0
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 19/93 (20%)
Query: 130 RLKVLYLNGNPIT-----ELRAGQFPKLPYLKTIELQHCQI-HSVHKDALIHLTALESLN 183
++++L + + + +G L+ +E++ C L + SL
Sbjct: 457 KMEMLSVAFAGDSDLGMHHVLSG----CDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512
Query: 184 LNGNR-----LKHLSESVFFPTPNLKTLSLDGN 211
++ K L + + P L +D
Sbjct: 513 MSSCSVSFGACKLLGQKM----PKLNVEVIDER 541
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 34.4 bits (78), Expect = 0.033
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 28/120 (23%)
Query: 263 VTIKESMVIREAGGNVTMSC---YVYGDPEPTILWL-----LNGQVLHNSSFDLLEEEEG 314
V + V AGG V + C P I WL + +++ E G
Sbjct: 7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 66
Query: 315 DALFEK------------------SVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL 356
+ + ++ L +V D G Y C + + + E LD
Sbjct: 67 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWC--QVAQWSIRTEFGLDA 124
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 35.3 bits (81), Expect = 0.042
Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
+G VT C + L L G+ H + A F L VT
Sbjct: 114 ISGEKVTFYCRL-DTATSMFLLLKEGRSSHVQRGY----GKVQAEF------PLGPVTTA 162
Query: 333 DAGEYTCYA 341
G Y C+
Sbjct: 163 HRGTYRCFG 171
Score = 33.0 bits (75), Expect = 0.21
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 8/69 (11%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
VT+ C G+ L L E F + ++ A
Sbjct: 21 EKQVTICCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKF------YIPDMNSRMA 72
Query: 335 GEYTCYAEN 343
G+Y+C
Sbjct: 73 GQYSCIYRV 81
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 34.8 bits (80), Expect = 0.046
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 23/78 (29%)
Query: 273 EAGGNVTMSCYV---------YGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVS 323
+G NVT+ C + + + W L+ Q+ + F ALF
Sbjct: 112 TSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQ--------ALF----- 158
Query: 324 ITLFNVTDLDAGEYTCYA 341
+ VT CY
Sbjct: 159 -PVGPVTPSHRWMLRCYG 175
Score = 31.4 bits (71), Expect = 0.60
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G +VT+ C G E L+ E + A F ++ ++T+ A
Sbjct: 19 GNSVTIRCQ--GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARF------SIPSMTEHHA 70
Query: 335 GEYTCYAEN 343
G Y CY +
Sbjct: 71 GRYRCYYYS 79
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 33.5 bits (77), Expect = 0.046
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
P V + S AG ++C+ G P+ +I + +G + + + + D
Sbjct: 24 TPKVQVY-SRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDM-SFNDDWT 81
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAE 342
F++ V T Y C E
Sbjct: 82 FQRLVHAD---FTPSSGSTYACKVE 103
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 33.3 bits (76), Expect = 0.050
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 13/79 (16%)
Query: 275 GGNVTMSCYVYGDP-----EPTILWL-LNGQVLHN--SSFDLLEEEEGD-----ALFEKS 321
+ C E + W VL+ + + + S
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS 68
Query: 322 VSITLFNVTDLDAGEYTCY 340
++ L N+ D G Y C
Sbjct: 69 WTLRLHNLQIKDKGLYQCI 87
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, immune system; HET: 16A; 1.32A
{Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B 3jvg_C*
2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 32.7 bits (75), Expect = 0.059
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
P V + S AG ++C+ G P+ +I + +G + + + + D
Sbjct: 4 TPKVQVY-SRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDM-SFNDDWT 61
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAE 342
F++ V T Y C E
