Query psy10488
Match_columns 462
No_of_seqs 79 out of 107
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 19:26:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03224 V-ATPase_H_N: V-ATPas 95.3 0.027 5.9E-07 56.0 5.5 94 42-138 56-159 (312)
2 cd00256 VATPase_H VATPase_H, r 92.7 0.26 5.7E-06 52.7 6.8 98 40-139 52-153 (429)
3 PF11698 V-ATPase_H_C: V-ATPas 87.9 0.35 7.5E-06 43.7 2.2 74 41-115 43-116 (119)
4 cd00020 ARM Armadillo/beta-cat 87.2 0.98 2.1E-05 36.5 4.2 94 43-140 9-102 (120)
5 PF04826 Arm_2: Armadillo-like 84.9 5.9 0.00013 39.6 9.2 167 37-229 8-174 (254)
6 PF11707 Npa1: Ribosome 60S bi 83.6 8.5 0.00018 39.2 9.9 162 20-197 42-218 (330)
7 PF13251 DUF4042: Domain of un 81.8 4 8.7E-05 39.1 6.4 123 83-224 38-162 (182)
8 PF07637 PSD5: Protein of unkn 80.2 8.8 0.00019 30.6 6.9 55 20-76 3-58 (64)
9 PF06371 Drf_GBD: Diaphanous G 76.3 2.5 5.5E-05 38.1 3.1 96 10-112 77-185 (187)
10 PF08045 CDC14: Cell division 74.9 5.3 0.00011 40.4 5.2 93 21-114 108-207 (257)
11 PF10508 Proteasom_PSMB: Prote 72.6 34 0.00074 37.0 10.9 150 56-227 174-328 (503)
12 PF12717 Cnd1: non-SMC mitotic 72.0 10 0.00023 35.0 6.1 53 65-123 11-63 (178)
13 PF02985 HEAT: HEAT repeat; I 67.3 3.5 7.6E-05 28.0 1.4 27 89-115 4-30 (31)
14 cd00020 ARM Armadillo/beta-cat 66.6 7 0.00015 31.5 3.3 68 43-112 51-118 (120)
15 PF10508 Proteasom_PSMB: Prote 64.4 30 0.00064 37.5 8.5 104 46-156 43-146 (503)
16 PF11865 DUF3385: Domain of un 63.2 2.2 4.7E-05 39.5 -0.3 43 79-121 4-47 (160)
17 PF10165 Ric8: Guanine nucleot 55.9 39 0.00084 36.2 7.5 103 39-143 20-136 (446)
18 KOG2147|consensus 52.2 31 0.00068 39.9 6.3 111 106-216 437-568 (823)
19 PF14500 MMS19_N: Dos2-interac 51.7 1.5E+02 0.0033 29.7 10.5 49 93-142 7-55 (262)
20 PF10521 DUF2454: Protein of u 50.1 40 0.00086 33.7 6.1 49 89-138 123-171 (282)
21 cd00256 VATPase_H VATPase_H, r 46.6 15 0.00032 39.7 2.6 35 81-115 392-426 (429)
22 PF08324 PUL: PUL domain; Int 46.4 48 0.001 32.1 5.9 66 16-82 15-85 (268)
23 KOG0166|consensus 42.1 75 0.0016 35.4 7.1 164 17-196 209-377 (514)
24 KOG4535|consensus 40.4 1.8E+02 0.0038 33.1 9.5 121 77-224 39-167 (728)
25 TIGR03440 unchr_TIGR03440 cons 40.3 64 0.0014 34.4 6.1 64 10-76 89-152 (406)
26 PF08569 Mo25: Mo25-like; Int 40.1 9.1 0.0002 39.8 -0.1 55 59-113 181-237 (335)
27 PF12830 Nipped-B_C: Sister ch 39.7 1.1E+02 0.0024 28.8 7.0 121 90-220 13-143 (187)
28 PF00034 Cytochrom_C: Cytochro 37.3 28 0.00062 26.5 2.3 17 37-53 74-90 (91)
29 PF03224 V-ATPase_H_N: V-ATPas 37.3 3E+02 0.0065 27.6 10.0 187 19-226 72-279 (312)
30 KOG2171|consensus 35.7 43 0.00093 40.2 4.3 67 53-121 217-285 (1075)
31 KOG2160|consensus 32.5 1E+02 0.0022 32.8 6.0 153 54-224 95-247 (342)
32 PF13925 Katanin_con80: con80 32.5 1.2E+02 0.0025 28.3 5.9 89 17-114 10-98 (164)
33 PF09385 HisK_N: Histidine kin 31.0 1.2E+02 0.0026 28.4 5.5 73 11-85 33-117 (133)
34 smart00185 ARM Armadillo/beta- 30.6 22 0.00047 24.1 0.6 32 81-112 8-39 (41)
35 PF00514 Arm: Armadillo/beta-c 29.4 19 0.00041 25.4 0.1 33 80-112 7-39 (41)
36 PF08568 Kinetochor_Ybp2: Unch 28.7 2.1E+02 0.0046 31.9 8.1 147 40-198 388-546 (633)
37 KOG2759|consensus 28.6 46 0.001 36.3 2.8 72 43-115 368-439 (442)
38 PF12719 Cnd3: Nuclear condens 27.4 4E+02 0.0086 26.6 9.0 111 94-220 36-146 (298)
39 PF05099 TerB: Tellurite resis 26.7 1.5E+02 0.0033 25.6 5.3 90 9-113 15-107 (140)
40 smart00324 RhoGAP GTPase-activ 26.2 2.2E+02 0.0048 25.6 6.4 102 39-144 30-152 (174)
41 PF13646 HEAT_2: HEAT repeats; 25.2 12 0.00025 29.4 -1.8 27 86-112 32-58 (88)
42 PF01602 Adaptin_N: Adaptin N 24.8 79 0.0017 32.9 3.7 149 43-228 269-417 (526)
43 PF01713 Smr: Smr domain; Int 23.6 1.5E+02 0.0033 23.9 4.4 45 233-285 4-53 (83)
44 PF12612 TFCD_C: Tubulin foldi 23.0 3.1E+02 0.0068 25.8 7.0 74 20-115 81-159 (193)
45 PF12213 Dpoe2NT: DNA polymera 22.4 2.8E+02 0.0061 23.1 5.8 54 18-75 3-56 (73)
46 PF13862 BCIP: p21-C-terminal 21.8 1.1E+02 0.0025 29.4 3.8 115 39-159 13-143 (194)
47 PF00941 FAD_binding_5: FAD bi 21.2 31 0.00068 32.0 -0.1 41 252-292 64-105 (171)
48 KOG4035|consensus 21.2 3.6E+02 0.0077 29.5 7.6 66 48-113 233-310 (411)
49 PLN03200 cellulose synthase-in 20.4 3.3E+02 0.0071 35.5 8.2 138 83-227 486-648 (2102)
50 PF10363 DUF2435: Protein of u 20.4 1.8E+02 0.0039 25.0 4.4 50 90-144 8-57 (92)
51 PF04627 ATP-synt_Eps: Mitocho 20.2 40 0.00086 26.4 0.4 15 284-298 17-31 (50)
No 1
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.34 E-value=0.027 Score=56.02 Aligned_cols=94 Identities=24% Similarity=0.374 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhh-cccccHHHHHHHHHHHHhcCCCcchhhhh----hcC--CeeEeeecccCCCchhHHhHHHHHHHHHh
Q psy10488 42 ELQSILNYLTTV-QEDENLHDVLQTLISLMCDHPACLVPAFD----MKQ--GVRTVFKLLTSQSQLIRLQALKLLGFFLS 114 (462)
Q Consensus 42 El~AIlnfl~t~-~Ed~nl~DVL~mli~LLsE~P~~~~p~fd----~~~--Gi~iffkLL~s~sE~IRl~ALKlLG~fL~ 114 (462)
-.+.+++.+.++ +.++.+.=||.++-+++.+.|. ..+.|- ... -...|+++|.+.+..|...|.++|+.+++
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 367888999999 9999999999999999999995 443333 223 37899999999999999999999999999
Q ss_pred cCCccccc---cccCcchhHHHHHHHH
Q psy10488 115 RSTHKRKY---DVMSPHNLYTLLAERL 138 (462)
Q Consensus 115 ~~~~kRK~---~~m~~~~lfslLseRL 138 (462)
..+..... +.+ ..+|..|++.+
T Consensus 135 ~~~~~~~~~~~~~l--~~ll~~L~~~l 159 (312)
T PF03224_consen 135 QGPKRSEKLVKEAL--PKLLQWLSSQL 159 (312)
T ss_dssp STTT--HHHHHHHH--HHHHHHHH-TT
T ss_pred cCCccccchHHHHH--HHHHHHHHHhh
Confidence 88877665 333 55666666633
No 2
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=92.73 E-value=0.26 Score=52.66 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhh----cCCeeEeeecccCCCchhHHhHHHHHHHHHhc
Q psy10488 40 EDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDM----KQGVRTVFKLLTSQSQLIRLQALKLLGFFLSR 115 (462)
Q Consensus 40 ~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~----~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~ 115 (462)
+.=.++++|.+.+++.++.+.=||.|+-+++.+.|+...-|.|. ..-...|+++|.+++..|-..|.++|+.+.+.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 45578999999999999999999999999999998866656654 56788999999999999999999999999987
Q ss_pred CCccccccccCcchhHHHHHHHHh
Q psy10488 116 STHKRKYDVMSPHNLYTLLAERLL 139 (462)
Q Consensus 116 ~~~kRK~~~m~~~~lfslLseRL~ 139 (462)
.+...... .-..+|+.+.+.|.
