Query psy10488
Match_columns 462
No_of_seqs 79 out of 107
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 19:26:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3grl_A General vesicular trans 96.7 0.0052 1.8E-07 66.7 10.0 250 20-285 39-321 (651)
2 4hxt_A De novo protein OR329; 95.3 0.028 9.7E-07 49.0 6.2 190 19-229 17-211 (252)
3 4db6_A Armadillo repeat protei 95.3 0.018 6E-07 49.8 4.8 167 41-228 12-178 (210)
4 4hxt_A De novo protein OR329; 94.3 0.047 1.6E-06 47.6 4.9 166 42-228 3-168 (252)
5 4db8_A Armadillo-repeat protei 93.8 0.072 2.5E-06 47.1 5.2 132 78-228 89-220 (252)
6 4db8_A Armadillo-repeat protei 91.8 0.13 4.5E-06 45.4 4.0 156 53-228 23-178 (252)
7 4b8j_A Importin subunit alpha- 90.0 1.5 5.1E-05 43.5 10.1 165 43-228 246-412 (528)
8 1wa5_B Importin alpha subunit; 88.1 0.64 2.2E-05 46.4 6.0 130 80-228 252-381 (530)
9 1xqr_A HSPBP1 protein; armadil 88.0 0.89 3.1E-05 43.9 6.8 167 42-228 29-207 (296)
10 2jdq_A Importin alpha-1 subuni 87.7 0.99 3.4E-05 42.9 6.7 166 41-227 192-358 (450)
11 4db6_A Armadillo repeat protei 87.0 0.41 1.4E-05 41.1 3.4 131 79-228 6-136 (210)
12 4b8j_A Importin subunit alpha- 86.3 1.2 3.9E-05 44.3 6.6 95 41-138 74-169 (528)
13 1wa5_B Importin alpha subunit; 86.3 1.6 5.6E-05 43.4 7.8 129 81-228 169-297 (530)
14 2jdq_A Importin alpha-1 subuni 85.7 2.9 0.0001 39.6 8.8 126 83-227 147-273 (450)
15 3tpo_A Importin subunit alpha- 85.7 4 0.00014 41.2 10.3 158 52-229 261-419 (529)
16 2z6h_A Catenin beta-1, beta-ca 83.3 2.8 9.5E-05 43.3 8.0 194 19-233 29-227 (644)
17 3eg5_B Protein diaphanous homo 82.9 2 6.7E-05 43.3 6.6 183 41-248 109-304 (383)
18 3ul1_B Importin subunit alpha- 81.3 3 0.0001 42.1 7.3 157 53-230 243-401 (510)
19 1jdh_A Beta-catenin; beta-cate 80.8 1.6 5.3E-05 42.6 4.9 171 41-232 59-229 (529)
20 2bnx_A Diaphanous protein homo 79.3 2.2 7.4E-05 43.0 5.5 183 41-249 47-243 (386)
21 3tpo_A Importin subunit alpha- 77.4 2 6.7E-05 43.5 4.5 131 79-228 245-375 (529)
22 3ul1_B Importin subunit alpha- 72.4 15 0.00052 36.9 9.5 101 80-193 311-411 (510)
23 1jdh_A Beta-catenin; beta-cate 71.5 2.9 9.8E-05 40.7 3.8 170 38-229 14-184 (529)
24 2z6g_A B-catenin; FULL-length, 70.6 6.7 0.00023 42.1 6.8 56 81-138 230-285 (780)
25 1xm9_A Plakophilin 1; armadill 69.6 7.4 0.00025 38.8 6.4 169 42-229 3-183 (457)
26 3nmw_A APC variant protein; AR 69.1 12 0.0004 37.0 7.6 201 9-228 41-261 (354)
27 2z6g_A B-catenin; FULL-length, 67.4 3 0.0001 44.8 3.3 73 84-159 191-264 (780)
28 2f31_A Diaphanous protein homo 65.7 2.1 7.4E-05 39.8 1.5 166 41-234 43-224 (233)
29 3nmz_A APC variant protein; pr 64.6 11 0.00038 38.7 6.7 135 80-228 237-377 (458)
30 1xqr_A HSPBP1 protein; armadil 64.4 7.9 0.00027 37.3 5.3 82 76-159 200-284 (296)
31 2z6h_A Catenin beta-1, beta-ca 64.0 9 0.00031 39.5 5.9 170 38-229 11-181 (644)
32 3l6x_A Catenin delta-1; cateni 62.3 9.1 0.00031 40.8 5.8 169 43-233 310-490 (584)
33 3now_A UNC-45 protein, SD10334 49.0 21 0.00072 39.6 6.0 128 83-229 621-749 (810)
34 3nmz_A APC variant protein; pr 42.0 47 0.0016 34.1 6.9 132 79-228 280-419 (458)
35 3l6x_A Catenin delta-1; cateni 41.5 35 0.0012 36.4 6.1 119 35-156 42-161 (584)
36 1ho8_A Vacuolar ATP synthase s 40.7 13 0.00044 39.3 2.6 73 43-116 397-478 (480)
37 3o2t_A Symplekin; heat repeat, 40.3 24 0.00083 36.0 4.5 96 18-114 77-183 (386)
38 3grl_A General vesicular trans 39.9 1.6E+02 0.0055 32.2 10.9 196 19-227 181-404 (651)
39 1xm9_A Plakophilin 1; armadill 37.8 56 0.0019 32.4 6.6 99 80-195 326-431 (457)
40 2x19_B Importin-13; nuclear tr 37.7 3.2E+02 0.011 29.1 12.7 135 97-247 785-930 (963)
41 1wa5_C Importin alpha RE-expor 37.0 1.7E+02 0.0058 31.7 10.7 93 16-116 373-489 (960)
42 3gs3_A Symplekin, LD45768P; he 36.6 38 0.0013 32.6 4.9 95 18-114 67-173 (257)
43 1upk_A MO25 protein; transfera 35.3 7.9 0.00027 39.3 -0.0 55 59-113 181-237 (341)
44 3opb_A SWI5-dependent HO expre 34.1 36 0.0012 37.9 4.9 152 43-204 608-768 (778)
45 1k4u_P Phagocyte NADPH oxidase 33.4 29 0.001 24.3 2.6 17 3-19 2-18 (32)
46 3now_A UNC-45 protein, SD10334 32.7 49 0.0017 36.8 5.7 120 80-213 660-781 (810)
47 2v6z_M DNA polymerase epsilon 30.2 1E+02 0.0036 26.1 6.0 56 16-75 26-81 (99)
48 1qgr_A Protein (importin beta 29.3 76 0.0026 32.8 6.1 116 17-139 577-701 (876)
49 1ibr_B P95, importin beta-1 su 27.6 68 0.0023 30.1 5.0 62 55-118 378-441 (462)
50 3a9f_A Cytochrome C; alpha hel 25.7 52 0.0018 27.1 3.3 20 33-52 71-90 (92)
51 1u6g_C TIP120 protein, CAND1; 25.5 6.3E+02 0.022 27.9 12.8 74 42-117 130-207 (1230)
52 2zxy_A Cytochrome C552, cytoch 24.9 37 0.0013 25.0 2.2 18 36-53 69-86 (87)
53 3nmw_A APC variant protein; AR 24.7 50 0.0017 32.4 3.6 124 83-225 212-342 (354)
54 1ibr_B P95, importin beta-1 su 24.6 52 0.0018 30.9 3.6 30 87-116 130-161 (462)
55 2qk2_A LP04448P; mini spindles 24.1 1.1E+02 0.0039 27.0 5.6 89 61-156 34-125 (242)
56 1cch_A Cytochrome C551; electr 24.1 1.3E+02 0.0045 21.9 5.1 17 37-53 65-81 (82)
57 2exv_A Cytochrome C-551; alpha 23.9 1.9E+02 0.0064 21.1 6.0 17 37-53 65-81 (82)
58 2vgl_B AP-2 complex subunit be 23.0 3.8E+02 0.013 27.4 9.9 89 61-159 443-531 (591)
59 1ayg_A Cytochrome C-552; elect 22.7 47 0.0016 24.7 2.4 17 37-53 63-79 (80)
60 3tt9_A Plakophilin-2; cell adh 22.6 78 0.0027 29.6 4.4 173 90-291 13-226 (233)
61 2db0_A 253AA long hypothetical 22.4 34 0.0012 33.1 1.9 111 19-147 122-232 (253)
62 3ibv_A Exportin-T; karyopherin 22.2 2.8E+02 0.0095 31.0 9.3 29 86-114 41-72 (980)
63 3ph2_B Cytochrome C6; photosyn 22.0 47 0.0016 24.5 2.2 20 36-55 64-83 (86)
64 3gae_A Protein DOA1; UFD3, CDC 21.9 1.3E+02 0.0046 28.4 5.9 91 16-113 17-118 (253)
65 1gdv_A Cytochrome C6; RED ALGA 21.9 47 0.0016 24.4 2.2 19 37-55 64-82 (85)
66 1ycc_A Cytochrome C; electron 21.7 51 0.0017 25.9 2.5 20 36-55 88-108 (108)
67 2d0s_A Cytochrome C, cytochrom 21.6 49 0.0017 24.4 2.3 17 37-53 62-78 (79)
68 1f1f_A Cytochrome C6; heme, pr 21.0 50 0.0017 24.6 2.2 19 37-55 68-86 (89)
69 2ck3_I ATP synthase subunit ep 20.9 27 0.00093 26.4 0.7 16 284-299 17-32 (50)
70 2w9k_A Cytochrome C, cytochrom 20.8 49 0.0017 26.4 2.3 18 38-55 97-114 (114)
71 3dr0_A Cytochrome C6; photosyn 20.5 49 0.0017 24.6 2.1 20 36-55 70-89 (93)
72 2blf_B SORB, sulfite\:cytochro 20.4 61 0.0021 25.2 2.7 20 34-53 61-80 (81)
73 1wve_C 4-cresol dehydrogenase 20.3 60 0.002 24.4 2.5 20 37-56 57-76 (80)
No 1
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.70 E-value=0.0052 Score=66.71 Aligned_cols=250 Identities=18% Similarity=0.155 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhhh-cccccHHHHHHHHHHHHhcCCCc----------------chhh
Q psy10488 20 IRAYILLFLKQLMMLGPGV--KEDELQSILNYLTTV-QEDENLHDVLQTLISLMCDHPAC----------------LVPA 80 (462)
Q Consensus 20 IR~~LL~~lkqLi~~~~~i--s~~El~AIlnfl~t~-~Ed~nl~DVL~mli~LLsE~P~~----------------~~p~ 80 (462)
-|+.++.+-. ++++-.. ....+..+++-|.+- .|++-+.-||+.+..+++..+.. +...
T Consensus 39 RR~Av~~Lk~--~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 116 (651)
T 3grl_A 39 RRNAVRALKS--LSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116 (651)
T ss_dssp HHHHHHHHHH--TTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence 4677776655 3443222 256688888888775 55677888999998888865431 2233
Q ss_pred h-hhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q psy10488 81 F-DMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTE 159 (462)
Q Consensus 81 f-d~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle 159 (462)
| -+.+|++.++.||.+++..+|++|+|+|..++.+.+.+-+.-.......-+.|-+-|. .. .....|----+|.+
T Consensus 117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~--d~--rE~iRneallLL~~ 192 (651)
T 3grl_A 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA--DS--REVIRNDGVLLLQA 192 (651)
T ss_dssp HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG--CS--SHHHHHHHHHHHHH
T ss_pred HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh--Cc--hHHHHHHHHHHHHH
Confidence 3 3557999999999999999999999999999988887544333322122222222221 11 23334422222221
Q ss_pred ccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHhhcccCCcch--
Q psy10488 160 HISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPI-- 237 (462)
Q Consensus 160 ~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~~~wQ~l~i-- 237 (462)
+|.. +.+.. -.++.-.....+|.+|+.-.....-+-|-.. |.=+..|+..|+.|..-+.+...-+.+..
T Consensus 193 -Lt~~-----n~~iQ--klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DC-L~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL 263 (651)
T 3grl_A 193 -LTRS-----NGAIQ--KIVAFENAFERLLDIITEEGNSDGGIVVEDC-LILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263 (651)
T ss_dssp -HHTT-----CHHHH--HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHH-HHHHHHHHTTCHHHHHHHHHTTCGGGGGGGG
T ss_pred -HhcC-----CHHHH--HHHHHhccHHHHHHHHHhcCCCccchhHHHH-HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHh
Confidence 1100 00000 1122223556677777754443333333222 34456677788888888777655443210
Q ss_pred -----HHHHHHHHHHHH------hhhhheeecCCCchhhhhhccCCcchHHHHHHHHHh
Q psy10488 238 -----EVAVSFLQRLVN------MADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVC 285 (462)
Q Consensus 238 -----e~a~~fl~Rl~~------lvDvlvfas~lnFsEiEaEKnMssGGilRQcLRlvc 285 (462)
+.-|+ =||+.+ .+.+||=.++-.=+-...-+-|-.+|++++.+|+.-
T Consensus 264 ~~~~~~~~W~-~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~ 321 (651)
T 3grl_A 264 EVGDENSGWS-AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM 321 (651)
T ss_dssp CCCSCSSCCC-HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred CCCccccccH-HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 01111 233333 455565544321123345566777888888888754
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.30 E-value=0.028 Score=48.98 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHhcCC-C----CCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeec
Q psy10488 19 AIRAYILLFLKQLMMLGP-G----VKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKL 93 (462)
Q Consensus 19 ~IR~~LL~~lkqLi~~~~-~----is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkL 93 (462)
++|..-+..+..+..... . +..+=+..+++++... +..+....-..+.-++.+.......+-+.+|+..++++
T Consensus 17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 94 (252)
T 4hxt_A 17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 94 (252)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 455555555555443221 0 0113366677766542 22222222233334444333445556677999999999
Q ss_pred ccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCC
Q psy10488 94 LTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEP 173 (462)
Q Consensus 94 L~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ 173 (462)
|.++++.+|..|+..|+.+-...+..++ ..+ ..+....|-+-|.......-.....+|..+..+ ++..
T Consensus 95 l~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~-~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~--~~~~-------- 162 (252)
T 4hxt_A 95 LTSTDSEVQKEAARALANIASGPDEAIK-AIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEA-------- 162 (252)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHH-HHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHH--------
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHH-HHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHH--------
Confidence 9999999999999999999764443332 222 245566666544433323333344444443322 1111
Q ss_pred CCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHhh
Q psy10488 174 ESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQM 229 (462)
Q Consensus 174 ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~ 229 (462)
...+....++..+..++....+ ++|..-+.=+-.++..++++++.+.+.
