BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10488
(462 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3
Length = 3578
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/234 (84%), Positives = 217/234 (92%)
Query: 7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
+DGPRPAQKDILAIRAYILLFLKQL+M+G GVKEDELQSILNYLTT+ EDENLHDVLQ L
Sbjct: 636 LDGPRPAQKDILAIRAYILLFLKQLIMIGNGVKEDELQSILNYLTTMHEDENLHDVLQML 695
Query: 67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
ISLM +HP+ +VPAFD+K GVR++FKLL ++SQLIRLQALKLLGFFLSRSTHKRKYDVMS
Sbjct: 696 ISLMSEHPSSMVPAFDVKHGVRSIFKLLAAESQLIRLQALKLLGFFLSRSTHKRKYDVMS 755
Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
PHNLYTLLAERLL +E SLS TYNVLYEI+TEHISQQILYTRHPEPESHYRLENPMILK
Sbjct: 756 PHNLYTLLAERLLLYEESLSLPTYNVLYEIMTEHISQQILYTRHPEPESHYRLENPMILK 815
Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVA 240
VVATLIRQSKQ+E L++VKKLFL D+TLLCN+NRENRRTVLQMSVWQ I +A
Sbjct: 816 VVATLIRQSKQTESLIDVKKLFLQDMTLLCNSNRENRRTVLQMSVWQEWLIAMA 869
Score = 261 bits (667), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 132/168 (78%), Positives = 143/168 (85%), Gaps = 4/168 (2%)
Query: 233 QGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNC 292
QGMP+EVAVSFLQRLVNMADVL+FA+SLNF ELEAEKNMSSGGILRQCLRLVCTCAVRNC
Sbjct: 1734 QGMPLEVAVSFLQRLVNMADVLIFATSLNFGELEAEKNMSSGGILRQCLRLVCTCAVRNC 1793
Query: 293 LECKERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKLL 352
LECKER R + + A + P AHLQ+LIRGAQ SPKN + T SPVKD KLL
Sbjct: 1794 LECKERTRYNVGALARDVPGA-AHLQALIRGAQASPKN---IVESITGQLSPVKDPEKLL 1849
Query: 353 QDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPP 400
QDMDVNRLRA IYRD+EE+KQAQFLSLA+VYFISVLMVSKYRDILEPP
Sbjct: 1850 QDMDVNRLRAVIYRDVEETKQAQFLSLAIVYFISVLMVSKYRDILEPP 1897
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
Length = 2946
Score = 274 bits (701), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 131/227 (57%), Positives = 183/227 (80%)
Query: 7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
+DGPRP+QK+I+++RA++LLFLKQL++ GVKEDELQSILNYL T+ EDEN+HDVLQ L
Sbjct: 667 LDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLL 726
Query: 67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
++LM +HPA ++PAFD + G+R ++KLL S+S+ I +QALK+LG+FL HKRK ++M
Sbjct: 727 VALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMH 786
Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
H+L+TLL ERL+ H ++++ TYN LYEILTE + Q+++ HPEP+S +++NPMILK
Sbjct: 787 THSLFTLLGERLMLHTNTVTVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILK 846
Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
VVATL++ S S L+EV++LFLSD+ L +N+RENRR +LQ SVWQ
Sbjct: 847 VVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCSVWQ 893
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/182 (58%), Positives = 132/182 (72%), Gaps = 5/182 (2%)
Query: 229 MSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCA 288
+ V QGM E AV+FL RL+ M DVLVFASSLNF+E+EAEKNMSSGG++RQCLRLVC A
Sbjct: 1420 IEVTQGMSAETAVTFLSRLMAMVDVLVFASSLNFSEIEAEKNMSSGGLMRQCLRLVCCVA 1479
Query: 289 VRNCLECKERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDL 348
VRNCLEC++R R N ++ + QS+ A + N VPG + SP+KD
Sbjct: 1480 VRNCLECRQRQRDRGNKSSHGSSKPQEVPQSVTATAASKTPLEN-VPG----NLSPIKDP 1534
Query: 349 HKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALS 408
+LLQD+D+NRLRA ++RD+++SKQAQFL+LAVVYFISVLMVSKYRDILEP R S
