RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10489
         (147 letters)



>gnl|CDD|151744 pfam11303, DUF3105, Protein of unknown function (DUF3105).  Some
          members in this family of proteins are annotated as
          membrane proteins however this cannot be confirmed.
          Currently no function is known.
          Length = 130

 Score = 26.5 bits (59), Expect = 4.1
 Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 17 AIVFMYNPVATDSQL-CLQSAPKGNPTYFVHTP 48
          A+   Y+P     ++  L++   G     + +P
Sbjct: 51 AVWITYDPDLPPDEVEKLKALAAGCLPRVLLSP 83


>gnl|CDD|184277 PRK13725, PRK13725, plasmid maintenance protein; Provisional.
          Length = 132

 Score = 26.1 bits (57), Expect = 4.7
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 28  DSQLCLQSAPKGNPTYFVHTPHALMLQSTDRSTREICVIEAVWTCQSTSMDGR-LSKLLG 86
           D+ +C+ +  K  P    H      L +       + ++E ++  + + M  R L+ + G
Sbjct: 7   DTNICIFTI-KNKP---EHVRERFNLNTGRMCISSVTLMELIYGAEKSQMPERNLAVIEG 62

Query: 87  FIC--ELVESSQTVQQHIIQNRGFLAISYMLQKLSREHLIAGHSRSDSLNVCGEKKSDFD 144
           F+   E+++       H  Q R  LA          + +IAGH+RS  L V      +F+
Sbjct: 63  FVSRLEVLDYDTAAATHTGQIRAELARQGRPVG-PFDQMIAGHARSRGLIVVTNNTREFE 121

Query: 145 R 145
           R
Sbjct: 122 R 122


>gnl|CDD|233994 TIGR02746, TraC-F-type, type-IV secretion system protein TraC.  The
           protein family described here is common among the F, P
           and I-like type IV secretion systems. Gene symbols
           include TraC (F-type), TrbE/VirB4 (P-type) and TraU
           (I-type). The protein conyains the Walker A and B motifs
           and so is a putative nucleotide triphosphatase.
          Length = 797

 Score = 26.9 bits (60), Expect = 5.5
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 10/45 (22%)

Query: 50  ALMLQ------STDRSTREICVIEAVWTCQSTSMDGRLSKLLGFI 88
           +LM++       T R  R+IC+I+  W+     +DG   +   FI
Sbjct: 621 SLMVRITGEMYLTPRKRRKICIIDEAWSL----LDGANPQAADFI 661


>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1.
          Length = 357

 Score = 26.0 bits (57), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 62 EICVIEAVWTCQSTSMDGRLSKLLGFICE 90
          EI +I+    C ST+MD  + K L F C+
Sbjct: 52 EIPIIDMKRLCSSTAMDSEVEK-LDFACK 79


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,894,617
Number of extensions: 558345
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 6
Length of query: 147
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 59
Effective length of database: 7,034,450
Effective search space: 415032550
Effective search space used: 415032550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)