RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10488
         (462 letters)



>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 330

 Score = 34.3 bits (79), Expect = 0.021
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 13/105 (12%)

Query: 57  ENLHDVLQTLISLMCDHPACLVPAFDMKQGVRTVF----KLLTSQSQLIRLQALKLLGFF 112
           +   D   T   L+  H   L   F ++Q     F    KLL S++ + + Q+LKLLG  
Sbjct: 170 DIASDAFATFKDLLTRHKL-LSAEF-LEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL 227

Query: 113 LSRSTHK---RKYDVMSPHNLYTLLAERLLQHES-SLSFATYNVL 153
           L    +     KY +  P NL  ++   LL+ +S ++ F  ++V 
Sbjct: 228 LLDRHNFTIMTKY-ISKPENLKLMM--NLLRDKSRNIQFEAFHVF 269


>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris
           [TaxId: 1076]}
          Length = 114

 Score = 26.3 bits (57), Expect = 3.4
 Identities = 8/51 (15%), Positives = 17/51 (33%)

Query: 4   NHIVDGPRPAQKDILAIRAYILLFLKQLMMLGPGVKEDELQSILNYLTTVQ 54
              +  P    K  L  +      +    M      E + + ++ YL T++
Sbjct: 64  VPYLADPNAFLKKFLTEKGKADQAVGVTKMTFKLANEQQRKDVVAYLATLK 114


>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1,
           OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 146

 Score = 26.8 bits (59), Expect = 4.0
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 64  QTLISLMCDHP---ACLVPAFDMKQGVRTVFKLLTSQSQL 100
           Q  + L+  +          F   QG +TV +L+    +L
Sbjct: 29  QYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQKL 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,582,398
Number of extensions: 69721
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 11
Length of query: 462
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 374
Effective length of database: 1,199,356
Effective search space: 448559144
Effective search space used: 448559144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)