BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10489
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3
Length = 3578
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 95/136 (69%), Gaps = 20/136 (14%)
Query: 8 VLYDGKLSTAIVFMYNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQS-----------T 56
VLYDGKLS AIVFMYNPVATD QLCLQS+PKGN +YFVHTPHALMLQ T
Sbjct: 398 VLYDGKLSNAIVFMYNPVATDGQLCLQSSPKGNVSYFVHTPHALMLQDVKAVVTHSIHCT 457
Query: 57 DRSTREICVIEAVWTCQSTSMDG---------RLSKLLGFICELVESSQTVQQHIIQNRG 107
S I V+ +++ + +G SKLLGFICELVE+SQTVQQH+IQNRG
Sbjct: 458 LNSIGGIQVLFPLFSQLDMAHEGLGDIKRDPTLCSKLLGFICELVETSQTVQQHMIQNRG 517
Query: 108 FLAISYMLQKLSREHL 123
FL IS+MLQ+ SREHL
Sbjct: 518 FLVISFMLQRSSREHL 533
>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus
musculus GN=Lrba PE=1 SV=1
Length = 2856
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 83/134 (61%), Gaps = 18/134 (13%)
Query: 8 VLYDGKLSTAIVFMYNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQ--------STDRS 59
+LYDGKLS+AI FMYNP ATD+QLCL+S+PK NP+ FVH+PHALMLQ S +
Sbjct: 407 LLYDGKLSSAIAFMYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSA 466
Query: 60 TREICVIEAVWTC-------QSTSMDGRLS---KLLGFICELVESSQTVQQHIIQNRGFL 109
I ++ ++ Q S + L+ LL FI EL+++S +Q+ ++ +GFL
Sbjct: 467 MHSIGGVQVLFPLFAQLDYKQYLSDEVDLTICTTLLAFIMELLKNSIAMQEQMLACKGFL 526
Query: 110 AISYMLQKLSREHL 123
I Y L+K S+ H+
Sbjct: 527 VIGYSLEKSSKSHV 540
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo
sapiens GN=LRBA PE=1 SV=4
Length = 2863
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 82/135 (60%), Gaps = 20/135 (14%)
Query: 8 VLYDGKLSTAIVFMYNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQ--------STDRS 59
+LYDGKLS+AI F YNP ATD+QLCL+S+PK NP+ FVH+PHALMLQ S +
Sbjct: 407 LLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSA 466
Query: 60 TREICVIEAVWTCQSTSMDGR-----------LSKLLGFICELVESSQTVQQHIIQNRGF 108
I ++ ++ + +D R S LL FI EL+++S +Q+ ++ +GF
Sbjct: 467 MHSIGGVQVLFPLFA-QLDYRQYLSDEIDLTICSTLLAFIMELLKNSIAMQEQMLACKGF 525
Query: 109 LAISYMLQKLSREHL 123
L I Y L+K S+ H+
Sbjct: 526 LVIGYSLEKSSKSHV 540
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
Length = 2946
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 20/135 (14%)
Query: 8 VLYDGKLSTAIVFMYNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQ--------STDRS 59
VLYDGKL+++I F YN ATD+QLCL+S+PK N + FVH+PHALMLQ S +
Sbjct: 433 VLYDGKLASSIAFTYNAKATDAQLCLESSPKENASIFVHSPHALMLQDVKAIVTHSIHSA 492
Query: 60 TREICVIEAVWTCQSTSMDGR-----------LSKLLGFICELVESSQTVQQHIIQNRGF 108
I I+ ++ + +D R + LL F+ EL++SS +Q+ ++ +GF
Sbjct: 493 IHSIGGIQVLFPLFA-QLDNRQLNDSQVETTVCATLLAFLVELLKSSVAMQEQMLGGKGF 551
Query: 109 LAISYMLQKLSREHL 123
L I Y+L+K SR H+
Sbjct: 552 LVIGYLLEKSSRVHI 566
>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1
Length = 2936
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 20/135 (14%)
Query: 8 VLYDGKLSTAIVFMYNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQ--------STDRS 59
VLYDGKL+++I F YN ATD+QLCL+S+PK N + FVH+PHALMLQ S +
Sbjct: 423 VLYDGKLASSIAFSYNAKATDAQLCLESSPKENASIFVHSPHALMLQDVKAIVTHSIHSA 482
Query: 60 TREICVIEAVWTCQSTSMDGR-----------LSKLLGFICELVESSQTVQQHIIQNRGF 108
I I+ ++ + +D R + LL F+ EL++SS +Q+ ++ +GF
Sbjct: 483 IHSIGGIQVLFPLFA-QLDNRQLNDSQVETTVCATLLAFLVELLKSSVAMQEQMLGGKGF 541
Query: 109 LAISYMLQKLSREHL 123
L I Y+L+K SR H+
Sbjct: 542 LVIGYLLEKSSRVHI 556
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2
PE=2 SV=3
Length = 2507
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 19/134 (14%)