T Consensus 163 --~~~~~~~~~i~~L~~ll~~~~~-----~v~~~a~~~L~~l~~~~~~~~~~l~~~ 211 (252)
T 4hxt_A 163 --IKAIVDAGGVEVLVKLLTSTDS-----EVQKEAARALANIASGPTSAIKAIVDA 211 (252)
T ss_dssp --HHHHHHTTHHHHHHHHTTCSCH-----HHHHHHHHHHHHHTTSBHHHHHHHHHT
T ss_pred --HHHHHHCcCHHHHHHHHCCCCH-----HHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 1234456788889999984332 467777888888999999999888653
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.27 E-value=0.018 Score=49.78 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccc
Q psy10488 41 DELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKR 120 (462)
Q Consensus 41 ~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kR 120 (462)
+-...+..++ ...|.+-..+++..+-.+ +.+.......+-..+|+..++++|.++++.+|..|+..||.+-...+..+
T Consensus 12 ~~~~~l~~LL-~s~~~~v~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 12 SELPQMVQQL-NSPDQQELQSALRKLSQI-ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp -CHHHHHHHT-TCSCHHHHHHHHHHHHHH-HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chhHHHHHHh-cCCCHHHHHHHHHHHHHH-HcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3344455555 334444445555555554 43344555566667999999999999999999999999999875554443
Q ss_pred cccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhH
Q psy10488 121 KYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSEL 200 (462)
Q Consensus 121 K~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~ 200 (462)
+ ..+ .......|-+-|-......-.....+|..+..+ ++.. ...+.....+..+.+++....
T Consensus 90 ~-~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~----------~~~~~~~~~i~~L~~ll~~~~---- 151 (210)
T 4db6_A 90 Q-AVI-DAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQ----------IQAVIDAGALPALVQLLSSPN---- 151 (210)
T ss_dssp H-HHH-HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHH----------HHHHHHTTHHHHHHHHTTCSC----
T ss_pred H-HHH-HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC--CHHH----------HHHHHHcCcHHHHHHHHcCCC----
Confidence 3 222 334445555544333323333444455544332 1111 112345668888888887532
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488 201 LLEVKKLFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 201 ~m~vk~~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
.+++..-+.=+-.++..+++|+..+.+
T Consensus 152 -~~v~~~a~~aL~~l~~~~~~~~~~~~~ 178 (210)
T 4db6_A 152 -EQILQEALWALSNIASGGNEQKQAVKE 178 (210)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 246777788888899999999987754
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.26 E-value=0.047 Score=47.57 Aligned_cols=166 Identities=17% Similarity=0.221 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCcccc
Q psy10488 42 ELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRK 121 (462)
Q Consensus 42 El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK 121 (462)
.+..++.++..-+ .+-...++..+-.+.++.| .....+-..+|+..++++|.+.++.+|..|+..|+.+-...+..++
T Consensus 3 ~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 3 DVEKLVKLLTSTD-SETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 5677788776543 4444556666666666543 3455556679999999999999999999999999999765443333
Q ss_pred ccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHH
Q psy10488 122 YDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELL 201 (462)
Q Consensus 122 ~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~ 201 (462)
. +...+....|.+-|.......-.....+|..+..+ ++. ....+.....+..+.+++....+
T Consensus 81 -~-~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~----------~~~~~~~~~~i~~L~~~l~~~~~---- 142 (252)
T 4hxt_A 81 -A-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDE----------AIKAIVDAGGVEVLVKLLTSTDS---- 142 (252)
T ss_dssp -H-HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHH----------HHHHHHHTTHHHHHHHHTTCSCH----
T ss_pred -H-HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHH----------HHHHHHHCCCHHHHHHHHcCCCH----
Confidence 2 22334455555544422222222233333332211 111 11224445678888888874432
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488 202 LEVKKLFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 202 m~vk~~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
+++..-+.=+-.|+..++++++.+.+
T Consensus 143 -~~~~~a~~~L~~l~~~~~~~~~~~~~ 168 (252)
T 4hxt_A 143 -EVQKEAARALANIASGPDEAIKAIVD 168 (252)
T ss_dssp -HHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35777777788888888888877754
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.76 E-value=0.072 Score=47.10 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=82.1
Q ss_pred hhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHH
Q psy10488 78 VPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEIL 157 (462)
Q Consensus 78 ~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEIL 157 (462)
...+-..||+..++++|.++++.+|-.|+..||.+-...+.+ . ..+...+....|-+-|.......-.....+|..+.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-I-QAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH-H-HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH-H-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 344556689999999999999999999999999996443322 1 22333345555555443222223333344444433
Q ss_pred hcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488 158 TEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 158 le~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
.+. +.. ...+....++..+..++... + .+++..-+.=|-.|+..+++++..+.+
T Consensus 167 ~~~--~~~----------~~~~~~~~~i~~L~~ll~~~-~----~~v~~~a~~~L~~l~~~~~~~~~~~~~ 220 (252)
T 4db8_A 167 SGG--NEQ----------IQAVIDAGALPALVQLLSSP-N----EQILQEALWALSNIASGGNEQKQAVKE 220 (252)
T ss_dssp TSC--HHH----------HHHHHHTTCHHHHHHGGGCS-S----HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cCC--hHH----------HHHHHHCCCHHHHHHHHCCC-C----HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 221 111 11233456778888888754 2 236777788888889899999988864
No 6
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.75 E-value=0.13 Score=45.44 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=96.9
Q ss_pred hcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHH
Q psy10488 53 VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYT 132 (462)
Q Consensus 53 ~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfs 132 (462)
..|.+-...++..+-.+++. .......+-..+|+..++++|.+.++.+|..|+..||.+-.+.+..++ ..+ ..+...
T Consensus 23 s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~i~-~~g~i~ 99 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ-AVI-DAGALP 99 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH-HHH-HTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH-HHH-HcCCHH
Confidence 34445556677777677776 233344555678999999999999999999999999999865544433 222 334555
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Q psy10488 133 LLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDL 212 (462)
Q Consensus 133 lLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DL 212 (462)
.|.+-|.......-.....+|..+..+.-.. ...+.....+..+.+++... +. +++..-+.=+
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~------------~~~~~~~~~i~~L~~lL~~~-~~----~v~~~a~~~L 162 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQ------------IQAVIDAGALPALVQLLSSP-NE----QILQEALWAL 162 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH------------HHHHHHTTHHHHHHHGGGCS-CH----HHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchH------------HHHHHHCCCHHHHHHHHhCC-CH----HHHHHHHHHH
Confidence 5555444322222333334444432111000 02244556788888888643 22 4577777778
Q ss_pred HHHhhcChhhhhHHHh
Q psy10488 213 TLLCNNNRENRRTVLQ 228 (462)
Q Consensus 213 l~L~~~N~eNRrtlLQ 228 (462)
-.|+..++++++.+.+
T Consensus 163 ~~l~~~~~~~~~~~~~ 178 (252)
T 4db8_A 163 SNIASGGNEQIQAVID 178 (252)
T ss_dssp HHHTTSCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH
Confidence 8888889888887764
No 7
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=89.98 E-value=1.5 Score=43.49 Aligned_cols=165 Identities=15% Similarity=0.184 Sum_probs=97.7
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccc
Q psy10488 43 LQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKY 122 (462)
Q Consensus 43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~ 122 (462)
+.+|+.++. ..+.+-..+++..+-. ++.++......+-..+++..++++|.+.++.+|..|+..||.+..+.+..++
T Consensus 246 l~~L~~lL~-~~~~~v~~~a~~aL~~-l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~- 322 (528)
T 4b8j_A 246 LPALARLIH-SNDEEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ- 322 (528)
T ss_dssp HHHHHHHTT-CCCHHHHHHHHHHHHH-HTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHH-HHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH-
Confidence 344444442 2233334444444333 4445555555555669999999999999999999999999999875543333
Q ss_pred cccCcchhHHHHHHHHhcC-CCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHH
Q psy10488 123 DVMSPHNLYTLLAERLLQH-ESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELL 201 (462)
Q Consensus 123 ~~m~~~~lfslLseRL~~~-~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~ 201 (462)
..+ ..++...|.+-|... ....-...+.+|-.+..+ ++.+. ..+....++..+.+++.... .
T Consensus 323 ~~~-~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~--~~~~~----------~~~~~~~~i~~L~~lL~~~~-~--- 385 (528)
T 4b8j_A 323 CII-DHQALPCLLSLLTQNLKKSIKKEACWTISNITAG--NKDQI----------QAVINAGIIGPLVNLLQTAE-F--- 385 (528)
T ss_dssp HHH-TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS--CHHHH----------HHHHHTTCHHHHHHHHHHSC-H---
T ss_pred HHH-HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC--CHHHH----------HHHHHCCCHHHHHHHHhcCC-H---
Confidence 222 355666666655533 333344445555554432 22211 11233466778888887542 2
Q ss_pred HHHHHHHHHHHHHHhhc-ChhhhhHHHh
Q psy10488 202 LEVKKLFLSDLTLLCNN-NRENRRTVLQ 228 (462)
Q Consensus 202 m~vk~~fL~DLl~L~~~-N~eNRrtlLQ 228 (462)
++|+..+.=|-.++.. +++++..+.+
T Consensus 386 -~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 386 -DIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp -HHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3566666666666666 7888888764
No 8
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=88.13 E-value=0.64 Score=46.38 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=77.7
Q ss_pred hhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q psy10488 80 AFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTE 159 (462)
Q Consensus 80 ~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle 159 (462)
..-..+++..++++|.++++.+|..|+..|+.+-...+..++ ..+ ...+...|.+-|.......-.....+|-.+..+
T Consensus 252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~-~~~-~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~ 329 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ-AVI-DVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329 (530)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHH-HHH-HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHH-HHH-hcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC
Confidence 444567899999999999999999999999999865443222 222 234555555544322212222333344433322
Q ss_pred ccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488 160 HISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 160 ~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
. +.+ ...+....++..+..++.... . .+|+.-+.=|-.++..++++++.+++
T Consensus 330 ~--~~~----------~~~~~~~~~l~~L~~lL~~~~-~----~vr~~A~~aL~~l~~~~~~~~~~~~~ 381 (530)
T 1wa5_B 330 N--DLQ----------TQVVINAGVLPALRLLLSSPK-E----NIKKEACWTISNITAGNTEQIQAVID 381 (530)
T ss_dssp C--HHH----------HHHHHHTTHHHHHHHHTTCSC-H----HHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred C--HHH----------HHHHHHcchHHHHHHHHcCCC-H----HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 111 112334568888888887552 2 35666666667777778888877764
No 9
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=88.04 E-value=0.89 Score=43.91 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=97.5
Q ss_pred HHHHHHHHHhh-----------hcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeee-cccCCCchhHHhHHHHH
Q psy10488 42 ELQSILNYLTT-----------VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFK-LLTSQSQLIRLQALKLL 109 (462)
Q Consensus 42 El~AIlnfl~t-----------~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffk-LL~s~sE~IRl~ALKlL 109 (462)
.++.++..|.. .-+.++-.+.+.-+-.++.+ . .....|.+.||+..+++ ||.++++.||-.|...|
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L 106 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-M-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-H-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-h-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 36666666654 22334566666666665553 2 24455677899999999 99999999999999999
Q ss_pred HHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHH
Q psy10488 110 GFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVA 189 (462)
Q Consensus 110 G~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa 189 (462)
|.+-...+.-|+ .+++. +....|-. |+...+.. ..--++++.+ .+++- +.++ ....|..-..+.++.
T Consensus 107 g~ia~~n~~~~~-~vv~~-g~l~~Ll~-LL~~~~~~-~v~~~A~~AL--snl~~------~~~~-~~~~~~~~ggi~~L~ 173 (296)
T 1xqr_A 107 GTCSQNVAAIQE-QVLGL-GALRKLLR-LLDRDACD-TVRVKALFAI--SCLVR------EQEA-GLLQFLRLDGFSVLM 173 (296)
T ss_dssp HHHHTTCHHHHH-HHHHT-THHHHHHH-HHHHCSCH-HHHHHHHHHH--HHHHT------TCHH-HHHHHHHTTHHHHHH
T ss_pred HHHHhCCHHHHH-HHHHC-CCHHHHHH-HHccCCCH-HHHHHHHHHH--HHHHc------CCcH-HHHHHHHCCCHHHHH
Confidence 998876665554 33333 33333333 33322121 2234455542 22110 0000 001233345778888
Q ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488 190 TLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 190 ~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
++|... +. ++|+.-..=+-.|+..++++++.+.+
T Consensus 174 ~lL~~~-d~----~v~~~A~~aLs~L~~~~~~~~~~vv~ 207 (296)
T 1xqr_A 174 RAMQQQ-VQ----KLKVKSAFLLQNLLVGHPEHKGTLCS 207 (296)
T ss_dssp HHHHSS-CH----HHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHcCC-CH----HHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 888743 22 35555555556667778999998853
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=87.66 E-value=0.99 Score=42.86 Aligned_cols=166 Identities=13% Similarity=0.137 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccc
Q psy10488 41 DELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKR 120 (462)
Q Consensus 41 ~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kR 120 (462)
+=+..|++++.. .|.+-..++.. .++-+++++......+-..+++..++++|.++++.+|..|+..||.+..+.+..+
T Consensus 192 ~~l~~L~~~l~~-~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 269 (450)
T 2jdq_A 192 PCLNVLSWLLFV-SDTDVLADACW-ALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269 (450)
T ss_dssp GGHHHHHHHTTC-CCHHHHHHHHH-HHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcc-CCHHHHHHHHH-HHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHH
Confidence 335555555532 22222233333 3344444443344455567899999999999999999999999999986554332
Q ss_pred cccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhH
Q psy10488 121 KYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSEL 200 (462)
Q Consensus 121 K~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~ 200 (462)
+ ..+. .++...|-+-|.......-...+.+|-.+..+ ++... ..+....++..+.+++....+
T Consensus 270 ~-~~~~-~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~--~~~~~----------~~~~~~~~l~~L~~~l~~~~~--- 332 (450)
T 2jdq_A 270 Q-VILN-CSALQSLLHLLSSPKESIKKEACWTISNITAG--NRAQI----------QTVIDANIFPALISILQTAEF--- 332 (450)
T ss_dssp H-HHHT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHHH----------HHHHHTTHHHHHHHHHHHSCH---
T ss_pred H-HHHH-CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHH----------HHHHHCCCHHHHHHHHhcCCH---
Confidence 2 2222 24555555444322222222333333332222 11110 112234677778888874322
Q ss_pred HHHHHHHHHHHHHHHhhc-ChhhhhHHH
Q psy10488 201 LLEVKKLFLSDLTLLCNN-NRENRRTVL 227 (462)
Q Consensus 201 ~m~vk~~fL~DLl~L~~~-N~eNRrtlL 227 (462)
++|+.-..=+-.++.. ++++++.++
T Consensus 333 --~v~~~a~~~L~~l~~~~~~~~~~~l~ 358 (450)
T 2jdq_A 333 --RTRKEAAWAITNATSGGSAEQIKYLV 358 (450)
T ss_dssp --HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3566655555555554 666776664
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=87.04 E-value=0.41 Score=41.12 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=78.6
Q ss_pred hhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHh
Q psy10488 79 PAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILT 158 (462)
Q Consensus 79 p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILl 158 (462)
|-++..++...+.+||.++++.+|..|+..|+.+-...+..++ .. ........|.+-|.......-.....+|..+..