Sbjct: 1535 DRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETTRTGS 1594
Query: 409 PP 410
P
Sbjct: 1595 QP 1596
>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1
Length = 2936
Score = 274 bits (701), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 131/227 (57%), Positives = 183/227 (80%)
Query: 7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
+DGPRP+QK+I+++RA++LLFLKQL++ GVKEDELQSILNYL T+ EDEN+HDVLQ L
Sbjct: 657 LDGPRPSQKEIISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDENIHDVLQLL 716
Query: 67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
++LM +HPA ++PAFD + G+R ++KLL S+S+ I +QALK+LG+FL HKRK ++M
Sbjct: 717 VALMSEHPASMIPAFDQRNGIRVIYKLLASKSESIWVQALKVLGYFLKHLGHKRKVEIMH 776
Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
H+L+TLL ERL+ H ++++ TYN LYEILTE + Q+++ HPEP+S +++NPMILK
Sbjct: 777 THSLFTLLGERLMLHTNTVTVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILK 836
Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
VVATL++ S S L+EV++LFLSD+ L +N+RENRR +LQ SVWQ
Sbjct: 837 VVATLLKNSTPSAELMEVRRLFLSDMIKLFSNSRENRRCLLQCSVWQ 883
Score = 202 bits (514), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/184 (58%), Positives = 134/184 (72%), Gaps = 9/184 (4%)
Query: 229 MSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCA 288
+ V QGM E AV+FL RL+ M DVLVFASSLNF+E+EAEKNMSSGG++RQCLRLVC A
Sbjct: 1410 IEVTQGMSAETAVTFLSRLMAMVDVLVFASSLNFSEIEAEKNMSSGGLMRQCLRLVCCVA 1469
Query: 289 VRNCLECKERH--RALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVK 346
VRNCLEC++R R +S + P + H + ++T +N VPG + SP+K
Sbjct: 1470 VRNCLECRQRQRDRGSKSSHGSSKPQEAPHSVTAASASKTPLEN---VPG----NLSPIK 1522
Query: 347 DLHKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRA 406
D +LLQD+D+NRLRA ++RD+++SKQAQFL+LAVVYFISVLMVSKYRDILEP R
Sbjct: 1523 DPDRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETART 1582
Query: 407 LSPP 410
S P
Sbjct: 1583 GSQP 1586
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo
sapiens GN=LRBA PE=1 SV=4
Length = 2863
Score = 265 bits (677), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 123/227 (54%), Positives = 176/227 (77%)
Query: 7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
+DGPRP QK++L++RA++L+F+KQL+M GVKEDELQ+ILNYL T+ ED+NL DVLQ L
Sbjct: 641 LDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLL 700
Query: 67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
++LM +HP ++PAFD + G+R ++KLL S+S+ IR+QALK +G+FL KRK +VM
Sbjct: 701 VALMSEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKAMGYFLKHLAPKRKAEVML 760
Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
H L++LLAERL+ + ++ TYNVL+EIL E I Q+++ +HP+P+S +++NP ILK
Sbjct: 761 GHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQIGTQVIHKQHPDPDSSVKIQNPQILK 820
Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
V+ATL+R S Q +EV++ FLSD+ L NN+RENRR++LQ SVWQ
Sbjct: 821 VIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQ 867
Score = 202 bits (514), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 101/167 (60%), Positives = 127/167 (76%), Gaps = 8/167 (4%)
Query: 233 QGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNC 292
QG+ IE +V+FLQRL+++ DVL+FASSL F E+EAEK+MSSGGILRQCLRLVC AVRNC
Sbjct: 1396 QGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKSMSSGGILRQCLRLVCAVAVRNC 1455
Query: 293 LECKERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKLL 352
