Query psy10489
Match_columns 147
No_of_seqs 84 out of 86
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:28:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 59.4 11 0.00037 30.5 4.5 57 59-118 79-136 (296)
2 4hxt_A De novo protein OR329; 46.6 18 0.00062 26.0 3.5 57 60-119 169-225 (252)
3 1xqr_A HSPBP1 protein; armadil 35.3 57 0.002 26.1 5.1 58 60-119 123-180 (296)
4 4db8_A Armadillo-repeat protei 28.5 42 0.0014 24.4 3.0 56 60-118 53-108 (252)
5 3grl_A General vesicular trans 27.4 29 0.00099 32.1 2.3 57 59-116 206-264 (651)
6 4db6_A Armadillo repeat protei 20.2 1.3E+02 0.0045 21.0 4.3 55 60-117 137-191 (210)
7 4db8_A Armadillo-repeat protei 19.0 89 0.0031 22.5 3.2 56 60-118 179-234 (252)
8 4db6_A Armadillo repeat protei 16.7 1.3E+02 0.0046 21.0 3.6 56 60-118 11-66 (210)
9 4hxt_A De novo protein OR329; 16.4 2E+02 0.0069 20.2 4.5 56 61-119 2-57 (252)
10 3tt9_A Plakophilin-2; cell adh 14.7 3E+02 0.01 21.3 5.5 58 59-119 50-107 (233)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=59.35 E-value=11 Score=30.48 Aligned_cols=57 Identities=7% Similarity=0.097 Sum_probs=41.2
Q ss_pred cccccchhhH-hhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhc
Q psy10489 59 STREICVIEA-VWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKL 118 (147)
Q Consensus 59 ~IGGI~VLfP-Lf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkv 118 (147)
.+||+..|.+ | +..+.......-...|.++.++++.+|+.++.+.|+..+-.+|+.-
T Consensus 79 ~~G~l~~Lv~~l---L~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~ 136 (296)
T 1xqr_A 79 QLSGMHLLVGRY---LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD 136 (296)
T ss_dssp HTTHHHHHHHTT---TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHH---HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 5788865555 4 4444322244555666778899999999999999998888888864
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=46.63 E-value=18 Score=25.97 Aligned_cols=57 Identities=9% Similarity=0.136 Sum_probs=39.8
Q ss_pred ccccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhcC
Q psy10489 60 TREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLS 119 (147)
Q Consensus 60 IGGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkvs 119 (147)
-|++..|..++.. +.+......+..+.++..+++.+.+.+....++..+-.+++.-+
T Consensus 169 ~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 169 AGGVEVLVKLLTS---TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp TTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred CcCHHHHHHHHCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc
Confidence 4666666666652 22223455666777788889999999999988888888887543
No 3
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=35.26 E-value=57 Score=26.14 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=40.6
Q ss_pred ccccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhcC
Q psy10489 60 TREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLS 119 (147)
Q Consensus 60 IGGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkvs 119 (147)
-||+..|..|+.. .+....-...+..|.++.++++..++.+....|+.++-.+|+.-+
T Consensus 123 ~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d 180 (296)
T 1xqr_A 123 LGALRKLLRLLDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 180 (296)
T ss_dssp TTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC
Confidence 3666666555542 111112455667778889999999999999999999999998643
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=28.50 E-value=42 Score=24.38 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=39.7
Q ss_pred ccccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhc
Q psy10489 60 TREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKL 118 (147)
Q Consensus 60 IGGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkv 118 (147)
-|||..|..++..-+ ......-+..|.++..+++.+++.++...|+..+-.+|+.-
T Consensus 53 ~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 108 (252)
T 4db8_A 53 AGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 108 (252)
T ss_dssp TTHHHHHHHGGGCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred cCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 477777777765432 21234555667777788999999999998888888777763
No 5
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=27.37 E-value=29 Score=32.05 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=44.7
Q ss_pred cccccchhhHhhhhhcccCCCc--HHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHh
Q psy10489 59 STREICVIEAVWTCQSTSMDGR--LSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQ 116 (147)
Q Consensus 59 ~IGGI~VLfPLf~Qld~~~d~s--~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLq 116 (147)
-=|+...||=++..=.. .+|. +..-+.++.++++.|+.||.-+.+..++.-+.-||+
T Consensus 206 FEnaFe~Lf~Ii~~Eg~-~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~ 264 (651)
T 3grl_A 206 FENAFERLLDIITEEGN-SDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFE 264 (651)
T ss_dssp HTTHHHHHHHHHHHHTG-GGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGC
T ss_pred HhccHHHHHHHHHhcCC-CccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhC
Confidence 44777777777665432 3454 677788999999999999999999999988887775
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=20.23 E-value=1.3e+02 Score=20.97 Aligned_cols=55 Identities=5% Similarity=0.102 Sum_probs=35.3
Q ss_pred ccccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhh
Q psy10489 60 TREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQK 117 (147)
Q Consensus 60 IGGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqk 117 (147)
-|++..|..++.. +.......-+..+.++...++.+++.+....++..+-.+|+.