Sbjct: 62 FQRLVHAD---FTPSSGSTYACKVE 83
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 35.0 bits (81), Expect = 0.061
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
P + + S E G + ++CYV G + + L NG+ + + E D
Sbjct: 7 TPKIQVY-SRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE-------KVEHSDLS 58
Query: 318 ------FEKSVSITLFNVTDLDAGEYTC 339
F T + EY C
Sbjct: 59 FSKDWSFYLLYYT---EFTPTEKDEYAC 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 35.3 bits (81), Expect = 0.063
Identities = 24/164 (14%), Positives = 44/164 (26%), Gaps = 16/164 (9%)
Query: 75 FKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQI--AWLHQDTFLGNDRLK 132
L+ + E+ L L V + L + D L+
Sbjct: 86 AAMFNLIPENWGGYVTPWVTEISN----NLRQLKSVHFRRMIVSDLDLDRLAKARADDLE 141
Query: 133 VLYLNG-NPITELRAGQF-PKLPYLKTIELQHCQIHSVHKDALIHL----TALESLNLNG 186
L L+ + T +KT+ ++ L L T+LE LN
Sbjct: 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM 201
Query: 187 NRLKHLS----ESVFFPTPNLKTLSLDGNPWCCDCHLRSFRNWL 226
+S E++ +L ++ + L
Sbjct: 202 TEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL 245
Score = 31.5 bits (71), Expect = 0.96
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 130 RLKVLYLNGNPITE--LRAGQFPKLPYLKTIELQHCQIHSVHKDAL---IHLTALESLNL 184
L+ L + G +E + A KLP L+ + +Q + +D + +E +
Sbjct: 489 NLQKLEMRGCCFSERAIAAA-VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547
Query: 185 NG 186
Sbjct: 548 RR 549
>1a6z_A HFE; HFE, hereditary hemochromatosis, MHC class I, MHC class I
complex; 2.60A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 1de4_A*
Length = 275
Score = 34.5 bits (80), Expect = 0.065
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 260 PP--NVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE-EG 314
PP VT + T+ C T+ WL + Q + F+ + G
Sbjct: 185 PPLVKVTHHVT------SSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNG 238
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCYAE 342
D ++ +++ V + YTC E
Sbjct: 239 DGTYQGWITLA---VPPGEEQRYTCQVE 263
>3bev_A Major histocompatibility complex class I glycoprotein haplotype
B21; MHC class I, chicken, BF21, 11MER, peptide, bulge,
water cushion, immune response, immunoglobulin domain,
MHC I; 2.10A {Gallus gallus} PDB: 3bew_A
Length = 274
Score = 34.5 bits (80), Expect = 0.074
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Query: 272 REAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEE-------GDALFEKSV 322
+EA G +T+SC +G + WL +G V ++ + GD + V
Sbjct: 189 KEADGILTLSCRAHGFYPRPIVVSWLKDGAVRG-------QDAQSGGIVPNGDGTYHTWV 241
Query: 323 SITLFNVTDLDAGEYTCYAE 342
+I D +Y C E
Sbjct: 242 TID---AQPGDGDKYQCRVE 258
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 32.9 bits (75), Expect = 0.078
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 261 PNVTIKESMVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVL-----HNSSFDLLEEEEG 314
P++ G NVT+ + I WL +NS+ + E E
Sbjct: 11 PDINAYT-------GSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFK 63
Query: 315 D--ALFEKSVSITLFNVTDLDAGEYTC 339
L E + ++ + NV D G Y
Sbjct: 64 GRVYLEENNGALHISNVRKEDKGTYYM 90
>2yf1_A Major histocompatibility complex class I glycoPro haplotype B21;
immune system, BF21, immune response, immunoglobulin
domain; 2.75A {Gallus gallus} PDB: 2yez_A 2yf5_A 2yf6_A
Length = 329
Score = 34.6 bits (80), Expect = 0.078
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Query: 272 REAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEE-------GDALFEKSV 322
+EA G +T+SC +G + WL +G V ++ + GD + V
Sbjct: 210 KEADGILTLSCRAHGFYPRPIVVSWLKDGAVRG-------QDAQSGGIVPNGDGTYHTWV 262
