Query psy10489
Match_columns 147
No_of_seqs 84 out of 86
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 19:27:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08045 CDC14: Cell division 77.2 8.9 0.00019 32.7 6.4 73 59-133 131-206 (257)
2 PF08454 RIH_assoc: RyR and IP 69.2 11 0.00024 28.0 4.6 37 81-117 70-107 (109)
3 PF09759 Atx10homo_assoc: Spin 61.1 14 0.00031 27.3 3.8 34 82-118 4-37 (102)
4 KOG2160|consensus 56.5 32 0.00069 30.7 5.8 70 59-131 122-191 (342)
5 KOG2734|consensus 37.9 33 0.00072 32.2 3.1 55 48-102 342-409 (536)
6 PF01365 RYDR_ITPR: RIH domain 33.6 46 0.001 26.2 3.0 49 81-130 78-127 (207)
7 PF14483 Cut8_M: Cut8 dimerisa 32.8 95 0.0021 19.1 3.7 24 81-104 12-35 (38)
8 PF13764 E3_UbLigase_R4: E3 ub 32.0 1E+02 0.0022 30.4 5.6 75 59-134 115-199 (802)
9 KOG2154|consensus 27.0 43 0.00092 31.4 2.0 30 81-110 372-401 (505)
10 cd00020 ARM Armadillo/beta-cat 20.3 2.2E+02 0.0048 18.8 4.1 56 60-118 48-103 (120)
No 1
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=77.25 E-value=8.9 Score=32.75 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=50.7
Q ss_pred cccccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhcC-ccccchhhhhh--hhh
Q psy10489 59 STREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLS-REHLIAGHSRS--DSL 133 (147)
Q Consensus 59 ~IGGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkvs-~~hLt~~vL~a--~~l 133 (147)
.-.++++|..|++.-.-+ ....+++..+++ ++-.+|.|+..+=++.|..+|.-++...+ .+.+.+.+++= +||
T Consensus 131 r~~~m~lll~LL~~~~~~-~i~~a~L~tLv~-iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 131 REQNMELLLDLLSPSNPP-AIQSACLDTLVC-ILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred hhhhHHHHHHHhccCCCc-hHHHHHHHHHHH-HHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence 567889999998322211 112555555554 67778999999999999999999998744 55566666665 565
No 2
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=69.22 E-value=11 Score=27.97 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhh-ChhHHHHHHhhccHHHHHHHHhh
Q psy10489 81 LSKLLGFICELVES-SQTVQQHIIQNRGFLAISYMLQK 117 (147)
Q Consensus 81 ~~~lL~ll~~lL~~-s~~nQeqm~~~~Gf~iig~LLqk 117 (147)
....++.+.++++| ...||+.+.+++.+-++..+|++
T Consensus 70 ~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 70 IIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 67889999999999 99999999999999999999865
No 3
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=61.06 E-value=14 Score=27.32 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhc
Q psy10489 82 SKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKL 118 (147)
Q Consensus 82 ~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkv 118 (147)
..++.+|.++...++.+|.++.+..| |..+|+.-
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~G---i~liL~~c 37 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGG---IPLILSCC 37 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCC---hHHHHHhc
Confidence 46789999999999999999999999 45566653
No 4
>KOG2160|consensus
Probab=56.46 E-value=32 Score=30.74 Aligned_cols=70 Identities=10% Similarity=-0.013 Sum_probs=50.6
Q ss_pred cccccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhcCccccchhhhhhh
Q psy10489 59 STREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLIAGHSRSD 131 (147)
Q Consensus 59 ~IGGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkvs~~hLt~~vL~a~ 131 (147)
++||..++ +..+.....+.=..=...|....++||..||+++...|+..|--.|.+..+.+--..+|-|.