Query: 9 LYDGKLSTAIVFMYNPVATDSQLCLQSAPK-GNPTYFVHTPHALMLQ--------STDRS 59
L+DG L +++VF Y P QLCL + PK TYFV PHA+M + S +S
Sbjct: 505 LFDGHLHSSLVFAYCPKNCHGQLCLYTPPKTAASTYFVQIPHAVMKEGVEVITTHSIHKS 564
Query: 60 TREICVIEAVW---------TCQSTSMDGRLSK-LLGFICELVESSQTVQQHIIQNRGFL 109
+ + I+ + + S+DG + + LL I L+ SSQ+ QQ + ++GFL
Sbjct: 565 LQSVGGIQILLPLFAQIDLPSSNDNSIDGEVCQTLLSLIALLLSSSQSSQQQLFHSKGFL 624
Query: 110 AISYMLQKLSREHL 123
IS LQK S HL
Sbjct: 625 IISSCLQKASPSHL 638
>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2
PE=3 SV=1
Length = 2531
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 19/134 (14%)
Query: 9 LYDGKLSTAIVFMYNPVATDSQLCLQSAPK-GNPTYFVHTPHALMLQ--------STDRS 59
L+DG L +++VF Y P QLCL + PK TYFV PHA+M + S +S
Sbjct: 512 LFDGHLHSSLVFAYCPKNCHGQLCLFTPPKTAANTYFVQIPHAVMKEGVEVITTHSIHKS 571
Query: 60 TREICVIEAVWT--CQSTSMDGRLSKLLGFICE--------LVESSQTVQQHIIQNRGFL 109
+ + I+ + Q + + G +C+ L+ SSQ+ QQ + ++GFL
Sbjct: 572 LQSVGGIQILLPLFAQIDLPSSHDNTIDGDVCQTLLSLISLLLSSSQSSQQQLFHSKGFL 631
Query: 110 AISYMLQKLSREHL 123
IS LQ+ S HL
Sbjct: 632 IISSCLQEASPSHL 645
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans
GN=F48E8.6 PE=3 SV=2
Length = 848
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 70 WTCQSTSMDGRLSKLLGFICEL-VESSQTVQQHIIQNRGF 108
W +S DGRL KLLG E+ E+ + V +H I +R F
Sbjct: 268 WRAESVYADGRLVKLLGMSGEIDTETERIVYEHQIDHREF 307
>sp|Q54RQ8|LVSE_DICDI BEACH domain-containing protein lvsE OS=Dictyostelium discoideum
GN=lvsE PE=4 SV=1
Length = 2192
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 2 ILKEG-TVLYD-------GKLSTAIVFMYNPVATDSQLCLQ 34
+ KEG T +YD G+ + I+F Y+P ATD LC +
Sbjct: 466 VPKEGMTAIYDSQLFLASGRRNIPIIFTYHPRATDKALCFE 506
>sp|Q9BBN6|YCF1_LOTJA Putative membrane protein ycf1 OS=Lotus japonicus GN=ycf1 PE=3 SV=1
Length = 1793
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 27/153 (17%)
Query: 2 ILKEGTVLYDGKLSTAIVFMYN---PVATDSQLCLQSAPKGNPTYFVHTPHALMLQS--T 56
IL+ V KL + F+ N V TD LC+ S P+ N +F+ + ++ QS
Sbjct: 1072 ILQRRNVQLTHKLYSFFKFLLNFMKKVYTDIFLCIVSVPRINVQFFLESTKKIINQSIYN 1131
Query: 57 DRSTREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQ 116
++ EI +D ++ FI + +SS T +N A SY +
Sbjct: 1132 KKTNEEI-------------IDKTNQSIIHFISIINKSSNT------KNTNSAANSYEVS 1172
Query: 117 KLSREHLIAGHSRSDSLNVCGEKKS---DFDRR 146
LS+ ++ S+ LNV K D+D R
Sbjct: 1173 ALSQAYVFFKISQIQVLNVYKYKFKYVFDYDGR 1205
>sp|Q54U63|LVSC_DICDI BEACH domain-containing protein lvsC OS=Dictyostelium discoideum
GN=lvsC PE=4 SV=2
Length = 2491
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 82 SKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLIAG 126
+++L +++ S+ Q+ +++ +GF + Y+LQ++S E+L G
Sbjct: 550 NQVLALFKFMLKESEANQEEMLRCQGFSVMGYLLQQISPEYLTIG 594
>sp|A0RQL1|PRMA_CAMFF Ribosomal protein L11 methyltransferase OS=Campylobacter fetus
subsp. fetus (strain 82-40) GN=prmA PE=3 SV=1
Length = 275
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 47 TPHALMLQSTDRSTREICVIEAVWTCQSTSMDGRLSKLLGFICE--LVESSQTVQQHIIQ 104
T +L STD + + +WT T +GR ++ I ++ S+ ++ H +
Sbjct: 168 TDEQAVLSSTDNARKNGIKFNNIWTGSITDANGRYDVVVANIISDVILLLSKDLKMH-VN 226
Query: 105 NRGFLAISYMLQK 117
N G+L +S +L K
Sbjct: 227 NNGYLILSGILTK 239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,290,765
Number of Sequences: 539616
Number of extensions: 1643136
Number of successful extensions: 3359
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3338
Number of HSP's gapped (non-prelim): 19
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)