Query: 323 SITLFNVTDLDAGEYTCYAE 342
+I D +Y C E
Sbjct: 263 TID---AQPGDGDKYQCRVE 279
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 34.0 bits (78), Expect = 0.079
Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
+G VT C + L L G+ H + A F L VT
Sbjct: 111 ISGEKVTFYCRL-DTATSMFLLLKEGRSSHVQRGY----GKVQAEF------PLGPVTTA 159
Query: 333 DAGEYTCYA 341
G Y C+
Sbjct: 160 HRGTYRCFG 168
Score = 33.6 bits (77), Expect = 0.092
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 8/71 (11%)
Query: 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
VT+ C G+ L L E F + ++
Sbjct: 16 PKEKQVTICCQ--GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKF------YIPDMNSR 67
Query: 333 DAGEYTCYAEN 343
AG+Y+C
Sbjct: 68 MAGQYSCIYRV 78
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 34.7 bits (79), Expect = 0.092
Identities = 24/120 (20%), Positives = 32/120 (26%), Gaps = 10/120 (8%)
Query: 443 LGSQPDMELIEQSLAMEQPPVHITIESHAVDPQVSVFPPPPEFSSNHLPTSTYGNIFISV 502
+GS L H V P SV +F + P T +
Sbjct: 1 MGSSHHHHHHSSGLVPRGS--------HMVIPSASVTSAASDFLAALHPPVTVP--DPAP 50
Query: 503 SVSQEPPGSDPPKYPDLIDMPHRSVSVGTGPGTNPAYFATLPRRPRSKVIEPSSLVRVGP 562
P +PP + R + TGPGT A R S+ G
Sbjct: 51 PPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 33.2 bits (75), Expect = 0.095
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 244 LQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQ---- 299
L T D A + S AGG V + C V + ++ W Q
Sbjct: 22 LGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLY 81
Query: 300 -----VLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTC 339
L ++ L+ + +SI++ NV D GEYTC
Sbjct: 82 FGEKRALRDNRIQLVTSTPHE------LSISISNVALADEGEYTC 120
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 33.7 bits (77), Expect = 0.098
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
V + C+ D L + + L E D + + + SI+ +T A
Sbjct: 22 EETVILQCW--SDVMFEHFLLH--REGMFNDTLRLIGEHHDGVSKANFSIS--RMTQDLA 75
Query: 335 GEYTCYAEN 343
G Y CY
Sbjct: 76 GTYRCYGSV 84
Score = 29.9 bits (67), Expect = 1.6
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Query: 255 QEFACPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEG 314
P+++ + + G NVT+SC G L +
Sbjct: 103 IGLYEKPSLSAQPGPTVLA-GENVTLSCSSR-SSYDMYHLSREG---EAHERRLPAGPKV 157
Query: 315 DALFEKSVSITLFNVTDLDAGEYTCY 340
+ F+ + T G Y C+
Sbjct: 158 NGTFQADFPLG--PATH--GGTYRCF 179
>1mhc_A MHC class I antigen H2-M3; histocompatibility antigen/peptide,
histocompatibility antig peptide complex; HET: FME NAG;
2.10A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Length = 282
Score = 33.8 bits (78), Expect = 0.12
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 276 GNVTMSCYVYGD--PEPTILWLLNGQVLHNSSFDLLEEEE-------GDALFEKSVSITL 326
G+VT+ C+ G + T+ W + + L ++ E GD F+K ++
Sbjct: 197 GDVTLRCWALGFYPADITLTWQKDEEDLT-------QDMELVETRPSGDGTFQKWAAVV- 248
Query: 327 FNVTDLDAGEYTCYAE 342
V + YTCY
Sbjct: 249 --VPSGEEQRYTCYVH 262
>1r3h_A MHC H2-TL-T10-129; class IB MHC, gammadelta T cell ligand, immune
system; 2.50A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB:
1c16_A 1ypz_A*
Length = 260
Score = 33.8 bits (78), Expect = 0.13
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEE-------GDALFEKSVSITL 326
G+VT+ C+ G + T+ W +G+ L ++ E GD F+K ++
Sbjct: 181 GDVTLRCWALGFYPADITLTWQKDGEELT-------QDVEFVETRPAGDGTFQKWAAVV- 232
Query: 327 FNVTDLDAGEYTCYAE 342
V YTC+ +
Sbjct: 233 --VPLGKVQSYTCHVD 246
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 31.9 bits (73), Expect = 0.15
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHN-SSFDLLEEEEGDA 316
P + + S E G + ++CYV G + + L NG+ + DL D
