RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10488
(462 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 7e-13
Identities = 85/528 (16%), Positives = 153/528 (28%), Gaps = 169/528 (32%)
Query: 10 PRPAQKDILAIRAYILLFLKQLM---------MLGPG--------VKEDELQSILNY--- 49
R + L +R L +L +LG G ++Q +++
Sbjct: 132 SRL--QPYLKLRQA----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 50 ---LTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQAL 106
L E + ++LQ L+ + D ++ + Q++L RL
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRS----DHSSNIKLRIHSIQAELRRLLKS 240
Query: 107 KLLGFFLSRSTHKRKY----DVMSPHNLY-------TLLAERLLQHESSLSFATYNVLYE 155
K ++ +V + LL R Q LS AT +
Sbjct: 241 KP---------YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 156 I-----LTEHISQQIL--YTRHPE---PESHYRLENPMILKVVATLIRQ----------- 194
LT + +L Y P NP L ++A IR
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHV 350
Query: 195 --SKQSELL---------LEVKKLFLSDLTLLCNNNRENRR---TVLQMSVWQGMPIEVA 240
K + ++ E +K+F L++ + +L + +W +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFD-RLSVF----PPSAHIPTILLSL-IWFDVIKSDV 404
Query: 241 VSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLECKERHR 300
+ + +L SL +E + S+ I L L L HR
Sbjct: 405 MVVVNKLHK--------YSL----VEKQPKESTISIPSIYLELKVKLENEYAL-----HR 447
Query: 301 ALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKD----------LHK 350
++++ YN P +++D+ P D L
Sbjct: 448 SIVDH--YNIPKT---------------FDSDDL-------IPPYLDQYFYSHIGHHLKN 483
Query: 351 LLQDMDVNRLRAAIYRDME--ESK--QAQFLSLAVVYFISVLM-VSKYRD-ILEPPPMLP 404
+ + R ++ D E K A ++ L + Y+ I + P
Sbjct: 484 IEHPERMTLFRM-VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 405 RALSPPLTQNNNQGHEGKWVYFISVLMVSKYRDILEPPPMLPRALSPP 452
R ++ L + E L+ SKY D+L AL
Sbjct: 543 RLVNAIL--DFLPKIE-------ENLICSKYTDLLR------IALMAE 575
Score = 57.2 bits (137), Expect = 7e-09
Identities = 65/457 (14%), Positives = 137/457 (29%), Gaps = 112/457 (24%)
Query: 2 NHNHIVDGPRPAQ----KDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDE 57
+H+H +D KDIL++ F V + + + + ++ E
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSV------FEDAF------VDNFDCKDVQDMPKSILSKE 49
Query: 58 NLHDVLQT---------LISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQ-ALK 107
+ ++ + L + +V F +++ +R +K L S + + Q ++
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 108 LLGFFLSRSTHKRKYDVMSPHN-----LYTLLAERLLQHESSLSFATYNVLY-------E 155
+ R V + +N Y L + LL+ L A ++
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE----LRPAKNVLIDGVLGSGKT 164
Query: 156 ILTEHISQQILYTRHPEPESHY----RLENPM-ILKVVATLIRQSKQS-----------E 199
+ + + + + +P +L+++ L+ Q + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 200 LLLEVKKLFLSDLTLLCNNNRENRRTVL----QMSVWQGMPIEVAVSFLQRLVNMADVLV 255
L + + L LL + EN VL W + + R + D L
Sbjct: 225 LRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 256 FASSLNFAELEAEKNMS---SGGILRQCLRLVCTCAVRNCLECKERHRALLNSPAYNNPT 312
A++ + + ++ +L + L +C L +P
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYL---------DCRPQDLPREVLTTNPR----- 328
Query: 313 KNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKLLQDMDVNRLRAAIYRDMEESK 372
S+I D + D + + +N L A YR M
Sbjct: 329 ----RLSII-AESIR-----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---- 374
Query: 373 QAQFLSLAVVYF-------ISVLMV----SKYRDILE 398
F L+V F +L + D++
Sbjct: 375 ---FDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMV 406
Score = 40.2 bits (93), Expect = 0.002
Identities = 19/174 (10%), Positives = 46/174 (26%), Gaps = 43/174 (24%)
Query: 297 ERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKLLQDMD 356