LEC++ + P + SLI +++ K+ D+ G SPV+DL +LL
Sbjct: 1456 LECQQHSQLKTRGDKALKP-----MHSLIPLGKSAAKSPVDIVTGGI---SPVRDLDRLL 1507
Query: 353 QDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEP 399
QDMD+NRLRA ++RD+E+SKQAQFL+LAVVYFISVLMVSKYRDILEP
Sbjct: 1508 QDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEP 1554
>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus
musculus GN=Lrba PE=1 SV=1
Length = 2856
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 124/227 (54%), Positives = 175/227 (77%)
Query: 7 VDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTL 66
+DGPRP QK+IL++RA++L+F+KQL+M GVKEDELQ+ILNYL T+ ED+NL DVLQ L
Sbjct: 641 LDGPRPNQKEILSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLL 700
Query: 67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
++LM +HP ++PAFD + G+R ++KLL S+S+ IR+QALK LG+FL KRK +VM
Sbjct: 701 VALMAEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKALGYFLKHLAPKRKAEVML 760
Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
H L++LLAERL+ + ++ YNVL+EIL E I Q+++ +HP+P+S +++NP ILK
Sbjct: 761 GHGLFSLLAERLMLQTNLITMTMYNVLFEILIEQICTQVIHKQHPDPDSTVKIQNPQILK 820
Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233
V+ATL+R S Q +EV++ FLSD+ L NN+RENRR++LQ SVWQ
Sbjct: 821 VIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQ 867
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/168 (58%), Positives = 123/168 (73%), Gaps = 7/168 (4%)
Query: 233 QGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNC 292
QG+ IE +V+FLQRL+++ DVL+FASSL F E+EAEKNMSSGGILRQCLRLVC AVRNC
Sbjct: 1393 QGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKNMSSGGILRQCLRLVCAVAVRNC 1452
Query: 293 LECKERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKL- 351
LEC++ H L +K H SLI +++ K+ D+ G SS V+DL +L
Sbjct: 1453 LECQQ-HSQLKARGDTAKSSKTIH--SLIPMGKSAAKSPVDIVTGGISS---VRDLDRLP 1506
Query: 352 LQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEP 399
+ + LRA ++RD+E+SKQAQFL+LAVVYFISVLMVSKYRDILEP
Sbjct: 1507 ARTWTLIGLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEP 1554
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2
PE=2 SV=3
Length = 2507
Score = 215 bits (548), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 159/237 (67%), Gaps = 6/237 (2%)
Query: 13 AQKDILAIRAYILLFLKQLMMLGPG------VKEDELQSILNYLTTVQEDENLHDVLQTL 66
A DI+AIR+ IL F+ ++++ G V++ E+ ++LN L TV+ED+NL+DVL +
Sbjct: 744 ATADIVAIRSSILTFINRIIIASAGPEEEERVRDQEVHTLLNLLATVREDDNLYDVLALV 803
Query: 67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
L+ +HPA ++PA D + + +F LL + ++LIR+ ALK+LGFFLSRST KRK + M
Sbjct: 804 TRLLAEHPAIMIPAIDKNKALGIIFNLLAAPNELIRIPALKILGFFLSRSTLKRKTESMG 863
Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
NL++L+ ERLL H+ LS TYNVL EIL E ++ Y H + ++ ENP +LK
Sbjct: 864 NQNLFSLIGERLLSHKKVLSLPTYNVLLEILVEQMTPTFTYACHQPAQPEWKFENPHLLK 923
Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSF 243
V+A +I Q ++SE ++++KK FL D+ LC ++ENRRT+LQMSVWQ I +A F
Sbjct: 924 VIAHVISQCEESENIVQIKKCFLIDIINLCRESKENRRTILQMSVWQDWLIGLAYVF 980
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 107/173 (61%), Gaps = 22/173 (12%)
Query: 233 QGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNC 292
Q +PI V+ FL R + D V AS ++F+ELE EKNM +GG+LRQ LR+ T VR+
Sbjct: 1152 QQLPISVSAGFLMRFARLVDTFVLASGVSFSELEQEKNMPAGGVLRQSLRISATVTVRHI 1211