Sbjct: 5 TPKIQVY-SRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLS--FSKDW 61
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAE 342
F T + EY C
Sbjct: 62 SFYLLYYTE---FTPTEKDEYACRVN 84
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 33.0 bits (76), Expect = 0.16
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 21/125 (16%)
Query: 107 LVEVDLSD-NQI----AWLHQDTFLGNDRLKVLYLNGNPITELRAGQFPKL----PYLKT 157
L EV+L++ I + N +K + G + A ++ LK+
Sbjct: 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKS 97
Query: 158 IELQHCQIHSVH----KDALIHLTALESLNLNGNRL-------KHLSESVFFPTPNLKTL 206
+ ++ I +AL T+L L ++ ++ + T L
Sbjct: 98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKF 156
Query: 207 SLDGN 211
Sbjct: 157 GYHFT 161
Score = 31.9 bits (73), Expect = 0.34
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 15/98 (15%)
Query: 128 NDRLKVLYLNG-NPITELRAGQFPKL----PYLKTIELQHCQIHSVHK----DALIHLTA 178
+ L+ + LN I + Y+K + + + + L
Sbjct: 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT 94
Query: 179 LESLNLNGNRL-----KHLSESVFFPTPNLKTLSLDGN 211
L+SLN+ N + L E++ T +L L +D
Sbjct: 95 LKSLNVESNFISGSGILALVEALQSNT-SLIELRIDNQ 131
Score = 29.2 bits (66), Expect = 2.6
Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 22/102 (21%)
Query: 57 IQVLDLNNNKISYLTKEAF-------KSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVE 109
++ + + + A ++ LN++ ++ SGI + + + T L+E
Sbjct: 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL-VEALQSNTSLIE 125
Query: 110 VDLSDNQ----------IAWLHQDTFLGNDRLKVLYLNGNPI 141
+ + + IA + N L +
Sbjct: 126 LRIDNQSQPLGNNVEMEIA----NMLEKNTTLLKFGYHFTQQ 163
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 32.3 bits (73), Expect = 0.18
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 320 KSVSITLFNVTDLDAGEYTC-YAENIRGNASGEISL 354
+ ++ L +T D G YTC +A +G+ G L
Sbjct: 91 QDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWL 126
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 31.8 bits (72), Expect = 0.20
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 260 PPNVTIKESMVIREAGGNVTMSC-YVYGDPEPTILWL-------LNGQVLHNSSFD---- 307
PP + E G + + C + I + + G+ + N + +
Sbjct: 14 PPEIRTLE-------GSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGR 66
Query: 308 LLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE 342
L L + + + +V DA Y C E
Sbjct: 67 LAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVE 101
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 33.6 bits (77), Expect = 0.21
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEE-------GDALFEKSVSITL 326
+VT+ C+ G + T+ W LNG+ L ++ E GD F+K ++
Sbjct: 342 VDVTLRCWALGFYPADITLTWQLNGEDLT-------QDMELVETRPAGDGTFQKWAAV-- 392
Query: 327 FNVTDLDAGEYTCYAE 342
V YTC+
Sbjct: 393 -VVPLGKEQNYTCHVH 407
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 33.7 bits (76), Expect = 0.21
Identities = 9/89 (10%), Positives = 24/89 (26%), Gaps = 16/89 (17%)
Query: 270 VIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNV 329
+ G ++T C ++ N ++H L ++V+I + N+
Sbjct: 208 KVILVGSDITFCCVSQEKVLSALIGHTNCPLIH--------------LDGENVAIKIRNI 253
Query: 330 TDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ + +
Sbjct: 254 SVSA--SSGTNVVFTTEDNIFGTVIFAGY 280
>1k5n_A Major histocompatibility complex molecule HLA-B*2; MHC(major
histocompatibility complex), HLA(human leukocyte A
immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2
d.19.1.1 PDB: 1jgd_A 1of2_A 1uxw_A 1w0w_A 3b3i_A* 3bp7_A
3czf_A* 3hcv_A* 3d18_A* 2bss_A 2bsr_A 2a83_A 1jge_A
1hsa_A 1uxs_A 1w0v_A 1ogt_A 2bst_A 3b6s_A* 3bp4_A ...