T Consensus 6 ~~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~-~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQ-AV-IDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp -------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHH-HH-HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ccccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHH-HH-HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 3445567888999999999999999999999998755544433 22 233555666655543333333333444444332
Q ss_pred cccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488 159 EHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 159 e~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
+. +.. ...+.....+..+.+++...+ ..+|..-..=+-.++..++++++.+++
T Consensus 84 ~~--~~~----------~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (210)
T 4db6_A 84 GG--NEQ----------IQAVIDAGALPALVQLLSSPN-----EQILQEALWALSNIASGGNEQIQAVID 136 (210)
T ss_dssp SC--HHH----------HHHHHHTTCHHHHHHHTTCSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CC--cHH----------HHHHHHCCCHHHHHHHHcCCc-----HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 21 111 112334567788888887553 235666677777888889988887763
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=86.33 E-value=1.2 Score=44.30 Aligned_cols=95 Identities=13% Similarity=0.152 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCC-chhHHhHHHHHHHHHhcCCcc
Q psy10488 41 DELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQS-QLIRLQALKLLGFFLSRSTHK 119 (462)
Q Consensus 41 ~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~s-E~IRl~ALKlLG~fL~~~~~k 119 (462)
.++..|+..+. ..+.+--...+..+-.+++..+......+-..+++..++++|.+.+ +.+|..|+..||.+-...+..
T Consensus 74 ~~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 74 ESLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp -CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34788888884 3344455667777888888665455666667799999999999987 999999999999998765544
Q ss_pred ccccccCcchhHHHHHHHH
Q psy10488 120 RKYDVMSPHNLYTLLAERL 138 (462)
Q Consensus 120 RK~~~m~~~~lfslLseRL 138 (462)
++ ..+. .+....|.+-|
T Consensus 153 ~~-~~~~-~g~i~~L~~lL 169 (528)
T 4b8j_A 153 TK-VVID-HGAVPIFVKLL 169 (528)
T ss_dssp HH-HHHH-TTHHHHHHHHT
T ss_pred HH-HHHh-CCcHHHHHHHh
Confidence 44 2222 24444444433
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=86.30 E-value=1.6 Score=43.44 Aligned_cols=129 Identities=19% Similarity=0.125 Sum_probs=77.2
Q ss_pred hhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcc
Q psy10488 81 FDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEH 160 (462)
Q Consensus 81 fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~ 160 (462)
+-..+|+..++++|.++++.+|-.|+..||.+-...+..|+. +...+....|.+-|.......-.....+|..+..+.
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~--~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY--VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH--HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH--HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 334689999999999999999999999999998655444432 222344555554443322222233344444443321
Q ss_pred cccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488 161 ISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 161 iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
.|. . .......++..+.+++...+ . +++...+.=|-.|+..++++++.++.
T Consensus 247 -~~~----------~-~~~~~~~~l~~L~~lL~~~d-~----~v~~~a~~~L~~L~~~~~~~~~~~~~ 297 (530)
T 1wa5_B 247 -KPQ----------P-DWSVVSQALPTLAKLIYSMD-T----ETLVDACWAISYLSDGPQEAIQAVID 297 (530)
T ss_dssp -SSC----------C-CHHHHGGGHHHHHHHTTCCC-H----HHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred -CCC----------C-cHHHHHhHHHHHHHHHcCCC-H----HHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 011 0 11223567888888886433 2 35666666677777777777766654
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=85.73 E-value=2.9 Score=39.61 Aligned_cols=126 Identities=8% Similarity=0.066 Sum_probs=69.3
Q ss_pred hcCCeeEeeecccC-CCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhccc
Q psy10488 83 MKQGVRTVFKLLTS-QSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHI 161 (462)
Q Consensus 83 ~~~Gi~iffkLL~s-~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~i 161 (462)
..+++..++++|.+ .+..+|..|+..||.+.....++.+...+ ..+...|.+-|.......-.....+|..+..+ .
T Consensus 147 ~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~-~ 223 (450)
T 2jdq_A 147 DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVSDTDVLADACWALSYLSDG-P 223 (450)
T ss_dssp HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS-S
T ss_pred HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC-C
Confidence 45889999999996 78999999999999998766344333333 55666666554322211112222233322111 0
Q ss_pred ccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHH
Q psy10488 162 SQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVL 227 (462)
Q Consensus 162 Spq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlL 227 (462)
.+. ...+....++..+..++.. ++. +++..-+.=+-.++..+++.++.++
T Consensus 224 ~~~-----------~~~~~~~~~i~~L~~ll~~-~~~----~v~~~a~~~L~~l~~~~~~~~~~~~ 273 (450)
T 2jdq_A 224 NDK-----------IQAVIDAGVCRRLVELLMH-NDY----KVVSPALRAVGNIVTGDDIQTQVIL 273 (450)
T ss_dssp HHH-----------HHHHHHTTTHHHHHHHTTC-SCH----HHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cHH-----------HHHHHHcCcHHHHHHHHCC-Cch----hHHHHHHHHHHHHhhCChHHHHHHH
Confidence 000 0112223456666667652 222 3455556666666666666555544
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=85.71 E-value=4 Score=41.20 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=91.8
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhH
Q psy10488 52 TVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLY 131 (462)
Q Consensus 52 t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lf 131 (462)
...+.+-..|+..-+ .-+++++.....++...|++..+++||.++++.++..|+..||.+..+....+. ..+ ..+..
T Consensus 261 ~~~~~~v~~~a~~aL-~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~-~i~-~~g~l 337 (529)
T 3tpo_A 261 HHNDPEVLADSCWAI-SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ-KVI-DAGAL 337 (529)
T ss_dssp TSSCHHHHHHHHHHH-HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHH-HTTGG
T ss_pred cCCcHHHHHHHHHHH-HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH-HHh-hcccH
Confidence 344555555655444 445556777777777889999999999999999999999999999865543332 222 22233
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHH
Q psy10488 132 TLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSD 211 (462)
Q Consensus 132 slLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~D 211 (462)
..|..-|.......-...+.+|-.+..+ ++.+. ..+..-.++..+..++..... ++|+.-..=
T Consensus 338 ~~L~~LL~~~~~~i~~~a~~aL~nl~~~--~~~~~----------~~v~~~g~i~~Lv~lL~~~~~-----~v~~~A~~a 400 (529)
T 3tpo_A 338 AVFPSLLTNPKTNIQKEATWTMSNITAG--RQDQI----------QQVVNHGLVPFLVGVLSKADF-----KTQKAAAWA 400 (529)
T ss_dssp GGHHHHTTCSSHHHHHHHHHHHHHHHTS--CHHHH----------HHHHHTTHHHHHHHHHHSSCH-----HHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcc--cHHHH----------HHHHhcCcHHHHHHHhcCCCH-----HHHHHHHHH
Confidence 3333323322223334455566665544 22211 112234567777777764432 245444444
Q ss_pred HHHHhh-cChhhhhHHHhh
Q psy10488 212 LTLLCN-NNRENRRTVLQM 229 (462)
Q Consensus 212 Ll~L~~-~N~eNRrtlLQ~ 229 (462)
|..++. .++++++.|.+.
T Consensus 401 L~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 401 ITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHC
Confidence 444443 467788777654
No 16
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=83.29 E-value=2.8 Score=43.29 Aligned_cols=194 Identities=11% Similarity=0.053 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHhcCCC----C-CHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeec
Q psy10488 19 AIRAYILLFLKQLMMLGPG----V-KEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKL 93 (462)
Q Consensus 19 ~IR~~LL~~lkqLi~~~~~----i-s~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkL 93 (462)
.+|..-+..+..|-..... + ..+=+.+|+..|....+.+-...+...+- .|+.++. ....+-..+|+..++++
T Consensus 29 ~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~-~Ls~~~~-~~~~i~~~g~i~~Lv~l 106 (644)
T 2z6h_A 29 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH-NLSHHRE-GLLAIFKSGGIPALVKM 106 (644)
T ss_dssp HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHTTSHH-HHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHH-HHhcChh-hHHHHHHcCCHHHHHHH
Confidence 4555556666655432211 0 12446777777765433333344444433 5565544 33444455899999999
Q ss_pred ccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCC
Q psy10488 94 LTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEP 173 (462)
Q Consensus 94 L~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ 173 (462)
|.++++.+|..|+..|+.+.......++ .+........|-+-|......+......+|..+-.+. +..
T Consensus 107 L~~~~~~v~~~A~~aL~nL~~~~~~~~~--~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~--~~~-------- 174 (644)
T 2z6h_A 107 LGSPVDSVLFYAITTLHNLLLHQEGAKM--AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN--QES-------- 174 (644)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSTTHHH--HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC--HHH--------
T ss_pred HhCCCHHHHHHHHHHHHHHHhCcchhHH--HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC--cHH--------
Confidence 9999999999999999999876543332 2222344445544443222111111122444443321 110
Q ss_pred CCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHhhcccC
Q psy10488 174 ESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233 (462)
Q Consensus 174 ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~~~wQ 233 (462)
...+.....+..+.++++..... . ++...+.= +.-+..+++||..+.+..+++
T Consensus 175 --~~~i~~~g~v~~Lv~lL~~~~~~-~---~~~~a~~~-L~nLs~~~~~~~~l~~~g~l~ 227 (644)
T 2z6h_A 175 --KLIILASGGPQALVNIMRTYTYE-K---LLWTTSRV-LKVLSVCSSNKPAIVEAGGMQ 227 (644)
T ss_dssp --HHHHHHTTHHHHHHHHHTTCCCH-H---HHHHHHHH-HHHHTTCTTHHHHHHHTTHHH
T ss_pred --HHHHHHcCChHHHHHHHHcCChH-H---HHHHHHHH-HHHHhcCcccHHHHHHCCCHH
Confidence 01233335567777777765432 1 22222222 333345778888877654443
No 17
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=82.94 E-value=2 Score=43.34 Aligned_cols=183 Identities=13% Similarity=0.204 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhhhcccc---------cHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHH
Q psy10488 41 DELQSILNYLTTVQEDE---------NLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGF 111 (462)
Q Consensus 41 ~El~AIlnfl~t~~Ed~---------nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~ 111 (462)
+=+.+|++.|..++... .++-..-..++++..+..++-.+++..+++..+...|.+++..+|..|+|+|+.
T Consensus 109 ~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~ 188 (383)
T 3eg5_B 109 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA 188 (383)
T ss_dssp HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 44788999998765222 233333345567777777888899999999999999999999999999999998
Q ss_pred HHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHH
Q psy10488 112 FLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATL 191 (462)
Q Consensus 112 fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~L 191 (462)
+-.....+ +.+..+-+-+..+...-...-|..+.+.|-.. ....+ -=..+..|=.+
T Consensus 189 lc~~~~~~---------gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~--------------~~~e~-~~~~m~lIN~l 244 (383)
T 3eg5_B 189 LCILPQPE---------DMNERVLEAMTERAEMDEVERFQPLLDGLKSG--------------TSIAL-KVGCLQLINAL 244 (383)
T ss_dssp HHTCCSST---------THHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT--------------SCHHH-HHHHHHHHHHH
T ss_pred HHhCcCcC---------CcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc--------------CcHHH-HHHHHHHHHHH
Confidence 66433211 11222211111110000001122233322110 01100 01357888889
Q ss_pred HhcCcchhHHHHHHHHH----HHHHHHHhhcChhhhhHHHhhcccCCcchHHHHHHHHHHH
Q psy10488 192 IRQSKQSELLLEVKKLF----LSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLV 248 (462)
Q Consensus 192 L~qs~~s~~~m~vk~~f----L~DLl~L~~~N~eNRrtlLQ~~~wQ~l~ie~a~~fl~Rl~ 248 (462)
+.++++-..++.+|..| |.+++.-+.. -+|-.-.-|+..|....-|+--.+..|+-
T Consensus 245 i~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~-~~~~~L~~Qi~~fe~~~~eD~~el~~r~~ 304 (383)
T 3eg5_B 245 ITPAEELDFRVHIRSELMRLGLHQVLQELRE-IENEDMKVQLCVFDEQGDEDFFDLKGRLD 304 (383)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCChHHHHHHHhc-CCChhHHHHHHHHHHHHHHhHHHHHhhcc
Confidence 99999988899998665 3455555554 34667778999999998899889998873
No 18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=81.27 E-value=3 Score=42.10 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=85.6
Q ss_pred hcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHH
Q psy10488 53 VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYT 132 (462)
Q Consensus 53 ~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfs 132 (462)
..+.+-..++.. .++-|++++......+...|++..+++||.+.++.++..|+..||.+..+....++ ..+. .+...
T Consensus 243 ~~~~~v~~~A~~-aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~-~i~~-~g~l~ 319 (510)
T 3ul1_B 243 HNDPEVLADSCW-AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ-KVID-AGALA 319 (510)
T ss_dssp CSCHHHHHHHHH-HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH-HHHH-TTGGG
T ss_pred cCCHHHHHHHHH-HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHH-HHhh-ccchH
Confidence 344444455544 34445666766777777889999999999999999999999999998765443322 1111 11111
Q ss_pred HHHHHHhcCCC-cchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHH
Q psy10488 133 LLAERLLQHES-SLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSD 211 (462)
Q Consensus 133 lLseRL~~~~~-~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~D 211 (462)
.|.. |+.++. ..-...+.+|-.+..+ ++.+. ..+..-.++..+..++...+. ++|+.-..=
T Consensus 320 ~L~~-LL~~~~~~v~~~A~~aL~nl~a~--~~~~~----------~~v~~~g~i~~Lv~lL~~~~~-----~v~~~Aa~a 381 (510)
T 3ul1_B 320 VFPS-LLTNPKTNIQKEATWTMSNITAG--RQDQI----------QQVVNHGLVPFLVGVLSKADF-----KTQKEAAWA 381 (510)
T ss_dssp GCC--CTTCSSHHHHHHHHHHHHHHTTS--CHHHH----------HHHHHTTHHHHHHHHHHSSCH-----HHHHHHHHH
T ss_pred HHHH-HhcCCCHHHHHHHHHHHHHHHcC--cHHHH----------HHHHhcCCHHHHHHHHcCCCH-----HHHHHHHHH
Confidence 1111 222222 2223334444444332 11110 122234577777788775432 345443333
Q ss_pred HHHHhh-cChhhhhHHHhhc
Q psy10488 212 LTLLCN-NNRENRRTVLQMS 230 (462)
Q Consensus 212 Ll~L~~-~N~eNRrtlLQ~~ 230 (462)
|..++. .+++++..|.+..