T Consensus 132 ~~~~~~~~--~l~~~~~~l~~~l~ 153 (429)
T cd00256 132 GLAKMEGS--DLDYYFNWLKEQLN 153 (429)
T ss_pred Cccccchh--HHHHHHHHHHHHhh
Confidence 76422211 12224445555554
No 3
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.92 E-value=0.35 Score=43.69 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhc
Q psy10488 41 DELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSR 115 (462)
Q Consensus 41 ~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~ 115 (462)
.=++.|+++|.+++|..++.=+.+=|=..+..+|.+ .-.+++.||=..+.+||..+++.||-.||+.+.+++..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 347788889988888887765555555556667774 45557889999999999999999999999999999864
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=87.16 E-value=0.98 Score=36.47 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccc
Q psy10488 43 LQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKY 122 (462)
Q Consensus 43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~ 122 (462)
++.++.++..-+ ..+...--..+.-++.+.......+-..+|+..+.++|...+..+|..|+..|+.+....+. ..
T Consensus 9 i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~ 84 (120)
T cd00020 9 LPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED--NK 84 (120)
T ss_pred hHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH--HH
Confidence 455666664332 33333334445556665444555555679999999999999999999999999999865442 22
Q ss_pred cccCcchhHHHHHHHHhc
Q psy10488 123 DVMSPHNLYTLLAERLLQ 140 (462)
Q Consensus 123 ~~m~~~~lfslLseRL~~ 140 (462)
+.+...++-..+.+.|-.
T Consensus 85 ~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred HHHHHCCChHHHHHHHhc
Confidence 333444566666665543
No 5
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=84.88 E-value=5.9 Score=39.56 Aligned_cols=167 Identities=15% Similarity=0.143 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcC
Q psy10488 37 GVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRS 116 (462)
Q Consensus 37 ~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~ 116 (462)
-...+|++.++.+|...+|..--+-+ -+.+.-.+.+| .-..+.-..||+.++.++|..++..+|..||+.|.-+= .
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~a-l~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls--~ 83 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKA-LIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS--V 83 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHH-HHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC--C
Confidence 46789999999999988776544443 33444344443 22344446699999999999999999999999998653 2
Q ss_pred CccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCc
Q psy10488 117 THKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSK 196 (462)
Q Consensus 117 ~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~ 196 (462)
..+.+ ..++. ...-+-+....++-. |...-+.|-- +.++|-.-.+ +.-+ ...+..++++|....
T Consensus 84 ~~en~-~~Ik~--~i~~Vc~~~~s~~ln-s~~Q~agLrl--L~nLtv~~~~--------~~~l--~~~i~~ll~LL~~G~ 147 (254)
T PF04826_consen 84 NDENQ-EQIKM--YIPQVCEETVSSPLN-SEVQLAGLRL--LTNLTVTNDY--------HHML--ANYIPDLLSLLSSGS 147 (254)
T ss_pred ChhhH-HHHHH--HHHHHHHHHhcCCCC-CHHHHHHHHH--HHccCCCcch--------hhhH--HhhHHHHHHHHHcCC
Confidence 22222 22332 133333333333311 1111233332 3344432211 1111 113444567776543
Q ss_pred chhHHHHHHHHHHHHHHHHhhcChhhhhHHHhh
Q psy10488 197 QSELLLEVKKLFLSDLTLLCNNNRENRRTVLQM 229 (462)
Q Consensus 197 ~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~ 229 (462)
.. +|..-|. ++.-++.||++.+.+++.
T Consensus 148 ~~-----~k~~vLk-~L~nLS~np~~~~~Ll~~ 174 (254)
T PF04826_consen 148 EK-----TKVQVLK-VLVNLSENPDMTRELLSA 174 (254)
T ss_pred hH-----HHHHHHH-HHHHhccCHHHHHHHHhc
Confidence 32 3444455 677789999999999865
No 6
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.58 E-value=8.5 Score=39.24 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHh-cCCCcchhhhhhcC-CeeEeeecccCC
Q psy10488 20 IRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMC-DHPACLVPAFDMKQ-GVRTVFKLLTSQ 97 (462)
Q Consensus 20 IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLs-E~P~~~~p~fd~~~-Gi~iffkLL~s~ 97 (462)
.+.+...+++.++.. .++-|.+.|...+.. -..=+|.|+.++.+ ..++..-.+++..+ ...++-+|+..+
T Consensus 42 ~~~~g~~l~~~iL~~-------~~k~lyr~L~~~~~~-~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~ 113 (330)
T PF11707_consen 42 FQSYGLELIRSILQN-------HLKLLYRSLSSSKPS-LTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPR 113 (330)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHhCcCcHH-HHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccc
Confidence 344444555544422 366666776666632 23378888888888 54444446666555 445677777443
Q ss_pred C-------------chhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccc
Q psy10488 98 S-------------QLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQ 164 (462)
Q Consensus 98 s-------------E~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq 164 (462)
. ..||-..++|+--|+...++.-|.+.++.+.+++.+- .+....+..|=....++|-+++
T Consensus 114 ~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~----k~l~~D~~~~v~~iL~~l~~~V--- 186 (330)
T PF11707_consen 114 KKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALF----KGLRKDPPETVILILETLKDKV--- 186 (330)
T ss_pred cccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHH----hcccCCCHHHHHHHHHHHHHHh---
Confidence 2 2999999999999999999998889999998877654 4444455555555555555533
Q ss_pred cccccCCCCCCcccccCchHHHHHHHHHhcCcc
Q psy10488 165 ILYTRHPEPESHYRLENPMILKVVATLIRQSKQ 197 (462)
Q Consensus 165 ~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~ 197 (462)
+....-....-++++|...|.-|+.+-....+
T Consensus 187 -l~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~ 218 (330)
T PF11707_consen 187 -LKDSSVSRSTKCKLFNEWTLSQLASLYSRDGE 218 (330)
T ss_pred -ccCCCCChhhhhhhcCHHHHHHHHHHhcccCC
Confidence 22233333344799999999999997776655
No 7
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=81.78 E-value=4 Score=39.09 Aligned_cols=123 Identities=18% Similarity=0.147 Sum_probs=84.4
Q ss_pred hcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCcc-cccc-ccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcc
Q psy10488 83 MKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHK-RKYD-VMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEH 160 (462)
Q Consensus 83 ~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~k-RK~~-~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~ 160 (462)
.......+--++.-++.-+|..|++++..+|.++..= ...+ ...+..=|+.+|.+|-.-- ..++.+|.-.|.-.
T Consensus 38 ~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i----~~lH~~Ll~~L~~E 113 (182)
T PF13251_consen 38 RPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMI----MELHRGLLLALQAE 113 (182)
T ss_pred CCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 3345556666788899999999999999999885221 1111 2244557777788876322 45577777766543
Q ss_pred cccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhh
Q psy10488 161 ISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRR 224 (462)
Q Consensus 161 iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRr 224 (462)
-++.. ..++||+++-|+++++=.-=.+.+-..+++.+..++.++-.|.+
T Consensus 114 ~~~~~---------------l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~ 162 (182)
T PF13251_consen 114 KSPPV---------------LTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVR 162 (182)
T ss_pred cccHH---------------HHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHH
Confidence 33332 57999999999999887655566777788888888887555544
No 8
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=80.16 E-value=8.8 Score=30.63 Aligned_cols=55 Identities=13% Similarity=0.308 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcc-cccHHHHHHHHHHHHhcCCCc
Q psy10488 20 IRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQE-DENLHDVLQTLISLMCDHPAC 76 (462)
Q Consensus 20 IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~E-d~nl~DVL~mli~LLsE~P~~ 76 (462)
.|..|-.|+.+-. +.+++++|++.++.+.....+ .....+.+...+..+-..|..