Query: 293 LECKERHRALLNSPAY--NNPTKNAHLQSLIRGA--QTSPKNANDVPGGPTSSSSPVKDL 348
L + + ++P Y N+ KN + +R A + SP ++++
Sbjct: 1212 LASRIQQP---DTPRYETNSTKKNQCIMEFVREALEKRSPDG--------------LENV 1254
Query: 349 HKLLQDMDVNRLRAAIYRDM-EESKQAQFLSLAVVYFISVLMVSKYRDILEPP 400
+L+QD D+ R++ +YRDM EE++QAQFL+L+V+Y +SVLMVS+YRDILEPP
Sbjct: 1255 ERLVQDSDITRIKGVVYRDMVEENRQAQFLALSVIYLVSVLMVSRYRDILEPP 1307
>sp|Q9DDD5|NBEA_CHICK Neurobeachin (Fragment) OS=Gallus gallus GN=NBEA PE=2 SV=1
Length = 793
Score = 211 bits (537), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 107/180 (59%), Positives = 132/180 (73%), Gaps = 5/180 (2%)
Query: 229 MSVWQGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCA 288
+ V QGM E AV+FL RL+ M DVLVFASSLNF+E+EAEKNMSSGG++RQCLRLVC A
Sbjct: 518 IEVTQGMSAETAVTFLSRLMAMVDVLVFASSLNFSEIEAEKNMSSGGLMRQCLRLVCCVA 577
Query: 289 VRNCLECKERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDL 348
VRNCLEC++R R +N + + LQ + A T N VPG + SP+KD
Sbjct: 578 VRNCLECRQRQRERVNKTSLISSKAQDALQGVTASAATKTPLEN-VPG----NLSPIKDP 632
Query: 349 HKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALS 408
+LLQD+D+NRLRA ++RD+++SKQAQFL+LAVVYFISVLMVSKYRDILEP R+ S
Sbjct: 633 DRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETARSGS 692
>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2
PE=3 SV=1
Length = 2531
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 158/237 (66%), Gaps = 6/237 (2%)
Query: 13 AQKDILAIRAYILLFLKQLMMLGPG------VKEDELQSILNYLTTVQEDENLHDVLQTL 66
A +I++IR+ IL F+ ++++ ++ E+ ++LN L TV+ED+NL+DVL +
Sbjct: 751 ATAEIVSIRSAILTFINRIIISSNSPDEEEKARDQEIHTLLNLLATVREDDNLYDVLALV 810
Query: 67 ISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
L+ +HPA ++PA D + + +F LL + ++LIR+ ALK+LGFFLSRST KRK + M
Sbjct: 811 TRLLAEHPAIMIPAIDKNKALGIIFNLLAAPNELIRIPALKILGFFLSRSTLKRKTESMG 870
Query: 127 PHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILK 186
NL++L+ ERLL H+ ++S TYNVL E+L E ++ Y H + ++ ENP +LK
Sbjct: 871 SQNLFSLIGERLLSHKRTISLPTYNVLLEVLVEQMTPTFTYAAHQPAQPDWKFENPHLLK 930
Query: 187 VVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSF 243
V+A +I Q +++E L+++KK FL D+ LC ++ENRRT+LQMSVWQ I +A F
Sbjct: 931 VIAHVISQCEETESLVQIKKCFLIDIINLCRESKENRRTILQMSVWQDWLIGLAYVF 987
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 108/171 (63%), Gaps = 18/171 (10%)
Query: 233 QGMPIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNC 292
Q +PI VA SFL R + D V AS ++F+ELE EKNM +GG+LRQ LR+ T VR+
Sbjct: 1158 QQLPISVAASFLMRFAKLVDTFVLASGVSFSELEQEKNMPAGGVLRQSLRISATVTVRHI 1217
Query: 293 LECKERHRALLNSPAY--NNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHK 350
L + + ++P Y N+ KN + ++ A N P G ++++ +
Sbjct: 1218 LASRIQQP---DTPRYETNSAKKNQCIMDFVKEAL-----ENFSPEG-------LENVER 1262
Query: 351 LLQDMDVNRLRAAIYRDM-EESKQAQFLSLAVVYFISVLMVSKYRDILEPP 400
L+QD D+ R++ +YRDM EE++QAQFL+L+V+Y +SVLMVS+YRDILEPP
Sbjct: 1263 LVQDSDITRIKGVVYRDMVEENRQAQFLALSVIYLVSVLMVSRYRDILEPP 1313
>sp|Q9P107|GMIP_HUMAN GEM-interacting protein OS=Homo sapiens GN=GMIP PE=1 SV=2
Length = 970
Score = 39.3 bits (90), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 120/317 (37%), Gaps = 65/317 (20%)
Query: 178 RLENPMILKVV-ATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMP 236
RL P + A ++ ++ E L K L L +LC + R RT L
Sbjct: 498 RLRGPAKCRECEAFMVSGTECEECFLTCHKRCLETLLILCGHRRLPARTPL--------- 548
Query: 237 IEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLECK 296