T Consensus 382 L~Nl~~~~~~~~~~~L~~~g 401 (510)
T 3ul1_B 382 ITNYTSGGTVEQIVYLVHCG 401 (510)
T ss_dssp HHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHccCCHHHHHHHHHCC
Confidence 333433 4677777776543
No 19
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=80.81 E-value=1.6 Score=42.58 Aligned_cols=171 Identities=12% Similarity=0.075 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccc
Q psy10488 41 DELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKR 120 (462)
Q Consensus 41 ~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kR 120 (462)
+=+..++..+....+.+-...+...+-. ++.++. ....+-..||+..++++|.++++.+|..|+..|+.+....+..+
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~-ls~~~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHN-LSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HTTSHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHH-HHcCch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 3455556555543333333334443333 344333 33444456999999999999999999999999999887654433
Q ss_pred cccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhH
Q psy10488 121 KYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSEL 200 (462)
Q Consensus 121 K~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~ 200 (462)
+ .+...+....|-+-|.......-.....+|..+-.++ +. ....+.....+..+.++++...+. .
T Consensus 137 ~--~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~--~~----------~~~~i~~~~~i~~L~~ll~~~~~~-~ 201 (529)
T 1jdh_A 137 M--AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN--QE----------SKLIILASGGPQALVNIMRTYTYE-K 201 (529)
T ss_dssp H--HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC--HH----------HHHHHHHTTHHHHHHHHHHHCCCH-H
T ss_pred H--HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC--HH----------HHHHHHHCCCHHHHHHHHHhCChH-H
Confidence 2 2222334444444333211111111222444333221 11 001122334566777777755432 1
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhhHHHhhccc
Q psy10488 201 LLEVKKLFLSDLTLLCNNNRENRRTVLQMSVW 232 (462)
Q Consensus 201 ~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~~~w 232 (462)
++.-...++.-+..+++||..+.+....
T Consensus 202 ----~~~~a~~~L~~l~~~~~~~~~~~~~g~~ 229 (529)
T 1jdh_A 202 ----LLWTTSRVLKVLSVCSSNKPAIVEAGGM 229 (529)
T ss_dssp ----HHHHHHHHHHHHTTSTTHHHHHHHTTHH
T ss_pred ----HHHHHHHHHHHHhcCcccHHHHHHCCCH
Confidence 1111233344445678888887654433
No 20
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=79.27 E-value=2.2 Score=42.98 Aligned_cols=183 Identities=15% Similarity=0.252 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhhhc----------ccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHH
Q psy10488 41 DELQSILNYLTTVQ----------EDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLG 110 (462)
Q Consensus 41 ~El~AIlnfl~t~~----------Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG 110 (462)
+=+.+|+++|.+.+ |.+..++++ ..++++..++.++-.++...+++..+...|.+++-.+|..|+++|+
T Consensus 47 ~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l-~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 47 EGLASLLDILKRLHDEKEETSGNYDSRNQHEII-RCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHH-HHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHH-HHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 44778888888764 334456666 4557777777788888999999999999999999999999999999
Q ss_pred HHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHH
Q psy10488 111 FFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVAT 190 (462)
Q Consensus 111 ~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~ 190 (462)
. +|..+... + + -..+...+.+.-- +.. .. =|+.+.++.. .+ .+..+ -=..|..|=.
T Consensus 126 a-lc~~~~~~-G--~-~~~VL~Al~~~~~-~~e---~~----RF~~lv~~l~------~~----~~~e~-~~a~m~lIN~ 181 (386)
T 2bnx_A 126 A-LCILPQPE-D--M-NERVLEAMTERAE-MDE---VE----RFQPLLDGLK------SG----TSIAL-KVGCLQLINA 181 (386)
T ss_dssp H-HHTCCSST-T--H-HHHHHHHHHHHHH-HHT---SC----TTHHHHHHTS------TT----SCHHH-HHHHHHHHHH
T ss_pred H-HHcCCCCC-C--h-HHHHHHHHHHHHH-hCc---hh----hHHHHHHHHH------cC----ChHHH-HHHHHHHHHH
Confidence 7 66555311 0 0 1112222221100 000 00 1222333221 01 11110 1236788889
Q ss_pred HHhcCcchhHHHHHHHHHH----HHHHHHhhcChhhhhHHHhhcccCCcchHHHHHHHHHHHH
Q psy10488 191 LIRQSKQSELLLEVKKLFL----SDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRLVN 249 (462)
Q Consensus 191 LL~qs~~s~~~m~vk~~fL----~DLl~L~~~N~eNRrtlLQ~~~wQ~l~ie~a~~fl~Rl~~ 249 (462)
++.++++-..++.+|..|. .+++.-+.. -+|-.---|+..|....-++--.+..|+-.
T Consensus 182 lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~-~~~~~L~~Qi~~fe~~~~eD~~el~~r~~~ 243 (386)
T 2bnx_A 182 LITPAEELDFRVHIRSELMRLGLHQVLQELRE-IENEDMKVQLCVFDEQGDEDFFDLKGRLDD 243 (386)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCChHHHHHHHhc-cCChhHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999998874 355555543 346778889999999988999999999643
No 21
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=77.40 E-value=2 Score=43.48 Aligned_cols=131 Identities=13% Similarity=0.185 Sum_probs=78.0
Q ss_pred hhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHh
Q psy10488 79 PAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILT 158 (462)
Q Consensus 79 p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILl 158 (462)
++....+++.++.+||.+.++.++..|...|+++...... ++ ..+....+...|-+-|.......-.+...+|..+..
T Consensus 245 ~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~-~~-~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 322 (529)
T 3tpo_A 245 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE-RI-EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 322 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH-HH-HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh-hH-HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHc
Confidence 3333345677889999999999999999999998864433 33 223334455555554443332333334445555544
Q ss_pred cccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488 159 EHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 159 e~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
+. +.+ ...+.....+.++..++...++ ++|+.-..=|-.++..+++++..+.+
T Consensus 323 ~~--~~~----------~~~i~~~g~l~~L~~LL~~~~~-----~i~~~a~~aL~nl~~~~~~~~~~v~~ 375 (529)
T 3tpo_A 323 GT--DEQ----------TQKVIDAGALAVFPSLLTNPKT-----NIQKEATWTMSNITAGRQDQIQQVVN 375 (529)
T ss_dssp SC--HHH----------HHHHHHTTGGGGHHHHTTCSSH-----HHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cc--hHH----------HHHHhhcccHHHHHHHHcCCCH-----HHHHHHHHHHHHHhcccHHHHHHHHh
Confidence 31 111 1123345566777788875443 25555555566677788888877754
No 22
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=72.39 E-value=15 Score=36.93 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=62.8
Q ss_pred hhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q psy10488 80 AFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTE 159 (462)
Q Consensus 80 ~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle 159 (462)
.+-..||+..+.+||.++++.||-.|...|+.+..+.+..++ .+...++...|-+-|..-.+..-....-+|..+..+
T Consensus 311 ~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~--~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ--QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH--HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 344568999999999999999999999999999876554443 333456777776666543333333334455554444
Q ss_pred ccccccccccCCCCCCcccccCchHHHHHHHHHh
Q psy10488 160 HISQQILYTRHPEPESHYRLENPMILKVVATLIR 193 (462)
Q Consensus 160 ~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~ 193 (462)
+ ++++. ..+....+++.+..+|.
T Consensus 389 ~-~~~~~----------~~L~~~g~i~~L~~LL~ 411 (510)
T 3ul1_B 389 G-TVEQI----------VYLVHCGIIEPLMNLLS 411 (510)
T ss_dssp C-CHHHH----------HHHHHTTCHHHHHHGGG
T ss_pred C-CHHHH----------HHHHHCCCHHHHHHHhc
Confidence 3 23221 12334556777777775
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=71.50 E-value=2.9 Score=40.73 Aligned_cols=170 Identities=12% Similarity=0.110 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCC-CchhHHhHHHHHHHHHhcC
Q psy10488 38 VKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQ-SQLIRLQALKLLGFFLSRS 116 (462)
Q Consensus 38 is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~-sE~IRl~ALKlLG~fL~~~ 116 (462)
+..+-+..++.++. +++..+.+.--..+.-++.++..-...++..+++..++++|.+. +..+|..|.+.|+.+-. .
T Consensus 14 ~~~~~i~~Lv~lL~--~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~ 90 (529)
T 1jdh_A 14 LATRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H 90 (529)
T ss_dssp ---CHHHHHHHHHT--CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S
T ss_pred hhHhhHHHHHHHhC--CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-C
Confidence 34455677777665 34444433333344444444332223334446788888888754 78899999999999643 2
Q ss_pred CccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCc
Q psy10488 117 THKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSK 196 (462)
Q Consensus 117 ~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~ 196 (462)
+ +-+ ..+...+....|.+-|.......-.....+|..+....-..+ ..+.....+..+.+++....
T Consensus 91 ~-~~~-~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~------------~~i~~~g~i~~L~~ll~~~~ 156 (529)
T 1jdh_A 91 R-EGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK------------MAVRLAGGLQKMVALLNKTN 156 (529)
T ss_dssp H-HHH-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH------------HHHHHHTHHHHHHHGGGCCC
T ss_pred c-hhH-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH------------HHHHHcCCHHHHHHHHhcCC
Confidence 2 222 222233555555555543332333445555666554311111 12334556777777776432
Q ss_pred chhHHHHHHHHHHHHHHHHhhcChhhhhHHHhh
Q psy10488 197 QSELLLEVKKLFLSDLTLLCNNNRENRRTVLQM 229 (462)
Q Consensus 197 ~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~ 229 (462)
.+++.....=+-.++..|++|+..+.+.
T Consensus 157 -----~~~~~~~~~~L~~la~~~~~~~~~i~~~ 184 (529)
T 1jdh_A 157 -----VKFLAITTDCLQILAYGNQESKLIILAS 184 (529)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 1234433334445666778888777654
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=70.63 E-value=6.7 Score=42.14 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=40.1
Q ss_pred hhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHH
Q psy10488 81 FDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERL 138 (462)
Q Consensus 81 fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL 138 (462)
+-..+|+..++++|++.++.+|..|+..|+.+-...+..++ .+........|-+-|
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~--~v~~~g~v~~Lv~lL 285 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM--AVRLAGGLQKMVALL 285 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH--HHHHTTHHHHHHHGG
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH--HHHHcCCHHHHHHHH
Confidence 33458999999999999999999999999999876554443 222233444444433
No 25
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=69.57 E-value=7.4 Score=38.83 Aligned_cols=169 Identities=16% Similarity=0.106 Sum_probs=96.7
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCcccc
Q psy10488 42 ELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRK 121 (462)
Q Consensus 42 El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK 121 (462)
++..++.+|..- +.+--..+...+-. ++.+....-..+-..||+..++++|.++++.++..|...|+.+....+. -|
T Consensus 3 ~l~~lv~~L~s~-~~~~q~~A~~~L~~-l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~-~k 79 (457)
T 1xm9_A 3 TIPKAVQYLSSQ-DEKYQAIGAYYIQH-TCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT-NK 79 (457)
T ss_dssp CHHHHHHHHHSS-CTHHHHHHHHHHHH-HTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH-HH
T ss_pred CHHHHHHHHCCC-CHHHHHHHHHHHHH-HHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH-HH
Confidence 467777777653 33334455555444 4444444444566789999999999999999999999999999875333 33
Q ss_pred ccccCcchhHHHHHHHHh-cCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhc------
Q psy10488 122 YDVMSPHNLYTLLAERLL-QHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQ------ 194 (462)
Q Consensus 122 ~~~m~~~~lfslLseRL~-~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~q------ 194 (462)
...+ ..+....|-+-|. ..........-.+|+.+-.+ ++ ....+.. ..+..+.++|..
T Consensus 80 ~~i~-~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~---~~----------~~~~i~~-g~i~~Lv~ll~~~~s~~~ 144 (457)
T 1xm9_A 80 LETR-RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST---DE----------LKEELIA-DALPVLADRVIIPFSGWC 144 (457)
T ss_dssp HHHH-HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS---SS----------THHHHHH-HHHHHHHHHTTHHHHTCC
T ss_pred HHHH-HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC---HH----------hHHHHHh-ccHHHHHHHHhccccccc
Confidence 2333 3344555555554 22333444445556554432 11 1122444 778888888831
Q ss_pred -Ccchh----HHHHHHHHHHHHHHHHhhcChhhhhHHHhh
Q psy10488 195 -SKQSE----LLLEVKKLFLSDLTLLCNNNRENRRTVLQM 229 (462)
Q Consensus 195 -s~~s~----~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~ 229 (462)
++... ...++.+.-..=|-.|+.+ ++||..+.+.
T Consensus 145 ~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~ 183 (457)
T 1xm9_A 145 DGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNY 183 (457)
T ss_dssp ---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTS
T ss_pred cCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHc
Confidence 11100 0122333444445566766 8899888654
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=69.07 E-value=12 Score=36.97 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=110.3
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHhhhcc---------cccHHHHHHHHHHHHhcCC
Q psy10488 9 GPRPAQKDILAIRAYILLFLKQLMMLGPG-----VKEDELQSILNYLTTVQE---------DENLHDVLQTLISLMCDHP 74 (462)
Q Consensus 9 g~RPs~eEI~~IR~~LL~~lkqLi~~~~~-----is~~El~AIlnfl~t~~E---------d~nl~DVL~mli~LLsE~P 74 (462)
+|-|.++++.. .+-.+.+ ++-... +..+=+++|+++|..-++ +..+..--...++-|+.+.