T Consensus 3 a~~~l~~Fa~rAf--RRp~~~~e~~~~~~~~~~~~~~g~~~~~a~~~~l~aiL~SP~F 58 (64)
T PF07637_consen 3 AREILRRFARRAF--RRPLTDEEVDRYLALYDSARAQGEDFEEALKEALQAILCSPSF 58 (64)
T ss_pred HHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCcch
Confidence 5888999999977 669999999999999998777 688999998888877777874
No 9
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=76.31 E-value=2.5 Score=38.15 Aligned_cols=96 Identities=19% Similarity=0.295 Sum_probs=66.6
Q ss_pred CCCCh-hhHHHHHHHHH----HHHHHHHhcCCCCCHHHHHHHHHHHhhhcccc--------cHHHHHHHHHHHHhcCCCc
Q psy10488 10 PRPAQ-KDILAIRAYIL----LFLKQLMMLGPGVKEDELQSILNYLTTVQEDE--------NLHDVLQTLISLMCDHPAC 76 (462)
Q Consensus 10 ~RPs~-eEI~~IR~~LL----~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~--------nl~DVL~mli~LLsE~P~~ 76 (462)
.+|.. +.+.+||-.|= ++++.-+. .+=+.+|+++|..+++.. ..+++|.- ++.+.+++.+
T Consensus 77 ~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~------~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~C-lkal~n~~~G 149 (187)
T PF06371_consen 77 SRPSTSKILKSLRVSLRTNPISWVQEFLE------LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRC-LKALMNTKYG 149 (187)
T ss_dssp TT--HHHHHHHHHHHHHHS-HHHHHHH-H------HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHH-HHHHTSSHHH
T ss_pred ccCccHHHHHHHHHHhccCCchHHHHhcc------CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHH-HHHHHccHHH
Confidence 34444 55555554442 34444332 466788999888876653 34455555 4677777888
Q ss_pred chhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHH
Q psy10488 77 LVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFF 112 (462)
Q Consensus 77 ~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~f 112 (462)
+.-+++..+++..+...|.+++-.+|.+|+++|+.+
T Consensus 150 ~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 150 LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999976
No 10
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=74.91 E-value=5.3 Score=40.42 Aligned_cols=93 Identities=28% Similarity=0.459 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeeccc
Q psy10488 21 RAYILLFLKQLMMLGPGVK-----EDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLT 95 (462)
Q Consensus 21 R~~LL~~lkqLi~~~~~is-----~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~ 95 (462)
...-|.++..+.....+-+ +.-++-++++|.......--.-+|..++.+|.++|.-+- .|+..+|+.++..+++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r-~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQR-DFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHH-HHHHhCCHHHHHHHHc
Confidence 3455677777666654442 567888999997777666667799999999999887655 8999999999999998
Q ss_pred CC--CchhHHhHHHHHHHHHh
Q psy10488 96 SQ--SQLIRLQALKLLGFFLS 114 (462)
Q Consensus 96 s~--sE~IRl~ALKlLG~fL~ 114 (462)
++ ++.+|+-.++||=+++.
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 76 47788888888877774
No 11
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=72.59 E-value=34 Score=37.00 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=99.7
Q ss_pred cccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHH
Q psy10488 56 DENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLA 135 (462)
Q Consensus 56 d~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLs 135 (462)
+..-.-|+++++.+.+.+|..+ ......|-+.-+++.|.+++..+|+.|+++|+.+-. .++- ...+..++++..|.
T Consensus 174 ~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g--~~yL~~~gi~~~L~ 249 (503)
T PF10508_consen 174 DIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHG--LQYLEQQGIFDKLS 249 (503)
T ss_pred HHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhH--HHHHHhCCHHHHHH
Confidence 3444568888888877654433 455556677788888999999999999999999987 3333 35567789999999
Q ss_pred HHHhcCCCc---chHHHHHH--HHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHH
Q psy10488 136 ERLLQHESS---LSFATYNV--LYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLS 210 (462)
Q Consensus 136 eRL~~~~~~---lt~~tYn~--LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~ 210 (462)
+.+..-... -++.+++. +|.-+.-- +|+.+. -.+|.++..++..+...+.+.- ..-=
T Consensus 250 ~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~-----------~~~p~~~~~l~~~~~s~d~~~~------~~A~ 311 (503)
T PF10508_consen 250 NLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVL-----------ELYPAFLERLFSMLESQDPTIR------EVAF 311 (503)
T ss_pred HHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHH-----------HHHHHHHHHHHHHhCCCChhHH------HHHH
Confidence 988533211 22333444 33332221 444432 2369999999988775555422 1134
Q ss_pred HHHHHhhcChhhhhHHH
Q psy10488 211 DLTLLCNNNRENRRTVL 227 (462)
Q Consensus 211 DLl~L~~~N~eNRrtlL 227 (462)
|-+..+.++.+-+..|+
T Consensus 312 dtlg~igst~~G~~~L~ 328 (503)
T PF10508_consen 312 DTLGQIGSTVEGKQLLL 328 (503)
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 66778888888998884
No 12
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=71.97 E-value=10 Score=34.97 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCcccccc
Q psy10488 65 TLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYD 123 (462)
Q Consensus 65 mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~ 123 (462)
.+-+|...+|..+-|+.+. +++.|..+++.||-.||.+|.+++..-.-|-|+.
T Consensus 11 ~l~DL~~r~~~~ve~~~~~------l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~ 63 (178)
T PF12717_consen 11 ALGDLCIRYPNLVEPYLPN------LYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQ 63 (178)
T ss_pred HHHHHHHhCcHHHHhHHHH------HHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhh
Confidence 3445556677666566543 5678888899999999999999888777776654
No 13
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=67.32 E-value=3.5 Score=28.02 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=22.9
Q ss_pred EeeecccCCCchhHHhHHHHHHHHHhc
Q psy10488 89 TVFKLLTSQSQLIRLQALKLLGFFLSR 115 (462)
Q Consensus 89 iffkLL~s~sE~IRl~ALKlLG~fL~~ 115 (462)
.++++|..+++.||-.|.+.||.+...
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999998753
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=66.63 E-value=7 Score=31.49 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHH
Q psy10488 43 LQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFF 112 (462)
Q Consensus 43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~f 112 (462)
+..+++++.. ++..+-..--..+.-+++++......+-+.|++..+.++|...++.+|-.|+.+|+.+
T Consensus 51 i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 51 LPALVQLLKS--EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred hHHHHHHHhC--CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4455555543 2333333333344444445544455555678999999999999999999999999865
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=64.44 E-value=30 Score=37.46 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=65.8
Q ss_pred HHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCcccccccc
Q psy10488 46 ILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVM 125 (462)
Q Consensus 46 Ilnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m 125 (462)
|.+.|.+. +.+++..+...|-+++...+. ... ..+....+...|..++..||.+|++-+|+..... ....+.+
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~--~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~--~~~~~~~ 115 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALSP--DSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS--EGAAQLL 115 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC--HHHHHHh
Confidence 56666655 556666655556666654311 111 3344466778899999999999999999988333 3345677
Q ss_pred CcchhHHHHHHHHhcCCCcchHHHHHHHHHH
Q psy10488 126 SPHNLYTLLAERLLQHESSLSFATYNVLYEI 156 (462)
Q Consensus 126 ~~~~lfslLseRL~~~~~~lt~~tYn~LfEI 156 (462)
..+.++.++..-|..-........-++|-.+
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l 146 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKL 146 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 8888888888877533333333344444443
No 16
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=63.25 E-value=2.2 Score=39.51 Aligned_cols=43 Identities=30% Similarity=0.463 Sum_probs=31.1
Q ss_pred hhhhhcCCeeEeeecccCC-CchhHHhHHHHHHHHHhcCCcccc
Q psy10488 79 PAFDMKQGVRTVFKLLTSQ-SQLIRLQALKLLGFFLSRSTHKRK 121 (462)
Q Consensus 79 p~fd~~~Gi~iffkLL~s~-sE~IRl~ALKlLG~fL~~~~~kRK 121 (462)
|.++-.+=..+++++|+++ +..+|.-++|+||-+=+--|.+.|
T Consensus 4 PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 4 PYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred hHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 3444444445667788777 589999999999988776666655
No 17
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=55.90 E-value=39 Score=36.23 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHH---------hhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCC-----CchhHHh
Q psy10488 39 KEDELQSILNYL---------TTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQ-----SQLIRLQ 104 (462)
Q Consensus 39 s~~El~AIlnfl---------~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~-----sE~IRl~ 104 (462)
+++-++.++.|= ....+.+...++|.-|..+|-.+|..= ..|...++..-+.+.|+.. +..+..+
T Consensus 20 ~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR-~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl 98 (446)
T PF10165_consen 20 TEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSAR-QIFVDLGLAEKLCERLKNYSDSSQPSDVEFL 98 (446)
T ss_pred cHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHH-HHHHHcCcHHHHHHHHHcccccCCChhHHHH
Confidence 466788888777 556778888999999999999876544 5666667777788889888 7788888
Q ss_pred HHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCC
Q psy10488 105 ALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHES 143 (462)
Q Consensus 105 ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~ 143 (462)
.+++| |++...+..-....++.+.+-..|.+.|-.|..