+ P+ L Q K +V P L + L ++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVS-----RLQPYLKLRQALLELR 148
Query: 357 VNR--------------LRAAIYRDMEESKQAQFLSLAVVYFISVLMVSKYRDILEPPPM 402
+ + + + + F ++++++ + +LE
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF----KIFWLNLKNCNSPETVLEMLQK 204
Query: 403 LPRALSPPLTQNNNQG-------HEGKWVYFISVLMVSKYRDILEPPPMLPRAL 449
L + P T ++ H + ++ R +L+ P L
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQ----------AELRRLLKSKP-YENCL 247
Score = 34.4 bits (78), Expect = 0.082
Identities = 15/140 (10%), Positives = 45/140 (32%), Gaps = 40/140 (28%)
Query: 335 PGGPTSSSSPVKD-LH---KLLQDMDVNR------LRAAIYRDMEESKQAQFLSLAVVYF 384
P T +D L+ ++ +V+R LR A+ + A+ + ++
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKNV---LIDG 157
Query: 385 I-----SVLMVSKYRDILEPPPMLPRALSPPLTQNNNQGHEGKWVYFISVLMVSKYRDIL 439
+ + + + + + + ++++++ + +L
Sbjct: 158 VLGSGKTWVALDVCLS------------YKVQCKMDFK------IFWLNLKNCNSPETVL 199
Query: 440 EPPPMLPRALSPPLTQNNNQ 459
E L + P T ++
Sbjct: 200 EMLQKLLYQIDPNWTSRSDH 219
Score = 32.9 bits (74), Expect = 0.30
Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 43/148 (29%)
Query: 3 HNHIV---DGPRPAQKDILAIRAYI-LLFLKQ------LMMLGPGVKEDELQSILNYLTT 52
++HI ++ L ++ FL+Q G + LQ + Y
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 53 VQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFF 112
+ +++ ++ + + +++ F L + LI + LL
Sbjct: 534 ICDNDPKYE--RLVNAIL---------DF-----------LPKIEENLICSKYTDLLRIA 571
Query: 113 LSRSTHKRKYDVMSPHNLYTLLAERLLQ 140
L M+ A + +Q
Sbjct: 572 L-----------MAEDEAIFEEAHKQVQ 588
Score = 31.0 bits (69), Expect = 1.1
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 21/127 (16%)
Query: 349 HKLLQDMDVNRLRAAIYRDMEESKQAQFLSLAVVYFI-----SVLMVSKYRDILEPPPML 403
H D + + Y+D+ + F+ + S+L + I+ +
Sbjct: 3 HHHHMDFETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 404 PRA--LSPPLTQNNNQGHEGKWVYFISVLMVSKYRDILEPPPMLPRALSPPLT------- 454
L L + + F+ ++ Y+ ++ P R S
Sbjct: 62 SGTLRLFWTLLSKQEEMVQ----KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 455 --QNNNQ 459
N+NQ
Sbjct: 118 RLYNDNQ 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-05
Identities = 74/444 (16%), Positives = 125/444 (28%), Gaps = 151/444 (34%)
Query: 27 FLKQLMMLGPGVKE-----DELQSI-------LNYLTTVQEDEN---LHDVLQTLISLMC 71
F K L P E DE + L Y++++ E VL ++
Sbjct: 37 FNKIL----PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT--- 89
Query: 72 DHPACLVPAFDMK--QG--VRT-VFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMS 126
F+ +G + KLL + + + +R KR +D S
Sbjct: 90 --------EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 127 PHNLYTLLAERLLQHESSLSFATYNVL--------Y--EILTEHISQQILYTRHPEPESH 176
L + + + Y E+ + LY
Sbjct: 142 NS--------ALFRAVGEGNAQLVAIFGGQGNTDDYFEEL-------RDLYQ-------T 179
Query: 177 YRLENPMILKVVATLIRQSKQSELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQGMP 236
Y + V LI+ S +E L E L TL QG+
Sbjct: 180 YH---VL----VGDLIKFS--AETLSE-----LIRTTLDAEKVFT-----------QGLN 214
Query: 237 IEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGI-LRQCLRLVCTCAVRNCLEC 295
I + +L+ N D S +S I + Q V T
Sbjct: 215 I---LEWLENPSNTPDKDYLLSIP----------ISCPLIGVIQLAHYVVTA-------- 253
Query: 296 KERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKLLQDM 355
+ L +P L+S ++GA + V + + + ++
Sbjct: 254 ----KLLGFTPG--------ELRSYLKGATGHSQGL--VTAVAIAETDSWESFFVSVRKA 299
Query: 356 DVNRLRAAIY---RDMEESKQA-QFLSLAVVYFISVLMVSKYRDILEPPPML-----PRA 406
+ + R +A SL S+L S + P PML +
Sbjct: 300 ----ITVLFFIGVR----CYEAYPNTSLP----PSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 407 -LSPPLTQNNNQGHEGKWVYFISV 429
+ + + N+ GK V IS+
Sbjct: 348 QVQDYVNKTNSHLPAGKQVE-ISL 370