T Consensus 41 ~~~~~~~~~~~---A~~aL~n--ls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~ 115 (354)
T 3nmw_A 41 MPAPVEHQICP---AVCVLMK--LSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 115 (354)
T ss_dssp CCCGGGGTHHH---HHHHHHH--HHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCCcchHHHHH---HHHHHHH--HcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC
Confidence 57788888873 2333333 221100 113457788888864321 1122323334455556443
Q ss_pred CcchhhhhhcCC-eeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCC-cchHHHHHH
Q psy10488 75 ACLVPAFDMKQG-VRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHES-SLSFATYNV 152 (462)
Q Consensus 75 ~~~~p~fd~~~G-i~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~-~lt~~tYn~ 152 (462)
...-..+...+| +..+++||.+.++.+|-.|.-.|+.+-.+...+-|..+++ .+.--.|-+-|..+.. ..-...-++
T Consensus 116 ~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~a 194 (354)
T 3nmw_A 116 VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSA 194 (354)
T ss_dssp HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 323334445567 9999999999999999999999999865422333433443 3444555555544332 222233456
Q ss_pred HHHHHhcccccccccccCCCCCCccccc-CchHHHHHHHHHhcCcchhHHHHHHHH---HHHHHHHHhhcChhhhhHHHh
Q psy10488 153 LYEILTEHISQQILYTRHPEPESHYRLE-NPMILKVVATLIRQSKQSELLLEVKKL---FLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 153 LfEILle~iSpq~v~~~h~~~ds~~~~~-nP~ILkvIa~LL~qs~~s~~~m~vk~~---fL~DLl~L~~~N~eNRrtlLQ 228 (462)
|+.+-..+-.-+ ..|. ....+.++.++|+...++.. +++++. .|..+-..+..+++||..+.+
T Consensus 195 L~nLs~~~~~nk------------~~i~~~~Gai~~Lv~lL~~~~~~~~-~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~ 261 (354)
T 3nmw_A 195 LWNLSAHCTENK------------ADICAVDGALAFLVGTLTYRSQTNT-LAIIESGGGILRNVSSLIATNEDHRQILRE 261 (354)
T ss_dssp HHHHHTTCHHHH------------HHHHHSTTHHHHHHHHTTCCCSSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHccChhhh------------HHHHHhcCcHHHHHHHhccCCCccc-HHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 776654211101 1233 56788899999986655321 123322 344443333368999988864
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=67.40 E-value=3 Score=44.80 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=46.5
Q ss_pred cCCeeEeeecccCC-CchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Q psy10488 84 KQGVRTVFKLLTSQ-SQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTE 159 (462)
Q Consensus 84 ~~Gi~iffkLL~s~-sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle 159 (462)
.+++..++++|.+. ++.+|..|.+.|+. |+..+.. +.. +........|-+-|-......-.....+|..+...
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~~~~-~~~-i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHN-LSHHREG-LLA-IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTSHHH-HHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCCchh-HHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 35677788888755 88999999999999 4444332 322 22346666666666544444455556666666554
No 28
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=65.67 E-value=2.1 Score=39.76 Aligned_cols=166 Identities=14% Similarity=0.271 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhhc----------ccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHH
Q psy10488 41 DELQSILNYLTTVQ----------EDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLG 110 (462)
Q Consensus 41 ~El~AIlnfl~t~~----------Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG 110 (462)
+=+.+|++++...+ |.+..++++ ..++++..++.++-.++...+++..+...|.+++-.+|..|+++|+
T Consensus 43 ~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l-~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 43 EGLASLLDILKRLHDEKEETSGNYDSRNQHEII-RCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHTCC-----CCHHHHHHHHH-HHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccchhhhHHHHHHHH-HHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 44778888888865 334456666 4456777777788888899999999999999999999999999999
Q ss_pred HHHhcCCcc-c-cccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHH
Q psy10488 111 FFLSRSTHK-R-KYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVV 188 (462)
Q Consensus 111 ~fL~~~~~k-R-K~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvI 188 (462)
. +|..+.. . -.. +...+.+.-- +.. .. =|+.++++... .....+ --..|..|
T Consensus 122 ~-lc~~~~~~G~~~~------VL~Al~~~~~-~~e---~~----RF~~lv~~l~~----------~~~~e~-~~~~m~lI 175 (233)
T 2f31_A 122 A-LCILPQPEDMNER------VLEAMTERAE-MDE---VE----RFQPLLDGLKS----------GTSIAL-KVGCLQLI 175 (233)
T ss_dssp H-HHTCSSSSCHHHH------HHHHHHHHHH-HHT---SC----TTHHHHHTTST----------TSCHHH-HHHHHHHH
T ss_pred H-HHhCCCCCChHHH------HHHHHHHHHH-hCC---cc----hHHHHHHHHhc----------CChHHH-HHHHHHHH
Confidence 7 5655531 1 111 1122211000 000 00 13333332210 111100 11367888
Q ss_pred HHHHhcCcchhHHHHHHHHHHH----HHHHHhhcChhhhhHHHhhcccCC
Q psy10488 189 ATLIRQSKQSELLLEVKKLFLS----DLTLLCNNNRENRRTVLQMSVWQG 234 (462)
Q Consensus 189 a~LL~qs~~s~~~m~vk~~fL~----DLl~L~~~N~eNRrtlLQ~~~wQ~ 234 (462)
=.++.+.++-..++.+|..|.. +++.-+..- +|-.---|+..+..
T Consensus 176 N~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~-~~~~L~~Qi~~fe~ 224 (233)
T 2f31_A 176 NALITPAEELDFRVHIRSELMRLGLHQVLQELREI-ENEDMKVQLCVFDE 224 (233)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhcc-CCHHHHHHHHHHHH
Confidence 8888988888888888877643 444444321 34444445554443
No 29
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=64.58 E-value=11 Score=38.69 Aligned_cols=135 Identities=15% Similarity=0.151 Sum_probs=80.0
Q ss_pred hhhhcCC-eeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCC-cchHHHHHHHHHHH
Q psy10488 80 AFDMKQG-VRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHES-SLSFATYNVLYEIL 157 (462)
Q Consensus 80 ~fd~~~G-i~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~-~lt~~tYn~LfEIL 157 (462)
.+...+| +..+++||.+.++.++-.|.-.|+.+-.+...+.|..+++. +.-..|-+-|..... ..-...-++|+.+-
T Consensus 237 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs 315 (458)
T 3nmz_A 237 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLS 315 (458)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 3444567 99999999999999999999999997543223344344443 444444454544332 22233346677765
Q ss_pred hcccccccccccCCCCCCccccc-CchHHHHHHHHHhcCcchhHHHHHHH---HHHHHHHHHhhcChhhhhHHHh
Q psy10488 158 TEHISQQILYTRHPEPESHYRLE-NPMILKVVATLIRQSKQSELLLEVKK---LFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 158 le~iSpq~v~~~h~~~ds~~~~~-nP~ILkvIa~LL~qs~~s~~~m~vk~---~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
..+-.-+ ..|. ....+.++.++|....++.. +++++ -.|+.+-..+..+++||..+.+
T Consensus 316 ~~~~~nk------------~~I~~~~Gal~~Lv~LL~~~~~~~~-~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~ 377 (458)
T 3nmz_A 316 AHCTENK------------ADICAVDGALAFLVGTLTYRSQTNT-LAIIESGGGILRNVSSLIATNEDHRQILRE 377 (458)
T ss_dssp HHCHHHH------------HHHHHSTTHHHHHHHHTTCCCSSST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHH------------HHHHHhcCcHHHHHHHhcCCCCcch-HHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 5211111 1233 67789999999987665421 12332 2345444434478999988853
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=64.37 E-value=7.9 Score=37.26 Aligned_cols=82 Identities=13% Similarity=0.036 Sum_probs=55.0
Q ss_pred cchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhc---CCCcchHHHHHH
Q psy10488 76 CLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQ---HESSLSFATYNV 152 (462)
Q Consensus 76 ~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~---~~~~lt~~tYn~ 152 (462)
....++-..|++..+++||.+++..||-.|+..||.+....+..++.--.....+-.+|.++.-. |.. ....|..
T Consensus 200 ~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~--~~e~~~~ 277 (296)
T 1xqr_A 200 EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE--YQEELEF 277 (296)
T ss_dssp GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGG--GHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHH--HHHHHHH
Confidence 34456667799999999999999999999999999999875443332111224466777666422 221 2445777
Q ss_pred HHHHHhc
Q psy10488 153 LYEILTE 159 (462)
Q Consensus 153 LfEILle 159 (462)
.++|+-.
T Consensus 278 ~~~il~~ 284 (296)
T 1xqr_A 278 CEKLLQT 284 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=64.03 E-value=9 Score=39.50 Aligned_cols=170 Identities=12% Similarity=0.123 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCC-CchhHHhHHHHHHHHHhcC
Q psy10488 38 VKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQ-SQLIRLQALKLLGFFLSRS 116 (462)
Q Consensus 38 is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~-sE~IRl~ALKlLG~fL~~~ 116 (462)
+..+-+..++.++. +++..+...--..+.-+++++..-...++..+++..++++|.+. ++.+|..|...|+.+- ..
T Consensus 11 ~~~g~i~~Lv~lL~--~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls-~~ 87 (644)
T 2z6h_A 11 LATRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HH 87 (644)
T ss_dssp -CTTTHHHHHHHHT--CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TS
T ss_pred hhhchHHHHHHHHc--CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh-cC
Confidence 45556777777776 34445544444555555665543333344446788888999865 8899999999999644 33
Q ss_pred CccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCc
Q psy10488 117 THKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSK 196 (462)
Q Consensus 117 ~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~ 196 (462)
+ +-+....+ ......|.+-|.......-.....+|..+..+.-..+ ..+....++..+.++|....
T Consensus 88 ~-~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~------------~~v~~~g~i~~Lv~lL~~~~ 153 (644)
T 2z6h_A 88 R-EGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK------------MAVRLAGGLQKMVALLNKTN 153 (644)
T ss_dssp H-HHHHHHHT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH------------HHHHHTTHHHHHHHGGGCCC
T ss_pred h-hhHHHHHH-cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH------------HHHHHCCChHHHHHHHCcCC
Confidence 2 22323333 3555566555543333334445556666555421111 11223456677777776432
Q ss_pred chhHHHHHHHHHHHHHHHHhhcChhhhhHHHhh
Q psy10488 197 QSELLLEVKKLFLSDLTLLCNNNRENRRTVLQM 229 (462)
Q Consensus 197 ~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~ 229 (462)
. +++..-+.=|..|+..+.+||..+.+.
T Consensus 154 ~-----~~~~~a~~~L~~La~~~~~~~~~i~~~ 181 (644)
T 2z6h_A 154 V-----KFLAITTDCLQILAYGNQESKLIILAS 181 (644)
T ss_dssp H-----HHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 1 233333333344555677777766543
No 32
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=62.33 E-value=9.1 Score=40.84 Aligned_cols=169 Identities=13% Similarity=0.186 Sum_probs=95.9
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHhc-CCC--cchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCcc
Q psy10488 43 LQSILNYLTTVQEDENLHDVLQTLISLMCD-HPA--CLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHK 119 (462)
Q Consensus 43 l~AIlnfl~t~~Ed~nl~DVL~mli~LLsE-~P~--~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~k 119 (462)
++.++.++......+-.+.+.--|-.|-.. +|. .+.-.+.+.+|+.++++||.+.++.++..|...|+.+-.....
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~- 388 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN- 388 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC-
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH-
Confidence 445566665554433334433333333221 111 1223455678999999999999999999999999998654322
Q ss_pred ccccccCcchhHHHHHHHHhcCCC---------cchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHH
Q psy10488 120 RKYDVMSPHNLYTLLAERLLQHES---------SLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVAT 190 (462)
Q Consensus 120 RK~~~m~~~~lfslLseRL~~~~~---------~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~ 190 (462)
.+.+.. ...--|-..|. ++. ..-...+.+|.++.++. +.. .-.+..-..+..+..
T Consensus 389 --~~~I~~-g~ip~LV~LL~-~~~~~~~~~~s~~v~~~a~~tL~NL~a~~--~~~----------~~~I~~~g~I~~Lv~ 452 (584)
T 3l6x_A 389 --KELIGK-HAIPNLVKNLP-GGQQNSSWNFSEDTVISILNTINEVIAEN--LEA----------AKKLRETQGIEKLVL 452 (584)
T ss_dssp --HHHHHH-HHHHHHHHTSS-SSSCSGGGTCCHHHHHHHHHHHHHHHTTC--HHH----------HHHHHHTTHHHHHHH
T ss_pred --HHHHHh-CCHHHHHHHhc-CCcccccccchHHHHHHHHHHHHHHhcCC--HHH----------HHHHHHCCChHHHHH
Confidence 234433 33344443333 331 22345677788888763 322 123556677888888
Q ss_pred HHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHhhcccC
Q psy10488 191 LIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ 233 (462)
Q Consensus 191 LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~~~wQ 233 (462)
+++....++...+.=-..|.. +-++.++|+.+-+ +.|-
T Consensus 453 LL~s~~~~~~v~k~Aa~vL~n----l~~~~elr~~~kk-~G~~ 490 (584)
T 3l6x_A 453 INKSGNRSEKEVRAAALVLQT----IWGYKELRKPLEK-EGWK 490 (584)
T ss_dssp HHTCSSSCHHHHHHHHHHHHH----HHTSHHHHHHHHT-TTCC
T ss_pred HHhCCCCChHHHHHHHHHHHH----HHcCHHHHHHHHH-cCCC
Confidence 988653333322221223333 3358889999976 5553
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=48.99 E-value=21 Score=39.63 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=78.1
Q ss_pred hcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCC-CcchHHHHHHHHHHHhccc
Q psy10488 83 MKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHE-SSLSFATYNVLYEILTEHI 161 (462)
Q Consensus 83 ~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~-~~lt~~tYn~LfEILle~i 161 (462)
.-||+..++.||.++++.||-.|+.++|.+..+ +..++ ..+......-.|-. |+..+ ...-.....+|-.+..+
T Consensus 621 ~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~-~~v~~~g~l~~Lv~-LL~s~d~~vq~~Aa~ALanLt~~-- 695 (810)
T 3now_A 621 KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIK-MFEGNNDRVKFLAL-LCEDEDEETATACAGALAIITSV-- 695 (810)
T ss_dssp HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHH-HHHSSSSHHHHHHH-GGGCSSHHHHHHHHHHHHHHHHH--
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHH-HHHhccCcHHHHHH-HhcCCCHHHHHHHHHHHHHHhCC--
Confidence 347899999999999999999999999998753 22333 22332233333322 33332 22223344555555544
Q ss_pred ccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHhh
Q psy10488 162 SQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQM 229 (462)
Q Consensus 162 Spq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~ 229 (462)
++.+. ..-+.+...+..+..++...++ ++|+.-+.=+..+...++++++.+.+.