Length = 276
Score = 33.0 bits (76), Expect = 0.22
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 19/74 (25%)
Query: 275 GGNVTMSCYVYGD--PEPTILWLLNGQVLHNSSFDLLEEEE-------GDALFEKSVSIT 325
T+ C+ G E T+ W +G+ ++ E GD F+K ++
Sbjct: 196 DHEATLRCWALGFYPAEITLTWQRDGEDQT-------QDTELVETRPAGDRTFQKWAAVV 248
Query: 326 LFNVTDLDAGEYTC 339
V + YTC
Sbjct: 249 ---VPSGEEQRYTC 259
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 31.9 bits (72), Expect = 0.29
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 288 PEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGN 347
+ ++ N + + + + + E + + + D D G YT ++ G
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIE----MFMEKLQDEDEGTYTFQIQD--GK 119
Query: 348 ASGEISLDL 356
A+G +L L
Sbjct: 120 ATGHSTLVL 128
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 33.0 bits (75), Expect = 0.29
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYVYG-DPEP-TILWLLNGQVLHNSSFDLLEEEE 313
T++ + A V ++C V P+ + WL NG V + + E +
Sbjct: 216 SETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENK 275
Query: 314 GDALFEKSVSITLFNVTDLDAGEYTCYAEN 343
D + + + D + TC E+
Sbjct: 276 -DGTYNWMSWLLVNVSAHRDDVKLTCQVEH 304
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 32.5 bits (73), Expect = 0.32
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 17/110 (15%)
Query: 256 EFACPPNVTIKESMVIREAGGNVTMSCYV-------YGDPEPTILWLLNGQVLHNSSFDL 308
E P ES V++ N T C + + I+W N + + +
Sbjct: 1 ELLDPCGYISPESPVVQ-LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI 59
Query: 309 LEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDLPE 358
+ + S+T ++ L+ TC + +
Sbjct: 60 INRT--------ASSVTFTDIASLNIQ-LTCNILTFGQLEQNVYGITIIS 100
>1zs8_A Histocompatibility 2, M region locus 10.5; major histocompatibility
complex, MHC, vomeronasal organ, VN receptors, pheromone
receptors, pepti immune system; HET: NAG; 3.00A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 274
Score = 32.3 bits (74), Expect = 0.35
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEE-------GDALFEKSVSITL 326
GNVT+ C+ G + T+ W +G+ ++ E GD F+K ++
Sbjct: 196 GNVTLRCWALGFYPADITLTWKRDGKNHT-------QDMELPDTRPAGDGTFQKWAAV-- 246
Query: 327 FNVTDLDAGEYTCYAE 342
V + YTC+
Sbjct: 247 -VVPFGEELRYTCHVH 261
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 32.8 bits (75), Expect = 0.36
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 276 GNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEE-------GDALFEKSVSITL 326
VT+ C+ G + T+ W LNG+ L ++ E GD F+K S+
Sbjct: 339 DKVTLRCWALGFYPADITLTWQLNGEELI-------QDMELVETRPAGDGTFQKWASV-- 389
Query: 327 FNVTDLDAGEYTCYAE 342
V YTC+
Sbjct: 390 -VVPLGKEQYYTCHVY 404
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 31.6 bits (72), Expect = 0.36
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEEEGDAL 317
PP VT+ E G T+ C++ P + WL NG+++ + L D
Sbjct: 86 PPEVTVF-PKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYS 144
Query: 318 FEKSVSITLFNVTDLDAGEYTCYAE 342
F K +T Y C E
Sbjct: 145 FHKFHYLT---FVPSAEDFYDCRVE 166
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 31.9 bits (72), Expect = 0.44
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
V + C+ D L + L E D + + + SI + A
Sbjct: 21 EETVILQCW--SDVRFQHFLLH--REGKFKDTLHLIGEHHDGVSKANFSIG--PMMQDLA 74
Query: 335 GEYTCYAEN 343
G Y CY
Sbjct: 75 GTYRCYGSV 83
Score = 29.6 bits (66), Expect = 2.9
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 9/83 (10%)
Query: 259 CPPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALF 318
P+++ + + G +VT+SC G + + F
Sbjct: 106 EKPSLSAQPGPTVLA-GESVTLSCSSR-SSYDMYHLSREG---EAHERRFSAGPKVNGTF 160
Query: 319 EKSVSITLFNVTDLDAGEYTCYA 341
+ + T G Y C+
Sbjct: 161 QADFPLG--PATH--GGTYRCFG 179
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 30.7 bits (69), Expect = 0.45