T Consensus 137 ~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 191 (210)
T 4db6_A 137 AGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191 (210)
T ss_dssp TTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC
T ss_pred cCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC
Confidence 3455555444432 211124555667777888889999888888888777777764
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=19.01 E-value=89 Score=22.54 Aligned_cols=56 Identities=5% Similarity=0.092 Sum_probs=35.9
Q ss_pred ccccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhc
Q psy10489 60 TREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKL 118 (147)
Q Consensus 60 IGGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkv 118 (147)
-|++..|..++. .+........+..+.++..+++.+.+.+++..++..+-.+|+.-
T Consensus 179 ~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 179 AGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 234 (252)
T ss_dssp TTCHHHHHHGGG---CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred CCCHHHHHHHHC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC
Confidence 355555554443 22211245566677778888898899998888877777766654
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=16.71 E-value=1.3e+02 Score=20.95 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=35.5
Q ss_pred ccccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhc
Q psy10489 60 TREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKL 118 (147)
Q Consensus 60 IGGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkv 118 (147)
-|+...|.+|+..=| ......-...|.++..+++.+++.++...|+..+--+|+.-
T Consensus 11 ~~~~~~l~~LL~s~~---~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 66 (210)
T 4db6_A 11 GSELPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP 66 (210)
T ss_dssp --CHHHHHHHTTCSC---HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred cchhHHHHHHhcCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 345555555553221 11234555666777788899999999998887777777654
No 9
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=16.35 E-value=2e+02 Score=20.22 Aligned_cols=56 Identities=9% Similarity=0.138 Sum_probs=36.8
Q ss_pred cccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhcC
Q psy10489 61 REICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLS 119 (147)
Q Consensus 61 GGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkvs 119 (147)
|+|..|..++.. +.......-+..+.++..+++.+++.++...|...+-.+|+.-+
T Consensus 2 ~~i~~L~~~L~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 57 (252)
T 4hxt_A 2 NDVEKLVKLLTS---TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD 57 (252)
T ss_dssp CHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred CcHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC
Confidence 555555555543 22222344556677788888889999998888877777776543
No 10
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=14.75 E-value=3e+02 Score=21.29 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=37.7
Q ss_pred cccccchhhHhhhhhcccCCCcHHHHHHHHHHHHhhChhHHHHHHhhccHHHHHHHHhhcC
Q psy10489 59 STREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLS 119 (147)
Q Consensus 59 ~IGGI~VLfPLf~Qld~~~d~s~~~lL~ll~~lL~~s~~nQeqm~~~~Gf~iig~LLqkvs 119 (147)
.-|||. ||...|+.+.+..-..-..-|.++-.+++.|...+....|...+-.+|++.+
T Consensus 50 ~~G~Ip---~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~ 107 (233)
T 3tt9_A 50 QLRGIL---KLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR 107 (233)
T ss_dssp HTTHHH---HHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC
T ss_pred HcCCHH---HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC
Confidence 347764 4444455433222223344455666678999999999999999988998643
Done!