T Consensus 99 ~~RLL-FLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~ 136 (446)
T PF10165_consen 99 DSRLL-FLLTALRPDDRKKLIEEHHGVELLTEALERHLK 136 (446)
T ss_pred HHHHH-HHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88876 555555665555777887777777777754443
No 18
>KOG2147|consensus
Probab=52.23 E-value=31 Score=39.95 Aligned_cols=111 Identities=21% Similarity=0.242 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhccccccccccc-CCCCC----------
Q psy10488 106 LKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTR-HPEPE---------- 174 (462)
Q Consensus 106 LKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~-h~~~d---------- 174 (462)
=||.|++|.+.-.--+.+++..-.++..+-.-|..+...+....|++.+..+++.|...+-..+ -+++.
T Consensus 437 ~kf~~~LLqy~~dLs~~~p~~~~~ll~~l~~~L~~l~q~~pe~~~~~~~~~ll~~~~e~~e~~k~k~~~~~psl~~Lv~f 516 (823)
T KOG2147|consen 437 EKFYGVLLQYFDDLSKQDPLTNFQLLEMLVAHLISLAQMFPEIASIVRCVRLLERIHEKGEQIKQKNHPVSPSLDDLVFF 516 (823)
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHhcccCccCCCCcchhhhh
Confidence 4778888887777777788888889999999998888888889999999999977766554322 22222
Q ss_pred -------CcccccCchH---HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHh
Q psy10488 175 -------SHYRLENPMI---LKVVATLIRQSKQSELLLEVKKLFLSDLTLLC 216 (462)
Q Consensus 175 -------s~~~~~nP~I---LkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~ 216 (462)
+++-|-||.| |-++..+|.+|+-.+-.=..++.||-.++...
T Consensus 517 ~l~g~LFptSDf~HpVVtPalllm~e~L~~~p~~Sl~diakglfl~~ivley 568 (823)
T KOG2147|consen 517 KLTGLLFPTSDFRHPVVTPALLLMSEALSQSPIASLQDIAKGLFLANIVLEY 568 (823)
T ss_pred hhhcccccccccccccccHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHH
Confidence 3345668875 56678899999987655556667666555443
No 19
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=51.70 E-value=1.5e+02 Score=29.73 Aligned_cols=49 Identities=31% Similarity=0.348 Sum_probs=36.8
Q ss_pred cccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCC
Q psy10488 93 LLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHE 142 (462)
Q Consensus 93 LL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~ 142 (462)
-|.++++.+|-.|+++|+..|.++|++.= ..-+-+-++.-..+||--+.
T Consensus 7 ~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L-~~~ev~~L~~F~~~rl~D~~ 55 (262)
T PF14500_consen 7 YLTSEDPIIRAKALELLSEVLERLPPDFL-SRQEVQVLLDFFCSRLDDHA 55 (262)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhCCHhhc-cHHHHHHHHHHHHHHhccHh
Confidence 37899999999999999999999997631 11134667777778885443
No 20
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=50.06 E-value=40 Score=33.68 Aligned_cols=49 Identities=22% Similarity=0.495 Sum_probs=38.3
Q ss_pred EeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHH
Q psy10488 89 TVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERL 138 (462)
Q Consensus 89 iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL 138 (462)
.+++|+-..+..+|+.|+++|..|+..++... .+.....+++..+.+-|
T Consensus 123 ~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 123 PILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-WDILRRTGLFSVFEDAL 171 (282)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh-hHHHHHcChHHHHHHHH
Confidence 46788888999999999999999999888776 34445556666666655
No 21
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=46.60 E-value=15 Score=39.71 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=30.5
Q ss_pred hhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhc
Q psy10488 81 FDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSR 115 (462)
Q Consensus 81 fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~ 115 (462)
.++.||=..+.+|+..+++.||-.||+.+++++.+
T Consensus 392 ~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 392 VEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 34567888899999999999999999999999754
No 22
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=46.36 E-value=48 Score=32.08 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccccc----HHHHHHHHHHHHhcCCC-cchhhhh
Q psy10488 16 DILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDEN----LHDVLQTLISLMCDHPA-CLVPAFD 82 (462)
Q Consensus 16 EI~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~n----l~DVL~mli~LLsE~P~-~~~p~fd 82 (462)
++-++...|..|-+++ ..+..++++|+.+|-.++.+...... ..+....+..++.+-|. ...|.+|
T Consensus 15 n~~~i~~KL~efn~~~-~~~~~l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~~~~fP~lD 85 (268)
T PF08324_consen 15 NLDKILKKLKEFNEKL-QKELKLSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLSWPPESRFPALD 85 (268)
T ss_dssp -HHHHHHHHHHHHTTS-HCCT-S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCCS-CCC-HHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccccCCCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHhCCCccchhHHh
Confidence 4566777777887764 56778899999999999999888876 88899999999988887 6669999
No 23
>KOG0166|consensus
Probab=42.09 E-value=75 Score=35.41 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhh---hcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeee
Q psy10488 17 ILAIRAYILLFLKQLMMLGPGV-KEDELQSILNYLTT---VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFK 92 (462)
Q Consensus 17 I~~IR~~LL~~lkqLi~~~~~i-s~~El~AIlnfl~t---~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffk 92 (462)
+.-+|.....+=+ |-..+.+- ..+.++.++.=|.. ..|.+=+.|. -..++-|+++|.--+.++-.-|.+.-.+.
T Consensus 209 ~~~lRn~tW~LsN-lcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da-~WAlsyLsdg~ne~iq~vi~~gvv~~LV~ 286 (514)
T KOG0166|consen 209 LSMLRNATWTLSN-LCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA-CWALSYLTDGSNEKIQMVIDAGVVPRLVD 286 (514)
T ss_pred hHHHHHHHHHHHH-HHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCChHHHHHHHHccchHHHHH
Confidence 3344444444433 33333222 23555555544433 3443333343 56788889999999999999999999999
Q ss_pred cccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHh-cCCCcchHHHHHHHHHHHhcccccccccccCC
Q psy10488 93 LLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLL-QHESSLSFATYNVLYEILTEHISQQILYTRHP 171 (462)
Q Consensus 93 LL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~-~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~ 171 (462)
||+..+-.++.+||+-+|..- .-..-.+..+--++++.-++.=|. .+..++..-.+=++=.|--| ++.++.
T Consensus 287 lL~~~~~~v~~PaLRaiGNIv--tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG--~~~qiq---- 358 (514)
T KOG0166|consen 287 LLGHSSPKVVTPALRAIGNIV--TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAG--NQEQIQ---- 358 (514)
T ss_pred HHcCCCcccccHHHhhcccee--eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcC--CHHHHH----
Confidence 999999999999999999944 444455667777778888888777 44544666666677777776 343322
Q ss_pred CCCCcccccCchHHHHHHHHHhcCc
Q psy10488 172 EPESHYRLENPMILKVVATLIRQSK 196 (462)
Q Consensus 172 ~~ds~~~~~nP~ILkvIa~LL~qs~ 196 (462)
.+.+-.++.++.+++...+
T Consensus 359 ------aVida~l~p~Li~~l~~~e 377 (514)
T KOG0166|consen 359 ------AVIDANLIPVLINLLQTAE 377 (514)
T ss_pred ------HHHHcccHHHHHHHHhccc
Confidence 1334577888888888444
No 24
>KOG4535|consensus
Probab=40.40 E-value=1.8e+02 Score=33.10 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=84.2
Q ss_pred chhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCc---ch-----HH
Q psy10488 77 LVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESS---LS-----FA 148 (462)
Q Consensus 77 ~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~---lt-----~~ 148 (462)
++|--|..|.-+...==|+-++.-.|-.|||+++.+|.++. -|-..++-+.-|.|+ .+ ..
T Consensus 39 ~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk------------~fls~a~~~~~~~ftpf~v~~a~si~~ 106 (728)
T KOG4535|consen 39 FIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSK------------QFLSVAEDTSDHAFTPFSVMIACSIRE 106 (728)
T ss_pred ecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhH------------HHHHHHhccCCcCCCchHHHHHHHHHH
Confidence 34444444555555556888999999999999999997653 233333333322221 11 34
Q ss_pred HHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhh
Q psy10488 149 TYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRR 224 (462)
Q Consensus 149 tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRr 224 (462)
.|.+|..+|...-||+. .-|++|+.+.|+++.+=-.--|-.-..|-..++.++.++--|.+
T Consensus 107 ~~r~l~~~l~~e~~~~~---------------~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~ 167 (728)
T KOG4535|consen 107 LHRCLLLALVAESSSQT---------------VTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVR 167 (728)
T ss_pred HHHHHHHHHHHhcCchh---------------HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 58999999998888886 35899999999998876544455556788889999988877765
No 25
>TIGR03440 unchr_TIGR03440 conserved hypothetical protein TIGR03440. The model TIGR03438 describes a family of uncharacteriaed putative methyltransferases in bacteria. The family described here is a set of proteins also restricted to bacteria, and located close to the member of TIGR03438.