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 268 SMVIREAGGNVTMSC-YVYGDPEPTILW---LLNG--QVLHNSSFDLLEEEEG-----DA 316
+ V G++T+ C Y G W + ++L +S E + D
Sbjct: 10 TTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDN 69
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISLDL---PEINLATTLSKT 368
++ ++T+ ++ DA Y C E + + + + P T+ S T
Sbjct: 70 QKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEETSSSPT 124
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 30.4 bits (69), Expect = 0.49
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHN-SSFDLLEEEEGDA 316
P + + S E G + ++CYV G + + L NG+ + DL D
Sbjct: 24 TPKIQVY-SRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLS--FSKDW 80
Query: 317 LFEKSVSITLFNVTDLDAGEYTC 339
F T + EY C
Sbjct: 81 SFYLLYYTE---FTPTEKDEYAC 100
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 30.0 bits (68), Expect = 0.58
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHN-SSFDLLEEEEGDA 316
P + + S E G ++CYV P I L NG+ + D+ D
Sbjct: 4 TPQIQVY-SRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMS--FSKDW 60
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAE 342
F T + Y C +
Sbjct: 61 SFYILAHTE---FTPTETDTYACRVK 83
>3d2u_A UL18 protein; MHC class I homolog, disease mutation, glycation,
glycoprote immune response, immunoglobulin domain, MHC
I, pyrrolidone carboxylic acid; HET: NAG MAN BMA FUC;
2.21A {Human herpesvirus 5}
Length = 281
Score = 31.6 bits (72), Expect = 0.71
Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 270 VIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHNSSFDLLEEE--EGDALFEKSVSIT 325
V + C YG E I ++ G + S D F + +
Sbjct: 197 VRNQNDNRAEAFCTSYGFFPGEIQITFIHYGDKVPEDSEPQCNPLLPTLDGTFHQGCYVA 256
Query: 326 LFNVTDLDAGEYTC 339
+ YTC
Sbjct: 257 ---IFSNQ--NYTC 265
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 30.1 bits (68), Expect = 0.78
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 260 PPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVLHN-SSFDLLEEEEGDA 316
P + + S E G ++CYV P I L NG+ + D+ D
Sbjct: 24 TPQIQVY-SRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMS--FSKDW 80
Query: 317 LFEKSVSITLFNVTDLDAGEYTC 339
F T + Y C
Sbjct: 81 SFYILAHTE---FTPTETDTYAC 100
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 29.2 bits (65), Expect = 0.89
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G +V ++C + D + + W NGQ L L ++ F+ + D+
Sbjct: 14 GTSVELTCPL--DSDENLKWEKNGQELPQKHDKHLVLQD-------------FSEVE-DS 57
Query: 335 GEYTCYAEN 343
G Y CY
Sbjct: 58 GYYVCYTPA 66
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 29.3 bits (66), Expect = 1.2
Identities = 14/81 (17%), Positives = 22/81 (27%), Gaps = 13/81 (16%)
Query: 273 EAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDL 332
G VT+ C+ + L L ++E+ S
Sbjct: 17 SLGDTVTLRCH--LPRMAAWVQLWLNGTLR------FDKEKDKEQDAAEFSFA--VTNLE 66
Query: 333 DAGEYTCYAENIRGNASGEIS 353
DAG Y C + + S
Sbjct: 67 DAGTYQCRY---QVSEPLWTS 84
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 30.2 bits (68), Expect = 1.5
Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
Query: 244 LQTKHWDDVKAQEFACPPNVTIKESMVIREAGGNVTMSCYVYG--DPEPTILWLLNGQVL 301
L P T+ G T+ C+V P I WL N + +
Sbjct: 104 LGVLTKRSNSTPATNEAPQATVF-PKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSV 162
Query: 302 HNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAE 342
+ ++ D F K +T D Y C E
Sbjct: 163 ADGVYETSFFVNRDYSFHKLSYLT---FIPSDDDIYDCKVE 200
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 28.5 bits (64), Expect = 2.1
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 275 GGNVTMSCYVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDA 334
G +VT C G L S+++ E+ + E + +V++ +A
Sbjct: 23 GSHVTFVCR--GPVGVQTFRLERES---RSTYNDTEDVSQASPSESEARFRIDSVSEGNA 77
Query: 335 GEYTCY 340
G Y C
Sbjct: 78 GPYRCI 83
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 28.7 bits (64), Expect = 2.1