T Consensus 696 s~~~~---------~~ii~~~g~I~~Lv~LL~s~d~-----~vq~~A~~aL~NL~~~s~e~~~~l~e~ 749 (810)
T 3now_A 696 SVKCC---------EKILAIASWLDILHTLIANPSP-----AVQHRGIVIILNMINAGEEIAKKLFET 749 (810)
T ss_dssp CHHHH---------HHHHTSTTHHHHHHHHHTCSSH-----HHHHHHHHHHHHHHTTCHHHHHHHHTS
T ss_pred CHHHH---------HHHHHHcCCHHHHHHHHCCCCH-----HHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 33321 1224447888899999984322 356666666667777788888777644
No 34
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=42.00 E-value=47 Score=34.09 Aligned_cols=132 Identities=11% Similarity=0.115 Sum_probs=80.6
Q ss_pred hhhhhcCCeeEeeec-ccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCc----chHHHHHHH
Q psy10488 79 PAFDMKQGVRTVFKL-LTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESS----LSFATYNVL 153 (462)
Q Consensus 79 p~fd~~~Gi~iffkL-L~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~----lt~~tYn~L 153 (462)
.++-.-||+..+++| +.+.++.++-.|+..|+-+-...+.. |...+...+.-..|.+-|...... +......+|
T Consensus 280 ~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n-k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL 358 (458)
T 3nmz_A 280 KTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL 358 (458)
T ss_dssp HHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH-HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH-HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 344456899999996 56678899999999998876544333 334443455666666666544332 445556677
Q ss_pred HHHHh---cccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHh
Q psy10488 154 YEILT---EHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQ 228 (462)
Q Consensus 154 fEILl---e~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ 228 (462)
+.+-. + ++.. ...+..-..+..+..+|+..+. ++++.-..=|-.|+..+++|+..+.+
T Consensus 359 ~nLs~~~a~--~~~~----------~~~i~~~G~i~~Lv~LL~~~~~-----~v~~~A~~aL~nLa~~~~~~~~~i~~ 419 (458)
T 3nmz_A 359 RNVSSLIAT--NEDH----------RQILRENNCLQTLLQHLKSHSL-----TIVSNACGTLWNLSARNPKDQEALWD 419 (458)
T ss_dssp HHHHHHHTT--CHHH----------HHHHHHTTHHHHHHHHSSCSCH-----HHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHhcccC--CHHH----------HHHHHHcccHHHHHHHHcCCCh-----HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77543 2 1221 1123334567777888874332 24555555556667678999988864
No 35
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=41.48 E-value=35 Score=36.42 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHh
Q psy10488 35 GPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLS 114 (462)
Q Consensus 35 ~~~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~ 114 (462)
..+..+.++..++++|..- +.+.-......+ +.++.+....--.+-..||+..+++||.+.++.++-.|...|+.+-.
T Consensus 42 ~~~~~~~~i~~LV~~L~s~-~~~~q~~Aa~~L-~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFR-LDAVKSNAAAYL-QHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCS-CHHHHHHHHHHH-HHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred CCCcccccHHHHHHHHCCC-CHHHHHHHHHHH-HHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 4566789999999999754 344444555444 44453333334455567999999999999999999999999999876
Q ss_pred cCCccccccccCcchhHHHHHHHHhcCC-CcchHHHHHHHHHH
Q psy10488 115 RSTHKRKYDVMSPHNLYTLLAERLLQHE-SSLSFATYNVLYEI 156 (462)
Q Consensus 115 ~~~~kRK~~~m~~~~lfslLseRL~~~~-~~lt~~tYn~LfEI 156 (462)
+...+-|..+++. +.-..|-+-|.... ..+-...-.+|+.+
T Consensus 120 ~~~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 120 GRDQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNL 161 (584)
T ss_dssp SSCHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4334444344443 33344444443322 22234444566664
No 36
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=40.69 E-value=13 Score=39.29 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=49.3
Q ss_pred HHHHHHHHhh---------hcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHH
Q psy10488 43 LQSILNYLTT---------VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFL 113 (462)
Q Consensus 43 l~AIlnfl~t---------~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL 113 (462)
++.|++.|.+ .+|...+.=+.+=|=..+-.||.+-. ..++.||=..+.+|++.+++.||-.||+.+++++
T Consensus 397 lk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~-i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 397 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-VLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-HHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhH-HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4667777764 22333332222222233345676443 5567789999999999999999999999999998
Q ss_pred hcC
Q psy10488 114 SRS 116 (462)
Q Consensus 114 ~~~ 116 (462)
...
T Consensus 476 ~~~ 478 (480)
T 1ho8_A 476 GYT 478 (480)
T ss_dssp HHS
T ss_pred Hhc
Confidence 653
No 37
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=40.27 E-value=24 Score=36.03 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccHHHHH-------HHHHHHHhcCCCc---chhhhhhcCCe
Q psy10488 18 LAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVL-------QTLISLMCDHPAC---LVPAFDMKQGV 87 (462)
Q Consensus 18 ~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~nl~DVL-------~mli~LLsE~P~~---~~p~fd~~~Gi 87 (462)
.++|..+..|++.....+.... ..+=..|++|....|..-+.-+. -++.+.++.+|.. +-...+....+
T Consensus 77 ~~vRk~~a~FieEa~~~~~el~-~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~l 155 (386)
T 3o2t_A 77 IEVRKFVIGFIEEACKRDIELL-LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAM 155 (386)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 4588899999988776544443 23333344444322221122222 2555666666652 12222221110
Q ss_pred -eEeeecccCCCchhHHhHHHHHHHHHh
Q psy10488 88 -RTVFKLLTSQSQLIRLQALKLLGFFLS 114 (462)
Q Consensus 88 -~iffkLL~s~sE~IRl~ALKlLG~fL~ 114 (462)
.-+++++.+++++||+.|+||+-....
T Consensus 156 K~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 156 AGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 135667889999999999999998664
No 38
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=39.89 E-value=1.6e+02 Score=32.23 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---Hhh----hccc------ccHHHHHHHHHHHHhcCCCcchhhhhhcC
Q psy10488 19 AIRAYILLFLKQLMMLGPGVKEDELQSILNY---LTT----VQED------ENLHDVLQTLISLMCDHPACLVPAFDMKQ 85 (462)
Q Consensus 19 ~IR~~LL~~lkqLi~~~~~is~~El~AIlnf---l~t----~~Ed------~nl~DVL~mli~LLsE~P~~~~p~fd~~~ 85 (462)
.||.--+.++-.|... ..|+|.|++| |+. +.+. .-+.|.|.++..|+..+|+ =+-+|-..+
T Consensus 181 ~iRneallLL~~Lt~~-----n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s-NQ~~FrEt~ 254 (651)
T 3grl_A 181 VIRNDGVLLLQALTRS-----NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS-NQNFFKEGS 254 (651)
T ss_dssp HHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC-----CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH-HHHHHHHcC
Confidence 4677666677666622 3899999999 333 2332 3489999999999998653 367788888
Q ss_pred CeeEeeecccCCCch------h---HHhHHHHHHHHHhcCCc----cccccccCcchhHHHHHHHHhcC--CCcchHHHH
Q psy10488 86 GVRTVFKLLTSQSQL------I---RLQALKLLGFFLSRSTH----KRKYDVMSPHNLYTLLAERLLQH--ESSLSFATY 150 (462)
Q Consensus 86 Gi~iffkLL~s~sE~------I---Rl~ALKlLG~fL~~~~~----kRK~~~m~~~~lfslLseRL~~~--~~~lt~~tY 150 (462)
++.-..+||..+.|. . -..+|+++.-|+..... +.....+..+++...|-+=++.. +..+-..+-
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999888999876553 1 22388999988865332 11223444455555554444433 222223345
Q ss_pred HHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHH
Q psy10488 151 NVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVL 227 (462)
Q Consensus 151 n~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlL 227 (462)
+++=|+..|+..-|.....-.-|.. -..|.++.....++ ++.+. ..+|---..=+...+.+|.+....+.
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~---~~~p~li~lL~~~~-~~~~~---~~lR~Aa~~cl~ay~~~N~~~Q~~i~ 404 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSN---PPRPAIVVLLMSMV-NERQP---FVLRCAVLYCFQCFLYKNQKGQGEIV 404 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSS---SCEEHHHHHHHHHT-CTTSC---HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCC---CCcChHHHHHHHHh-ccccc---HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5666666666554432211111110 01366665544433 34443 23444446666777888887666554
No 39
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=37.82 E-value=56 Score=32.43 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=60.8
Q ss_pred hhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCc-------chHHHHHH
Q psy10488 80 AFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESS-------LSFATYNV 152 (462)
Q Consensus 80 ~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~-------lt~~tYn~ 152 (462)
++..-+|+..+++||.+.++.||-.|...|+.+-.. .+-...+..+ ....|-+-|. .+.+ .-.....+
T Consensus 326 ~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~-~i~~Lv~lL~-~~~~~~~~~~~v~~~~l~~ 400 (457)
T 1xm9_A 326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQ-VFPEVTRLLT-SHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHH-THHHHHHTTT-SCCSCSTTHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHh-hhHHHHHhcc-CCCCCCCCcHHHHHHHHHH
Confidence 455679999999999999999999999999999642 2222333332 3333333333 2211 12255666
Q ss_pred HHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcC
Q psy10488 153 LYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQS 195 (462)
Q Consensus 153 LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs 195 (462)
|..++.+. +. ....+.....+..+..++...
T Consensus 401 l~ni~~~~--~~----------~~~~i~~~g~l~~L~~L~~~~ 431 (457)
T 1xm9_A 401 VRNLMASQ--PQ----------LAKQYFSSSMLNNIINLCRSS 431 (457)
T ss_dssp HHHHHTTC--TH----------HHHHHCCHHHHHHHHHHHHCT
T ss_pred HHHHHhcC--HH----------HHHHHHHcCCHHHHHHHHcCC
Confidence 66666542 11 123456667777777777754
No 40
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=37.73 E-value=3.2e+02 Score=29.15 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=68.6
Q ss_pred CCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcc-hHHHHHHHHHHHhcccccccccccCCCCCC
Q psy10488 97 QSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSL-SFATYNVLYEILTEHISQQILYTRHPEPES 175 (462)
Q Consensus 97 ~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~l-t~~tYn~LfEILle~iSpq~v~~~h~~~ds 175 (462)
++..+|-.++.+++.++...+..--.....-..++..+..= +.+.... .......|-+++.. .. .++.
T Consensus 785 ~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~-l~~~~~~~~~~~l~~l~~l~~~-~~---------~~~~ 853 (963)
T 2x19_B 785 DHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLA-LKFPEAPTVKASCGFFTELLPR-CG---------EVES 853 (963)
T ss_dssp TCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHGGG-TT---------SSCH
T ss_pred cCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHhc-CC---------ChHH
Confidence 45789999999999999877755322111111223333332 3343222 22233334443322 11 0111
Q ss_pred c---ccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHH-HHHhhcChhhhhHHHh----hcccC--CcchHHHHHHHH
Q psy10488 176 H---YRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDL-TLLCNNNRENRRTVLQ----MSVWQ--GMPIEVAVSFLQ 245 (462)
Q Consensus 176 ~---~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DL-l~L~~~N~eNRrtlLQ----~~~wQ--~l~ie~a~~fl~ 245 (462)
. ..-..+.++..++..+.........-. +.++ ..|...+++.-+..|+ .+..+ +++-+..-.|++
T Consensus 854 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-----~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~ 928 (963)
T 2x19_B 854 VGKVVQEDGRMLLIAVLEAIGGQASRSLMDC-----FADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQ 928 (963)
T ss_dssp HHHHTTTSHHHHHHHHHHHHTTTSCGGGHHH-----HHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCChhHHHH-----HHHHHHHHHHHChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHH
Confidence 1 122357788888888875544443211 2222 2345566655454443 22344 677788888888
Q ss_pred HH
Q psy10488 246 RL 247 (462)
Q Consensus 246 Rl 247 (462)
.|
T Consensus 929 ~l 930 (963)
T 2x19_B 929 QI 930 (963)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 41
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=37.02 E-value=1.7e+02 Score=31.71 Aligned_cols=93 Identities=19% Similarity=0.161 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhh--------cccccHHHHHHHHHHHHhcCCC------------
Q psy10488 16 DILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTV--------QEDENLHDVLQTLISLMCDHPA------------ 75 (462)
Q Consensus 16 EI~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~--------~Ed~nl~DVL~mli~LLsE~P~------------ 75 (462)
|-.+.|..-..++..|....+ +.=+..++.|+..+ +++|...|.--+.+..++++-.
T Consensus 373 d~~s~R~aa~~~L~~l~~~~~---~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~ 449 (960)
T 1wa5_C 373 DTDTRRRACTDFLKELKEKNE---VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNL 449 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTT
T ss_pred cccCcHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccc
Confidence 345788888888887764432 23345666665442 5677888988888888876411
Q ss_pred -cchhhhhhcCCeeEeeecccCC---CchhHHhHHHHHHHHHhcC
Q psy10488 76 -CLVPAFDMKQGVRTVFKLLTSQ---SQLIRLQALKLLGFFLSRS 116 (462)
Q Consensus 76 -~~~p~fd~~~Gi~iffkLL~s~---sE~IRl~ALKlLG~fL~~~ 116 (462)
.+.++|.+ .++..|.++ +..+|.-|++++|+|-...
T Consensus 450 ~~l~~~l~~-----~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~ 489 (960)
T 1wa5_C 450 LNVVDFFTK-----EIAPDLTSNNIPHIILRVDAIKYIYTFRNQL 489 (960)
T ss_dssp CCHHHHHHH-----HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS
T ss_pred ccHHHHHHH-----HhHHHhcCCCCCCceehHHHHHHHHHHHhhC
Confidence 22233321 245556666 7889999999999998765
No 42
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=36.58 E-value=38 Score=32.57 Aligned_cols=95 Identities=12% Similarity=0.260 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccH-HH-------HHHHHHHHHhcCCCc---chhhhhhcCC
Q psy10488 18 LAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENL-HD-------VLQTLISLMCDHPAC---LVPAFDMKQG 86 (462)
Q Consensus 18 ~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~nl-~D-------VL~mli~LLsE~P~~---~~p~fd~~~G 86 (462)
.++|..+..|++.....+......=+.+|..++. .+|..+ .. +--.+.+.++.+|.. .....+....
T Consensus 67 ~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~--d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~ 144 (257)
T 3gs3_A 67 MEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLR--DNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL 144 (257)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 4689999999998877766665455555555543 223221 11 223556677777651 2333333322
Q ss_pred e-eEeeecccCCCchhHHhHHHHHHHHHh
Q psy10488 87 V-RTVFKLLTSQSQLIRLQALKLLGFFLS 114 (462)
Q Consensus 87 i-~iffkLL~s~sE~IRl~ALKlLG~fL~ 114 (462)
+ .-+++++.+++++||+.|+||+-....
