RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10489
         (147 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.4 bits (81), Expect = 0.005
 Identities = 21/143 (14%), Positives = 37/143 (25%), Gaps = 54/143 (37%)

Query: 4    KEGTVLYDGKLSTAIVFMYNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQSTDRSTREI 63
               T+ + G+    I   Y      S +  ++   G            + +  +  +   
Sbjct: 1670 VNLTIHFGGEKGKRIRENY------SAMIFETIVDGKLK------TEKIFKEINEHSTSY 1717

Query: 64   CVIEAVWTCQSTSMDGRLSKLLGFICELVESSQT-VQQHIIQNRGFLAISY-MLQKLSRE 121
                  +  +     G LS              T   Q  +       +     + L  +
Sbjct: 1718 T-----FRSE----KGLLS-------------ATQFTQPAL-----TLMEKAAFEDLKSK 1750

Query: 122  HLI------AGHSRSDSLNVCGE 138
             LI      AGH    SL   GE
Sbjct: 1751 GLIPADATFAGH----SL---GE 1766



 Score = 31.6 bits (71), Expect = 0.083
 Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 34/73 (46%)

Query: 80   RLSKLLGFICELV----ESSQTVQQHIIQNRGFLAISYMLQKLSREHLIAGHSR-----S 130
            R+ K  G++ E+V    E+ Q V                          AG  R     +
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYV-------------------------AAGDLRALDTVT 1866

Query: 131  DSLNVCGEKKSDF 143
            + LN    +K D 
Sbjct: 1867 NVLNFIKLQKIDI 1879



 Score = 31.6 bits (71), Expect = 0.096
 Identities = 25/152 (16%), Positives = 41/152 (26%), Gaps = 58/152 (38%)

Query: 8   VLYDGKLSTAIVFMYNPVATD-----SQL---CLQSAPKGNPTYFVHTPHALMLQSTDRS 59
            L  G L   +      V T      SQL     +  P+  PT                +
Sbjct: 10  TLSHGSLEHVL-----LVPTASFFIASQLQEQFNKILPE--PT------EGFAADDEPTT 56

Query: 60  TREICVIEAVWTCQSTSMDGRLSKLLGFICELVESSQTVQ-QHIIQ------NRGFLA-- 110
             E+                 + K LG++  LVE S+  Q   ++          +L   
Sbjct: 57  PAEL-----------------VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99

Query: 111 -ISYMLQKLSREHLIAGHSRSDSLNVCGEKKS 141
            I          H +A     ++     + K 
Sbjct: 100 DI----------HALAAKLLQENDTTLVKTKE 121


>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A
           {Escherichia coli}
          Length = 111

 Score = 25.0 bits (54), Expect = 7.1
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 120 REHLIAGHSRSDSLNVCGEKKSDFDRR 146
           +++L++GHSR D           F   
Sbjct: 54  KDYLVSGHSRKDVCEKYQMNNGYFSTT 80


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,008,860
Number of extensions: 96715
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 6
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)