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 275 GGNVTMSCYVYGDPEP------TILWLLNG-----QVLHNSSFDLLEEE-------EGDA 316
G + + C + T +W + V+H+ L+++ G+
Sbjct: 15 GSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGN- 73
Query: 317 LFEKSVSITLFNVTDLDAGEYTCYAENIRGN 347
+ K ++ L ++ D+G Y E N
Sbjct: 74 MDHKVCNLLLKDLKPEDSGTYNFRFEISDSN 104
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB:
1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 29.9 bits (67), Expect = 2.2
Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 24/145 (16%)
Query: 441 EALGSQPDMELI-----EQSLAMEQPPVHI-TIESHAVDPQVSVFPPPPEFSSNHLPTST 494
+ + QPDM+L+ +L + P + ++ HA D V S+ +P
Sbjct: 20 KLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMG---SATDIPEQA 76
Query: 495 --YGNIFISVSVSQEPPGSDPPKYPDLID---MPHRSVSVGTGPGTNPAYFATLPRRPRS 549
+ +V D P++ +++ +V++ G +P F+ R +
Sbjct: 77 PKFAQFACTVDTY--DNHRDIPRHRQVMNEAATAAGNVAL-VSTGWDPGMFSIN--RVYA 131
Query: 550 KVIEPSSLVRVGPKYDNMGPRVTAG 574
+ ++ GP ++ G
Sbjct: 132 AAVLA-----EHQQHTFWGPGLSQG 151
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase
inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB:
1f34_B*
Length = 149
Score = 29.1 bits (64), Expect = 2.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 580 SLPDATSTEDIPSPPPPPTLCT 601
+P SPPPPP+ CT
Sbjct: 126 GMPHGAVPAGGLSPPPPPSFCT 147
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 29.6 bits (66), Expect = 2.3
Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 21/101 (20%)
Query: 273 EAGGNVTMSCYVYGDPEP-----TILWLLNGQVLHNSSFDLLEEEEG------------- 314
NVT+ C ++ I W + L + E G
Sbjct: 16 PLNDNVTIFCNIFYSQPLNITSMGITWFW--KSLTFDKEVKVFEFFGDHQEAFRPGAIVS 73
Query: 315 -DALFEKSVSITLFNVTDLDAGEYTCYAENIRGNASGEISL 354
L S+ L + +AGEY C A G + L
Sbjct: 74 PWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQL 114
>1abr_A Abrin-A; glycosidase/carbohydrate complex, lectin, lectin
(agglutinin), glycoprotein, plant SEED protein, plant
toxin; HET: NDG NGZ MAN BMA BGC; 2.14A {Abrus
precatorius} SCOP: d.165.1.1
Length = 251
Score = 29.6 bits (66), Expect = 2.8
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 327 FNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVL 376
F+ + Y + E +R G + D+P + TTL + + + + L
Sbjct: 7 FSTEGATSQSYKQFIEALRERLRGGLIHDIPVLPDPTTLQERNRYITVEL 56
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 29.9 bits (67), Expect = 3.0
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 275 GGNVTMSCYVYG----DPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVT 330
+ ++C V DP+ I W +N +H + E+ ++ ++ + +
Sbjct: 255 SLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQT-QTHREDYNSTLRVVSALPIQHQD 313
Query: 331 DLDAGEYTCYAEN 343
+ E+ C N
Sbjct: 314 WMSGKEFKCKVNN 326
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.0 bits (62), Expect = 3.5
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 265 IKES---MVIREAGGNVTMSCYVYGDPEPT-ILWLLNGQVL--------HNSSFDLLEEE 312
+K+S V G +VT + + I W V +
Sbjct: 1 MKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRN 60
Query: 313 EGD--ALFEKSVSITLFNVTDLDAGEYTCY 340
+ + ++ + ++ DAG+Y
Sbjct: 61 YYERIHALGPNYNLVISDLRMEDAGDYKAD 90
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 27.9 bits (62), Expect = 3.6
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 15/92 (16%)
Query: 268 SMVIREAGGNVTMSC-YVYGDPEPTILWLLNGQVLHNSSFDLLEEEEGDALFEKSVSIT- 325
++ G ++ + C Y D + +W + L L+ +
Sbjct: 5 EVLQAPVGSSILVQCHYRLQDVKAQKVWC---RFLPEGCQPLVSSAVDRRAPAGRRTFLT 61
Query: 326 -----LFNVT--DL---DAGEYTCYAENIRGN 347
L V L DAGEY C + RG
Sbjct: 62 DLGGGLLQVEMVTLQEEDAGEYGCMVDGARGP 93
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 29.0 bits (65), Expect = 3.6
Identities = 12/98 (12%), Positives = 33/98 (33%), Gaps = 15/98 (15%)
Query: 50 PSTLDSDIQVLDLNNNKISYLTKEAFKSIGLLNLQRIYLKNSGIREVHRDTFKYLTILVE 109