T Consensus 122 ~~ggl~~l---l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~Ai 191 (342)
T KOG2160|consen 122 SLGGLVPL---LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAI 191 (342)
T ss_pred hccCHHHH---HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHH
Confidence 78886544 33443332111122234566789999999999999999999999999888888888888874
No 5
>KOG2734|consensus
Probab=37.85 E-value=33 Score=32.23 Aligned_cols=55 Identities=9% Similarity=0.072 Sum_probs=36.0
Q ss_pred Ccccccccccc------cccccchhhHhhhhhcccC---CCc----HHHHHHHHHHHHhhChhHHHHH
Q psy10489 48 PHALMLQSTDR------STREICVIEAVWTCQSTSM---DGR----LSKLLGFICELVESSQTVQQHI 102 (147)
Q Consensus 48 pha~ml~dVk~------~IGGI~VLfPLf~Qld~~~---d~s----~~~lL~ll~~lL~~s~~nQeqm 102 (147)
-||.+..+..+ .++|...+||+|-+.-.+. +++ .-.+..+|.++++..-++++|-
T Consensus 342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~~~~r~R 409 (536)
T KOG2734|consen 342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLDGVHRQR 409 (536)
T ss_pred HHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 36666555432 8999999999999776654 222 3455566666666666666554
No 6
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=33.63 E-value=46 Score=26.22 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhh-cCccccchhhhhh
Q psy10489 81 LSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQK-LSREHLIAGHSRS 130 (147)
Q Consensus 81 ~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqk-vs~~hLt~~vL~a 130 (147)
+.....+++.+.++|..||..+.+.-+|. ++++.+. .....-..++|.+
T Consensus 78 ~~~~~~lL~~f~~~n~~NQ~~l~~~~~~l-~~~~~~~~~~~~~~~~d~l~~ 127 (207)
T PF01365_consen 78 FRLCYRLLRQFCRGNRENQKYLFKHLDFL-ISIFMQLQIGYGLGALDVLTE 127 (207)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH------HHCCCH-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhHH-HHHHHHhhccCCchHHHHHHH
Confidence 56667888889999999999999998876 6777763 3333333445544
No 7
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=32.77 E-value=95 Score=19.06 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHh
Q psy10489 81 LSKLLGFICELVESSQTVQQHIIQ 104 (147)
Q Consensus 81 ~~~lL~ll~~lL~~s~~nQeqm~~ 104 (147)
-.++..++.++.+.||-.++.+..
T Consensus 12 ~~qL~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 12 KDQLQSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHSTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhChhHHHHHHh
Confidence 678999999999999999998865
No 8
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=32.00 E-value=1e+02 Score=30.44 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=48.7
Q ss_pred cccccchhhHhhhhhcccCCC--cHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhh---c----Cccccchhhhh
Q psy10489 59 STREICVIEAVWTCQSTSMDG--RLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQK---L----SREHLIAGHSR 129 (147)
Q Consensus 59 ~IGGI~VLfPLf~Qld~~~d~--s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqk---v----s~~hLt~~vL~ 129 (147)
--||+.+++++++-+.....+ .+..++.++.... .-+.|+++|++.++..++=-.|.+ . +...+..+.|.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 579999999999988743322 3556666666444 449999999998887666444432 1 12456666665
Q ss_pred h-hhhh
Q psy10489 130 S-DSLN 134 (147)
Q Consensus 130 a-~~l~ 134 (147)
. ..++
T Consensus 194 IiE~ll 199 (802)
T PF13764_consen 194 IIESLL 199 (802)
T ss_pred HHHHHH
Confidence 5 3443
No 9
>KOG2154|consensus
Probab=26.98 E-value=43 Score=31.42 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHhhccHHH
Q psy10489 81 LSKLLGFICELVESSQTVQQHIIQNRGFLA 110 (147)
Q Consensus 81 ~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~i 110 (147)
...+|.||+++|++||..|+-++..++...
T Consensus 372 ~~~vipfI~Nll~rHp~c~~lvhr~~~~~~ 401 (505)
T KOG2154|consen 372 IVIVIPFICNLLRRHPNCQPLVHRSHALSL 401 (505)
T ss_pred chhhHHHHHHHHHhCCchhhhhcccccccC
Confidence 558899999999999999999999888765
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=20.33 E-value=2.2e+02 Score=18.81 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=37.2
Q ss_pred ccccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhc
Q psy10489 60 TREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKL 118 (147)
Q Consensus 60 IGGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkv 118 (147)
.|++..+.+++..=+ ......-+..+.++.+..+...+.++.......+--+|+..
T Consensus 48 ~~~i~~l~~~l~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 48 AGGLPALVQLLKSED---EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred CCChHHHHHHHhCCC---HHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcC
Confidence 488988888876421 11245667777888888888888887766555555555443
Done!