Probab=40.28 E-value=64 Score=34.36 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=48.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCc
Q psy10488 10 PRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPAC 76 (462)
Q Consensus 10 ~RPs~eEI~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~ 76 (462)
.||+.+||+.-|..+..-+..++... .. .+++.-++ .+.--||..+.|-+|.++.-+++++|..
T Consensus 89 ~~P~~~ev~~Yr~~V~~~v~~~l~~~-~~-~~~~~~~~-~lg~~HE~~H~E~~l~~~~~~~~~~p~~ 152 (406)
T TIGR03440 89 SRPSLAEVLAYRAHVDDAVLELLARA-DD-DDELLYLF-ELGLQHEQQHQELLLTDLLHLFSQNPLR 152 (406)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcC-Cc-ccchHHHH-HHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 78999999999999988888877532 12 23333333 4566899999999999998899988753
No 26
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=40.11 E-value=9.1 Score=39.82 Aligned_cols=55 Identities=27% Similarity=0.308 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCCcchhhhhhcC--CeeEeeecccCCCchhHHhHHHHHHHHH
Q psy10488 59 LHDVLQTLISLMCDHPACLVPAFDMKQ--GVRTVFKLLTSQSQLIRLQALKLLGFFL 113 (462)
Q Consensus 59 l~DVL~mli~LLsE~P~~~~p~fd~~~--Gi~iffkLL~s~sE~IRl~ALKlLG~fL 113 (462)
-.|....+-.+|..|+.....+++..- =...+-+||.+++=-+|.+|||+||-+|
T Consensus 181 asdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ell 237 (335)
T PF08569_consen 181 ASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELL 237 (335)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHH
Confidence 468888999999999988888876442 1226678999999999999999999998
No 27
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=39.66 E-value=1.1e+02 Score=28.79 Aligned_cols=121 Identities=22% Similarity=0.273 Sum_probs=63.0
Q ss_pred eeecccCCCchhHHhHHHHHHHHHhc-CCcccccc----cc--CcchhHHHHHHHHhcCCCcchHHHHHHH-HHHHhccc
Q psy10488 90 VFKLLTSQSQLIRLQALKLLGFFLSR-STHKRKYD----VM--SPHNLYTLLAERLLQHESSLSFATYNVL-YEILTEHI 161 (462)
Q Consensus 90 ffkLL~s~sE~IRl~ALKlLG~fL~~-~~~kRK~~----~m--~~~~lfslLseRL~~~~~~lt~~tYn~L-fEILle~i 161 (462)
|+++.-+++..+|..|+++++..+.. +.+=.... .+ .+...-.-.+.++...-+ .- |-.+ +-=..+|+
T Consensus 13 Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~--eK--~~s~v~~~~~~gi 88 (187)
T PF12830_consen 13 ILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELH--EK--HESLVESRYSEGI 88 (187)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHH--HH--hHHHHHHHHHHHH
Confidence 34556677778888888888887752 22111111 11 233333333333322110 01 1111 11122333
Q ss_pred ccccccccCCCCCCcc--cccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcCh
Q psy10488 162 SQQILYTRHPEPESHY--RLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNR 220 (462)
Q Consensus 162 Spq~v~~~h~~~ds~~--~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~ 220 (462)
..-..+++...++... +-.....+.-+.+++++++.+ |+.|++-++..++.+.
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~------R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKS------RRKFLKSLLKQFDFDL 143 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHh------HHHHHHHHHHHHHhhc
Confidence 3333333333333221 111677888999999977766 8899999999998876
No 28
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=37.35 E-value=28 Score=26.46 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHhhh
Q psy10488 37 GVKEDELQSILNYLTTV 53 (462)
Q Consensus 37 ~is~~El~AIlnfl~t~ 53 (462)
.++++|+++|++||.+.
T Consensus 74 ~ls~~e~~~l~ayl~sl 90 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRSL 90 (91)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 58999999999999874
No 29
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=37.32 E-value=3e+02 Score=27.65 Aligned_cols=187 Identities=19% Similarity=0.222 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCe
Q psy10488 19 AIRAYILLFLKQLMMLGPGVK-----------EDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGV 87 (462)
Q Consensus 19 ~IR~~LL~~lkqLi~~~~~is-----------~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi 87 (462)
...+++|.++.-++..+.... .+=...+++ +....|.--.+=..+++..+++..|....... ..-+
T Consensus 72 d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~--~~~l 148 (312)
T PF03224_consen 72 DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV--KEAL 148 (312)
T ss_dssp HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH--HHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchH--HHHH
Confidence 456788888887776654332 112455666 33344555555677788888887666444311 1111
Q ss_pred eEeeec----ccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHH-----hcCCCcchHHHHHHHHHHHh
Q psy10488 88 RTVFKL----LTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERL-----LQHESSLSFATYNVLYEILT 158 (462)
Q Consensus 88 ~iffkL----L~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL-----~~~~~~lt~~tYn~LfEILl 158 (462)
.-+|+. +++.+-...-.|+++|+.+| +.+.-|+ ...+ .+....+.+-| ..++..+ -..|.++|=+-+
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~-~f~~-~~~v~~l~~iL~~~~~~~~~~~~-Ql~Y~~ll~lWl 224 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQ-VFWK-SNGVSPLFDILRKQATNSNSSGI-QLQYQALLCLWL 224 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHH-HHHT-HHHHHHHHHHHH---------HH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHH-HHHh-cCcHHHHHHHHHhhcccCCCCch-hHHHHHHHHHHH
Confidence 233444 44455556688899999998 3444444 2233 77778888866 1233222 335777776654
Q ss_pred cccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChh-hhhHH
Q psy10488 159 EHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRE-NRRTV 226 (462)
Q Consensus 159 e~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~e-NRrtl 226 (462)
=--++... ..+.+..++..++++++.+.- -+|=+..+.=+..|++.+++ |...+
T Consensus 225 LSF~~~~~----------~~~~~~~~i~~L~~i~~~~~K----EKvvRv~la~l~Nl~~~~~~~~~~~m 279 (312)
T PF03224_consen 225 LSFEPEIA----------EELNKKYLIPLLADILKDSIK----EKVVRVSLAILRNLLSKAPKSNIELM 279 (312)
T ss_dssp HTTSHHHH----------HHHHTTSHHHHHHHHHHH--S----HHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred HhcCHHHH----------HHHhccchHHHHHHHHHhccc----chHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22244432 112233377778888875542 24555566777777777775 44443
No 30
>KOG2171|consensus
Probab=35.72 E-value=43 Score=40.19 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=52.0
Q ss_pred hcccccHHHHHHHHHHHHhcCCCcchhhhhhcC--CeeEeeecccCCCchhHHhHHHHHHHHHhcCCcccc
Q psy10488 53 VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQ--GVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRK 121 (462)
Q Consensus 53 ~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~--Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK 121 (462)
..|+++..++|..++.++..-|..+-|+|++.= +..|+-| +.-++.+|..||+++-.+...-|.+.|
T Consensus 217 ~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n--~~l~~~~R~~ALe~ivs~~e~Ap~~~k 285 (1075)
T KOG2171|consen 217 DGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKN--KELENSIRHLALEFLVSLSEYAPAMCK 285 (1075)
T ss_pred ccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc--ccccHHHHHHHHHHHHHHHHhhHHHhh
Confidence 456667899999999999998999999999762 2222222 345799999999999999988777755
No 31
>KOG2160|consensus
Probab=32.55 E-value=1e+02 Score=32.84 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=88.1
Q ss_pred cccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHH
Q psy10488 54 QEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTL 133 (462)
Q Consensus 54 ~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfsl 133 (462)
.+.+..+|.|.-+-.++ | +--.+--|-..||.+.++.+|.+.+..+|-.|..++|--..+.| +-+..+|+.. ..+.