+ ++S I L ++ + + K + ++ + + + +
Sbjct: 26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLI-----------EAACNSKHIEK 74
Query: 110 VDLSDNQI----AWLHQDTFLGNDRLKVLYLNGNPITE 143
L++ I A + + L+VL + N +T
Sbjct: 75 FSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112
Score = 28.3 bits (63), Expect = 5.7
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 29/107 (27%)
Query: 83 LQRIYLKNSGIREVHRDTFKYLTILVEVDLSDNQIAWLHQDTFLGNDRLKVLYLNGNPIT 142
+ R+ ++ ++EV+ + K +S +I L + + ++ L I+
Sbjct: 33 INRLREDDTDLKEVNINNMK--------RVSKERIRSL-IEAACNSKHIEKFSLANTAIS 83
Query: 143 ELRAGQFPKLPYLKTIELQHCQIHSVHKDALIHLTALESLNLNGNRL 189
+ A + + +L LN+ N L
Sbjct: 84 DSEARGL--------------------IELIETSPSLRVLNVESNFL 110
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 29.5 bits (67), Expect = 3.9
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 13/68 (19%)
Query: 460 QPPVHITIESHAVDPQVSVFPPPPEFSSNHL----PTSTYGNIFISVSVSQEPPGSDPPK 515
+ P + DP + PP+ SS PTS Q D
Sbjct: 497 EAPDADELPRAEFDPGQDTYQHPPKDSSGQRVAVSPTSQR---------LQLLEPFDKWD 547
Query: 516 YPDLIDMP 523
DL D+
Sbjct: 548 GKDLEDLQ 555
>2yij_A Phospholipase A1-iigamma; hydrolase; 2.00A {Arabidopsis thaliana}
Length = 419
Score = 28.9 bits (64), Expect = 4.7
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 6/91 (6%)
Query: 190 KHLSESVFFPTPNLKTLSLDGNPWCC---DCHLRSFRNWLLKSKLYSHPLSCTEPGMLQT 246
+ + T + GN + +L +K L L
Sbjct: 313 SEVGDEFPIDTRKSPYMKSPGNLATFHCLEGYLHGVAGTQGTNKADLFRLDVERAIGLVN 372
Query: 247 KHWDDVKAQEFACPPN--VTIKESMVIREAG 275
K D +K E P V + M ++ G
Sbjct: 373 KSVDGLK-DECMVPGKWRVLKNKGMAQQDDG 402
>2zr1_A Agglutinin-1 chain A; ribosome-inactivating protein, immunotoxin,
agglutinin abrin glycoprotein, hydrolase, lectin, plant
defense; HET: NDG NAG; 2.60A {Abrus precatorius} PDB:
2q3n_A*
Length = 258
Score = 28.5 bits (63), Expect = 5.8
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 327 FNVTDLDAGEYTCYAENIRGNASGEISLDLPEINLATTLSKTDSWYMLVL 376
F Y + + +R +G + +P + +T+ K + + + L
Sbjct: 6 FTTGSATPASYNQFIDALRERLTGGLIYGIPVLRDPSTVEKPNQYVTVEL 55
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 28.6 bits (64), Expect = 6.8
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 14/46 (30%)
Query: 297 NGQVLHNSSFDLLEEEEGDALFEKSVSITLFNVTDLDAG-EYTCYA 341
N +LH + FD + + +DAG + YA
Sbjct: 221 NCAILHYTHFDRVAPATHRSFL-------------IDAGANFNGYA 253
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 28.3 bits (62), Expect = 6.8
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 250 DDVKAQEFAC---PPNVTIKESMVIREAGGNVTMSCYVYGDPEPTILWLLNGQVLHNSSF 306
D+VK C P + I+ V AG T C G L G + ++
Sbjct: 153 DEVKVLGHPCTRTPHFLRIQNVEV--NAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL 210
Query: 307 DLLEEEEGDALFEKSVSITLFNVTDLDAGEYTCYAENIRG 346
++ S + N T DAG+Y C G
Sbjct: 211 KEIKVTSSRRFI---ASFNVVNTTKRDAGKYRCMIRTEGG 247
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 27.1 bits (60), Expect = 7.5
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 12/83 (14%)
Query: 268 SMVIREAGGNVTMSC-YVYGDPEPTILW-----LLNGQVLHNSSFDLLEEEEG-----DA 316
V GG++++ C Y W + + + + G D+
Sbjct: 4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIV-ETKGSAGKRNGRVSIRDS 62
Query: 317 LFEKSVSITLFNVTDLDAGEYTC 339
S ++TL N+T+ DAG Y C
Sbjct: 63 PANLSFTVTLENLTEEDAGTYWC 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.412
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,398,297
Number of extensions: 564232
Number of successful extensions: 4882
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2086
Number of HSP's successfully gapped: 773
Length of query: 610
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 511
Effective length of database: 3,937,614
Effective search space: 2012120754
Effective search space used: 2012120754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)