T Consensus 145 lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 145 IKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 1 235677889999999999999998653
No 43
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=35.35 E-value=7.9 Score=39.29 Aligned_cols=55 Identities=27% Similarity=0.322 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCCcchhhhhhcCC--eeEeeecccCCCchhHHhHHHHHHHHH
Q psy10488 59 LHDVLQTLISLMCDHPACLVPAFDMKQG--VRTVFKLLTSQSQLIRLQALKLLGFFL 113 (462)
Q Consensus 59 l~DVL~mli~LLsE~P~~~~p~fd~~~G--i~iffkLL~s~sE~IRl~ALKlLG~fL 113 (462)
-.|.....=.+|..|+..+..|+.+.-. ..-+-+||.|++=-+|-+|||+||-+|
T Consensus 181 asDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 181 ASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 4688888899999999888877775421 112337999999999999999999998
No 44
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=34.05 E-value=36 Score=37.86 Aligned_cols=152 Identities=12% Similarity=0.194 Sum_probs=87.3
Q ss_pred HHHHHHHHhhhcccccHHH-HHHHHHHHHhcCCCcc-hhhhhhc-----CCeeEeeecccCCCchhHHhHHHHHHHHHhc
Q psy10488 43 LQSILNYLTTVQEDENLHD-VLQTLISLMCDHPACL-VPAFDMK-----QGVRTVFKLLTSQSQLIRLQALKLLGFFLSR 115 (462)
Q Consensus 43 l~AIlnfl~t~~Ed~nl~D-VL~mli~LLsE~P~~~-~p~fd~~-----~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~ 115 (462)
+..|.+++.. +.+.+.. ..+++-.|+ .+|..+ ..+|+.. ++++++++|+.++++.+|..|-=.|+-+-..
T Consensus 608 ~~~L~~LL~s--~n~~VrrAA~elI~NL~-~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 608 WSTIENLMLD--ENVPLQRSTLELISNMM-SHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHGGGC--SSHHHHHHHHHHHHHHH-TSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHHh-CCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 4555555543 3445555 444444444 468877 4777633 3588999999999999999999888887665
Q ss_pred CCccccccccCcchhHHHHHHHHhc--CCCcchHHHHHHHHHHHhcccccccccccCCCCCCcccccCchHHHHHHHHHh
Q psy10488 116 STHKRKYDVMSPHNLYTLLAERLLQ--HESSLSFATYNVLYEILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIR 193 (462)
Q Consensus 116 ~~~kRK~~~m~~~~lfslLseRL~~--~~~~lt~~tYn~LfEILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~ 193 (462)
.+.-.+ ..++...++..+-+-|-. ....+-...--+|+.+. + ..|. .+.+-.-....+|+-..+...+.++
T Consensus 685 ~~~ia~-~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~-~-~~~~----~~~~~~~~~~~~~~~l~~~l~~~lk 757 (778)
T 3opb_A 685 IPLIAK-ELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF-E-VIPD----NGTNEVYPLLQENQKLKDALNMSLK 757 (778)
T ss_dssp CHHHHH-HHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-T-TCCS----TTTTSCCHHHHSCHHHHHHHHHHHS
T ss_pred ChHHHH-HHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH-H-hhcc----CCChHHHHHHhcChHHHHHHHHHHh
Confidence 555444 334444444444443332 12111112222333332 2 1111 1111112234569999999999999
Q ss_pred cCcchhHHHHH
Q psy10488 194 QSKQSELLLEV 204 (462)
Q Consensus 194 qs~~s~~~m~v 204 (462)
.+++.++.++.
T Consensus 758 ~~~~~~e~~~~ 768 (778)
T 3opb_A 758 RGDSGPEFSAA 768 (778)
T ss_dssp SSSSCSSTTSH
T ss_pred CCCchHHHHHH
Confidence 99877765544
No 45
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=33.39 E-value=29 Score=24.27 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=13.0
Q ss_pred CCCCCCCCCCChhhHHH
Q psy10488 3 HNHIVDGPRPAQKDILA 19 (462)
Q Consensus 3 ~pK~v~g~RPs~eEI~~ 19 (462)
|+--.+-+|||.++|+.
T Consensus 2 k~~P~vPpRPs~~lIl~ 18 (32)
T 1k4u_P 2 KPQPAVPPRPSADLILN 18 (32)
T ss_dssp CCCCCCCCCCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHH
Confidence 34445789999999974
No 46
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=32.70 E-value=49 Score=36.77 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=69.8
Q ss_pred hhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCc-chHHHHHHHHHHHh
Q psy10488 80 AFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESS-LSFATYNVLYEILT 158 (462)
Q Consensus 80 ~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~-lt~~tYn~LfEILl 158 (462)
+.+..+++.++++||.++++.+|..|...|+.+-.+.+...+. .+...+....|-+ |+.+++. +-....-++..+..
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~-ii~~~g~I~~Lv~-LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEK-ILAIASWLDILHT-LIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHH-HHTSTTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHH-HHHHcCCHHHHHH-HHCCCCHHHHHHHHHHHHHHHh
Confidence 3333578899999999999999999999999999876655553 3443455555554 5554432 22222333444333
Q ss_pred cccccccccccCCCCCCcccccCchHHHHHHHHHhcCc-chhHHHHHHHHHHHHHH
Q psy10488 159 EHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSK-QSELLLEVKKLFLSDLT 213 (462)
Q Consensus 159 e~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~-~s~~~m~vk~~fL~DLl 213 (462)
+ ++.+ ...+..-.++..+..+++.++ ...+..++=...|..++
T Consensus 738 ~--s~e~----------~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 738 A--GEEI----------AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp T--CHHH----------HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred C--CHHH----------HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 2 2222 123455567777777776542 23334444333444443
No 47
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=30.20 E-value=1e+02 Score=26.08 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCC
Q psy10488 16 DILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPA 75 (462)
Q Consensus 16 EI~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~ 75 (462)
+..++|.-|..=.| +.|-.++.+=++.|++||..+.+.+ .+|+|+-|++.+-.+|.
T Consensus 26 ~~~rlrk~I~k~FK---L~Gl~Lr~dA~~~L~~~L~~~~~~e-~e~~L~~Iid~lqkq~L 81 (99)
T 2v6z_M 26 APERLRSRALSAFK---LRGLLLRGEAIKYLTEALQSISELE-LEDKLEKIINAVEKQPL 81 (99)
T ss_dssp CHHHHHHHHHHHHH---HTTCEECHHHHHHHHHHTTTSCTTT-HHHHHHHHHHHHTTSCC
T ss_pred cHHHHHHHHHHHhh---hcceeecHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHhCcC
Confidence 45678888888777 6777888899999999998887654 88999999999999873
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=29.33 E-value=76 Score=32.80 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHhhhccc-ccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEe
Q psy10488 17 ILAIRAYILLFLKQLMMLGP-----GVKEDELQSILNYLTTVQED-ENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTV 90 (462)
Q Consensus 17 I~~IR~~LL~~lkqLi~~~~-----~is~~El~AIlnfl~t~~Ed-~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~if 90 (462)
+.++|..++..+..++..-+ +....=+..+++.+...++. .-.++++..+-.+....+..+.|+++. -+.++
T Consensus 577 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~~~l 654 (876)
T 1qgr_A 577 FNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA--FKPFL 654 (876)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHH--HHHHH
Confidence 45677777777777653211 00111122233333222211 113345554444443333456777765 34567
Q ss_pred eecccCC-CchhHHhHHHHHHHHHhcCCccccccccC--cchhHHHHHHHHh
Q psy10488 91 FKLLTSQ-SQLIRLQALKLLGFFLSRSTHKRKYDVMS--PHNLYTLLAERLL 139 (462)
Q Consensus 91 fkLL~s~-sE~IRl~ALKlLG~fL~~~~~kRK~~~m~--~~~lfslLseRL~ 139 (462)
++.|... +..||..|++.+|.+......+ +. -..++..+.+.|.
T Consensus 655 ~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~i~~~l~~~l~ 701 (876)
T 1qgr_A 655 GIGLKNYAEYQVCLAAVGLVGDLCRALQSN-----IIPFCDEVMQLLLENLG 701 (876)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHHHHGGG-----GHHHHHHHHHHHHHHHT
T ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHhC
Confidence 7778776 8899999999999998765421 11 1345555555554
No 49
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=27.57 E-value=68 Score=30.14 Aligned_cols=62 Identities=19% Similarity=0.199 Sum_probs=40.5
Q ss_pred ccccHHHHHHHHHHHHhcCCC--cchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCc
Q psy10488 55 EDENLHDVLQTLISLMCDHPA--CLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTH 118 (462)
Q Consensus 55 Ed~nl~DVL~mli~LLsE~P~--~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~ 118 (462)
.++.+-+.--+.+..+++.+. .+.+++ ..-+..++++|..++..||-.|...||.+....+.
T Consensus 378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 344455555555555555322 222322 23456788999999999999999999999976643
No 50
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=25.66 E-value=52 Score=27.05 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=17.9
Q ss_pred hcCCCCCHHHHHHHHHHHhh
Q psy10488 33 MLGPGVKEDELQSILNYLTT 52 (462)
Q Consensus 33 ~~~~~is~~El~AIlnfl~t 52 (462)
+.+.+|+++|.++|++||..
T Consensus 71 mpg~~Is~eda~~Iv~YLa~ 90 (92)
T 3a9f_A 71 FPGSGISDDDAKTIGIWLHE 90 (92)
T ss_dssp STTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999975
No 51
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=25.47 E-value=6.3e+02 Score=27.88 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhhcc----cccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCC
Q psy10488 42 ELQSILNYLTTVQE----DENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRST 117 (462)
Q Consensus 42 El~AIlnfl~t~~E----d~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~ 117 (462)
..+.++.++...-+ ..--+.++..+..++...|..+.|+++. -+..++++|..++..||-.|++.+|.+....+
T Consensus 130 ~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~--ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS--ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHH--HHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHH--HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 35555555554322 2233556666666666556666676543 35568889999999999999999999986554
No 52
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=24.94 E-value=37 Score=25.01 Aligned_cols=18 Identities=17% Similarity=0.564 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHhhh
Q psy10488 36 PGVKEDELQSILNYLTTV 53 (462)
Q Consensus 36 ~~is~~El~AIlnfl~t~ 53 (462)
..++++|+++|++|+.+.
T Consensus 69 ~~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 69 KGLSDAELKALADFILSH 86 (87)
T ss_dssp GGCCHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 367999999999999764
No 53
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=24.67 E-value=50 Score=32.42 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=74.0
Q ss_pred hcCCeeEeeecccCCCch----hHHhHHHHHHHHHh---cCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHH
Q psy10488 83 MKQGVRTVFKLLTSQSQL----IRLQALKLLGFFLS---RSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYE 155 (462)
Q Consensus 83 ~~~Gi~iffkLL~s~sE~----IRl~ALKlLG~fL~---~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfE 155 (462)
..||+..+++||.+.++. |+-.|.-.|..+-. ..+.-| ..+...+....|-+-|....+..-.....+|..
T Consensus 212 ~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n 289 (354)
T 3nmw_A 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR--QILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289 (354)
T ss_dssp STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH--HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH--HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 457899999999988764 88777777766543 333323 344556677777777765555555556667776
Q ss_pred HHhcccccccccccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhH
Q psy10488 156 ILTEHISQQILYTRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRT 225 (462)
Q Consensus 156 ILle~iSpq~v~~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrt 225 (462)
+-.+ ++.+ ...+..-..+..+..+++... . ++|+.-..=|..|+.++++..+.
T Consensus 290 La~~--~~~~----------~~~i~~~G~i~~Lv~LL~s~~-~----~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 290 LSAR--NPKD----------QEALWDMGAVSMLKNLIHSKH-K----MIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp HTSS--CHHH----------HHHHHHTTHHHHHHTTTTCSS-H----HHHHHHHHHHHHHHTTCCGGGC-
T ss_pred HhCC--CHHH----------HHHHHHCCCHHHHHHHHhCCC-H----HHHHHHHHHHHHHHcCCHHHHhh
Confidence 5433 2222 112334456677777776432 2 24555455566777777765543
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=24.64 E-value=52 Score=30.94 Aligned_cols=30 Identities=10% Similarity=0.294 Sum_probs=24.3
Q ss_pred eeEeeecccCC--CchhHHhHHHHHHHHHhcC
Q psy10488 87 VRTVFKLLTSQ--SQLIRLQALKLLGFFLSRS 116 (462)
Q Consensus 87 i~iffkLL~s~--sE~IRl~ALKlLG~fL~~~ 116 (462)
+..+++.+.+. ++.+|..|++.||.+....
T Consensus 130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (462)
T 1ibr_B 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (462)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhC
Confidence 34456677788 8999999999999998765
No 55
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=24.11 E-value=1.1e+02 Score=26.95 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhcCCeeEeeeccc-CCCchhHHhHHHHHHHHHhcCCccccccccCc--chhHHHHHHH
Q psy10488 61 DVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLT-SQSQLIRLQALKLLGFFLSRSTHKRKYDVMSP--HNLYTLLAER 137 (462)
Q Consensus 61 DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~-s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~--~~lfslLseR 137 (462)
..+.-+-.++..+|....+.+... +..+.++|. ..+..||-.|++.+|.+...+.. .+.+ ..++..|-++
T Consensus 34 ~a~~~L~~l~~~~~~~~~~~~~~i--~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-----~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 34 ESLEVLEKLLTDHPKLENGEYGAL--VSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-----RFSNYASACVPSLLEK 106 (242)
T ss_dssp HHHHHHHHHHHHCSSBCCCCCHHH--HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-----GGHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCCHHHH--HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHH
Confidence 344444444544443222222211 333455663 66777999999999999965432 1122 2255555555
Q ss_pred HhcCCCcchHHHHHHHHHH
Q psy10488 138 LLQHESSLSFATYNVLYEI 156 (462)
Q Consensus 138 L~~~~~~lt~~tYn~LfEI 156 (462)
+---....-.....+|.++
T Consensus 107 l~d~~~~vr~~a~~aL~~~ 125 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAI 125 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 5433323333344444444
No 56
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=24.08 E-value=1.3e+02 Score=21.89 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHhhh
Q psy10488 37 GVKEDELQSILNYLTTV 53 (462)
Q Consensus 37 ~is~~El~AIlnfl~t~ 53 (462)
..+++|+++|++|+.+.