T Consensus 95 ~~le~ke~ald~Le~lv-e-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP-~~Qe~v~E~~-~L~~ 170 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELV-E-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNP-KSQEQVIELG-ALSK 170 (342)
T ss_pred CCHHHHHHHHHHHHHHH-H-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHcc-cHHH
Confidence 33444555554433332 1 11222233366899999999999999999999999999887665 4555777777 6666
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Q psy10488 134 LAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLT 213 (462)
Q Consensus 134 LseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl 213 (462)
|...|. ...+.+.- -++||.| |--+ ||.+|-..--+.-+. ..++.+.+.+- +..-..++|..||-+.+
T Consensus 171 Ll~~ls-~~~~~~~r-~kaL~Ai-----ssLI---Rn~~~g~~~fl~~~G-~~~L~~vl~~~-~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 171 LLKILS-SDDPNTVR-TKALFAI-----SSLI---RNNKPGQDEFLKLNG-YQVLRDVLQSN-NTSVKLKRKALFLLSLL 238 (342)
T ss_pred HHHHHc-cCCCchHH-HHHHHHH-----HHHH---hcCcHHHHHHHhcCC-HHHHHHHHHcC-CcchHHHHHHHHHHHHH
Confidence 666676 44443332 5678875 2223 444444332122222 56666666642 22224455666665443
Q ss_pred HHhhcChhhhh
Q psy10488 214 LLCNNNRENRR 224 (462)
Q Consensus 214 ~L~~~N~eNRr 224 (462)
+...++++.
T Consensus 239 --l~~~~s~~d 247 (342)
T KOG2160|consen 239 --LQEDKSDED 247 (342)
T ss_pred --HHhhhhhhh
Confidence 344444443
No 32
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=32.54 E-value=1.2e+02 Score=28.31 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccC
Q psy10488 17 ILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTS 96 (462)
Q Consensus 17 I~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s 96 (462)
+.+=|..-|..+..+... +++++.++|+..++|..=+-|+|-.+.......--++--..+ =.-++-.||+|
T Consensus 10 vL~~R~~~L~~v~~~W~~------~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~~---lLP~i~~LL~S 80 (164)
T PF13925_consen 10 VLQSRLTNLQVVRTFWRR------NDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCVD---LLPLIEELLQS 80 (164)
T ss_pred HHHHHHHHHHHHHHHHhc------CcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHHH---HHHHHHHHHhC
Confidence 445566666666665544 789999999999999999999999887444432111110000 01234579999
Q ss_pred CCchhHHhHHHHHHHHHh
Q psy10488 97 QSQLIRLQALKLLGFFLS 114 (462)
Q Consensus 97 ~sE~IRl~ALKlLG~fL~ 114 (462)
++|.-..-||++|-.++.
T Consensus 81 k~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 81 KYESYISVALEMLRSILK 98 (164)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 999999999999888774
No 33
>PF09385 HisK_N: Histidine kinase N terminal; InterPro: IPR018984 This domain is found at the N-terminal of sensor histidine kinase proteins. ; PDB: 3PMC_B 3PMD_A.
Probab=31.01 E-value=1.2e+02 Score=28.37 Aligned_cols=73 Identities=11% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh--hhcccccHHHHHH-------HHHHHHhcCCC---cch
Q psy10488 11 RPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLT--TVQEDENLHDVLQ-------TLISLMCDHPA---CLV 78 (462)
Q Consensus 11 RPs~eEI~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~--t~~Ed~nl~DVL~-------mli~LLsE~P~---~~~ 78 (462)
=|.+++|+.=...++.++...+ +..+++.||+.+..=++ ++.-+.|+-|.++ +++..|++.|- -+.
T Consensus 33 D~~k~~i~~NG~~~~~lvie~l--~~~~~~~~i~~la~KiAkER~~A~iNIgeFVYN~NlGR~~~~~~l~~~~~~~~el~ 110 (133)
T PF09385_consen 33 DPFKEEIHQNGEAMFELVIEYL--REEISLEEIQQLAYKIAKERAEANINIGEFVYNVNLGRSELLKYLFKLGIDWNELQ 110 (133)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHH--TTSS-GGGGHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHCC---HHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHhhHhHHHHHHHHHhCCCCHHHHH
Confidence 4899999999999999999987 55888889999888765 4888999999886 67788887655 344
Q ss_pred hhhhhcC
Q psy10488 79 PAFDMKQ 85 (462)
Q Consensus 79 p~fd~~~ 85 (462)
|+.|+.|
T Consensus 111 ~~i~~IN 117 (133)
T PF09385_consen 111 PIIEKIN 117 (133)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 34
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=30.64 E-value=22 Score=24.06 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=27.3
Q ss_pred hhhcCCeeEeeecccCCCchhHHhHHHHHHHH
Q psy10488 81 FDMKQGVRTVFKLLTSQSQLIRLQALKLLGFF 112 (462)
Q Consensus 81 fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~f 112 (462)
+-..||+..+++||.+.++.|+-.|+..|+.+
T Consensus 8 i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 8 VVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34457889999999999999999999998875
No 35
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=29.37 E-value=19 Score=25.44 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=28.8
Q ss_pred hhhhcCCeeEeeecccCCCchhHHhHHHHHHHH
Q psy10488 80 AFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFF 112 (462)
Q Consensus 80 ~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~f 112 (462)
.+-.-||+..+++||.+.++.||-.|.-.||.+
T Consensus 7 ~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 7 AIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344668999999999999999999999999876
No 36
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=28.70 E-value=2.1e+02 Score=31.88 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=88.5
Q ss_pred HHHHHHHHHHH-----hhhcccccHHHHHHHHHHHHhcCCC---cchhhhhhcCCeeEeeec-ccCCCchhHHhHHHHHH
Q psy10488 40 EDELQSILNYL-----TTVQEDENLHDVLQTLISLMCDHPA---CLVPAFDMKQGVRTVFKL-LTSQSQLIRLQALKLLG 110 (462)
Q Consensus 40 ~~El~AIlnfl-----~t~~Ed~nl~DVL~mli~LLsE~P~---~~~p~fd~~~Gi~iffkL-L~s~sE~IRl~ALKlLG 110 (462)
.|=+.-+++|+ .......-+.|++-.+......... .-.|-..-..=++...+. ...+++.+|-.|+++++
T Consensus 388 ~d~i~l~lr~~~~~~~~~~~~~~gl~d~~~~l~~~~~~~~~~~~~~l~~~~~~~~~q~L~~i~~~~p~~~lR~~~~~ll~ 467 (633)
T PF08568_consen 388 PDHIYLLLRFLTPSLQSPSFQNKGLEDALLFLLWVALTSSSIELSELPSEVFMQFLQALLLISVYCPSPELRKIAFTLLT 467 (633)
T ss_pred HHHHHHHHHhcCccccchhhcchhHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 44566677787 6667777788888877766654332 122211111122222222 25789999999999999
Q ss_pred HHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccC---CCCCCcccccCchHHHH
Q psy10488 111 FFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRH---PEPESHYRLENPMILKV 187 (462)
Q Consensus 111 ~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h---~~~ds~~~~~nP~ILkv 187 (462)
+++...|.+-+ |..|.+-|- +.+.-+ ...++-.++-+.+..-.-.... ..+...+.|.+|.-+..
T Consensus 468 ~iL~~~p~~~r---------f~~i~dlLe-~c~~~~--~k~~~I~~lKd~i~~a~~~~~~~~~~~~~~~~~f~~~~~l~~ 535 (633)
T PF08568_consen 468 RILHLFPEETR---------FKFIRDLLE-NCPFES--LKASAIGWLKDEILKALQSSDSSDQDEPPRPNIFFTPERLSE 535 (633)
T ss_pred HHHHHCCcHhH---------HHHHHHHHh-cCCCHh--HHHHHHHHHHHHHHHHhccCCcccccccccCCcccCHHHHHH
Confidence 99998887765 556666554 333323 3555555555555333211000 01234678999999999
Q ss_pred HHHHHhcCcch
Q psy10488 188 VATLIRQSKQS 198 (462)
Q Consensus 188 Ia~LL~qs~~s 198 (462)
+..++-.+.+.
T Consensus 536 l~~li~~~~~~ 546 (633)
T PF08568_consen 536 LLSLILPPPEG 546 (633)
T ss_pred HHHHHhcCchh
Confidence 98888666554
No 37
>KOG2759|consensus
Probab=28.64 E-value=46 Score=36.34 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhc
Q psy10488 43 LQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSR 115 (462)
Q Consensus 43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~ 115 (462)
++-|+.+|.+++|..-|-=+.+=|-..+--+|.+ -..+++.||=..+++||..++..||-.||+.+-+++.+
T Consensus 368 lkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 368 LKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 5667777777776654432333233333334443 24677899999999999999999999999998887753
No 38
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=27.41 E-value=4e+02 Score=26.64 Aligned_cols=111 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred ccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCC
Q psy10488 94 LTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEP 173 (462)
Q Consensus 94 L~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ 173 (462)
+.+++..||-.|+++||.+=---..-.+ ..+.++..-+-.-...+....-.++||+++-+=....-....+.