Score = 43.9 bits (103), Expect = 1e-04
Identities = 42/243 (17%), Positives = 65/243 (26%), Gaps = 77/243 (31%)
Query: 236 PIEVAVSFLQRLVNMADVLVFASSLNFAELEAEKNMSSGGILRQCLRLVCTCAVRNCLEC 295
P E+ FL + E S G Q L L T LE
Sbjct: 57 PAELVGKFLG----------------YVSSLVEP--SKVGQFDQVLNLCLTEFENCYLEG 98
Query: 296 KERHRALLNSPAYNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKLLQDM 355
+ H AL N T + LI+ A + P S L +
Sbjct: 99 NDIH-ALAAKLLQENDTTLVKTKELIKNY----ITARIMAKRPFDKKSN----SALFR-- 147
Query: 356 DVNRLRAAIYRDMEESKQAQF---------LS-LAVVYFISVLMVSKYRDILEPPPMLPR 405
V A + A F L +Y Y ++ L +
Sbjct: 148 AVGEGNAQLV--------AIFGGQGNTDDYFEELRDLY-------QTYHVLVGD---LIK 189
Query: 406 ALSPPLTQNNNQGHEGKWVYFISVLMVSKYRDI---LEPPPMLPR-------ALSPP--- 452
+ L++ + + V+ ++ +I LE P P +S P
Sbjct: 190 FSAETLSELIRTTLDAEKVF-------TQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 453 LTQ 455
+ Q
Sbjct: 243 VIQ 245
Score = 35.4 bits (81), Expect = 0.043
Identities = 54/307 (17%), Positives = 102/307 (33%), Gaps = 106/307 (34%)
Query: 7 VDGP--RPAQKDILAIRAYI---LLFLKQLMMLGPGVKEDELQSILNYLTTVQ----EDE 57
++ P P + D L I L+ + QL +Y+ T +
Sbjct: 219 LENPSNTPDK-DYLL-SIPISCPLIGVIQL---------------AHYVVTAKLLGFTPG 261
Query: 58 NLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQ------LIRLQALKLLGF 111
L L+ H LV A + +++ + +A+ +L F
Sbjct: 262 ELRSYLKGATG----HSQGLVTA------------VAIAETDSWESFFVSVRKAITVL-F 304
Query: 112 FL-SRSTHKRKYDVMSPHNLYTLLAERLLQHESSLS--FATYNVLYEILTEHI------- 161
F+ R + P ++L + L +E S + N+ E + +++
Sbjct: 305 FIGVRCYEAYPNTSLPP----SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 162 --SQQI---LY--TRH-----PEPESHYRLENPMILKVVA-TLIRQSKQ----------- 197
+Q+ L ++ P P+S Y L N + K A + + QS+
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGP-PQSLYGL-NLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 198 ----------SELLLEVKKLFLSDLTLLCNNNRENRRTVLQMSVWQ---GMPI-EVAVSF 243
S LL+ L DL NN +Q+ V+ G + ++ S
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLV---KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 244 LQRLVNM 250
+R+V+
Sbjct: 476 SERIVDC 482
Score = 30.4 bits (68), Expect = 1.8
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 43/150 (28%)
Query: 247 LVNMADV--------LVFA--SSLNFAELEAEKNMSSGGILR----QCLRLVCTCAVRNC 292
L ++ADV +VF ++ A E S+ G++ + A++
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 293 LECKERHRALLNSPA-YNNPTKNAHLQSLIRGAQTSPKNANDVPGGPTSSSSPVKDLHKL 351
+E + L YN Q V G + + + +
Sbjct: 1830 VERVGKRTGWLVEIVNYNVE-----------NQQY-------VAAGDLRA---LDTVTNV 1868
Query: 352 L-----QDMDVNRLRAAIYRDMEESKQAQF 376
L Q +D+ L+ ++ +EE + F
Sbjct: 1869 LNFIKLQKIDIIELQKSL--SLEEVEGHLF 1896
Score = 28.9 bits (64), Expect = 4.6
Identities = 45/286 (15%), Positives = 88/286 (30%), Gaps = 107/286 (37%)
Query: 29 KQLMMLGPGVKEDELQSILNYLT---------TVQEDENLHDVLQTLISLMCDHPACLV- 78
L + G K ++ NY ++ ++ ++ + S L+
Sbjct: 1670 VNLTIHFGGEKGKRIRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 79 ------PAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRST---H----KRKY--- 122
PA + L ++ + LK G + +T H Y
Sbjct: 1728 ATQFTQPA--L---------TLMEKAAF---EDLKSKGLIPADATFAGHSLGE---YAAL 1770
Query: 123 ----DVMSPHNLYTLLAER--LLQHESSLSFATYNVLYEILTEHISQQILYTRHPEPESH 176
DVMS +L ++ R +Q R S+
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVP------------------------RDELGRSN 1806
Query: 177 YRL--ENPMILKVVATLIRQ---------SKQSELLLEVKKLFLSDLTLLCNNNRENRRT 225
Y + NP +V A+ ++ K++ L+E+ N N EN++
Sbjct: 1807 YGMIAINPG--RVAASFSQEALQYVVERVGKRTGWLVEI-----------VNYNVENQQY 1853
Query: 226 VLQMSVWQGMP--IEVAVSFLQRL-VNMADVLVFASSLNFAELEAE 268
V + G ++ + L + + D++ SL+ E+E
Sbjct: 1854 VA--A---GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo
sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Length = 341
Score = 32.6 bits (74), Expect = 0.25
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 61 DVLQTLISLMCDHPACLVPAFDMKQGVRTVF----KLLTSQSQLIRLQALKLLGFFLSRS 116
D T L+ H L F ++Q F KLL S++ + + Q+LKLLG L
Sbjct: 183 DAFATFKDLLTRHKL-LSAEF-LEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR 240
Query: 117 THK---RKYDVMSPHNLYTLLAERLLQHES-SLSFATYNVL 153
+ KY + P NL ++ LL+ +S ++ F ++V
Sbjct: 241 HNFTIMTKY-ISKPENLKLMM--NLLRDKSRNIQFEAFHVF 278
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 31.5 bits (71), Expect = 0.66
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Query: 38 VKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQ 97
+++ L L + E L D + S + D P + K V + KLL +
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAI-SYLTDGPNERIEMVVKKGVVPQLVKLLGAT 286
Query: 98 SQLIRLQALKLLGFFLSRSTHKRKYDVMSPHNLYTLLAERLLQHESS 144
I AL+ +G + T ++ V+ L LL + +
Sbjct: 287 ELPIVTPALRAIG-NIVTGTDEQTQKVIDAGALAVFP--SLLTNPKT 330
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 29.7 bits (66), Expect = 1.9
Identities = 11/91 (12%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 20 IRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDENLHDVLQTLISLMCDHPACLVP 79
+ + L+++ P + ++ ++ L++ + E+ L + ++ + + P
Sbjct: 123 TKINVSYALEEIAKANPMLMASIVRDFMSMLSS-KNREDKLTALNFIEAMGENSFKYVNP 181
Query: 80 AFDMKQGVRTVFKLLTSQSQLIRLQALKLLG 110
+ LL +++R A++ L
Sbjct: 182 FLP------RIINLLHDGDEIVRASAVEALV 206
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET:
HEC; 1.24A {Rhodothermus marinus}
Length = 124
Score = 28.5 bits (63), Expect = 2.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 32 MMLGPGVKEDELQSILNYLTTVQEDE 57
MM + E++ ++IL YL V E++
Sbjct: 99 MMTDMALSEEQARAILEYLRQVAENQ 124
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 29.4 bits (65), Expect = 3.2
Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 11 RPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQEDEN---LHDVLQTLI 67
+ + IR++ + + Q ++ + S + L + DE +V + L+
Sbjct: 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV 240
Query: 68 SLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLSRSTHKRKYDVMSP 127
L+ L+P M V + + Q + + L+A + F+L+ + DV+
Sbjct: 241 MLLEVRMDRLLP--HMHNIVEYMLQRTQDQDENVALEACE---FWLTLAEQPICKDVLVR 295
Query: 128 H 128
H
Sbjct: 296 H 296
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 28.8 bits (64), Expect = 3.9
Identities = 10/89 (11%), Positives = 23/89 (25%)
Query: 55 EDENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVFKLLTSQSQLIRLQALKLLGFFLS 114
+ + L L+ + V+ + L+ ++ L L ++
Sbjct: 179 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238
Query: 115 RSTHKRKYDVMSPHNLYTLLAERLLQHES 143
+ L LL R +
Sbjct: 239 DFPQGVRECREPELGLEELLRHRCQLLQQ 267
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 26.4 bits (58), Expect = 8.7
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 278 RQCLRLVCTCAVRNCLECKERHRALLNSPAYNNPTKNAHLQSLIR 322
+ C + A C C+ R + N N L ++I+
Sbjct: 39 KPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQ 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.389
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,657,708
Number of extensions: 379432
Number of successful extensions: 707
Number of sequences better than 10.0: 1
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 28
Length of query: 462
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 365
Effective length of database: 3,993,456
Effective search space: 1457611440
Effective search space used: 1457611440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.1 bits)