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 47999999999999864
No 57
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=23.88 E-value=1.9e+02 Score=21.08 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHhhh
Q psy10488 37 GVKEDELQSILNYLTTV 53 (462)
Q Consensus 37 ~is~~El~AIlnfl~t~ 53 (462)
..+++|+++|++|+.+.
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp CCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 57899999999999764
No 58
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=22.97 E-value=3.8e+02 Score=27.36 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCCchhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhc
Q psy10488 61 DVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQ 140 (462)
Q Consensus 61 DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~sE~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~ 140 (462)
++..-++-++.|+....... ..-++.+++-+..++..||..+|..++++..+.|... +....-+=++...
T Consensus 443 ~~~~~~~wilGey~~~~~~~---~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-------~~~i~~ll~~~~~ 512 (591)
T 2vgl_B 443 DARAAMIWIVGEYAERIDNA---DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-------QELVQQVLSLATQ 512 (591)
T ss_dssp HHHHHHHHHHHTTCTTCTTH---HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccccccCH---HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-------HHHHHHHHHHhhh
Confidence 45555566666654433211 1112334555567888999999999999998776543 1222223334333
Q ss_pred CCCcchHHHHHHHHHHHhc
Q psy10488 141 HESSLSFATYNVLYEILTE 159 (462)
Q Consensus 141 ~~~~lt~~tYn~LfEILle 159 (462)
.+......-.++.|--|+.
T Consensus 513 d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 513 DSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp TCCCHHHHHHHHHHHTTTT
T ss_pred cCCChHHHHHHHHHHHHHC
Confidence 3345567778888776664
No 59
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=22.70 E-value=47 Score=24.67 Aligned_cols=17 Identities=12% Similarity=0.450 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHhhh
Q psy10488 37 GVKEDELQSILNYLTTV 53 (462)
Q Consensus 37 ~is~~El~AIlnfl~t~ 53 (462)
..+++|+++|++|+.+.
T Consensus 63 ~Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 47899999999999763
No 60
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=22.65 E-value=78 Score=29.63 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred eeecccCCCc--hhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchHHHHHHHHHHHhccccccccc
Q psy10488 90 VFKLLTSQSQ--LIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSFATYNVLYEILTEHISQQILY 167 (462)
Q Consensus 90 ffkLL~s~sE--~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~~tYn~LfEILle~iSpq~v~ 167 (462)
++++|.+.++ .++..|...+..+-.+.+.-|+ .+.+...+ -.|-+-|-......-.....+|..+-.++-.-+..
T Consensus 13 lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~-~I~~~G~I-p~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~- 89 (233)
T 3tt9_A 13 AVSMLEADHMLPSRISAAATFIQHECFQKSEARK-RVNQLRGI-LKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE- 89 (233)
T ss_dssp HHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH-HHHHTTHH-HHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHH-HHHHcCCH-HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH-
Q ss_pred ccCCCCCCcccccCchHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhhcChhhhhHHHhhcccCCcchHHHHHHHHHH
Q psy10488 168 TRHPEPESHYRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMPIEVAVSFLQRL 247 (462)
Q Consensus 168 ~~h~~~ds~~~~~nP~ILkvIa~LL~qs~~s~~~m~vk~~fL~DLl~L~~~N~eNRrtlLQ~~~wQ~l~ie~a~~fl~Rl 247 (462)
|..-.-+..+.++|+.+.+... ++.-..=|..| +...+||+.+ ++.|+..|..+
T Consensus 90 -----------I~~~GaI~~Lv~lL~~~~~~~~----~e~a~~aL~nL-S~~~~~k~~i----------~~~~i~~Lv~l 143 (233)
T 3tt9_A 90 -----------VAELNGVPRLLQVLKQTRDLET----KKQITGLLWNL-SSNDKLKNLM----------ITEALLTLTEN 143 (233)
T ss_dssp -----------HHHTTHHHHHHHHHHHCCCHHH----HHHHHHHHHHH-HTSGGGHHHH----------HHHHHHHHCCC
T ss_pred -----------HHHcCCHHHHHHHHccCCCHHH----HHHHHHHHHHH-HcChhhHHHH----------HhccHHHHHHH
Q ss_pred HH------------------hhhhheeec----CCCchhhhhhccC-CcchHHHHHHHH----------------HhHHH
Q psy10488 248 VN------------------MADVLVFAS----SLNFAELEAEKNM-SSGGILRQCLRL----------------VCTCA 288 (462)
Q Consensus 248 ~~------------------lvDvlvfas----~lnFsEiEaEKnM-ssGGilRQcLRl----------------vc~~a 288 (462)
+. -.+|+.-|+ +++..+-|+.|-| ..||...-...+ -|.||
T Consensus 144 l~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~ 223 (233)
T 3tt9_A 144 IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCI 223 (233)
T ss_dssp CCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHH
Q ss_pred hhh
Q psy10488 289 VRN 291 (462)
Q Consensus 289 VRn 291 (462)
.||
T Consensus 224 L~n 226 (233)
T 3tt9_A 224 LHN 226 (233)
T ss_dssp HHH
T ss_pred HHH
No 61
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=22.43 E-value=34 Score=33.11 Aligned_cols=111 Identities=13% Similarity=0.162 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhhcCCeeEeeecccCCC
Q psy10488 19 AIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQS 98 (462)
Q Consensus 19 ~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~~~Gi~iffkLL~s~s 98 (462)
++|-.+-.-++..+.. .+-....+--=+-++.++.|++.=.-+|.|+=.+=-.||--+.||+++ .|.||.-.+
T Consensus 122 kikIn~~yaLeeIara-nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLpr------L~aLL~D~d 194 (253)
T 2db0_A 122 KTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPR------IINLLHDGD 194 (253)
T ss_dssp HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHH------HHGGGGCSS
T ss_pred cceecHHHHHHHHHHh-ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHH------HHHHHcCcc
Confidence 4555555555554422 122222222222233334444444445555544444566688899998 589999999
Q ss_pred chhHHhHHHHHHHHHhcCCccccccccCcchhHHHHHHHHhcCCCcchH
Q psy10488 99 QLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESSLSF 147 (462)
Q Consensus 99 E~IRl~ALKlLG~fL~~~~~kRK~~~m~~~~lfslLseRL~~~~~~lt~ 147 (462)
|-||-.|.+-||.+---.|.-|| .+-++|--+.++=++
T Consensus 195 eiVRaSaVEtL~~lA~~npklRk-----------ii~~kl~e~~D~S~l 232 (253)
T 2db0_A 195 EIVRASAVEALVHLATLNDKLRK-----------VVIKRLEELNDTSSL 232 (253)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHH-----------HHHHHHHHCCCSCHH
T ss_pred hhhhHHHHHHHHHHHHcCHHHHH-----------HHHHHHHHhcCcHHH
Confidence 99999999999998765555566 455666555544333
No 62
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=22.15 E-value=2.8e+02 Score=30.98 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=20.0
Q ss_pred CeeEeeecccCC---CchhHHhHHHHHHHHHh
Q psy10488 86 GVRTVFKLLTSQ---SQLIRLQALKLLGFFLS 114 (462)
Q Consensus 86 Gi~iffkLL~s~---sE~IRl~ALKlLG~fL~ 114 (462)
|..+...+|.+. +..+|..|++.|-..+.
T Consensus 41 aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~ 72 (980)
T 3ibv_A 41 GWKICHEIFSEKTKYKPSTRLICLQTLSEKVR 72 (980)
T ss_dssp HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 334444455443 68899999999987775
No 63
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=21.97 E-value=47 Score=24.47 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHhhhcc
Q psy10488 36 PGVKEDELQSILNYLTTVQE 55 (462)
Q Consensus 36 ~~is~~El~AIlnfl~t~~E 55 (462)
...+++|+.+|++||.+..+
T Consensus 64 ~~ls~~ei~~l~~yl~~~~~ 83 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLDQAE 83 (86)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhh
Confidence 36799999999999987643
No 64
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.94 E-value=1.3e+02 Score=28.37 Aligned_cols=91 Identities=12% Similarity=0.117 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhcCCCcchhhhhh-------cCCee
Q psy10488 16 DILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDM-------KQGVR 88 (462)
Q Consensus 16 EI~~IR~~LL~~lkqLi~~~~~is~~El~AIlnfl~t~~Ed~nl~DVL~mli~LLsE~P~~~~p~fd~-------~~Gi~ 88 (462)
+.-.|...|..|=++. ...+++|+.+|-..+.+.. .++..+...+..++.+-| ...|++|- ..+..
T Consensus 17 n~~~i~~Kl~efN~~~----~~ls~~el~~l~~~l~~l~--~~~~~~~~~~~ki~~~WP-~~fP~lDllRl~~~~~~~~~ 89 (253)
T 3gae_A 17 NPDTIFNGIVKINSNE----KTFDDEILAQIGGALHDID--ESWELLLSFANTIRSNWE-IKTPAYDIVRLIVKKLPYSS 89 (253)
T ss_dssp CHHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHTCHH--HHHHHHHHHHHHHHHHCS-CCHHHHHHHHHHGGGCSCGG
T ss_pred CHHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHhCC-ccchHHHHHHHHHcCCchHH
Confidence 4566777777777763 2789999999988776543 456667777889998899 78899992 22333
Q ss_pred Eeeecc----cCCCchhHHhHHHHHHHHH
Q psy10488 89 TVFKLL----TSQSQLIRLQALKLLGFFL 113 (462)
Q Consensus 89 iffkLL----~s~sE~IRl~ALKlLG~fL 113 (462)
++..++ .+...+.|+.+++++.-++
T Consensus 90 ~l~~~l~~~~~~~~~~~~ml~lR~l~NlF 118 (253)
T 3gae_A 90 DIKDYIEEGLGNKNITLTMLTVRILVNCF 118 (253)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHcc
Confidence 333322 2233456666666665555
No 65
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=21.90 E-value=47 Score=24.42 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHhhhcc
Q psy10488 37 GVKEDELQSILNYLTTVQE 55 (462)
Q Consensus 37 ~is~~El~AIlnfl~t~~E 55 (462)
..+++|+++|++|+.+..+
T Consensus 64 ~ls~~ei~~l~~yl~~~~~ 82 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLSQSE 82 (85)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 6899999999999988643
No 66
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=21.66 E-value=51 Score=25.85 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=16.4
Q ss_pred CCC-CHHHHHHHHHHHhhhcc
Q psy10488 36 PGV-KEDELQSILNYLTTVQE 55 (462)
Q Consensus 36 ~~i-s~~El~AIlnfl~t~~E 55 (462)
.++ +++|+++|++||.+..|
T Consensus 88 ~~l~s~~ei~~l~aYl~sl~e 108 (108)
T 1ycc_A 88 GGLKKEKDRNDLITYLKKACE 108 (108)
T ss_dssp CCCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 356 79999999999988654
No 67
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=21.57 E-value=49 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHhhh
Q psy10488 37 GVKEDELQSILNYLTTV 53 (462)
Q Consensus 37 ~is~~El~AIlnfl~t~ 53 (462)
..+++|+++|++|+.+.
T Consensus 62 ~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 62 QVAEADIEKIVRWVLTL 78 (79)
T ss_dssp TSCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 57899999999999763
No 68
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=21.01 E-value=50 Score=24.56 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHhhhcc
Q psy10488 37 GVKEDELQSILNYLTTVQE 55 (462)
Q Consensus 37 ~is~~El~AIlnfl~t~~E 55 (462)
..+++|+.+|++|+.+..+
T Consensus 68 ~ls~~ei~~l~~yl~~~~~ 86 (89)
T 1f1f_A 68 RLSPLQIEDVAAYVVDQAE 86 (89)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 4899999999999987643
No 69
>2ck3_I ATP synthase subunit epsilon\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} PDB: 1e79_I* 1h8e_I* 2jdi_I* 2v7q_I* 2wss_I* 2w6j_I 2w6h_I 2w6i_I 2xnd_I*
Probab=20.89 E-value=27 Score=26.41 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=8.4
Q ss_pred HhHHHhhhhHHhhhhh
Q psy10488 284 VCTCAVRNCLECKERH 299 (462)
Q Consensus 284 vc~~aVRncLecr~~~ 299 (462)
+|+.+||+||.=-.+.
T Consensus 17 i~A~~vR~~LKe~~r~ 32 (50)
T 2ck3_I 17 ICAKAVRDALKTEFKA 32 (50)
T ss_dssp HHHHHHHTC-------
T ss_pred HHHHHHHHHhCcHHHH
Confidence 7899999999755443
No 70
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=20.84 E-value=49 Score=26.37 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHhhhcc
Q psy10488 38 VKEDELQSILNYLTTVQE 55 (462)
Q Consensus 38 is~~El~AIlnfl~t~~E 55 (462)
.+++|+++|++||.+..|
T Consensus 97 ls~~ei~~l~aYl~sl~~ 114 (114)
T 2w9k_A 97 KKPQERADVIAYLETLKG 114 (114)
T ss_dssp CCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHccC
Confidence 579999999999988754
No 71
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=20.54 E-value=49 Score=24.59 Aligned_cols=20 Identities=10% Similarity=0.378 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHhhhcc
Q psy10488 36 PGVKEDELQSILNYLTTVQE 55 (462)
Q Consensus 36 ~~is~~El~AIlnfl~t~~E 55 (462)
...+++|+.+|++||.+..+
T Consensus 70 ~~ls~~ei~~l~~yl~~l~~ 89 (93)
T 3dr0_A 70 GRLSDADIANVAAYIADQAE 89 (93)
T ss_dssp TTBCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 35789999999999987654
No 72
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=20.44 E-value=61 Score=25.20 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.1
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q psy10488 34 LGPGVKEDELQSILNYLTTV 53 (462)
Q Consensus 34 ~~~~is~~El~AIlnfl~t~ 53 (462)
-+..++++|+++|++||.+.
T Consensus 61 ~g~~ls~~e~~~I~~YL~~~ 80 (81)
T 2blf_B 61 YHAPVDEADAKAIADYLAKT 80 (81)
T ss_dssp SCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 46689999999999999763
No 73
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=20.25 E-value=60 Score=24.38 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHhhhccc
Q psy10488 37 GVKEDELQSILNYLTTVQED 56 (462)
Q Consensus 37 ~is~~El~AIlnfl~t~~Ed 56 (462)
..+++|+++|++|+.+....
T Consensus 57 ~ls~~ei~~l~~yl~~~~~~ 76 (80)
T 1wve_C 57 YVDDESLTQVAEYLSSLPAP 76 (80)
T ss_dssp TSCHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHHHHCcCC
Confidence 57999999999999986543
Done!