T Consensus 36 v~~~~~~vR~~al~cLGl~~Lld~~~a~-------~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~- 107 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLGLCCLLDKELAK-------EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDND- 107 (298)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhChHHHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccC-
Q ss_pred CCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcCh
Q psy10488 174 ESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNR 220 (462)
Q Consensus 174 ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~ 220 (462)
.......++++..+++....+. ++-....-+-.|+-+++
T Consensus 108 ---~~~~~~~l~~~l~~~l~~~~~~-----~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 108 ---ESVDSKSLLKILTKFLDSENPE-----LQAIAVEGLCKLLLSGR 146 (298)
T ss_pred ---ccchHhHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHHhcCC
No 39
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=26.67 E-value=1.5e+02 Score=25.60 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=52.6
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh-hc-ccccHHHHHHHHHHHHhcCCCcchhhhhhcCC
Q psy10488 9 GPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTT-VQ-EDENLHDVLQTLISLMCDHPACLVPAFDMKQG 86 (462)
Q Consensus 9 g~RPs~eEI~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t-~~-Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~G 86 (462)
+++|+..+ +..++.++-.+..-++.++..|+++|..++.. .+ +++...++.+.+.....+ +..+..+...
T Consensus 15 ~~~~~~~~----~~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~--- 86 (140)
T PF05099_consen 15 KRLRQPQE----REALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQE-PIDLEELLRE--- 86 (140)
T ss_dssp TTT--STT----HHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHH-CCHHHHHHHH---
T ss_pred cccCCchH----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhc-cccHHHHHHH---
Confidence 44555555 56666666666777899999999999999944 33 466677777766655554 4444433332
Q ss_pred eeEeeecccC-CCchhHHhHHHHHHHHH
Q psy10488 87 VRTVFKLLTS-QSQLIRLQALKLLGFFL 113 (462)
Q Consensus 87 i~iffkLL~s-~sE~IRl~ALKlLG~fL 113 (462)
+.. -++.-|...|+.+-..-
T Consensus 87 -------l~~~~~~~~r~~ll~~l~~ia 107 (140)
T PF05099_consen 87 -------LRDSLSPEEREDLLRMLIAIA 107 (140)
T ss_dssp -------HCTS--HHHHHHHHHHHHHHC
T ss_pred -------HHHhhchHHHHHHHHHHHHHH
Confidence 222 13566776666665544
No 40
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=26.15 E-value=2.2e+02 Score=25.55 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHhhhc------ccccHHHHHHHHHHHHhcCCCcchhh--hhhc----C---------CeeEeeecccCC
Q psy10488 39 KEDELQSILNYLTTVQ------EDENLHDVLQTLISLMCDHPACLVPA--FDMK----Q---------GVRTVFKLLTSQ 97 (462)
Q Consensus 39 s~~El~AIlnfl~t~~------Ed~nl~DVL~mli~LLsE~P~~~~p~--fd~~----~---------Gi~iffkLL~s~ 97 (462)
+..+++.+.+.+.+.. ++.++++|-.++-+.+.+-|..++|. ++.. + .++-+++.|
T Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L--- 106 (174)
T smart00324 30 SKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYEEFIEAAKVEDETERLRALRELISLL--- 106 (174)
T ss_pred cHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---
Confidence 4577788888776643 45699999999999999999988864 4321 1 122222222
Q ss_pred CchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCc
Q psy10488 98 SQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESS 144 (462)
Q Consensus 98 sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~ 144 (462)
......-|+.|-.||..+..+....-|...++-..++=-|+.-+.+
T Consensus 107 -p~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~ 152 (174)
T smart00324 107 -PPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDG 152 (174)
T ss_pred -CHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcc
Confidence 2333344666666666665555556677777777777666655543
No 41
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=25.20 E-value=12 Score=29.43 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=20.5
Q ss_pred CeeEeeecccCCCchhHHhHHHHHHHH
Q psy10488 86 GVRTVFKLLTSQSQLIRLQALKLLGFF 112 (462)
Q Consensus 86 Gi~iffkLL~s~sE~IRl~ALKlLG~f 112 (462)
.+..++.+|..++..||..|.+-||++
T Consensus 32 ~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 32 AIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 355666777778888888888888876
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=24.77 E-value=79 Score=32.93 Aligned_cols=149 Identities=21% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccc
Q psy10488 43 LQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKY 122 (462)
Q Consensus 43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~ 122 (462)
+..+..|+. ..|..--+=+|..+..+...+ .+++. +.-.++|.+...++..||..||++|..+....+-+.
T Consensus 269 ~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~----~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~-- 339 (526)
T PF01602_consen 269 INPLIKLLS-SSDPNVRYIALDSLSQLAQSN----PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE-- 339 (526)
T ss_dssp HHHHHHHHT-SSSHHHHHHHHHHHHHHCCHC----HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH--
T ss_pred HHHHHHHhh-cccchhehhHHHHHHHhhccc----chhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccchhh--
Q ss_pred cccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHH
Q psy10488 123 DVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLL 202 (462)
Q Consensus 123 ~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m 202 (462)
+-+.|..|-...+...|..-.---++.++.+.. -.....+.++.+++....+.
T Consensus 340 -----------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~------------~~~~~~v~~l~~ll~~~~~~---- 392 (526)
T PF01602_consen 340 -----------ILDELLKYLSELSDPDFRRELIKAIGDLAEKFP------------PDAEWYVDTLLKLLEISGDY---- 392 (526)
T ss_dssp -----------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG------------SSHHHHHHHHHHHHHCTGGG----
T ss_pred -----------HHHHHHHHHHhccchhhhhhHHHHHHHHHhccC------------chHHHHHHHHHHhhhhcccc----
Q ss_pred HHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488 203 EVKKLFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 203 ~vk~~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
+...+...+..++.++++.++..++
T Consensus 393 -~~~~~~~~i~~ll~~~~~~~~~~l~ 417 (526)
T PF01602_consen 393 -VSNEIINVIRDLLSNNPELREKILK 417 (526)
T ss_dssp -CHCHHHHHHHHHHHHSTTTHHHHHH
T ss_pred -ccchHHHHHHHHhhcChhhhHHHHH
No 43
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=23.62 E-value=1.5e+02 Score=23.93 Aligned_cols=45 Identities=27% Similarity=0.445 Sum_probs=29.7
Q ss_pred CCcchHHHHHHHHHHHHhh-----hhheeecCCCchhhhhhccCCcchHHHHHHHHHh
Q psy10488 233 QGMPIEVAVSFLQRLVNMA-----DVLVFASSLNFAELEAEKNMSSGGILRQCLRLVC 285 (462)
Q Consensus 233 Q~l~ie~a~~fl~Rl~~lv-----Dvlvfas~lnFsEiEaEKnMssGGilRQcLRlvc 285 (462)
-||+.+.|...|.+.+.-+ ..+.+-++-+ +-|.||+||+.++-.+
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~~~~II~G~G--------~hS~~g~Lk~~V~~~L 53 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIRELRIITGKG--------NHSKGGVLKRAVRRWL 53 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHSEEEEE--ST--------CTCCTSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCEEEEEeccC--------CCCCCCcHHHHHHHHH
Confidence 3789999999998887543 4555555555 7788999887555433
No 44
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=23.00 E-value=3.1e+02 Score=25.79 Aligned_cols=74 Identities=27% Similarity=0.469 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHhh-hcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecc
Q psy10488 20 IRAYILLFLKQLMMLGPGVKEDEL----QSILNYLTT-VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLL 94 (462)
Q Consensus 20 IR~~LL~~lkqLi~~~~~is~~El----~AIlnfl~t-~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL 94 (462)
+-.+--.+++.|+.-=++.+++-. +|++.|+.. ..+.+.+.+++.-++.++.+|
T Consensus 81 ~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~--------------------- 139 (193)
T PF12612_consen 81 LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKEN--------------------- 139 (193)
T ss_pred cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---------------------
Confidence 344445566666644456665554 477888765 557778999999999999975
Q ss_pred cCCCchhHHhHHHHHHHHHhc
Q psy10488 95 TSQSQLIRLQALKLLGFFLSR 115 (462)
Q Consensus 95 ~s~sE~IRl~ALKlLG~fL~~ 115 (462)
..++-|=++.||.+.++|.+
T Consensus 140 -~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 140 -LRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred -CCCCCeeecHHHHHHHHHhC
Confidence 33455556788888888865
No 45
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=22.45 E-value=2.8e+02 Score=23.11 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCC
Q psy10488 18 LAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPA 75 (462)
Q Consensus 18 ~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~ 75 (462)
.++|.-|..=.| +.|-.++.|-.+.++++|..+. ++..+|+|.-|++.+-.+|.