V FLQ + + + F + AE+E + + GI R V VR C+
Sbjct: 549 --FGVDFLQLPRDFPEEVPFVVTKCTAEIE-HRALDVQGIYR-----VSGSRVRVERLCQ 600
Query: 297 --ERHRALL----NSP------------AYNNPTKNAHL-QSLIRGAQTSPKNANDVPGG 337
E RAL+ NSP P HL + I A+T + D PG
Sbjct: 601 AFENGRALVELSGNSPHDVSSVLKRFLQELTEPVIPFHLYDAFISLAKTLHADPGDDPGT 660
Query: 338 PTSSSSPVKDLHKLL---QDMDVNRLRAAIY-------RDMEESKQAQFLSLAVVYFISV 387
P+ S ++ L LL D + N LR + R ME A +L +V+ ++
Sbjct: 661 PSPSPEVIRSLKTLLVQLPDSNYNTLRHLVAHLFRVAARFMENKMSAN--NLGIVFGPTL 718
Query: 388 LMVSKYRDILEPPPMLPRALSP-PLTQNNNQGHEGKWVYFI-----SVLMVSKYRDILEP 441
L PP PRA S P+T + GH+ + V F+ + + + EP
Sbjct: 719 LR----------PPDGPRAASAIPVTCLLDSGHQAQLVEFLIVHYEQIFGMDELPQATEP 768
Query: 442 PPMLPRALSPPLTQNNN 458
PP PLT ++
Sbjct: 769 PPQDSSPAPGPLTTSSQ 785
>sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3
Length = 2694
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 16 DILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPA 75
DI IR + +K L G +E+QSI+ Y+ E+E L +L L SL+ P
Sbjct: 1066 DIRTIRTSLYGLIK--YFLCKGGSHEEIQSIMGYIAATNEEEQLFGILDVLFSLLRTSPT 1123
>sp|Q14CN2|CLCA4_HUMAN Calcium-activated chloride channel regulator 4 OS=Homo sapiens
GN=CLCA4 PE=1 SV=2
Length = 919
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 392 KYRDILEPPPMLPRALSPPLTQNNNQGHEGKWVYFISVLMVSKYRDILEPPPML 445
K+ D++ PP LP P Q G +G++++F L++ K ++ PP L
Sbjct: 99 KHADVIVAPPTLPGRDEPYTKQFTECGEKGEYIHFTPDLLLGKKQNEYGPPGKL 152
>sp|P35537|FLIR_BACSU Flagellar biosynthetic protein FliR OS=Bacillus subtilis (strain
168) GN=fliR PE=3 SV=2
Length = 259
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 204 VKKLFLSDLTLLCNNNRENRRTVLQMSVWQ-GMPIEVAVSFLQRLVNMADVLVFASSLNF 262
V LFL DL L RTV Q++V+ G+P+++AVSF+ +V M+ + V ++
Sbjct: 189 VASLFLVDLAL-----GIVARTVPQLNVFVVGLPLKIAVSFIMLIVCMSVIFVVVRNVFS 243
Query: 263 AELEAEKNM 271
+E +N+
Sbjct: 244 LTIETMRNL 252
>sp|Q96JB1|DYH8_HUMAN Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2
Length = 4490
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 35/225 (15%)
Query: 199 ELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVNMADVL---- 254
E L+ V FLSD ++C++ + R+ V M ++ M E S+ QR A V
Sbjct: 2984 EALIAVASYFLSDYNIVCSSEIK-RQVVETMGLFHDMVSESCESYFQRYRRRAHVTPKSY 3042
Query: 255 ---------VFASSLNFAELEAEKNMSSGGILRQCLRLVCTCA-VRNCLECKERHRALLN 304
++A + F +AE+ M+ G L + + + A + L KE+ A+ +
Sbjct: 3043 LSFINGYKNIYAEKVKFINEQAER-MNIG--LDKLMEASESVAKLSQDLAVKEKELAVAS 3099
Query: 305 SPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKD-LHKLLQDMDVNRLRAA 363
A + L + AQ S K N+V VKD K++ ++D +++A
Sbjct: 3100 IKA------DEVLAEVTVSAQASAKIKNEV--------QEVKDKAQKIVDEIDSEKVKAE 3145
Query: 364 IYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALS 408
+E +K A + A + I ++ R + +PP ++ R +
Sbjct: 3146 --SKLEAAKPALEEAEAALNTIKPNDIATVRKLAKPPHLIMRIMD 3188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,232,126
Number of Sequences: 539616
Number of extensions: 6458950
Number of successful extensions: 17431
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17393
Number of HSP's gapped (non-prelim): 34
length of query: 462
length of database: 191,569,459
effective HSP length: 121
effective length of query: 341
effective length of database: 126,275,923
effective search space: 43060089743
effective search space used: 43060089743
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)