T Consensus 3 ~~lrk~I~~~Fk---L~Gl~Lr~eA~~~l~~~l~~~~-~~e~e~~l~~Ii~~v~kq~L 56 (73)
T PF12213_consen 3 AKLRKKIVKAFK---LRGLSLRSEASKYLAEQLQSLS-EEEREDWLDKIIDAVQKQPL 56 (73)
T ss_dssp HHHHHHHHHHHH---HTT-EE-HHHHHHHHHHTTTS--TTTHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHhh---hccceecHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHhcCCC
Confidence 467777777777 6677788888999999998775 56899999999999998875
No 46
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=21.79 E-value=1.1e+02 Score=29.36 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCC--cchhhhh----hcCCeeEeeecccCCCchhHHhHHHHHHHH
Q psy10488 39 KEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPA--CLVPAFD----MKQGVRTVFKLLTSQSQLIRLQALKLLGFF 112 (462)
Q Consensus 39 s~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~--~~~p~fd----~~~Gi~iffkLL~s~sE~IRl~ALKlLG~f 112 (462)
.+.|.++|-++|...-.+ +-.|.=+ +..++.++|. +++-.-| ..=|+..+++|=..+.. .++|=|..+
T Consensus 13 ~~~D~hgIk~LL~ql~~~-~~~dl~~-LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svlnl~~~k~~----~~i~~l~~y 86 (194)
T PF13862_consen 13 NEIDFHGIKNLLQQLFLD-AEIDLSE-LADLIIEQNNVGSVVKQADGDEDDVYGFLSVLNLTQHKDH----PCIKQLRKY 86 (194)
T ss_pred ChhhHHHHHHHHHHhccc-cCcCHHH-HHHHHHcCCCCceEEEecCCCCCcceEEEEEEEccccccc----HHHHHHHHH
Confidence 456666666666654443 2233322 4455555544 4443323 22388888888555442 566666555
Q ss_pred HhcCCccccc----c----cc--CcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q psy10488 113 LSRSTHKRKY----D----VM--SPHNLYTLLAERLLQHESSLSFATYNVLYEILTE 159 (462)
Q Consensus 113 L~~~~~kRK~----~----~m--~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle 159 (462)
|..--.+... . .. ...++--+|+||+.-.|..+.-+.|+.|+|=+-.
T Consensus 87 l~~k~~~~~~~~~~~~l~~~l~~~~~~vGLlinER~iN~P~ql~ppl~~~L~~ei~~ 143 (194)
T PF13862_consen 87 LLSKCSKSADKEVKKKLEKLLSSSNKNVGLLINERFINIPPQLAPPLYKMLLEEIEW 143 (194)
T ss_pred HHHHhhhccChhHHHHHHHHHhccCCCeEEEEehhhhcCCHHHHHHHHHHHHHHHHH
Confidence 5432221111 1 11 2467777899999999999999999999985553
No 47
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=21.18 E-value=31 Score=31.98 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=32.7
Q ss_pred hhheeecCCCchhhhhhccC-CcchHHHHHHHHHhHHHhhhh
Q psy10488 252 DVLVFASSLNFAELEAEKNM-SSGGILRQCLRLVCTCAVRNC 292 (462)
Q Consensus 252 Dvlvfas~lnFsEiEaEKnM-ssGGilRQcLRlvc~~aVRnc 292 (462)
|-+.+.++.+++||+..+-. ..-..|.|.++.++...|||.
T Consensus 64 ~~l~IGA~vtl~~l~~~~~~~~~~p~L~~~~~~ias~~IRn~ 105 (171)
T PF00941_consen 64 GGLRIGAAVTLSELEESPLIQQYFPALAQAARRIASPQIRNR 105 (171)
T ss_dssp SEEEEETTSBHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHTT
T ss_pred cEEEECCCccHHHHhhcchhhhhHHHHHHHHHHhCCHhHeee
Confidence 67899999999999998322 223489999999999999993
No 48
>KOG4035|consensus
Probab=21.17 E-value=3.6e+02 Score=29.52 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=47.5
Q ss_pred HHHhhhcccccHHHHHHHHHHHHh-------cCCCcchhhhhhcC-CeeEe----eecccCCCchhHHhHHHHHHHHH
Q psy10488 48 NYLTTVQEDENLHDVLQTLISLMC-------DHPACLVPAFDMKQ-GVRTV----FKLLTSQSQLIRLQALKLLGFFL 113 (462)
Q Consensus 48 nfl~t~~Ed~nl~DVL~mli~LLs-------E~P~~~~p~fd~~~-Gi~if----fkLL~s~sE~IRl~ALKlLG~fL 113 (462)
.|+-..-|+.+.+|+++|.+.+.- ++|..++......+ .|.|| +-+|.|++-|.|++..|+|-.|+
T Consensus 233 ~~l~~i~e~~~~~~L~el~~~f~~~~n~q~~~a~~nvi~~~l~n~~~~kiFtE~Lll~LNR~~DPlril~hkvl~lil 310 (411)
T KOG4035|consen 233 RFLFNIAEDFHKEDLLELCTNFSLATNQQQGSAPLNVIQKILENPYSCKIFTEKLLLKLNREDDPLRILKHKVLYLIL 310 (411)
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHHHhhhcccccHHHHHHHhcCCchHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 566677888999999998887763 34444554444444 34443 34679999999999999888777
No 49
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=20.43 E-value=3.3e+02 Score=35.53 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=75.6
Q ss_pred hcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccc
Q psy10488 83 MKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHIS 162 (462)
Q Consensus 83 ~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iS 162 (462)
.-||+..+++||.+++..+|-.|.-.||-+-+..+..| ..+..++....|-+-|-...+..-...-.+|+.++.++-.
T Consensus 486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir--~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~ 563 (2102)
T PLN03200 486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR--ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA 563 (2102)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH--HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence 45899999999999999999999999999876433332 3333444444444444333333333444455555332111
Q ss_pred ccc---cc-ccCCCCC-----------------C----cccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhh
Q psy10488 163 QQI---LY-TRHPEPE-----------------S----HYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCN 217 (462)
Q Consensus 163 pq~---v~-~~h~~~d-----------------s----~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~ 217 (462)
.++ +. -.+..+. . .........+..+.+|+++..+. +|+.=..=|-.+|.
T Consensus 564 ~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~-----ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 564 ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEE-----TQEKAASVLADIFS 638 (2102)
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHH-----HHHHHHHHHHHHhc
Confidence 100 00 0000000 0 00011345677777777754332 45555555667788
Q ss_pred cChhhhhHHH
Q psy10488 218 NNRENRRTVL 227 (462)
Q Consensus 218 ~N~eNRrtlL 227 (462)
.+++++..+.
T Consensus 639 ~~~d~~~avv 648 (2102)
T PLN03200 639 SRQDLCESLA 648 (2102)
T ss_pred CChHHHHHHH
Confidence 8888766543
No 50
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=20.42 E-value=1.8e+02 Score=24.97 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=32.8
Q ss_pred eeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCc
Q psy10488 90 VFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESS 144 (462)
Q Consensus 90 ffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~ 144 (462)
+++.|..+..|||..||-.|.++..... ..+..-..++.++.+ .+.++++
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~-~L~d~Ds 57 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLS-QLKDEDS 57 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHH-HcCCCCc
Confidence 4567889999999999999999995444 233344445554443 4444433
No 51
>PF04627 ATP-synt_Eps: Mitochondrial ATP synthase epsilon chain; InterPro: IPR006721 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family constitutes the mitochondrial ATP synthase epsilon subunit, which is distinct from the bacterial epsilon subunit (the latter being homologous to the mitochondrial delta subunit, IPR001469 from INTERPRO). The mitochondrial epsilon subunit is located in the stalk region of the F1 complex, and acts as an inhibitor of the ATPase catalytic core. The epsilon subunit can assume two conformations, contracted and extended, where the latter inhibits ATP hydrolysis. The conformation of the epsilon subunit is determined by the direction of rotation of the gamma subunit, and possibly by the presence of ADP. The extended epsilon subunit is thought to become extended in the presence of ADP, thereby acting as a safety lock to prevent wasteful ATP hydrolysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OEH_R 3OE7_1 3OFN_R 3OEE_I 2HLD_I 3FKS_I 2WPD_I 3ZRY_I 2V7Q_I 1H8E_I ....
Probab=20.22 E-value=40 Score=26.39 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=11.0
Q ss_pred HhHHHhhhhHHhhhh
Q psy10488 284 VCTCAVRNCLECKER 298 (462)
Q Consensus 284 vc~~aVRncLecr~~ 298 (462)
+|+.+||+||.=-.+
T Consensus 17 iaA~~vR~aLKe~~r 31 (50)
T PF04627_consen 17 IAARAVRNALKEEFR 31 (50)
T ss_dssp HHHHHTTTTC-CTST
T ss_pred HHHHHHHHHhCchHH
Confidence 689999999975443
Done!